Index of /~psgendb/birchhomedir/BIRCHDEV/lib-linux-x86_64/trinity/util/misc

[ICO]NameLast modifiedSizeDescription

[PARENTDIR]Parent Directory   -  
[   ]validate_fastqs.py 2022-03-11 09:18 2.6K 
[   ]trinity_trans_matrix..>2022-03-11 09:18 1.7K 
[   ]trinity_component_di..>2022-03-11 09:18 2.2K 
[   ]transdecoder_pep_to_..>2022-03-11 09:18 1.5K 
[   ]transcript_gff3_to_b..>2022-03-11 09:18 2.0K 
[   ]transcript_fasta_to_..>2022-03-11 09:18 5.7K 
[   ]transcript_coverage_..>2022-03-11 09:18 4.5K 
[   ]testUnlimitStacksize.pl2022-03-11 09:18 1.8K 
[   ]tblastn_wrapper.pl 2022-03-11 09:18 628  
[   ]tab_to_fasta.pl 2022-03-11 09:18 278  
[   ]tab_to_fastQ.pl 2022-03-11 09:18 282  
[   ]strip_fasta_header.pl 2022-03-11 09:18 442  
[DIR]splice_path_analysis/ 2022-03-11 09:18 -  
[   ]sort_fastq.pl 2022-03-11 09:18 1.2K 
[   ]sixFrameTranslation.pl 2022-03-11 09:18 780  
[   ]simulate_reads_sam_a..>2022-03-11 09:18 23K 
[   ]simulate_illuminaPE_..>2022-03-11 09:18 4.0K 
[   ]simulate_illuminaPE_..>2022-03-11 09:18 9.1K 
[DIR]sim_test_framework/ 2022-03-11 09:18 -  
[   ]shuffle.pl 2022-03-11 09:18 212  
[   ]seqinfo_refseq_to_do..>2022-03-11 09:18 4.1K 
[   ]run_trimmomatic_qual..>2022-03-11 09:18 2.1K 
[   ]run_read_simulator_p..>2022-03-11 09:18 2.2K 
[   ]run_read_simulator_p..>2022-03-11 09:18 1.7K 
[   ]run_jellyfish.pl.bak 2023-09-16 13:40 1.4K 
[   ]run_jellyfish.pl 2023-09-16 13:52 1.7K 
[   ]run_bwasw_trinity.pl 2022-03-11 09:18 1.1K 
[   ]run_bwa.pl 2022-03-11 09:18 3.2K 
[   ]run_bowtie2.pl 2022-03-11 09:18 1.8K 
[   ]run_TOPHAT.pl 2022-03-11 09:18 1.8K 
[   ]run_STAR_via_samples..>2022-03-11 09:18 6.3K 
[   ]run_STAR.pl 2022-03-11 09:18 5.9K 
[   ]run_HiCpipe_bowtie.pl 2022-03-11 09:18 1.2K 
[   ]run_HISAT2_via_sampl..>2022-03-11 09:18 3.9K 
[   ]run_HISAT.pl 2022-03-11 09:18 4.8K 
[   ]run_GSNAP.pl 2022-03-11 09:18 4.2K 
[   ]run_DETONATE.pl 2022-03-11 09:18 2.3K 
[   ]row_to_column.pl 2022-03-11 09:18 306  
[   ]remove_cntrl_chars.pl 2022-03-11 09:18 105  
[   ]randomly_sample_PE_f..>2022-03-11 09:18 3.1K 
[   ]randomly_mutate_seqs.pl2022-03-11 09:18 4.1K 
[   ]prop_pair_sam_refine..>2022-03-11 09:18 1.9K 
[   ]process_minimap2_ali..>2022-03-11 09:18 2.4K 
[   ]process_GMAP_alignme..>2022-03-11 09:18 3.7K 
[   ]print_kmers.pl 2022-03-11 09:18 640  
[   ]print.pl 2022-03-11 09:18 867  
[   ]plot_strand_specific..>2022-03-11 09:18 5.2K 
[   ]plot_expressed_gene_..>2022-03-11 09:18 857  
[   ]plot_ExN50_statistic..>2022-03-11 09:18 783  
[   ]pairwise_kmer_conten..>2022-03-11 09:18 1.8K 
[   ]pair_up_fastq_files_..>2022-03-11 09:18 606  
[   ]pair_up_fastq_files_..>2022-03-11 09:18 584  
[   ]pair_up_fastq_files_..>2022-03-11 09:18 491  
[   ]organize_data_table_..>2022-03-11 09:18 439  
[   ]omp_iworm_thread_con..>2022-03-11 09:18 556  
[   ]nameSorted_SAM_to_pa..>2022-03-11 09:18 4.0K 
[   ]nameSorted_SAM_to_Fa..>2022-03-11 09:18 1.7K 
[   ]mpi_iworm_proc_conti..>2022-03-11 09:18 358  
[   ]merge_rsem_n_express..>2022-03-11 09:18 1.9K 
[   ]merge_blast_n_rsem_r..>2022-03-11 09:18 1.4K 
[   ]merge_RSEM_output_to..>2022-03-11 09:18 3.0K 
[   ]map_gtf_transcripts_..>2022-03-11 09:18 16K 
[   ]m8_blastclust.pl 2022-03-11 09:18 6.4K 
[   ]kmer_counter.pl 2022-03-11 09:18 1.0K 
[   ]join_expr_vals_singl..>2022-03-11 09:18 929  
[   ]join_by_left_col.pl 2022-03-11 09:18 827  
[   ]join_any.pl 2022-03-11 09:18 828  
[   ]jaccard_sam_pair_ref..>2022-03-11 09:18 2.7K 
[   ]iworm_welds_to_dot.pl 2022-03-11 09:18 575  
[DIR]iso_reco_analysis/ 2022-03-11 09:18 -  
[DIR]insilico_norm_kmer_h..>2022-03-11 09:18 -  
[   ]illustrate_ref_compa..>2022-03-11 09:18 4.7K 
[   ]identify_distal_isof..>2022-03-11 09:18 4.6K 
[   ]hicpipe_raw_converte..>2022-03-11 09:18 353  
[   ]gtf_to_introns.pl 2022-03-11 09:18 3.0K 
[   ]gtf_to_bed_format.pl 2022-03-11 09:18 1.8K 
[   ]gmap_native_to_forma..>2022-03-11 09:18 1.9K 
[   ]gmap_gff3_to_percent..>2022-03-11 09:18 1.8K 
[   ]gmap_gff3_to_percent..>2022-03-11 09:18 1.0K 
[   ]gmap_gff3_chimera_ja..>2022-03-11 09:18 4.7K 
[   ]gff3_to_genome_featu..>2022-03-11 09:18 2.5K 
[   ]gff3_to_genome_featu..>2022-03-11 09:18 4.5K 
[   ]gff3_file_utr_covera..>2022-03-11 09:18 6.7K 
[   ]gff3_file_to_cdna.pl 2022-03-11 09:18 3.0K 
[   ]get_welds_from_chrys..>2022-03-11 09:18 391  
[   ]get_path_nodes_from_..>2022-03-11 09:18 647  
[   ]get_longest_isoform_..>2022-03-11 09:18 1.7K 
[   ]get_GC_content_dist.pl 2022-03-11 09:18 1.5K 
[   ]genome_gff3_to_gene_..>2022-03-11 09:18 3.1K 
[   ]gene_to_shared_trans..>2022-03-11 09:18 2.0K 
[   ]gene_gff3_to_introns.pl2022-03-11 09:18 1.9K 
[   ]frag_to_bed.pl 2022-03-11 09:18 483  
[   ]frag_boundary_to_wig.pl2022-03-11 09:18 1.2K 
[   ]flattened_gff_n_geno..>2022-03-11 09:18 4.5K 
[   ]filter_similar_seqs_..>2022-03-11 09:18 7.8K 
[   ]filter_out_accs_from..>2022-03-11 09:18 1.1K 
[   ]fastq_unweave_pairs.pl 2022-03-11 09:18 1.2K 
[   ]fastq_stats.pl 2022-03-11 09:18 6.6K 
[   ]fastq_merge_sorted_t..>2022-03-11 09:18 2.1K 
[   ]fastq_interleave_pai..>2022-03-11 09:18 1.3K 
[   ]fastq_cleaner.pl 2022-03-11 09:18 1.5K 
[   ]fasta_write_sense_n_..>2022-03-11 09:18 632  
[   ]fasta_to_cmd_generat..>2022-03-11 09:18 3.2K 
[   ]fasta_seq_length.pl 2022-03-11 09:18 509  
[   ]fasta_remove_duplica..>2022-03-11 09:18 679  
[   ]fasta_filter_by_min_..>2022-03-11 09:18 558  
[   ]fasta_file_reformatt..>2022-03-11 09:18 464  
[   ]fastQ_top_N_records.pl 2022-03-11 09:18 644  
[   ]fastQ_rand_subset.re..>2022-03-11 09:18 3.3K 
[   ]fastQ_rand_subset.pl 2022-03-11 09:18 2.7K 
[   ]fastQ_rand_subset.SE..>2022-03-11 09:18 2.4K 
[   ]fastQ_append_acc.pl 2022-03-11 09:18 739  
[   ]fan_out_fasta_seqs_t..>2022-03-11 09:18 2.6K 
[   ]extract_fastQ_pairin..>2022-03-11 09:18 6.5K 
[   ]examine_weldmer_halv..>2022-03-11 09:18 2.3K 
[   ]examine_strand_speci..>2022-03-11 09:18 2.7K 
[   ]examine_iworm_FL_acr..>2022-03-11 09:18 2.4K 
[   ]ensure_paired_end_ba..>2022-03-11 09:18 936  
[   ]determine_RF_strand_..>2022-03-11 09:18 2.4K 
[   ]describe_SAM_read_fl..>2022-03-11 09:18 2.0K 
[   ]decode_SAM_flag_valu..>2022-03-11 09:18 1.6K 
[   ]count_trans_per_comp..>2022-03-11 09:18 1.1K 
[   ]count_number_fasta_s..>2022-03-11 09:18 348  
[   ]count_matrix_feature..>2022-03-11 09:18 877  
[   ]count_iso_per_gene_d..>2022-03-11 09:18 668  
[   ]count_features_given..>2022-03-11 09:18 769  
[   ]count_N50_given_MIN_..>2022-03-11 09:18 1.7K 
[   ]convert_fasta_identi..>2022-03-11 09:18 685  
[   ]contig_ExN50_statist..>2022-03-11 09:18 4.0K 
[   ]component_to_graph_d..>2022-03-11 09:18 4.0K 
[   ]compare_bflies.pl 2022-03-11 09:18 1.9K 
[   ]compare_FL_stats.pl 2022-03-11 09:18 1.3K 
[   ]combined_nameSorted_..>2022-03-11 09:18 2.7K 
[   ]collate_fqs.pl 2022-03-11 09:18 3.7K 
[   ]chrys_graph_to_dot.pl 2022-03-11 09:18 492  
[   ]check_fastQ_pair_ord..>2022-03-11 09:18 1.4K 
[   ]check_chrysalis_grap..>2022-03-11 09:18 1.0K 
[   ]cdna_fasta_file_to_t..>2022-03-11 09:18 768  
[   ]cdhit_examine_isofor..>2022-03-11 09:18 1.3K 
[   ]cat_require_newlines.pl2022-03-11 09:18 223  
[   ]capture_orig_n_unmap..>2022-03-11 09:18 5.5K 
[DIR]blat_util/ 2022-03-11 09:18 -  
[   ]blastn_wrapper.pl 2022-03-11 09:18 627  
[   ]blast_outfmt6_group_..>2022-03-11 09:18 3.0K 
[   ]blast_outfmt6_group_..>2022-03-11 09:18 4.3K 
[   ]blast_outfmt6_group_..>2022-03-11 09:18 4.8K 
[DIR]bam_gene_tests/ 2022-03-11 09:18 -  
[   ]average.pl 2022-03-11 09:18 804  
[   ]analyze_blastPlus_to..>2022-03-11 09:18 1.2K 
[   ]analyze_blastPlus_to..>2022-03-11 09:18 2.1K 
[   ]analyze_blastPlus_to..>2022-03-11 09:18 5.9K 
[   ]analyze_blastPlus_to..>2022-03-11 09:18 2.6K 
[DIR]altsplice_simulation..>2022-03-11 09:18 -  
[DIR]alt_GG_read_partitio..>2022-03-11 09:18 -  
[   ]allele_simulator.pl 2022-03-11 09:18 2.1K 
[   ]align_reads_launch_i..>2022-03-11 09:18 1.2K 
[   ]alexie_analyze_blast.pl2022-03-11 09:18 35K 
[   ]acc_list_to_fasta_en..>2022-03-11 09:18 4.5K 
[   ]Trinity_node_seq_ext..>2022-03-11 09:18 1.9K 
[   ]Trinity_genome_align..>2022-03-11 09:18 9.4K 
[   ]TophatCufflinksWrapp..>2022-03-11 09:18 4.8K 
[   ]TPM_weighted_gene_le..>2022-03-11 09:18 4.6K 
[DIR]TEST_SUPPORT/ 2022-03-11 09:18 -  
[   ]SRA_to_fastq.pl 2022-03-11 09:18 1.6K 
[   ]SRA_to_fastq.notes 2022-03-11 09:18 77  
[   ]SAM_to_fasta.pl 2022-03-11 09:18 700  
[   ]SAM_to_bed.pl 2022-03-11 09:18 1.5K 
[   ]SAM_toString.pl 2022-03-11 09:18 1.0K 
[   ]SAM_sortAny_to_count..>2022-03-11 09:18 4.3K 
[   ]SAM_show_alignment.s..>2022-03-11 09:18 4.0K 
[   ]SAM_show_alignment.pl 2022-03-11 09:18 7.4K 
[   ]SAM_pair_to_bed.pl 2022-03-11 09:18 1.9K 
[   ]SAM_nameSorted_to_un..>2022-03-11 09:18 7.5K 
[   ]SAM_intron_extractor.pl2022-03-11 09:18 3.5K 
[   ]SAM_coordsorted_max_..>2022-03-11 09:18 1.0K 
[DIR]PerlLib/ 2022-03-11 09:18 -  
[   ]N50.pl 2022-03-11 09:18 895  
[DIR]Monarch_util/ 2022-03-11 09:18 -  
[TXT]Monarch 2022-03-11 09:18 8.7K 
[   ]HiCpipe_nameSortedSa..>2022-03-11 09:18 2.3K 
[   ]ButterflyFastaToGrap..>2022-03-11 09:18 1.7K 
[DIR]Artemis/ 2022-03-11 09:18 -