Index of /~psgendb/birchhomedir/BIRCHDEV/lib-linux-x86_64/trinityrnaseq-v2.14.0/util/support_scripts

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory   -  
[ ]ExitTester.jar 2022-03-11 09:18 8.1K 
[ ]GG_partitioned_trini..>2022-03-11 09:18 636  
[ ]SAM_coordSorted_frag..>2022-03-11 09:18 2.0K 
[ ]SAM_coordSorted_frag..>2022-03-11 09:18 3.2K 
[ ]SAM_extract_properly..>2022-03-11 09:18 817  
[ ]SAM_extract_uniquely..>2022-03-11 09:18 1.2K 
[ ]SAM_filter_out_unmap..>2022-03-11 09:18 952  
[ ]SAM_ordered_pair_jac..>2022-03-11 09:18 2.5K 
[ ]SAM_set_transcribed_..>2022-03-11 09:18 2.1K 
[ ]SAM_strand_separator.pl2022-03-11 09:18 3.7K 
[ ]SAM_to_frag_coords.pl 2022-03-11 09:18 8.6K 
[ ]add_LR_reads_to_iwor..>2022-03-11 09:18 1.3K 
[ ]annotate_chrysalis_w..>2022-03-11 09:18 1.1K 
[ ]batch_cmds.pl 2022-03-11 09:18 1.5K 
[ ]bowtie2_wrapper.pl 2022-03-11 09:18 8.4K 
[ ]define_SAM_coverage_..>2022-03-11 09:18 1.3K 
[ ]define_coverage_part..>2022-03-11 09:18 1.5K 
[ ]eXpress_trans_to_gen..>2022-03-11 09:18 4.7K 
[ ]ensure_coord_sorted_..>2022-03-11 09:18 2.2K 
[ ]extract_reads_per_pa..>2022-03-11 09:18 7.6K 
[ ]fastQ_to_fastA.pl 2022-03-11 09:18 3.0K 
[ ]fastQ_to_tab.pl 2022-03-11 09:18 2.4K 
[ ]fasta_find_duplicate..>2022-03-11 09:18 905  
[ ]fasta_to_tab.pl 2022-03-11 09:18 712  
[ ]filter_iworm_by_min_..>2022-03-11 09:18 756  
[ ]filter_transcripts_r..>2022-03-11 09:18 2.8K 
[ ]fragment_coverage_wr..>2022-03-11 09:18 2.1K 
[ ]get_Trinity_gene_to_..>2022-03-11 09:18 523  
[ ]inchworm_transcript_..>2022-03-11 09:18 4.4K 
[ ]iworm_LR_to_scaff_pa..>2022-03-11 09:18 8.4K 
[ ]jaccard_fasta_clippe..>2022-03-11 09:18 1.9K 
[ ]jaccard_wig_clipper.pl 2022-03-11 09:18 7.1K 
[ ]join_partitions_with..>2022-03-11 09:18 704  
[ ]kallisto_trans_to_ge..>2022-03-11 09:18 4.5K 
[ ]merge_pair_and_LR_sc..>2022-03-11 09:18 1.0K 
[ ]nbkc_merge_left_righ..>2022-03-11 09:18 4.2K 
[ ]nbkc_normalize.pl 2022-03-11 09:18 2.7K 
[ ]ordered_fragment_coo..>2022-03-11 09:18 18K 
[ ]outfmt6_add_percent_..>2022-03-11 09:18 1.8K 
[ ]partition_chrysalis_..>2022-03-11 09:18 6.2K 
[ ]partitioned_trinity_..>2022-03-11 09:18 3.8K 
[ ]plugin_install_tests.sh2022-03-11 09:18 416  
[ ]prep_rnaseq_alignmen..>2022-03-11 09:18 5.6K 
[ ]print_butterfly_asse..>2022-03-11 09:18 1.4K 
[ ]process_GMAP_alignme..>2022-03-11 09:18 1.6K 
[ ]revcomp_fasta.pl 2022-03-11 09:18 571  
[ ]run_TMM_scale_matrix.pl2022-03-11 09:18 5.2K 
[ ]run_UpperQuartileNor..>2022-03-11 09:18 2.5K 
[ ]salmon_runner.pl 2022-03-11 09:18 1.1K 
[ ]salmon_trans_to_gene..>2022-03-11 09:18 4.9K 
[ ]scaffold_iworm_conti..>2022-03-11 09:18 8.0K 
[ ]segment_GFF_partitio..>2022-03-11 09:18 2.9K 
[DIR]tests/ 2022-03-11 09:18 -  
[ ]trinity_install_test..>2022-03-11 09:18 1.2K 
[ ]trinity_installer.py 2022-03-11 09:18 843  
[ ]wig_clip_to_bed.pl 2022-03-11 09:18 1.3K 
[ ]write_partitioned_tr..>2022-03-11 09:18 1.6K