/*
 *                    BioJava development code
 *
 * This code may be freely distributed and modified under the
 * terms of the GNU Lesser General Public Licence.  This should
 * be distributed with the code.  If you do not have a copy,
 * see:
 *
 *      http://www.gnu.org/copyleft/lesser.html
 *
 * Copyright for this code is held jointly by the individual
 * authors.  These should be listed in @author doc comments.
 *
 * For more information on the BioJava project and its aims,
 * or to join the biojava-l mailing list, visit the home page
 * at:
 *
 *      http://www.biojava.org/
 *
 */

package org.biojava.bio.seq.db.emblcd;

import java.io.File;
import java.io.IOException;
import java.net.URL;

import junit.framework.TestCase;

/**
 * <code>EntryNamRandomAccessTest</code> is a unit test of random
 * access reading the binary entrynam.idx file type.
 *
 * @author Keith James
 * @since 1.2
 */
public class EntryNamRandomAccessTest extends TestCase
{
    protected EntryNamRandomAccess rand;

    protected String [] seqID;
    protected long []   rPos;
    protected long []   sPos;
    protected int  []   fileNum;

    public EntryNamRandomAccessTest(String name)
    {
        super(name);
    }

    protected void setUp() throws Exception
    {
        URL url = EntryNamRandomAccessTest.class.getResource("entrynam.idx");
        File  f = new File(url.getFile());

        rand = new EntryNamRandomAccess(f, 300, 30, 30);

        // First 10 sequence IDs.
        seqID   = new String [] {"NMA0001", "NMA0003", "NMA0004", "NMA0007", "NMA0011",
                                 "NMA0012", "NMA0013", "NMA0020", "NMA0021", "NMA0022" };

        // First 10 sequence byte offsets. There is more than one 0
        // byte offset because the database consists of more than one
        // sequence file.
        rPos    = new long [] { 0, 917, 1097, 1811, 0, 156, 270, 2379, 0, 283};

        // First 10 sequence file numbers.
        fileNum = new int [] { 1, 1, 1, 1, 2, 2, 2, 2, 3, 3 };
    }

    protected void tearDown() throws Exception
    {
        rand.close();
    }

    public void testFindRecord() throws IOException
    {
        for (int i = 0; i < 10; i++)
        {
            Object [] rec = rand.findRecord(seqID[i]);

            assertEquals(seqID[i],     (String)  rec[0]);
            assertEquals(rPos[i],     ((Long)    rec[1]).longValue());
            assertEquals(0,           ((Long)    rec[2]).longValue());
            assertEquals(fileNum[i],  ((Integer) rec[3]).intValue());
        }
    }

    public void testGetFile()
    {
        assertEquals("entrynam.idx", rand.getFile().getName());
    }
}