/* * BioJava development code * * This code may be freely distributed and modified under the * terms of the GNU Lesser General Public Licence. This should * be distributed with the code. If you do not have a copy, * see: * * http://www.gnu.org/copyleft/lesser.html * * Copyright for this code is held jointly by the individual * authors. These should be listed in @author doc comments. * * For more information on the BioJava project and its aims, * or to join the biojava-l mailing list, visit the home page * at: * * http://www.biojava.org/ * * Created on 05.05.2004 * @author Andreas Prlic * */ package org.biojava.bio.structure.io; // the biojava-structure stuff import java.io.IOException; import org.biojava.bio.program.das.dasstructure.DASStructureCall; import org.biojava.bio.structure.Structure; import org.biojava.bio.structure.StructureImpl; /** * A DAS client that connects to a DAS structure service and * returns a Biojava structure class. * @author Andreas Prlic * @since 1.4 */ public class DASStructureClient implements StructureIO { String serverurl ; StructureImpl structure ; /** * Constructs a DASStructureClient object. */ /** * Constructs a DASStructureClient object. * * @param url a String ... */ public DASStructureClient(String url) { serverurl = url; } // the interfaced procedures: // /** * if pdb code is set (setId): * connect to a DAS-structure service and retreive data. * * @param pdb_code a String, representing a PDB code e.g. 5pti * @return the Structure object * @throws IOException ... */ public Structure getStructureById(String pdb_code) throws IOException { if (pdb_code == null) { throw new IOException ("no pdb code found - call setId() first!"); } /* now connect to DAS server */ DASStructureCall dasstructure = new DASStructureCall(serverurl); Structure structure = dasstructure.getStructure(pdb_code); return structure; } }