Name | Last modified | Size | Description | |
---|---|---|---|---|
Parent Directory | - | |||
c1#clip.sam | 2013-07-22 06:08 | 337 | ||
c1#pad1.sam | 2013-07-22 06:08 | 388 | ||
c1.fa | 2013-07-22 06:08 | 15 | ||
c1.fa.fai | 2013-07-22 06:08 | 14 | ||
ce#unmap.sam | 2013-07-22 06:08 | 1.3K | ||
ce.fa | 2013-07-22 06:08 | 1.0M | ||
ce.fa.fai | 2013-07-22 06:08 | 230 | ||
xx#large_aux.sam | 2013-07-22 06:08 | 884K | ||
xx#large_aux2.sam | 2013-07-22 06:08 | 651 | ||
xx#minimal.sam | 2013-07-22 06:08 | 254 | ||
xx#pair.sam | 2013-07-22 06:08 | 304 | ||
xx#rg.sam | 2013-07-22 06:08 | 517 | ||
xx#triplet.sam | 2013-07-22 06:08 | 267 | ||
xx#unsorted.sam | 2013-07-22 06:08 | 320 | ||
test-vcf-sweep.out | 2013-09-05 04:41 | 92 | ||
c1#bounds.sam | 2013-09-20 03:58 | 148 | ||
auxf.fa | 2014-12-20 08:53 | 29 | ||
auxf.fa.fai | 2014-12-20 08:53 | 18 | ||
c1#pad2.sam | 2015-02-18 04:27 | 527 | ||
c1#pad3.sam | 2015-02-18 04:27 | 665 | ||
ce#1.sam | 2015-02-18 04:27 | 341 | ||
ce#2.sam | 2015-02-18 04:27 | 645 | ||
ce#5.sam | 2015-02-18 04:27 | 1.8K | ||
ce#5b.sam | 2015-02-18 04:27 | 1.8K | ||
ce#large_seq.sam | 2015-02-18 04:27 | 2.0M | ||
ce#tag_depadded.sam | 2015-02-18 04:27 | 1.6K | ||
ce#tag_padded.sam | 2015-02-18 04:27 | 1.6K | ||
ce#unmap1.sam | 2015-02-18 04:27 | 2.7K | ||
ce#unmap2.sam | 2015-02-18 04:27 | 5.4K | ||
c1#unknown.sam | 2015-03-10 10:05 | 429 | ||
c1#noseq.sam | 2015-04-08 10:41 | 433 | ||
ce#supp.sam | 2015-04-08 11:32 | 547 | ||
c2#pad.sam | 2015-04-29 08:55 | 847 | ||
xx#tlen.sam | 2015-04-29 08:55 | 1.0K | ||
xx#tlen2.sam | 2015-04-29 08:55 | 1.1K | ||
c2.fa | 2015-04-29 09:19 | 14 | ||
c2.fa.fai | 2015-04-29 09:24 | 12 | ||
xx#repeated.sam | 2016-01-14 06:15 | 298 | ||
ce#5b_java.cram | 2016-03-18 09:17 | 6.6K | ||
xx#large_aux_java.cram | 2016-03-18 09:17 | 22K | ||
test-vcf-hdr-in.vcf | 2016-03-24 06:32 | 2.0K | ||
test-vcf-hdr.out | 2016-03-24 06:32 | 1.3K | ||
noroundtrip-out.vcf | 2016-03-30 07:05 | 325 | ||
noroundtrip.vcf | 2016-03-30 07:05 | 271 | ||
md#1.sam | 2016-05-20 08:59 | 1.0K | ||
md.fa | 2016-05-20 08:59 | 45 | ||
md.fa.fai | 2016-05-20 08:59 | 13 | ||
auxf#values.sam | 2016-06-17 05:40 | 751 | ||
bgziptest.txt | 2016-09-01 08:22 | 15 | ||
bgziptest.txt.gz | 2016-09-01 08:22 | 181 | ||
bgziptest.txt.gz.gzi | 2016-09-01 08:22 | 88 | ||
formatmissing-out.vcf | 2016-09-09 04:11 | 226 | ||
formatmissing.vcf | 2016-09-09 04:11 | 226 | ||
auxf#values_java.cram | 2016-10-20 08:38 | 5.0K | ||
thread_pool.md | 2017-03-03 13:48 | 2.9K | ||
test-bcf-translate.out | 2017-08-29 04:56 | 869 | ||
range.bam | 2018-01-31 06:22 | 13K | ||
range.bam.bai | 2018-01-31 06:22 | 360 | ||
range.cram | 2018-01-31 06:22 | 11K | ||
range.cram.crai | 2018-01-31 06:22 | 94 | ||
range.out | 2018-01-31 06:22 | 3.4K | ||
realn01.fa | 2018-02-09 04:23 | 719 | ||
realn01.fa.fai | 2018-02-09 04:23 | 21 | ||
realn01.sam | 2018-02-09 04:23 | 1.8K | ||
realn01_exp-a.sam | 2018-02-09 04:23 | 2.1K | ||
realn01_exp-e.sam | 2018-02-09 04:23 | 2.1K | ||
realn01_exp.sam | 2018-02-09 04:23 | 2.1K | ||
realn02-r.sam | 2018-02-09 04:23 | 3.7K | ||
realn02.fa | 2018-02-09 04:23 | 4.2K | ||
realn02.fa.fai | 2018-02-09 04:23 | 17 | ||
realn02.sam | 2018-02-09 04:23 | 2.8K | ||
realn02_exp-a.sam | 2018-02-09 04:23 | 3.7K | ||
realn02_exp-e.sam | 2018-02-09 04:23 | 3.7K | ||
realn02_exp.sam | 2018-02-09 04:23 | 3.7K | ||
ce#1000.sam | 2018-03-09 05:50 | 315K | ||
fastqs.fq | 2018-05-21 09:09 | 47K | ||
fastqs_README.txt | 2018-05-21 09:09 | 4.8K | ||
colons.bam | 2018-06-07 05:50 | 268 | ||
colons.bam.bai | 2018-06-07 05:50 | 424 | ||
faidx.fa | 2018-06-18 09:11 | 289 | ||
index.bcf.csi | 2018-06-20 08:11 | 144 | ||
index.vcf | 2018-06-20 08:11 | 67K | ||
xx#MD.sam | 2018-11-07 05:03 | 1.0K | ||
xx#MD2.sam | 2018-11-07 05:03 | 1.1K | ||
xx.fa | 2018-11-07 05:03 | 86 | ||
xx.fa.fai | 2018-11-07 05:03 | 44 | ||
index.bam.bai | 2019-01-30 08:48 | 776 | ||
index.bam.csi | 2019-01-30 08:48 | 130 | ||
index.cram.crai | 2019-01-30 08:48 | 83 | ||
index.sam | 2019-01-30 08:48 | 53K | ||
index.sam.gz.bai | 2019-01-30 08:48 | 776 | ||
index.sam.gz.csi | 2019-01-30 08:48 | 130 | ||
test-vcf-api.out | 2019-04-10 06:40 | 2.0K | ||
tabix.out | 2019-04-18 10:36 | 98 | ||
no_hdr_sq_1.bam | 2019-07-04 10:43 | 1.7K | ||
no_hdr_sq_1.bam.csi | 2019-07-04 10:43 | 94 | ||
no_hdr_sq_1.expected..> | 2019-07-04 10:43 | 2.0K | ||
emptyfile | 2019-08-28 09:58 | 0 | ||
xx#blank.sam | 2019-08-28 09:58 | 71 | ||
cross_validate.sh | 2019-11-19 05:20 | 4.2K | ||
fieldarith.c | 2020-01-07 09:32 | 2.4K | ||
hfile.c | 2020-01-07 09:32 | 12K | ||
hts_endian.c | 2020-01-07 09:32 | 17K | ||
pileup.c | 2020-01-07 09:32 | 6.8K | ||
test-parse-reg.c | 2020-01-07 09:32 | 6.9K | ||
thrash_threads1.c | 2020-01-07 09:32 | 1.6K | ||
thrash_threads2.c | 2020-01-07 09:32 | 1.6K | ||
thrash_threads3.c | 2020-01-07 09:32 | 1.7K | ||
thrash_threads4.c | 2020-01-07 09:32 | 2.2K | ||
thrash_threads5.c | 2020-01-07 09:32 | 2.1K | ||
thrash_threads6.c | 2020-01-07 09:32 | 3.3K | ||
thrash_threads7.c | 2020-01-07 09:32 | 3.6K | ||
with-shlib.sh | 2020-05-16 03:01 | 2.1K | ||
fieldarith.sam | 2020-05-18 09:27 | 910 | ||
test_bgzf.c | 2020-05-20 18:18 | 31K | ||
test-bcf-sr.c | 2020-07-17 06:01 | 5.0K | ||
test-bcf-sr.pl | 2020-07-17 06:01 | 19K | ||
test-regidx.c | 2020-07-17 06:01 | 16K | ||
test_kfunc.c | 2020-08-17 11:18 | 3.6K | ||
simple_test_driver.sh | 2020-08-19 03:34 | 5.5K | ||
compare_sam.pl | 2020-09-16 04:17 | 6.3K | ||
test-bcf-translate.c | 2020-09-16 04:17 | 8.8K | ||
test_realn.c | 2020-09-25 11:16 | 4.9K | ||
test_str2int.c | 2020-09-25 11:16 | 8.7K | ||
test_kstring.c | 2020-09-29 13:50 | 12K | ||
index_dos.sam | 2020-10-07 07:00 | 53K | ||
test_view.c | 2020-10-19 09:07 | 14K | ||
test_index.c | 2020-10-23 09:06 | 2.8K | ||
plugins-dlhts.c | 2020-11-05 05:26 | 5.0K | ||
header_syms.pl | 2021-01-07 03:37 | 3.5K | ||
test-vcf-sweep.c | 2021-01-29 12:34 | 3.8K | ||
formatcols.vcf | 2021-02-16 10:49 | 241 | ||
vcf_meta_meta.vcf | 2021-04-09 11:58 | 427 | ||
test-vcf-api.c | 2021-06-22 05:24 | 23K | ||
test_introspection.c | 2021-06-22 05:24 | 3.2K | ||
pileup_mod.c | 2021-08-10 13:55 | 6.9K | ||
index2.sam | 2021-11-03 09:46 | 477 | ||
index.vcf.gz.csi | 2022-01-20 10:28 | 168 | ||
index.vcf.gz.tbi | 2022-01-20 10:28 | 206 | ||
test-logging.pl | 2022-04-27 05:39 | 2.5K | ||
test-bcf_set_variant..> | 2022-07-05 11:09 | 3.9K | ||
test_expr.c | 2022-07-14 04:33 | 12K | ||
sam.c | 2022-07-27 05:31 | 79K | ||
test.pl | 2022-07-27 05:31 | 40K | ||
test_mod.c | 2022-07-27 05:31 | 6.9K | ||
test_time_funcs.c | 2022-08-16 12:05 | 4.5K | ||
base_mods/ | 2022-08-18 05:55 | - | ||
bcf-sr/ | 2022-08-18 05:55 | - | ||
fastq/ | 2022-08-18 05:55 | - | ||
longrefs/ | 2022-08-18 05:55 | - | ||
maintainer/ | 2022-08-18 05:55 | - | ||
mpileup/ | 2022-08-18 05:55 | - | ||
sam_filter/ | 2022-08-18 05:55 | - | ||
tabix/ | 2022-08-18 05:55 | - | ||
fieldarith | 2023-02-05 12:49 | 4.0M | ||
fieldarith.o | 2023-02-05 12:49 | 19K | ||
hfile | 2023-02-05 12:49 | 4.0M | ||
hfile.o | 2023-02-05 12:49 | 96K | ||
hts_endian | 2023-02-05 12:49 | 36K | ||
hts_endian.o | 2023-02-05 12:49 | 64K | ||
pileup | 2023-02-05 12:49 | 4.0M | ||
pileup.o | 2023-02-05 12:49 | 36K | ||
pileup_mod | 2023-02-05 12:49 | 4.0M | ||
pileup_mod.o | 2023-02-05 12:49 | 50K | ||
plugins-dlhts | 2023-02-05 12:49 | 9.5K | ||
plugins-dlhts.o | 2023-02-05 12:49 | 6.2K | ||
sam | 2023-02-05 12:49 | 4.1M | ||
sam.o | 2023-02-05 12:49 | 368K | ||
test_bgzf | 2023-02-05 12:49 | 4.0M | ||
test_bgzf.o | 2023-02-05 12:49 | 132K | ||
test_expr | 2023-02-05 12:49 | 4.0M | ||
test_expr.o | 2023-02-05 12:49 | 47K | ||
test_kfunc | 2023-02-05 12:49 | 37K | ||
test_kfunc.o | 2023-02-05 12:49 | 25K | ||
test-regidx | 2023-02-05 12:49 | 4.1M | ||
test-regidx.o | 2023-02-05 12:49 | 78K | ||
test_kstring | 2023-02-05 12:49 | 69K | ||
test_kstring.o | 2023-02-05 12:49 | 76K | ||
test_mod | 2023-02-05 12:49 | 4.0M | ||
test_mod.o | 2023-02-05 12:49 | 31K | ||
test_realn | 2023-02-05 12:49 | 4.0M | ||
test_realn.o | 2023-02-05 12:49 | 33K | ||
test_index | 2023-02-05 12:49 | 4.5M | ||
test_index.o | 2023-02-05 12:49 | 18K | ||
test_str2int | 2023-02-05 12:49 | 4.0M | ||
test_str2int.o | 2023-02-05 12:49 | 65K | ||
test_time_funcs | 2023-02-05 12:49 | 29K | ||
test_time_funcs.o | 2023-02-05 12:49 | 49K | ||
test_view | 2023-02-05 12:49 | 4.6M | ||
test_view.o | 2023-02-05 12:49 | 106K | ||
fuzz/ | 2023-02-05 12:49 | - | ||
test-bcf-sr | 2023-02-05 12:49 | 4.7M | ||
test-bcf-sr.o | 2023-02-05 12:49 | 57K | ||
test-bcf-translate | 2023-02-05 12:49 | 4.5M | ||
test-bcf-translate.o | 2023-02-05 12:49 | 30K | ||
test-vcf-api | 2023-02-05 12:49 | 4.6M | ||
test-vcf-api.o | 2023-02-05 12:49 | 125K | ||
test-vcf-sweep | 2023-02-05 12:49 | 4.5M | ||
test-vcf-sweep.o | 2023-02-05 12:49 | 18K | ||
test-parse-reg | 2023-02-05 12:49 | 4.0M | ||
test-parse-reg.o | 2023-02-05 12:49 | 34K | ||
test_introspection | 2023-02-05 12:49 | 4.0M | ||
test_introspection.o | 2023-02-05 12:49 | 13K | ||
test-bcf_set_variant..> | 2023-02-05 12:49 | 4.5M | ||
test-bcf_set_variant..> | 2023-02-05 12:49 | 1.3M | ||