2022/04/20 15:38:43:335 INFO Using appdir from command line: /home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/
2022/04/20 15:38:43:337 INFO Using appid from command line: jalview
2022/04/20 15:38:43:338 INFO Starting ...
2022/04/20 15:38:43:343 INFO ------------------ VM Info ------------------
2022/04/20 15:38:43:344 INFO -- OS Name: Linux
2022/04/20 15:38:43:344 INFO -- OS Arch: amd64
2022/04/20 15:38:43:344 INFO -- OS Vers: 3.10.0-1160.53.1.el7.x86_64
2022/04/20 15:38:43:344 INFO -- Java Vers: 1.8.0_322
2022/04/20 15:38:43:345 INFO -- Java Home: /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.322.b06-1.el7_9.x86_64/jre
2022/04/20 15:38:43:353 INFO -- Install4j Vers: null
2022/04/20 15:38:43:353 INFO -- Install4j Template Vers: 2.11.2.0_F188884b4_C2040e7e728
2022/04/20 15:38:43:353 INFO -- User Name: psgendb
2022/04/20 15:38:43:353 INFO -- User Home: /home/psgendb
2022/04/20 15:38:43:353 INFO -- Cur dir: /home/psgendb/BIRCHDEV/java/jalview-2.11.2.0
2022/04/20 15:38:43:354 INFO -- Launcher version: 1.8.3-1.2.12_JVL
2022/04/20 15:38:43:354 INFO -- startupFilesParameterString: 
2022/04/20 15:38:43:355 INFO ---------------------------------------------
2022/04/20 15:38:43:384 INFO Getdown starting [version=1.8.3-1.2.12_JVL, built=2022-03-02 16:59]
Failed to find '/channel.props' file at 'null'. Using class defaultProps.
Failed to load channel image logo.16=/default_images/jalview_logo-16.png
Failed to load channel image logo.32=/default_images/jalview_logo-32.png
Failed to load channel image logo.48=/default_images/jalview_logo-48.png
Failed to load channel image logo.64=/default_images/jalview_logo-64.png
Failed to load channel image logo.128=/default_images/jalview_logo-128.png
Failed to load channel image logo.256=/default_images/jalview_logo-256.png
Failed to load channel image logo.512=/default_images/jalview_logo-512.png
2022/04/20 15:38:43:398 INFO Checking whether we need to use a proxy...
2022/04/20 15:38:43:761 INFO Keep on top set to  [keep_on_top=true]
2022/04/20 15:38:43:864 INFO Displaying instant background image
2022/04/20 15:38:43:880 WARNING Tried to invokeAndWait but couldn't. Going to invokeLater instead [Exception=null]
2022/04/20 15:38:44:019 INFO Downloading 0 resources [totalBytes=0, maxConcurrent=10]
2022/04/20 15:38:44:024 INFO Testing whether proxy is needed, via: https://www.jalview.org/getdown/release/1.8/getdown.txt
2022/04/20 15:38:45:199 INFO No proxy appears to be needed.
2022/04/20 15:38:45:202 INFO Downloading 0 resources [totalBytes=0, maxConcurrent=10]
2022/04/20 15:38:45:206 INFO Able to lock for updates: true
2022/04/20 15:38:45:208 INFO Verifying application: https://www.jalview.org/getdown/release/1.8/
2022/04/20 15:38:45:208 INFO Version: -1
2022/04/20 15:38:45:209 INFO Class: jalview.bin.Jalview
2022/04/20 15:38:45:213 INFO Attempting to refetch 'digest.txt' from 'https://www.jalview.org/getdown/release/1.8/digest.txt'.
2022/04/20 15:38:45:355 INFO No signing certs, not verifying digest.txt [path=digest.txt]
2022/04/20 15:38:45:357 INFO Attempting to refetch 'digest2.txt' from 'https://www.jalview.org/getdown/release/1.8/digest2.txt'.
2022/04/20 15:38:45:489 INFO No signing certs, not verifying digest.txt [path=digest2.txt]
2022/04/20 15:38:45:562 INFO Verified resources [count=64, size=40998k, duration=64ms]
2022/04/20 15:38:45:565 INFO Checking Java version [current=1080322, wantMin=1080000, wantMax=1089999]
2022/04/20 15:38:45:565 INFO Installing 0 downloaded resources:
2022/04/20 15:38:45:566 INFO Install completed.
2022/04/20 15:38:45:571 INFO Not setting proxy
2022/04/20 15:38:45:610 INFO Didn't find any custom environment variables, not setting any.
2022/04/20 15:38:45:610 INFO Running /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.322.b06-1.el7_9.x86_64/jre/bin/java
  -classpath
  /home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/jalview.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/JGoogleAnalytics_0.3.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/Jmol-NO_LOG4J-14.31.53.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/VARNAv3-93.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/VAqua5-patch.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/activation.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/apache-mime4j-0.6.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/axis.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/biojava-core-4.1.0.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/biojava-ontology-4.1.0.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/commons-codec-1.3.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/commons-discovery.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/commons-logging-1.1.1.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/getdown-core.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/groovy-all-2.4.21-indy.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/htsjdk-2.23.0.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/httpclient-4.0.3.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/httpcore-4.0.1.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/httpmime-4.0.3.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/intervalstore-v1.1.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/jabaws-min-client-NO_LOG4J-2.2.0.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/java-json.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/jaxrpc.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/jersey-client-1.19.4.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/jersey-core-1.19.4.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/jersey-json-1.19.4.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/jetty-http-9.2.10.v20150310.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/jetty-io-9.2.10.v20150310.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/jetty-server-9.2.10.v20150310.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/jetty-util-9.2.10.v20150310.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/jfreesvg-2.1.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/jhall.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/json_simple-1.1.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/jsoup-1.8.1.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/jsr311-api-1.1.1.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/jswingreader-0.3.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/libquaqua-8.0.jnilib.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/libquaqua64-8.0.jnilib.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/log4j-api-2.17.1.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/log4j-core-2.17.1.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/log4j-slf4j18-impl-2.17.1.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/mail.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/miglayout-4.0-swing.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/quaqua-filechooser-only-8.0.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/regex.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/saaj.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/servlet-api-3.1.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/slf4j-api-1.7.32.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/vamsas-client.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/wsdl4j.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/xercesImpl.jar:/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0/release/xml-apis.jar
  -Dcom.threerings.getdown=true
  -Dsys.install4jVersion=9.0.5
  -Dinstaller_template_version=2.11.2.0_F188884b4_C2040e7e728
  -Dlauncher_version=1.8.3-1.2.12_JVL
  -Dgetdownappdir=/home/psgendb/BIRCHDEV/java/jalview-2.11.2.0
  -Xmx34359738368
  jalview.bin.Jalview
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".SLF4J: Defaulting to no-operation (NOP) logger implementationSLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.INFO - Loaded Sequence Ontology from so-xp-simple.obo.zip (182ms)INFO - Getting messages for lang: en_USWARN - Error setting APQHandlers: java.lang.NoClassDefFoundError: java/awt/desktop/AboutHandlerINFO - Cannot set TaskbarERROR - java/awt/TaskbarInvalid or corrupt date in property 'JALVIEW_NEWS_RSS_LASTMODIFIED' : value was '10 Mar 2022, 05:28:05'Apr 20, 2022 3:38:49 PM compbio.ws.client.Jws2Client connectToRegistryINFO: Connected to RegistryWS successfully!Warning - overwriting a sequenceSetId for a viewport!Apr 20, 2022 3:38:49 PM compbio.ws.client.Jws2Client connectINFO: Connected successfully!Allocating Jmol Viewer: Apr 20, 2022 3:38:51 PM compbio.ws.client.Jws2Client connectINFO: Connected successfully!