#NEXUS [written Sat Jun 07 11:23:24 PDT 2008 by Mesquite version 2.5 BETA 2 (build j76) at Thrandina.local/192.168.0.136 (Wayne Maddison)] BEGIN NOTES; TEXT FILE TEXT = 'Example files for coalescence calculations^n^nThe files linked to this one illustrate some of the coalescence calculations that can be done by the package of coalescence modules of the Mesquite system. To learn more about this package, use the Coalescence Package menu item of the Help menu, or touch on the banner in the Mesquite Startup window. (It should take you to your web browser, perhaps after asking you to locate the browser.)^n^nTo go from one file to another, hit the "Go" button in the green window.'; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; getWindow; tell It; setResourcesState false true 72; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 22; setFont SanSerif; setFontSize 10; endTell; newAssistant #mesquite.basic.ExamplesNavigator.ExamplesNavigator; tell It; setNextFileName '01-coalescence.nex'; getWindow; tell It; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 447; setLocation 8 22; setFont SanSerif; setFontSize 14; setActive; setExplanation 'Example files for coalescence calculations^n^nThe files linked to this one illustrate some of the coalescence calculations that can be done by the package of coalescence modules of the Mesquite system. To learn more about this package, go to the population genetics section of the manual using the button below, or use the Coalescence Package menu item of the Help menu, or touch on the banner in the Mesquite Startup window. (It should take you to your web browser, perhaps after asking you to locate the browser.)^n^nTo go from one file to another, hit the "Next" button.'; setTitle Coalescence_examples; toggleFileNames off; setPrevButtonName Previous; setNextButtonName Next; addWebLink Manual 'mesquite:docs/Gene Trees.html'; addFileLink Return_to_main_Introduction '../Introduction.nex'; endTell; showWindow; endTell; endTell; end;