BLASTX 2.0a19MP-WashU [05-Feb-1998] [Build sol2.5-ultra 01:47:30 05-Feb-1998] Reference: Gish, Warren (1994-1997). unpublished. Gish, Warren and David J. States (1993). Identification of protein coding regions by database similarity search. Nat. Genet. 3:266-72. Notice: statistical significance is estimated under the assumption that the equivalent of one entire reading frame in the query sequence codes for protein and that significant alignments will involve only coding reading frames. Query= U51677 (2575 letters) Translating both strands of query sequence in all 6 reading frames Database: swissprot 72,615 sequences; 26,335,942 total letters. Searching....10....20....30....40....50....60....70....80....90....100% done Smallest Sum Reading High Probability Sequences producing High-scoring Segment Pairs: Frame Score P(N) N sp|P09429|HMG1_HUMAN HIGH MOBILITY GROUP PROTEIN HMG1 ... +2 311 5.0e-108 4 sp|P10103|HMG1_BOVIN HIGH MOBILITY GROUP PROTEIN HMG1 ... +2 311 1.3e-107 4 sp|P07155|HMG1_MOUSE HIGH MOBILITY GROUP PROTEIN HMG1 ... +2 311 2.7e-107 4 sp|P12682|HMG1_PIG HIGH MOBILITY GROUP PROTEIN HMG1 ... +2 306 4.6e-107 4 >sp|P09429|HMG1_HUMAN HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1). Length = 214 Plus Strand HSPs: Score = 311 (109.5 bits), Expect = 5.0e-108, Sum P(4) = 5.0e-108 Identities = 58/58 (100%), Positives = 58/58 (100%), Frame = +2 Query: 971 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 1144 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK Sbjct: 99 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 156 Score = 303 (106.7 bits), Expect = 5.0e-108, Sum P(4) = 5.0e-108 Identities = 59/59 (100%), Positives = 59/59 (100%), Frame = +1 Query: 2146 KDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE 2322 KDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE Sbjct: 156 KDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE 214 Score = 276 (97.2 bits), Expect = 5.0e-108, Sum P(4) = 5.0e-108 Identities = 50/54 (92%), Positives = 50/54 (92%), Frame = +1 Query: 4 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGLK 165 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK K Sbjct: 1 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAK 54 Score = 265 (93.3 bits), Expect = 5.0e-108, Sum P(4) = 5.0e-108 Identities = 52/56 (92%), Positives = 52/56 (92%), Frame = +3 Query: 330 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP*VSCLFL 497 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP S FL Sbjct: 50 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP--SAFFL 103 Score = 80 (28.2 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31 Identities = 18/60 (30%), Positives = 30/60 (50%), Frame = +2 Query: 971 SAFFLFCSEYRPKIKGEHPGLSIG--DVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 1144 S++ F R + K +HP S+ + +KK E W +A +K +E A K +YE+ Sbjct: 13 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 72 Score = 65 (22.9 bits), Expect = 6.7e-30, Sum P(2) = 6.7e-30 Identities = 14/45 (31%), Positives = 22/45 (48%), Frame = +1 Query: 13 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERW 147 DP P+ S++ F R + K +HP S+ + +KK E W Sbjct: 90 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIG--DVAKKLGEMW 132 Score = 42 (14.8 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24 Identities = 11/37 (29%), Positives = 19/37 (51%), Frame = +3 Query: 336 SAKEKGKFEDMAKADKARYEREMKTY-IPPKGETKKK 443 +A +K +E A K +YE+++ Y K + KK Sbjct: 136 AADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKK 172 >sp|P10103|HMG1_BOVIN HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1). Length = 214 Plus Strand HSPs: Score = 311 (109.5 bits), Expect = 1.3e-107, Sum P(4) = 1.3e-107 Identities = 58/58 (100%), Positives = 58/58 (100%), Frame = +2 Query: 971 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 1144 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK Sbjct: 99 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 156 Score = 299 (105.3 bits), Expect = 1.3e-107, Sum P(4) = 1.3e-107 Identities = 58/59 (98%), Positives = 59/59 (100%), Frame = +1 Query: 2146 KDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE 2322 KDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDE+EEEDDDDE Sbjct: 156 KDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEEEEEDDDDE 214 Score = 276 (97.2 bits), Expect = 1.3e-107, Sum P(4) = 1.3e-107 Identities = 50/54 (92%), Positives = 50/54 (92%), Frame = +1 Query: 4 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGLK 165 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK K Sbjct: 1 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAK 54 Score = 265 (93.3 bits), Expect = 1.3e-107, Sum P(4) = 1.3e-107 Identities = 52/56 (92%), Positives = 52/56 (92%), Frame = +3 Query: 330 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP*VSCLFL 497 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP S FL Sbjct: 50 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP--SAFFL 103 Score = 80 (28.2 bits), Expect = 4.9e-31, Sum P(2) = 4.9e-31 Identities = 18/60 (30%), Positives = 30/60 (50%), Frame = +2 Query: 971 SAFFLFCSEYRPKIKGEHPGLSIG--DVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 1144 S++ F R + K +HP S+ + +KK E W +A +K +E A K +YE+ Sbjct: 13 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 72 Score = 65 (22.9 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29 Identities = 14/45 (31%), Positives = 22/45 (48%), Frame = +1 Query: 13 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERW 147 DP P+ S++ F R + K +HP S+ + +KK E W Sbjct: 90 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIG--DVAKKLGEMW 132 Score = 42 (14.8 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24 Identities = 11/37 (29%), Positives = 19/37 (51%), Frame = +3 Query: 336 SAKEKGKFEDMAKADKARYEREMKTY-IPPKGETKKK 443 +A +K +E A K +YE+++ Y K + KK Sbjct: 136 AADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKK 172 >sp|P07155|HMG1_MOUSE HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1) (AMPHOTERIN) (HEPARIN-BINDING PROTEIN P30). Length = 214 Plus Strand HSPs: Score = 311 (109.5 bits), Expect = 2.7e-107, Sum P(4) = 2.7e-107 Identities = 58/58 (100%), Positives = 58/58 (100%), Frame = +2 Query: 971 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 1144 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK Sbjct: 99 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 156 Score = 296 (104.2 bits), Expect = 2.7e-107, Sum P(4) = 2.7e-107 Identities = 57/59 (96%), Positives = 59/59 (100%), Frame = +1 Query: 2146 KDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE 2322 KDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEE+DEEDEEDEEEEE+EEDEDEEEDDDDE Sbjct: 156 KDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEEEDEDEEEDDDDE 214 Score = 276 (97.2 bits), Expect = 2.7e-107, Sum P(4) = 2.7e-107 Identities = 50/54 (92%), Positives = 50/54 (92%), Frame = +1 Query: 4 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGLK 165 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK K Sbjct: 1 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAK 54 Score = 265 (93.3 bits), Expect = 2.7e-107, Sum P(4) = 2.7e-107 Identities = 52/56 (92%), Positives = 52/56 (92%), Frame = +3 Query: 330 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP*VSCLFL 497 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP S FL Sbjct: 50 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP--SAFFL 103 Score = 114 (40.1 bits), Expect = 1.4e-57, Sum P(3) = 1.4e-57 Identities = 25/63 (39%), Positives = 43/63 (68%), Frame = +1 Query: 2146 KDIAAYRAKGKPD-AAKKGVVKAEKSKK---KKEEEEDEEDEEDEEEEEDEEDEDEEEDD 2313 K A + K + D AA + K + +KK K E+ + +++EED+EE+E++E+E+EEE+D Sbjct: 145 KKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEEED 204 Query: 2314 DDE 2322 +DE Sbjct: 205 EDE 207 Score = 80 (28.2 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30 Identities = 18/60 (30%), Positives = 30/60 (50%), Frame = +2 Query: 971 SAFFLFCSEYRPKIKGEHPGLSIG--DVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 1144 S++ F R + K +HP S+ + +KK E W +A +K +E A K +YE+ Sbjct: 13 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 72 Score = 65 (22.9 bits), Expect = 3.8e-29, Sum P(2) = 3.8e-29 Identities = 14/45 (31%), Positives = 22/45 (48%), Frame = +1 Query: 13 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERW 147 DP P+ S++ F R + K +HP S+ + +KK E W Sbjct: 90 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIG--DVAKKLGEMW 132 Score = 42 (14.8 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24 Identities = 11/37 (29%), Positives = 19/37 (51%), Frame = +3 Query: 336 SAKEKGKFEDMAKADKARYEREMKTY-IPPKGETKKK 443 +A +K +E A K +YE+++ Y K + KK Sbjct: 136 AADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKK 172 >sp|P12682|HMG1_PIG HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1). Length = 214 Plus Strand HSPs: Score = 306 (107.7 bits), Expect = 4.6e-107, Sum P(4) = 4.6e-107 Identities = 57/58 (98%), Positives = 57/58 (98%), Frame = +2 Query: 971 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 1144 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK PYEKKAAKLKEKYEK Sbjct: 99 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKHPYEKKAAKLKEKYEK 156 Score = 299 (105.3 bits), Expect = 4.6e-107, Sum P(4) = 4.6e-107 Identities = 58/59 (98%), Positives = 59/59 (100%), Frame = +1 Query: 2146 KDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE 2322 KDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDE+EEEDDDDE Sbjct: 156 KDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEEEEEDDDDE 214 Score = 276 (97.2 bits), Expect = 4.6e-107, Sum P(4) = 4.6e-107 Identities = 50/54 (92%), Positives = 50/54 (92%), Frame = +1 Query: 4 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGLK 165 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK K Sbjct: 1 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAK 54 Score = 265 (93.3 bits), Expect = 4.6e-107, Sum P(4) = 4.6e-107 Identities = 52/56 (92%), Positives = 52/56 (92%), Frame = +3 Query: 330 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP*VSCLFL 497 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP S FL Sbjct: 50 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP--SAFFL 103 Score = 80 (28.2 bits), Expect = 4.9e-31, Sum P(2) = 4.9e-31 Identities = 18/60 (30%), Positives = 30/60 (50%), Frame = +2 Query: 971 SAFFLFCSEYRPKIKGEHPGLSIG--DVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 1144 S++ F R + K +HP S+ + +KK E W +A +K +E A K +YE+ Sbjct: 13 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 72 Score = 65 (22.9 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29 Identities = 14/45 (31%), Positives = 22/45 (48%), Frame = +1 Query: 13 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERW 147 DP P+ S++ F R + K +HP S+ + +KK E W Sbjct: 90 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIG--DVAKKLGEMW 132 Score = 42 (14.8 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24 Identities = 11/37 (29%), Positives = 19/37 (51%), Frame = +3 Query: 336 SAKEKGKFEDMAKADKARYEREMKTY-IPPKGETKKK 443 +A +K +E A K +YE+++ Y K + KK Sbjct: 136 AADDKHPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKK 172 Parameters: ctxfactor=6.00 E=10 Query ----- As Used ----- ----- Computed ---- Frame MatID Matrix name Lambda K H Lambda K H Std. 0 BLOSUM62 0.318 0.135 0.401 +3 0 BLOSUM62 0.318 0.135 0.401 0.374 0.168 0.632 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a +2 0 BLOSUM62 0.318 0.135 0.401 0.357 0.161 0.556 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a +1 0 BLOSUM62 0.318 0.135 0.401 0.358 0.161 0.586 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a -1 0 BLOSUM62 0.318 0.135 0.401 0.357 0.159 0.555 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a -2 0 BLOSUM62 0.318 0.135 0.401 0.361 0.163 0.576 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a -3 0 BLOSUM62 0.318 0.135 0.401 0.352 0.155 0.521 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a Query Frame MatID Length Eff.Length E S W T X E2 S2 +3 0 857 857 10. 77 3 12 22 0.11 36 37 0.10 40 +2 0 858 858 10. 77 3 12 22 0.11 36 37 0.10 40 +1 0 858 858 10. 77 3 12 22 0.11 36 37 0.10 40 -1 0 858 858 10. 77 3 12 22 0.11 36 37 0.10 40 -2 0 858 858 10. 77 3 12 22 0.11 36 37 0.10 40 -3 0 857 857 10. 77 3 12 22 0.11 36 37 0.10 40 Statistics: Database: /dbEST1/wublast/database/swissprot/sprot.fa Title: swissprot Release date: unknown Posted date: 11:37 AM GMT Feb 21, 2000 Format: BLAST # of letters in database: 26,335,942 # of sequences in database: 72,615 # of database sequences satisfying E: 476 No. of states in DFA: 599 (59 KB) Total size of DFA: 635 KB (640 KB) Time to generate neighborhood: 0.08u 0.00s 0.08t Elapsed: 00:00:00 No. of threads or processors used: 2 Search cpu time: 216.45u 0.39s 216.84t Elapsed: 00:01:53 Total cpu time: 217.02u 0.56s 217.58t Elapsed: 00:01:55 Start: Mon Feb 21 12:12:16 2000 End: Mon Feb 21 12:14:11 2000 WARNINGS ISSUED: 1