You can save in fasta format queries sequences:
- From selected hits (multiple selections allowed) in the main grid
- All the queries that didn't give any hit against the database
- All the queries that are not keept after filtering
- First you need to import in JAMBLAST the queries fasta file
Menu 'File' -> 'Import Queries fasta file'
and select the queries fasta file
- In the "Filtered Blast results" grid select 1 or more queries and right clik. A popup menu will appear. Select the "Save Queries Sequences" menu and enter a file name