Start: Tue Mar 26 08:09:07 CDT 2019
[ INFO] 2019-03-26 08:09:11 : Loading assembly: /home/psgendb/temp/blreads/transcriptome/rnaspades/transcripts.fasta
[ INFO] 2019-03-26 08:09:15 : Analysing assembly: /home/psgendb/temp/blreads/transcriptome/rnaspades/transcripts.fasta
[ INFO] 2019-03-26 08:09:15 : Results will be saved in /home/psgendb/temp/blreads/transcriptome/rnaspades/transrate/transcripts
[ INFO] 2019-03-26 08:09:15 : Calculating contig metrics...
[ INFO] 2019-03-26 08:09:20 : Contig metrics:
[ INFO] 2019-03-26 08:09:20 : -----------------------------------
[ INFO] 2019-03-26 08:09:20 : n seqs                        16283
[ INFO] 2019-03-26 08:09:20 : smallest                        131
[ INFO] 2019-03-26 08:09:20 : largest                       13295
[ INFO] 2019-03-26 08:09:20 : n bases                    21489642
[ INFO] 2019-03-26 08:09:20 : mean len                    1289.05
[ INFO] 2019-03-26 08:09:20 : n under 200                    2869
[ INFO] 2019-03-26 08:09:20 : n over 1k                      7646
[ INFO] 2019-03-26 08:09:20 : n over 10k                       11
[ INFO] 2019-03-26 08:09:20 : n with orf                    10047
[ INFO] 2019-03-26 08:09:20 : mean orf percent              73.48
[ INFO] 2019-03-26 08:09:20 : n90                             814
[ INFO] 2019-03-26 08:09:20 : n70                            1607
[ INFO] 2019-03-26 08:09:20 : n50                            2357
[ INFO] 2019-03-26 08:09:20 : n30                            3480
[ INFO] 2019-03-26 08:09:20 : n10                            5636
[ INFO] 2019-03-26 08:09:20 : gc                             0.67
[ INFO] 2019-03-26 08:09:20 : bases n                        1970
[ INFO] 2019-03-26 08:09:20 : proportion n                    0.0
[ INFO] 2019-03-26 08:09:20 : Contig metrics done in 5 seconds
[ INFO] 2019-03-26 08:09:20 : Calculating read diagnostics...
[ INFO] 2019-03-26 08:28:46 : Read mapping metrics:
[ INFO] 2019-03-26 08:28:46 : -----------------------------------
[ INFO] 2019-03-26 08:28:46 : fragments                  16042945
[ INFO] 2019-03-26 08:28:46 : fragments mapped           14984404
[ INFO] 2019-03-26 08:28:46 : p fragments mapped             0.93
[ INFO] 2019-03-26 08:28:46 : good mappings              14268158
[ INFO] 2019-03-26 08:28:46 : p good mapping                 0.89
[ INFO] 2019-03-26 08:28:46 : bad mappings                 716246
[ INFO] 2019-03-26 08:28:46 : potential bridges              5126
[ INFO] 2019-03-26 08:28:46 : bases uncovered              973371
[ INFO] 2019-03-26 08:28:46 : p bases uncovered              0.05
[ INFO] 2019-03-26 08:28:46 : contigs uncovbase              5743
[ INFO] 2019-03-26 08:28:46 : p contigs uncovbase            0.35
[ INFO] 2019-03-26 08:28:46 : contigs uncovered              2106
[ INFO] 2019-03-26 08:28:46 : p contigs uncovered            0.13
[ INFO] 2019-03-26 08:28:46 : contigs lowcovered             7619
[ INFO] 2019-03-26 08:28:46 : p contigs lowcovered           0.47
[ INFO] 2019-03-26 08:28:46 : contigs segmented              2238
[ INFO] 2019-03-26 08:28:46 : p contigs segmented            0.14
[ INFO] 2019-03-26 08:28:46 : Read metrics done in 1166 seconds
[ INFO] 2019-03-26 08:28:46 : No reference provided, skipping comparative diagnostics
[ INFO] 2019-03-26 08:28:51 : TRANSRATE ASSEMBLY SCORE     0.3248
[ INFO] 2019-03-26 08:28:51 : -----------------------------------
[ INFO] 2019-03-26 08:28:51 : TRANSRATE OPTIMAL SCORE      0.5242
[ INFO] 2019-03-26 08:28:51 : TRANSRATE OPTIMAL CUTOFF     0.0416
[ INFO] 2019-03-26 08:28:51 : good contigs                  14313
[ INFO] 2019-03-26 08:28:51 : p good contigs                 0.88
[ INFO] 2019-03-26 08:28:51 : Writing contig metrics for each contig to /home/psgendb/temp/blreads/transcriptome/rnaspades/transrate/transcripts/contigs.csv
[ INFO] 2019-03-26 08:28:57 : Writing analysis results to assemblies.csv
Finish: Tue Mar 26 08:28:57 CDT 2019