karaf.base: /home/psgendb/BIRCHDEV/java/cytoscape/framework
JAVA_HOME: null
OpenCL was not initialized because it crashed on the previous attempt.
If you think it works now, remove disable-opencl.dummy manually from Cytoscape's configuration directory.
For more information on how to troubleshoot OpenCL, please refer to http://manual.cytoscape.org/en/stable/Cytoscape_and_OpenCL_GPU.html.
org.osgi.framework.BundleException: The framework has been shutdown.
	at org.apache.felix.framework.Felix.installBundle(Felix.java:2995)
	at org.apache.felix.framework.BundleContextImpl.installBundle(BundleContextImpl.java:167)
	at org.cytoscape.rest.internal.task.OSGiJAXRSManager.installBundleFromResource(OSGiJAXRSManager.java:266)
	at org.cytoscape.rest.internal.task.OSGiJAXRSManager.installBundlesFromResources(OSGiJAXRSManager.java:238)
	at org.cytoscape.rest.internal.task.OSGiJAXRSManager.installOSGiJAXRSBundles(OSGiJAXRSManager.java:126)
	at org.cytoscape.rest.internal.CyActivator.lambda$startCyREST$0(CyActivator.java:325)
	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
	at java.base/java.lang.Thread.run(Thread.java:834)
15:02:40.610 ERROR [FelixStartLevel] Bundle org.cytoscape.rest.cy-rest [109] Error stopping bundle. (java.lang.NullPointerException)
java.lang.NullPointerException
	at org.cytoscape.rest.internal.task.ResourceManager.unregisterResourceServices(ResourceManager.java:115)
	at org.cytoscape.rest.internal.CyActivator.shutDown(CyActivator.java:506)
	at org.cytoscape.service.util.AbstractCyActivator.stop(AbstractCyActivator.java:90)
	at org.apache.felix.framework.util.SecureAction.stopActivator(SecureAction.java:719)
	at org.apache.felix.framework.Felix.stopBundle(Felix.java:2636)
	at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1391)
	at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:308)
	at java.base/java.lang.Thread.run(Thread.java:834)
15:02:40.622 ERROR [FelixStartLevel] Bundle org.cytoscape.rest.cy-rest [109] Error stopping file:/home/psgendb/BIRCHDEV/java/cytoscape/apps/cy-rest-3.12.3.jar (org.osgi.framework.BundleException: Activator stop error in bundle org.cytoscape.rest.cy-rest [109].)
org.osgi.framework.BundleException: Activator stop error in bundle org.cytoscape.rest.cy-rest [109].
	at org.apache.felix.framework.Felix.stopBundle(Felix.java:2692)
	at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1391)
	at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:308)
	at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.lang.NullPointerException
	at org.cytoscape.rest.internal.task.ResourceManager.unregisterResourceServices(ResourceManager.java:115)
	at org.cytoscape.rest.internal.CyActivator.shutDown(CyActivator.java:506)
	at org.cytoscape.service.util.AbstractCyActivator.stop(AbstractCyActivator.java:90)
	at org.apache.felix.framework.util.SecureAction.stopActivator(SecureAction.java:719)
	at org.apache.felix.framework.Felix.stopBundle(Felix.java:2636)
	... 3 more
15:02:40.622 ERROR [FelixDispatchQueue] FrameworkEvent ERROR
org.osgi.framework.BundleException: Activator stop error in bundle org.cytoscape.rest.cy-rest [109].
	at org.apache.felix.framework.Felix.stopBundle(Felix.java:2692)
	at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1391)
	at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:308)
	at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.lang.NullPointerException
	at org.cytoscape.rest.internal.task.ResourceManager.unregisterResourceServices(ResourceManager.java:115)
	at org.cytoscape.rest.internal.CyActivator.shutDown(CyActivator.java:506)
	at org.cytoscape.service.util.AbstractCyActivator.stop(AbstractCyActivator.java:90)
	at org.apache.felix.framework.util.SecureAction.stopActivator(SecureAction.java:719)
	at org.apache.felix.framework.Felix.stopBundle(Felix.java:2636)
	... 3 more