" << endl;
cout << "\t| " << endl;
cout << "\t\t";
cout << bed.chrom << ":" << bed.start+1 << "-" << bed.end;
cout << "" << endl;
cout << "\t | " << endl;
if (_bed->bedType == 4) {
cout << "\t" << endl;
cout << bed.name << endl;
cout << "\t | " << endl;
}
else if (_bed->bedType == 5) {
cout << "\t" << endl;
cout << bed.name << endl;
cout << "\t | " << endl;
cout << "\t" << endl;
cout << bed.score << endl;
cout << "\t | " << endl;
}
else if ((_bed->bedType == 6) || (_bed->bedType == 9) || (_bed->bedType == 12)) {
cout << "\t" << endl;
cout << bed.name << endl;
cout << "\t | " << endl;
cout << "\t" << endl;
cout << bed.score << endl;
cout << "\t | " << endl;
cout << "\t" << endl;
cout << bed.strand << endl;
cout << "\t | " << endl;
}
cout << "
" << endl;
}
void BedLinks::CreateLinks() {
// construct the html base.
string org = _org;
string db = _db;
string base = _base;
base.append("/cgi-bin/hgTracks?org=");
base.append(org);
base.append("&db=");
base.append(db);
base.append("&position=");
// create the HTML header
cout << "" << endl <<"\t" << endl;
cout << "