Index of /~psgendb/birchhomedir/BIRCHDEV/lib-linux-x86_64/trinityrnaseq-v2.14.0/trinity-plugins/bamsifter/htslib/test

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory   -  
[ ]auxf#values.sam 2022-03-11 09:18 751  
[ ]auxf#values_java.cram 2022-03-11 09:18 5.0K 
[ ]auxf.fa 2022-03-11 09:18 29  
[ ]auxf.fa.fai 2022-03-11 09:18 18  
[TXT]bgziptest.txt 2022-03-11 09:18 15  
[ ]bgziptest.txt.gz 2022-03-11 09:18 181  
[ ]bgziptest.txt.gz.gzi 2022-03-11 09:18 88  
[ ]c1#bounds.sam 2022-03-11 09:18 148  
[ ]c1#clip.sam 2022-03-11 09:18 337  
[ ]c1#noseq.sam 2022-03-11 09:18 433  
[ ]c1#pad1.sam 2022-03-11 09:18 388  
[ ]c1#pad2.sam 2022-03-11 09:18 527  
[ ]c1#pad3.sam 2022-03-11 09:18 665  
[ ]c1#unknown.sam 2022-03-11 09:18 429  
[ ]c1.fa 2022-03-11 09:18 15  
[ ]c1.fa.fai 2022-03-11 09:18 14  
[ ]c2#pad.sam 2022-03-11 09:18 847  
[ ]c2.fa 2022-03-11 09:18 14  
[ ]c2.fa.fai 2022-03-11 09:18 12  
[ ]ce#1.sam 2022-03-11 09:18 341  
[ ]ce#2.sam 2022-03-11 09:18 645  
[ ]ce#5.sam 2022-03-11 09:18 1.8K 
[ ]ce#5b.sam 2022-03-11 09:18 1.8K 
[ ]ce#5b_java.cram 2022-03-11 09:18 6.6K 
[ ]ce#1000.sam 2022-03-11 09:18 315K 
[ ]ce#large_seq.sam 2022-03-11 09:18 2.0M 
[ ]ce#supp.sam 2022-03-11 09:18 547  
[ ]ce#tag_depadded.sam 2022-03-11 09:18 1.6K 
[ ]ce#tag_padded.sam 2022-03-11 09:18 1.6K 
[ ]ce#unmap.sam 2022-03-11 09:18 1.3K 
[ ]ce#unmap1.sam 2022-03-11 09:18 2.7K 
[ ]ce#unmap2.sam 2022-03-11 09:18 5.4K 
[ ]ce.fa 2022-03-11 09:18 1.0M 
[ ]ce.fa.fai 2022-03-11 09:18 230  
[ ]colons.bam 2022-03-11 09:18 268  
[ ]colons.bam.bai 2022-03-11 09:18 424  
[ ]compare_sam.pl 2022-03-11 09:18 6.3K 
[ ]cross_validate.sh 2022-03-11 09:18 4.2K 
[TXT]emptyfile 2022-03-11 09:18 0  
[TXT]faidx.fa 2022-03-11 09:18 289  
[ ]fastqs.fq 2022-03-11 09:18 47K 
[TXT]fastqs_README.txt 2022-03-11 09:18 4.8K 
[ ]fieldarith 2022-05-13 14:29 2.8M 
[TXT]fieldarith.c 2022-03-11 09:18 2.4K 
[ ]fieldarith.o 2022-05-13 14:29 18K 
[ ]fieldarith.sam 2022-03-11 09:18 916  
[TXT]formatcols.vcf 2022-03-11 09:18 240  
[TXT]formatmissing-out.vcf 2022-03-11 09:18 226  
[TXT]formatmissing.vcf 2022-03-11 09:18 226  
[DIR]fuzz/ 2022-05-13 14:30 -  
[ ]header_syms.pl 2022-03-11 09:18 3.5K 
[ ]hfile 2022-05-13 14:29 2.8M 
[TXT]hfile.c 2022-03-11 09:18 12K 
[ ]hfile.o 2022-05-13 14:29 95K 
[ ]hts_endian 2022-05-13 14:29 35K 
[TXT]hts_endian.c 2022-03-11 09:18 17K 
[ ]hts_endian.o 2022-05-13 14:29 65K 
[ ]index.bam.bai 2022-03-11 09:18 776  
[ ]index.bam.csi 2022-03-11 09:18 130  
[ ]index.bcf.csi 2022-03-11 09:18 144  
[ ]index.cram.crai 2022-03-11 09:18 83  
[ ]index.sam 2022-03-11 09:18 53K 
[ ]index.sam.gz.bai 2022-03-11 09:18 776  
[ ]index.sam.gz.csi 2022-03-11 09:18 130  
[TXT]index.vcf 2022-03-11 09:18 67K 
[ ]index.vcf.gz.csi 2022-03-11 09:18 159  
[ ]index.vcf.gz.tbi 2022-03-11 09:18 213  
[DIR]longrefs/ 2022-03-11 09:18 -  
[DIR]maintainer/ 2022-03-11 09:18 -  
[ ]md#1.sam 2022-03-11 09:18 1.0K 
[ ]md.fa 2022-03-11 09:18 45  
[ ]md.fa.fai 2022-03-11 09:18 13  
[DIR]mpileup/ 2022-03-11 09:18 -  
[ ]no_hdr_sq_1.bam 2022-03-11 09:18 1.7K 
[ ]no_hdr_sq_1.bam.csi 2022-03-11 09:18 94  
[ ]no_hdr_sq_1.expected..>2022-03-11 09:18 2.0K 
[TXT]noroundtrip-out.vcf 2022-03-11 09:18 325  
[TXT]noroundtrip.vcf 2022-03-11 09:18 271  
[ ]pileup 2022-05-13 14:30 2.8M 
[TXT]pileup.c 2022-03-11 09:18 6.8K 
[ ]pileup.o 2022-05-13 14:29 35K 
[ ]range.bam 2022-03-11 09:18 13K 
[ ]range.bam.bai 2022-03-11 09:18 360  
[ ]range.cram 2022-03-11 09:18 11K 
[ ]range.cram.crai 2022-03-11 09:18 94  
[ ]range.out 2022-03-11 09:18 3.4K 
[ ]realn01.fa 2022-03-11 09:18 719  
[ ]realn01.fa.fai 2022-03-11 09:18 21  
[ ]realn01.sam 2022-03-11 09:18 1.8K 
[ ]realn01_exp-a.sam 2022-03-11 09:18 2.1K 
[ ]realn01_exp-e.sam 2022-03-11 09:18 2.1K 
[ ]realn01_exp.sam 2022-03-11 09:18 2.1K 
[ ]realn02-r.sam 2022-03-11 09:18 3.7K 
[ ]realn02.fa 2022-03-11 09:18 4.2K 
[ ]realn02.fa.fai 2022-03-11 09:18 17  
[ ]realn02.sam 2022-03-11 09:18 2.8K 
[ ]realn02_exp-a.sam 2022-03-11 09:18 3.7K 
[ ]realn02_exp-e.sam 2022-03-11 09:18 3.7K 
[ ]realn02_exp.sam 2022-03-11 09:18 3.7K 
[ ]sam 2022-05-13 14:30 2.9M 
[TXT]sam.c 2022-03-11 09:18 62K 
[ ]sam.o 2022-05-13 14:30 265K 
[ ]simple_test_driver.sh 2022-03-11 09:18 5.5K 
[ ]tabix.out 2022-03-11 09:18 98  
[DIR]tabix/ 2022-03-11 09:18 -  
[ ]test-bcf-sr 2022-05-13 14:30 3.5M 
[TXT]test-bcf-sr.c 2022-03-11 09:18 4.8K 
[ ]test-bcf-sr.o 2022-05-13 14:30 55K 
[ ]test-bcf-sr.pl 2022-03-11 09:18 17K 
[ ]test-bcf-translate 2022-05-13 14:30 3.3M 
[TXT]test-bcf-translate.c 2022-03-11 09:18 8.7K 
[ ]test-bcf-translate.o 2022-05-13 14:30 30K 
[ ]test-bcf-translate.out 2022-03-11 09:18 869  
[ ]test-logging.pl 2022-03-11 09:18 2.5K 
[ ]test-parse-reg 2022-05-13 14:30 2.8M 
[TXT]test-parse-reg.c 2022-03-11 09:18 6.9K 
[ ]test-parse-reg.o 2022-05-13 14:30 35K 
[ ]test-regidx 2022-05-13 14:30 2.9M 
[TXT]test-regidx.c 2022-03-11 09:18 16K 
[ ]test-regidx.o 2022-05-13 14:30 82K 
[ ]test-vcf-api 2022-05-13 14:30 3.3M 
[TXT]test-vcf-api.c 2022-03-11 09:18 18K 
[ ]test-vcf-api.o 2022-05-13 14:30 102K 
[ ]test-vcf-api.out 2022-03-11 09:18 2.0K 
[TXT]test-vcf-hdr-in.vcf 2022-03-11 09:18 2.0K 
[TXT]test-vcf-hdr.out 2022-03-11 09:18 1.3K 
[ ]test-vcf-sweep 2022-05-13 14:30 3.3M 
[TXT]test-vcf-sweep.c 2022-03-11 09:18 3.7K 
[ ]test-vcf-sweep.o 2022-05-13 14:30 18K 
[ ]test-vcf-sweep.out 2022-03-11 09:18 92  
[ ]test.pl 2022-03-11 09:18 35K 
[ ]test_bgzf 2022-05-13 14:30 2.9M 
[TXT]test_bgzf.c 2022-03-11 09:18 31K 
[ ]test_bgzf.o 2022-05-13 14:30 132K 
[ ]test_index 2022-05-13 14:30 3.3M 
[TXT]test_index.c 2022-03-11 09:18 2.8K 
[ ]test_index.o 2022-05-13 14:30 18K 
[ ]test_kstring 2022-05-13 14:30 31K 
[TXT]test_kstring.c 2022-03-11 09:18 5.6K 
[ ]test_kstring.o 2022-05-13 14:30 54K 
[ ]test_realn 2022-05-13 14:30 2.9M 
[TXT]test_realn.c 2022-03-11 09:18 4.9K 
[ ]test_realn.o 2022-05-13 14:30 32K 
[ ]test_str2int 2022-05-13 14:30 27K 
[TXT]test_str2int.c 2022-03-11 09:18 5.9K 
[ ]test_str2int.o 2022-05-13 14:30 47K 
[ ]test_view 2022-05-13 14:30 3.3M 
[TXT]test_view.c 2022-03-11 09:18 14K 
[ ]test_view.o 2022-05-13 14:30 100K 
[TXT]thrash_threads1.c 2022-03-11 09:18 1.6K 
[TXT]thrash_threads2.c 2022-03-11 09:18 1.6K 
[TXT]thrash_threads3.c 2022-03-11 09:18 1.7K 
[TXT]thrash_threads4.c 2022-03-11 09:18 2.2K 
[TXT]thrash_threads5.c 2022-03-11 09:18 2.1K 
[TXT]thrash_threads6.c 2022-03-11 09:18 3.3K 
[TXT]thrash_threads7.c 2022-03-11 09:18 3.6K 
[TXT]thread_pool.md 2022-03-11 09:18 2.9K 
[ ]xx#MD.sam 2022-03-11 09:18 1.0K 
[ ]xx#MD2.sam 2022-03-11 09:18 1.1K 
[ ]xx#blank.sam 2022-03-11 09:18 71  
[ ]xx#large_aux.sam 2022-03-11 09:18 884K 
[ ]xx#large_aux2.sam 2022-03-11 09:18 651  
[ ]xx#large_aux_java.cram 2022-03-11 09:18 22K 
[ ]xx#minimal.sam 2022-03-11 09:18 254  
[ ]xx#pair.sam 2022-03-11 09:18 304  
[ ]xx#repeated.sam 2022-03-11 09:18 298  
[ ]xx#rg.sam 2022-03-11 09:18 517  
[ ]xx#tlen.sam 2022-03-11 09:18 1.0K 
[ ]xx#tlen2.sam 2022-03-11 09:18 1.1K 
[ ]xx#triplet.sam 2022-03-11 09:18 267  
[ ]xx#unsorted.sam 2022-03-11 09:18 320  
[ ]xx.fa 2022-03-11 09:18 86  
[ ]xx.fa.fai 2022-03-11 09:18 44