birch - hisat2


hisat2 - Align RNAseq reads to a hisat2-indexed genome
Launching the program
command
hisat2 [options]* -x <ht2-idx> {-1 <m1> -2 <m2> | -U <r> | --sra-acc <SRA accession number>} [-S <sam>]
blreads
Assemble --> hisat2
Documentation
Documentation
http://www.ccb.jhu.edu/software/hisat/manual.shtml
Manual
$doc/ccb/hisat2.man
Data
Sample input
Sample output
Package: CCB
Platforms: linux-x86_64, osx-x86_64