test_KEGG Testing Bio.KEGG.Enzyme on enzyme.sample ENTRY EC 1.1.1.1 NAME Alcohol dehydrogenase Aldehyde reductase CLASS Oxidoreductases Acting on the CH-OH group of donors With NAD+ or NADP+ as acceptor SYSNAME Alcohol:NAD+ oxidoreductase REACTION Alcohol + NAD+ = Aldehyde or Ketone + NADH SUBSTRATE NAD+ Primary alcohol Secondary alcohol Cyclic secondary alcohol Hemiacetal PRODUCT Aldehyde Ketone NADH COFACTOR Zinc COMMENT A zinc protein. Acts on primary or secondary alcohols or hemiacetals; the animal, but not the yeast, enzyme acts also on cyclic secondary alcohols The insect enzyme is a member of the nonmetallo-short-chain alcohol dehydrogenase (ADH) family (Proc.Natl.Acad.Sci.USA(1991) 88, 10064-10068). PATHWAY PATH: MAP00010 Glycolysis / Gluconeogenesis PATH: MAP00071 Fatty acid metabolism PATH: MAP00120 Bile acid biosynthesis PATH: MAP00350 Tyrosine metabolism PATH: MAP00561 Glycerolipid metabolism GENES ECO: b0356 b1241 b1478 b3589 ECE: Z0456 Z2016 Z2232 Z5010 ECS: ECs0411 ECs1741 ECs2082 ECs4466 HIN: HI0185 XFA: XF1746 XF2389 VCH: VC1147 VC2033 PAE: PA2119 PA2158 PA2188 PA3629 PA5427 PMU: PM1453 NME: NMB0546 NMB1304 NMA: NMA0725 NMA1518 MLO: mlr0872 mlr1136 mlr1178 CCR: CC2516 CC3029 BSU: BS2776 BS3211 BHA: BH1829 LLA: L13145 L55758 SPY: SPy0044 MTU: Rv0761c Rv1862 Rv2259 MLE: ML1784 ML2053 SYN: sll0990 AAE: aq_1240 aq_1362 TMA: TM0111 TM0920 AFU: AF0024 AF0339 AF2019 AF2101 HAL: VNG1821G TAC: Ta0832 Ta0833 Ta0841 TVO: TVG0387048 TVG0995648 TVG1348694 PHO: PH0743 PAB: PAB1511 APE: APE1245 APE1557 APE1963 APE2239 SSO: SSO0472 SSO0764 SSO1220 SSO1300 SSO1646 SSO2334 SSO2441 SSO2494 SSO2501 SSO2536 SSO2717 SSO2800 SSO2878 SCE: YBR145W YDL168W YGL256W YMR083W YMR303C YOL086C SPO: ADH1 SPAC5H10.06C SPCC13B11.04C ATH: At1g77120 CEL: K12G11.3 K12G11.4 DME: CG3425 CG3481 CG6598 MMU: 1098256 87921 87926 87929 HSA: 124 125 126 127 128 130 131 DISEASE MIM: 103700 Alcohol dehydrogenase (class I), alpha polypeptide MIM: 103720 Alcohol dehydrogenase (class I), beta polypeptide MIM: 103730 Alcohol dehydrogenase (class I), gamma polypeptide MIM: 103740 Alcohol dehydrogenase (class II), pi polypeptide MIM: 600086 Alcohol dehydrogenase-7 STRUCTURES PDB: 1A4U 1A71 1A72 1ADB 1ADC 1ADF 1ADG 1AGN 1AXE 1AXG 1B14 1B15 1B16 1B2L 1BTO 1CDO 1D1S 1D1T 1DDA 1DEH 1E3E 1E3I 1E3L 1EE2 1HDX 1HDY 1HDZ 1HET 1HEU 1HF3 1HLD 1HSO 1HSZ 1HT0 1HTB 1LDE 1LDY 1QLH 1QLJ 1TEH 2OHX 2OXI 3BTO 3HUD 5ADH 6ADH 7ADH DBLINKS IUBMB Enzyme Nomenclature: 1.1.1.1 ExPASy - ENZYME nomenclature database: 1.1.1.1 WIT (What Is There) Metabolic Reconstruction: 1.1.1.1 BRENDA, the Enzyme Database: 1.1.1.1 SCOP (Structural Classification of Proteins): 1.1.1.1 /// ENTRY EC 1.1.1.62 NAME Estradiol 17beta-dehydrogenase CLASS Oxidoreductases Acting on the CH-OH group of donors With NAD+ or NADP+ as acceptor SYSNAME Estradiol-17beta:NAD(P)+ 17-oxidoreductase REACTION Estradiol-17beta + NAD+ or NADP+ = Estrone + NADH or NADPH SUBSTRATE Estradiol-17beta (S)-20-Hydroxypregn-4-en-3-one NAD+ NADP+ PRODUCT Estrone (S)-Pregn-4-en-3,20-dione NADH NADPH COMMENT Also acts on (S)-20-hydroxypregn-4-en-3-one and related compounds, oxidizing the (S)-20-group. B-specific with respect to NAD(P)+ (cf. EC 1.1.1.149). PATHWAY PATH: MAP00150 Androgen and estrogen metabolism GENES CEL: F11A5.12 DME: CG1444 CG3415 HSA: 3292 3293 3294 3295 3296 51478 DISEASE MIM: 109685 Hydroxysteroid (17-beta) dehydrogenase 2 MIM: 264300 Hydroxysteroid (17-beta) dehydrogenase 3 STRUCTURES PDB: 1FDT 1FDS 1FDV 1FDW 1IOL 3DHE 1EQU 1DHT 1BHS 1A27 1FDU DBLINKS IUBMB Enzyme Nomenclature: 1.1.1.62 ExPASy - ENZYME nomenclature database: 1.1.1.62 WIT (What Is There) Metabolic Reconstruction: 1.1.1.62 BRENDA, the Enzyme Database: 1.1.1.62 SCOP (Structural Classification of Proteins): 1.1.1.62 /// ENTRY EC 1.1.1.68 NAME Transferred to EC 1.7.99.5 CLASS Oxidoreductases Acting on the CH-OH group of donors With NAD+ or NADP+ as acceptor COMMENT Transferred entry. Now EC 1.7.99.5 - 5,10-Methylenetetrahydrofolate reductase (FADH2). DBLINKS IUBMB Enzyme Nomenclature: 1.1.1.68 ExPASy - ENZYME nomenclature database: 1.1.1.68 WIT (What Is There) Metabolic Reconstruction: 1.1.1.68 /// ENTRY EC 1.6.5.3 NAME NADH dehydrogenase (ubiquinone) Ubiquinone reductase Type I dehydrogenase Complex I dehydrogenase CLASS Oxidoreductases Acting on NADH or NADPH With quinone or related compound as acceptor SYSNAME NADH:ubiquinone oxidoreductase REACTION NADH + Ubiquinone = NAD+ + Ubiquinol SUBSTRATE NADH Ubiquinone PRODUCT NAD+ Ubiquinol COFACTOR FAD Iron Sulfur COMMENT A flavoprotein (FAD) containing iron-sulfur contres. The complex, present in mitochondria, can be degraded to form EC 1.6.99.3. PATHWAY PATH: MAP00130 Ubiquinone biosynthesis PATH: MAP00190 Oxidative phosphorylation GENES ECO: b2276 b2277 b2278 b2279 b2280 b2281 b2282 b2283 b2284 b2285 b2286 b2287 b2288 ECE: Z3534 Z3536 Z3537 Z3538 Z3539 Z3540 Z3541 Z3542 Z3543 Z3544 Z3545 Z3546 Z3547 ECS: ECs3160 ECs3161 ECs3162 ECs3163 ECs3164 ECs3165 ECs3166 ECs3167 ECs3168 ECs3169 ECs3170 ECs3171 ECs3172 XFA: XF0305 XF0306 XF0307 XF0308 XF0309 XF0310 XF0311 XF0312 XF0313 XF0314 XF0315 XF0316 XF0317 XF0318 VCH: VC1581 VCA0155 VCA0157 PAE: PA1054 PA1056 PA1883 PA2637 PA2638 PA2639 PA2640 PA2641 PA2642 PA2643 PA2644 PA2645 PA2646 PA2647 PA2648 PA2649 BUC: BU154 BU155 BU156 BU157 BU158 BU159 BU160 BU161 BU162 BU163 BU164 BU165 BU166 NME: NMB0241 NMB0242 NMB0243 NMB0244 NMB0245 NMB0246 NMB0249 NMB0250 NMB0251 NMB0253 NMB0254 NMB0257 NMB0258 NMB0259 NMA: NMA0002 NMA0005 NMA0006 NMA0008 NMA0009 NMA0010 NMA0014 NMA0015 NMA0016 NMA0017 NMA0018 NMA0019 NMA0747 NMA2228 NMA2229 HPY: HP1260 HP1261 HP1262 HP1263 HP1264 HP1265 HP1266 HP1267 HP1268 HP1269 HP1270 HP1271 HP1272 HP1273 HPJ: jhp1181 jhp1182 jhp1183 jhp1184 jhp1185 jhp1186 jhp1187 jhp1188 jhp1189 jhp1190 jhp1191 jhp1192 jhp1193 jhp1194 CJE: Cj1566c Cj1567c Cj1568c Cj1569c Cj1570c Cj1571c Cj1572c Cj1573c Cj1574c Cj1575c Cj1576c Cj1577c Cj1578c Cj1579c RPR: RP115 RP282 RP283 RP284 RP353 RP354 RP355 RP356 RP357 RP537 RP790 RP791 RP792 RP793 RP795 RP796 RP797 MLO: mll1352 mll1354 mll1355 mll1357 mll1358 mll1359 mll1361 mll1362 mll1364 mll1365 mll1366 mll1367 mll1369 mll1371 mll1372 mll5193 mll5397 mll5398 CCR: CC1937 CC1938 CC1939 CC1940 CC1941 CC1942 CC1945 CC1946 CC1947 CC1950 CC1952 CC1954 CC1955 CC1956 BSU: BS0231 MTU: Rv3145 Rv3146 Rv3147 Rv3148 Rv3149 Rv3150 Rv3151 Rv3152 Rv3153 Rv3154 Rv3155 Rv3156 Rv3157 Rv3158 SYN: sll0026 sll0027 sll0223 sll0519 sll0520 sll0521 sll0522 sll1220 sll1221 sll1223 sll1732 sll1733 slr0261 slr0331 slr0844 slr1279 slr1280 slr1281 slr1291 slr2007 slr2009 DRA: DR0880 DR1492 DR1493 DR1494 DR1495 DR1496 DR1497 DR1498 DR1499 DR1500 DR1501 DR1503 DR1504 DR1505 DR1506 AAE: aq_1310 aq_1312 aq_1314 aq_1315 aq_1317 aq_1318 aq_1319 aq_1320 aq_1321 aq_1322 aq_135 aq_1373 aq_1374 aq_1375 aq_1377 aq_1378 aq_1379 aq_1382 aq_1383 aq_1385 aq_437 aq_551 aq_573 aq_574 aq_866 TMA: TM0010 TM0011 TM0012 TM0201 TM0228 TM1105 TM1211 TM1212 TM1213 TM1214 TM1215 TM1216 TM1424 TM1425 TM1426 MJA: MJ0520 MJ1309 MJ1362 MTH: MTH1237 MTH1246 MTH1548 MTH1549 MTH393 AFU: AF1823 AF1824 AF1825 AF1826 AF1827 AF1828 AF1829 AF1830 AF1831 HAL: VNG0635G VNG0636G VNG0637G VNG0639G VNG0640G VNG0641C VNG0643G VNG0646G VNG0647G VNG0648G TAC: Ta0959 Ta0960 Ta0961 Ta0962 Ta0964 Ta0965 Ta0966 Ta0967 Ta0968 Ta0969 Ta0970 TVO: TVG1157047 TVG1158465 TVG1160017 TVG1161017 TVG1162018 TVG1162541 TVG1162786 TVG1163214 TVG1164251 TVG1165354 TVG1165809 TVG1166270 PHO: PH0941 PH0942 PH1431 PH1446 PH1447 PH1448 PH1449 PH1450 PH1451 PH1452 PH1453 PAB: PAB0488 PAB0490 PAB0492 PAB0493 PAB0494 PAB0495 PAB0496 PAB0805 PAB0806 PAB1888 PAB2416 APE: APE1410 APE1411 APE1415 APE1417 APE1418 APE1419 APE1421 APE1422 APE1426 APE1428 APE1430 SSO: SSO0322 SSO0323 SSO0324 SSO0325 SSO0326 SSO0327 SSO0328 SSO0329 SSO0665 SCE: YKL192C SPO: SPAC11E3.12 SPAC4H3.09 SPBC18E5.10 ATH: AT4g02580 AT5g08530 AT5g11770 AT5g37510 At1g16700 At1g65290 At1g79010 At1g79200 At2g02050 At2g20360 At2g44620 CEL: C09H10.3 C16A3.4 C18E9.4 C25A1.13 C33A12.1 D2030.4 F16B4.6 F22D6.4 F37C12.3 F44G4.2 F53F4.10 F59C6.5 K04G7.4 K09A9.5 T10E9.7 T20H4.5 T26A5.3 W10D5.2 Y51H1A.3a Y51H1A.3b Y57G11C.12 Y63D3A.7 DME: CG10320 CG11423 CG11913 CG12079 CG15328 CG15434 CG1970 CG2014 CG2286 CG3192 CG3621 CG3683 CG3944 CG5548 CG5703 CG6020 CG6343 CG6463 CG6485 CG6914 CG7712 CG8102 CG8844 CG9140 CG9160 CG9160_1 CG9172 CG9306 CG9762 HSA: 4535 4536 4537 4538 4539 4540 4541 4694 4695 4696 4697 4698 4700 4701 4702 4704 4705 4706 4707 4708 4709 4710 4711 4712 4713 4714 4715 4716 4717 4718 4719 4720 4722 4723 4724 4725 4726 4727 4728 4729 4731 DISEASE MIM: 300078 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1, 7.5kD MIM: 601677 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 (13kD, B13) DBLINKS IUBMB Enzyme Nomenclature: 1.6.5.3 ExPASy - ENZYME nomenclature database: 1.6.5.3 WIT (What Is There) Metabolic Reconstruction: 1.6.5.3 BRENDA, the Enzyme Database: 1.6.5.3 /// ENTRY EC 1.14.13.28 NAME 3,9-Dihydroxypterocarpan 6a-monooxygenase 3,9-Dihydroxypterocarpan 6a-hydroxylase CLASS Oxidoreductases Acting on paired donors with incorporation of molecular oxygen With NADH or NADPH as one donor, and incorporation of one atom of oxygen SYSNAME (6aR,11aR)-3,9-Dihydroxypterocarpan,NADPH:oxygen oxidoreductase $ (6a-hydroxylating) REACTION (6aR,11aR)-3,9-Dihydroxypterocarpan + NADPH + O2 = (6aS,11aS)-3,6a,9-Trihydroxypterocarpan + NADP+ + H2O SUBSTRATE (6aR,11aR)-3,9-Dihydroxypterocarpan NADPH O2 PRODUCT (6aS,11aS)-3,6a,9-Trihydroxypterocarpan NADP+ H2O COFACTOR Heme COMMENT Possibly a heme-thiolate protein (P-450). The product of the reaction is the biosynthetic precursor of the phytoalexin glyceollin in soybean. DBLINKS IUBMB Enzyme Nomenclature: 1.14.13.28 ExPASy - ENZYME nomenclature database: 1.14.13.28 WIT (What Is There) Metabolic Reconstruction: 1.14.13.28 BRENDA, the Enzyme Database: 1.14.13.28 /// ENTRY EC 2.4.1.68 NAME Glycoprotein 6-alpha-L-fucosyltransferase GDPfucose--glycoprotein fucosyltransferase CLASS Transferases Glycosyltransferases Hexosyltransferases SYSNAME GDP-L-fucose:glycoprotein (L-fucose to asparagine-linked $ N-acetylglucosamine of N-acetyl-beta-D-glucosaminyl-1,2-alpha- $D-mannosyl-1,3-(R1-alpha-1,6)-beta-D-mannosyl-1,4-beta-N-acetyl- $D-glucosaminyl-1,4-N-acetyl-D-glucosaminyl)asparagine 6-alpha-L- $fucosyltransferase REACTION GDP-L-fucose + N4-(N-Acetyl-beta-D-glucosaminyl-1,2-alpha-D- $mannosyl-1,3-(R1-alpha-1,6)-beta-D-mannosyl-beta-N-acetyl-1,4- $D-glucosaminyl-1,4-N-acetyl-D-glucosaminyl)asparagine = GDP + N4-(N-Acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3- $(R1-alpha-1,6)-beta-D-mannosyl-1,4-beta-N-acetyl-D-glucosaminyl- $1,4-(alpha-L-fucosyl-1,6)-N-acetyl-D-glucosaminyl)asparagine SUBSTRATE GDP-L-fucose N4-(N-Acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3- $(R1-alpha-1,6)-beta-D-mannosyl-beta-N-acetyl-1,4-D-glucosaminyl- $1,4-N-acetyl-D-glucosaminyl)asparagine PRODUCT GDP N4-(N-Acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3- $(R1-alpha-1,6)-beta-D-mannosyl-1,4-beta-N-acetyl-D-glucosaminyl- $1,4-(alpha-L-fucosyl-1,6)-N-acetyl-D-glucosaminyl)asparagine PATHWAY PATH: MAP00510 Glycoprotein biosynthesis DBLINKS IUBMB Enzyme Nomenclature: 2.4.1.68 ExPASy - ENZYME nomenclature database: 2.4.1.68 WIT (What Is There) Metabolic Reconstruction: 2.4.1.68 BRENDA, the Enzyme Database: 2.4.1.68 /// ENTRY EC 3.1.1.6 NAME Acetylesterase C-esterase (in animal tissues) CLASS Hydrolases Acting on ester bonds Carboxylic ester hydrolases SYSNAME Acetic-ester acetylhydrolase REACTION an Acetic ester + H2O = an Alcohol + Acetate SUBSTRATE Acetic ester H2O PRODUCT Alcohol Acetate GENES MMU: 95428 STRUCTURES PDB: 1BS9 1G66 2AXE DBLINKS IUBMB Enzyme Nomenclature: 3.1.1.6 ExPASy - ENZYME nomenclature database: 3.1.1.6 WIT (What Is There) Metabolic Reconstruction: 3.1.1.6 UM-BBD (Biocatalysis/Biodegradation Database): 3.1.1.6 BRENDA, the Enzyme Database: 3.1.1.6 SCOP (Structural Classification of Proteins): 3.1.1.6 /// ENTRY EC 2.7.2.1 NAME Acetate kinase Acetokinase CLASS Transferases Transferring phosphorus-containing groups Phosphotransferases with a carboxyl group as acceptor SYSNAME ATP:acetate phosphotransferase REACTION ATP + Acetate = ADP + Acetyl phosphate SUBSTRATE ATP Acetate Propanoate PRODUCT ADP Acetyl phosphate Propanoyl phosphate COMMENT Propanoate also acts as acceptor, but more slowly. PATHWAY PATH: MAP00620 Pyruvate metabolism PATH: MAP00640 Propanoate metabolism GENES ECO: ECOLI_2245 HIN: HI1204 BSU: ackA MGE: MG357 MPN: G12_orf390 SYN: sll1299 DBLINKS University of Geneva ENZYME DATA BANK: 2.7.2.1 WIT (What Is There) Metabolic Reconstruction: 2.7.2.1 PIR: B49338 B49935 E64239 KIECAA /// Testing Bio.KEGG.Enzyme on enzyme.irregular ENTRY EC 1.14.18.1 NAME Monophenol monooxygenase Tyrosinase Phenolase Monophenol oxidase Cresolase CLASS Oxidoreductases Acting on paired donors with incorporation of molecular oxygen With another compound as one donor, and incorporation of one atom of oxygen SYSNAME Monophenol,L-dopa:oxygen oxidoreductase REACTION L-Tyrosine + L-Dopa + O2 = L-Dopa + Dopaquinone + H2O SUBSTRATE L-Tyrosine L-Dopa Benzenediol O2 PRODUCT L-Dopa Dopaquinone H2O COFACTOR Copper COMMENT A group of copper proteins that also catalyse the reaction of EC 1.10.3.1, if only benzenediols are available as substrate. (EC 1.10.3.1 Catechol oxidase) PATHWAY PATH: MAP00350 Tyrosine metabolism PATH: MAP00740 Riboflavin metabolism PATH: MAP00940 Flavonoids, stilbene and lignin biosynthesis PATH: MAP00950 Alkaloid biosynthesis I GENES DME: CG5779 MMU: 94856 98880 HSA: 7299 DISEASE MIM: 203100 Tyrosinase DBLINKS IUBMB Enzyme Nomenclature: 1.14.18.1 ExPASy - ENZYME nomenclature database: 1.14.18.1 WIT (What Is There) Metabolic Reconstruction: 1.14.18.1 BRENDA, the Enzyme Database: 1.14.18.1 /// ENTRY EC 3.4.21.50 NAME Lysyl endopeptidase Achromobacter proteinase I Endoproteinase Lys-C Ps-1 CLASS Hydrolases Acting on peptide bonds (peptidases) Serine endopeptidases REACTION Preferential cleavage: Lys+, including -Lys-|-Pro- SUBSTRATE Protein Peptide H2O PRODUCT Protein Peptide COMMENT A chymotrypsin homologue isolated from Achromobacter lyticus. Enzymes with similar specificity are produced by Lysobacter enzymogenes (Endoproteinase Lys-C) and Pseudomonas aeruginosa (Ps-1). Also hydrolyses lysine amides and esters. GENES MJA: MJ1468 MTH: MTH995 STRUCTURES PDB: 1ARC 1ARB DBLINKS IUBMB Enzyme Nomenclature: 3.4.21.50 ExPASy - ENZYME nomenclature database: 3.4.21.50 WIT (What Is There) Metabolic Reconstruction: 3.4.21.50 BRENDA, the Enzyme Database: 3.4.21.50 SCOP (Structural Classification of Proteins): 3.4.21.50 /// Testing Bio.KEGG.Enzyme on enzyme.new ENTRY EC 6.2.1.25 NAME benzoate---CoA ligase benzoate---coenzyme A ligase benzoyl-coenzyme A synthetase benzoyl CoA synthetase (AMP forming) CLASS Ligases; Forming carbon-sulfur bonds; Acid-thiol ligases SYSNAME benzoate:CoA ligase (AMP-forming) REACTION ATP + benzoate + CoA = AMP + diphosphate + benzoyl-CoA [RN:R01422] SUBSTRATE ATP [CPD:C00002] benzoate [CPD:C00180] CoA [CPD:C00010] PRODUCT AMP [CPD:C00020] diphosphate [CPD:C00013] benzoyl-CoA [CPD:C00512] COMMENT Also acts on 2-, 3- and 4-fluorobenzoate, but only very slowly on the corresponding chlorobenzoates. PATHWAY PATH: ec00362 Benzoate degradation PATH: ec00627 Aminobenzoate degradation PATH: ec01100 Metabolic pathways PATH: ec01120 Microbial metabolism in diverse environments GENES REU: Reut_A1327 REH: H16_A1412 H16_B1918 RME: Rmet_1224 CTI: RALTA_A1325 RALTA_B1617 CNC: CNE_1c14400 CNE_2c18780 BXE: Bxe_A1419 Bxe_C0896 BPH: Bphy_1543 BPY: Bphyt_2700 BGL: bglu_2g11460 BUG: BC1001_2395 BGE: BC1002_1980 BGF: BC1003_1063 BRH: RBRH_00494 BPT: Bpet3574 AXY: AXYL_05035 AKA: TKWG_07570 RFR: Rfer_0216 POL: Bpro_1624 Bpro_2983 PNA: Pnap_2948 VEI: Veis_0730 DAC: Daci_0076 DEL: DelCs14_0077 VAP: Vapar_0089 VPE: Varpa_0102 CTT: CtCNB1_0097 RTA: Rta_22340 LCH: Lcho_3655 EBA: ebA2757 ebA5301 AZO: azo3052 TMZ: Tmz1t_3136 GME: Gmet_2143 GLO: Glov_2397 GEO: Geob_0200 GEM: GM21_2825 DMA: DMR_19390 DAS: Daes_3238 DPR: Despr_3172 DTI: Desti_5323 BJA: blr1077 BRA: BRADO6791 BBT: BBta_0747 BBta_6637 RPA: RPA0661 RPA0669 RPB: RPB_4656 RPC: RPC_1016 RPC_1025 RPD: RPD_1526 RPD_1534 RPE: RPE_0592 RPE_0604 RPT: Rpal_0728 Rpal_0736 RPX: Rpdx1_4117 Rpdx1_4125 RVA: Rvan_0044 SIL: SPO3697 JAN: Jann_0669 SWI: Swit_0829 RPM: RSPPHO_01133 MAG: amb2869 GYC: GYMC61_2828 GYA: GYMC52_1957 GCT: GC56T3_1519 SCB: SCAB_8391 SCT: SCAT_5491 SCY: SCATT_54890 BSD: BLASA_2555 AMD: AMED_8609 AMN: RAM_35745 RAM_44185 AMM: AMES_6861 AMES_8478 PDX: Psed_1491 DBLINKS ExplorEnz - The Enzyme Database: 6.2.1.25 IUBMB Enzyme Nomenclature: 6.2.1.25 ExPASy - ENZYME nomenclature database: 6.2.1.25 UM-BBD (Biocatalysis/Biodegradation Database): 6.2.1.25 BRENDA, the Enzyme Database: 6.2.1.25 CAS: 95329-17-2 /// ENTRY EC 6.2.1.25 NAME benzoate---CoA ligase benzoate---coenzyme A ligase benzoyl-coenzyme A synthetase benzoyl CoA synthetase (AMP forming) CLASS Ligases; Forming carbon-sulfur bonds; Acid-thiol ligases SYSNAME benzoate:CoA ligase (AMP-forming) REACTION ATP + benzoate + CoA = AMP + diphosphate + benzoyl-CoA [RN:R01422] SUBSTRATE ATP [CPD:C00002] benzoate [CPD:C00180] CoA [CPD:C00010] PRODUCT AMP [CPD:C00020] diphosphate [CPD:C00013] benzoyl-CoA [CPD:C00512] COMMENT Also acts on 2-, 3- and 4-fluorobenzoate, but only very slowly on the corresponding chlorobenzoates. PATHWAY PATH: ec00362 Benzoate degradation PATH: ec00627 Aminobenzoate degradation PATH: ec01100 Metabolic pathways PATH: ec01120 Microbial metabolism in diverse environments GENES REU: Reut_A1327 REH: H16_A1412 H16_B1918 RME: Rmet_1224 CTI: RALTA_A1325 RALTA_B1617 CNC: CNE_1c14400 CNE_2c18780 BXE: Bxe_A1419 Bxe_C0896 BPH: Bphy_1543 BPY: Bphyt_2700 BGL: bglu_2g11460 BUG: BC1001_2395 BGE: BC1002_1980 BGF: BC1003_1063 BRH: RBRH_00494 BPT: Bpet3574 AXY: AXYL_05035 AKA: TKWG_07570 RFR: Rfer_0216 POL: Bpro_1624 Bpro_2983 PNA: Pnap_2948 VEI: Veis_0730 DAC: Daci_0076 DEL: DelCs14_0077 VAP: Vapar_0089 VPE: Varpa_0102 CTT: CtCNB1_0097 RTA: Rta_22340 LCH: Lcho_3655 EBA: ebA2757 ebA5301 AZO: azo3052 TMZ: Tmz1t_3136 GME: Gmet_2143 GLO: Glov_2397 GEO: Geob_0200 GEM: GM21_2825 DMA: DMR_19390 DAS: Daes_3238 DPR: Despr_3172 DTI: Desti_5323 BJA: blr1077 BRA: BRADO6791 BBT: BBta_0747 BBta_6637 RPA: RPA0661 RPA0669 RPB: RPB_4656 RPC: RPC_1016 RPC_1025 RPD: RPD_1526 RPD_1534 RPE: RPE_0592 RPE_0604 RPT: Rpal_0728 Rpal_0736 RPX: Rpdx1_4117 Rpdx1_4125 RVA: Rvan_0044 SIL: SPO3697 JAN: Jann_0669 SWI: Swit_0829 RPM: RSPPHO_01133 MAG: amb2869 GYC: GYMC61_2828 GYA: GYMC52_1957 GCT: GC56T3_1519 SCB: SCAB_8391 SCT: SCAT_5491 SCY: SCATT_54890 BSD: BLASA_2555 AMD: AMED_8609 AMN: RAM_35745 RAM_44185 AMM: AMES_6861 AMES_8478 PDX: Psed_1491 DBLINKS ExplorEnz - The Enzyme Database: 6.2.1.25 IUBMB Enzyme Nomenclature: 6.2.1.25 ExPASy - ENZYME nomenclature database: 6.2.1.25 UM-BBD (Biocatalysis/Biodegradation Database): 6.2.1.25 BRENDA, the Enzyme Database: 6.2.1.25 CAS: 95329-17-2 /// Testing Bio.KEGG.Compound on compound.sample ENTRY C00023 NAME Iron Fe2+ Fe(II) Fe3+ Fe(III) FORMULA Fe PATHWAY PATH: MAP00860 Porphyrin and chlorophyll metabolism ENZYME 1.1.3.22 (C) 1.1.3.26 (C) 1.2.1.43 (C) 1.2.3.10 (C) 1.2.99.2 (C) 1.3.1.31 (C) 1.3.1.53 (C) 1.3.5.1 (C) 1.3.99.1 (C) 1.3.99.11 (C) 1.4.1.13 (C) 1.4.7.1 (C) 1.5.1.13 (C) 1.5.3.11 (C) 1.5.5.1 (C) 1.6.5.3 (C) 1.6.6.4 (C) 1.6.99.3 (C) 1.6.99.13 (R) 1.6.99.13 (R) 1.7.7.1 (C) 1.7.7.2 (C) 1.7.99.4 (C) 1.8.1.2 (C) 1.8.7.1 (C) 1.8.99.1 (C) 1.8.99.2 (C) 1.8.99.3 (C) 1.9.99.1 (R) 1.9.99.1 (R) 1.9.99.1 (C) 1.12.1.2 (C) 1.12.2.1 (C) 1.12.99.1 (C) 1.13.11.1 (C) 1.13.11.2 (C) 1.13.11.3 (C) 1.13.11.4 (C) 1.13.11.5 (C) 1.13.11.6 (C) 1.13.11.8 (C) 1.13.11.9 (C) 1.13.11.10 (C) 1.13.11.12 (C) 1.13.11.13 (C) 1.13.11.15 (C) 1.13.11.16 (C) 1.13.11.18 (C) 1.13.11.19 (C) 1.13.11.20 (C) 1.13.11.21 (C) 1.13.11.25 (C) 1.13.11.32 (C) 1.13.11.36 (C) 1.13.11.37 (C) 1.13.11.38 (C) 1.13.11.43 (C) 1.13.99.1 (C) 1.14.11.1 (C) 1.14.11.2 (C) 1.14.11.3 (C) 1.14.11.4 (C) 1.14.11.6 (C) 1.14.11.7 (C) 1.14.11.8 (C) 1.14.11.9 (C) 1.14.11.10 (C) 1.14.11.11 (C) 1.14.11.12 (C) 1.14.11.14 (C) 1.14.11.15 (C) 1.14.11.16 (C) 1.14.11.17 (C) 1.14.12.1 (C) 1.14.12.3 (C) 1.14.12.7 (C) 1.14.12.8 (C) 1.14.12.9 (C) 1.14.12.10 (C) 1.14.12.12 (C) 1.14.12.13 (C) 1.14.13.12 (C) 1.14.13.25 (C) 1.14.13.61 (C) 1.14.15.2 (C) 1.14.16.1 (C) 1.14.16.2 (C) 1.14.16.3 (C) 1.14.16.4 (C) 1.14.16.6 (C) 1.14.99.3 (R) 1.14.99.5 (C) 1.14.99.18 (C) 1.14.99.25 (C) 1.15.1.1 (C) 1.16.3.1 (R) 1.16.3.1 (R) 1.17.4.1 (C) 1.17.4.2 (C) 1.18.1.1 (C) 1.18.99.1 (C) 3.5.1.56 (C) 3.5.4.8 (C) 3.6.3.30 (R) 4.2.1.3 (C) 4.2.1.32 (C) 4.2.1.35 (C) 4.2.1.81 (C) 4.2.1.84 (C) 4.2.1.85 (C) 4.99.1.1 (R) DBLINKS CAS: 7439-89-6 PROMISE: FEFEMAIN RNRR2 FERROXIDASE FERRITIN RUBRERYTHRIN HAEMERYTHRIN PAP HAEMMAIN CATALASE CYTOCHROMES COX CYTB BACFERRITIN CYTBHBL CYTB5 SULFOXIDASE CYTB562 CYTC CYTCI CYTCII CYTCIII CYTCIV CYTC1 CYTC554 CYTCD1 CYTF HAO CYTBC1 GLOBINS PEROXIDASES ANPEROXIDASE FPBPEROXIDASE HAEM_THIOLATE HAEMCPO NOS P450 NITROPHORIN SIROHAEM FESMAIN FECYS4 DESULFOREDOXIN DFX RUBREDOXIN 2FE2S ADRENODOXIN PLANTFRDX FEHASE XANTOXIDASE RIESKE ARHD 4FE4S ACONITASE AOR BACFRDX DMSOR ENDONUCLEASE3 GPATASE HIPIP NITROGENASE1 NITROGENASE2 NIFE PRISMANE TMADH FEMAIN AAAOH EARCD FESOD IARCD IPNS LIPOXYGENASE NHASE PRCPB /// ENTRY C00017 NAME Protein PATHWAY PATH: MAP00251 Glutamate metabolism PATH: MAP00252 Alanine and aspartate metabolism PATH: MAP00290 Valine, leucine and isoleucine biosynthesis PATH: MAP00330 Arginine and proline metabolism PATH: MAP00450 Selenoamino acid metabolism ENZYME 2.3.2.6 (R) 2.3.2.8 (R) 2.4.1.94 (R) 2.4.1.109 (R) 2.4.1.112 (R) 2.4.1.113 (R) 2.4.2.33 (R) 2.7.1.37 (R) 2.7.1.123 (R) 3.1.2.22 (R) 3.1.3.16 (R) 3.4.11.10 (R) 3.4.11.10 (R) 3.4.19.3 (R) 3.4.19.3 (R) 3.4.21.10 (R) 3.4.21.10 (R) 3.4.21.20 (R) 3.4.21.32 (R) 3.4.21.32 (R) 3.4.21.36 (R) 3.4.21.36 (R) 3.4.21.37 (R) 3.4.21.37 (R) 3.4.21.50 (R) 3.4.21.50 (R) 3.4.21.53 (R) 3.4.21.53 (R) 3.4.21.59 (R) 3.4.21.59 (R) 3.4.21.61 (R) 3.4.21.62 (R) 3.4.21.62 (R) 3.4.21.64 (R) 3.4.21.64 (R) 3.4.21.66 (R) 3.4.21.66 (R) 3.4.22.1 (R) 3.4.22.1 (R) 3.4.22.2 (R) 3.4.22.2 (R) 3.4.22.3 (R) 3.4.22.3 (R) 3.4.22.6 (R) 3.4.22.6 (R) 3.4.22.7 (R) 3.4.22.7 (R) 3.4.22.8 (R) 3.4.22.8 (R) 3.4.22.10 (R) 3.4.22.10 (R) 3.4.22.14 (R) 3.4.22.14 (R) 3.4.22.15 (R) 3.4.22.15 (R) 3.4.22.16 (R) 3.4.22.16 (R) 3.4.22.17 (R) 3.4.22.17 (R) 3.4.22.25 (R) 3.4.22.25 (R) 3.4.22.27 (R) 3.4.22.27 (R) 3.4.22.28 (R) 3.4.22.29 (R) 3.4.22.30 (R) 3.4.22.30 (R) 3.4.22.31 (R) 3.4.22.31 (R) 3.4.22.32 (R) 3.4.22.32 (R) 3.4.22.33 (R) 3.4.22.33 (R) 3.4.22.34 (R) 3.4.22.34 (R) 3.4.22.35 (R) 3.4.22.35 (R) 3.4.23.1 (R) 3.4.23.1 (R) 3.4.23.3 (R) 3.4.23.3 (R) 3.4.23.4 (R) 3.4.23.4 (R) 3.4.23.5 (R) 3.4.23.5 (R) 3.4.23.12 (R) 3.4.23.12 (R) 3.4.23.16 (R) 3.4.23.16 (R) 3.4.23.17 (R) 3.4.23.17 (R) 3.4.23.18 (R) 3.4.23.18 (R) 3.4.23.19 (R) 3.4.23.19 (R) 3.4.23.20 (R) 3.4.23.20 (R) 3.4.23.21 (R) 3.4.23.21 (R) 3.4.23.22 (R) 3.4.23.22 (R) 3.4.23.23 (R) 3.4.23.23 (R) 3.4.23.24 (R) 3.4.23.24 (R) 3.4.23.25 (R) 3.4.23.25 (R) 3.4.23.26 (R) 3.4.23.26 (R) 3.4.23.27 (R) 3.4.23.27 (R) 3.4.23.28 (R) 3.4.23.28 (R) 3.4.23.29 (R) 3.4.23.29 (R) 3.4.23.30 (R) 3.4.23.30 (R) 3.4.23.31 (R) 3.4.23.31 (R) 3.4.23.32 (R) 3.4.23.32 (R) 3.4.23.33 (R) 3.4.23.33 (R) 3.4.23.34 (R) 3.4.23.34 (R) 3.4.24.1 (R) 3.4.24.1 (R) 3.4.24.3 (R) 3.4.24.6 (R) 3.4.24.6 (R) 3.4.24.7 (R) 3.4.24.11 (R) 3.4.24.11 (R) 3.4.24.12 (R) 3.4.24.12 (R) 3.4.24.15 (R) 3.4.24.15 (R) 3.4.24.17 (R) 3.4.24.17 (R) 3.4.24.18 (R) 3.4.24.18 (R) 3.4.24.20 (R) 3.4.24.20 (R) 3.4.24.21 (R) 3.4.24.21 (R) 3.4.24.22 (R) 3.4.24.22 (R) 3.4.24.23 (R) 3.4.24.24 (R) 3.4.24.25 (R) 3.4.24.25 (R) 3.4.24.26 (R) 3.4.24.27 (R) 3.4.24.27 (R) 3.4.24.28 (R) 3.4.24.28 (R) 3.4.24.29 (R) 3.4.24.29 (R) 3.4.24.30 (R) 3.4.24.30 (R) 3.4.24.31 (R) 3.4.24.31 (R) 3.4.24.32 (R) 3.4.24.32 (R) 3.4.24.33 (R) 3.4.24.33 (R) 3.4.24.34 (R) 3.4.24.36 (R) 3.4.24.36 (R) 3.4.24.37 (R) 3.4.24.37 (R) 3.4.24.38 (R) 3.4.24.38 (R) 3.4.24.39 (R) 3.4.24.39 (R) 3.4.24.40 (R) 3.4.24.40 (R) 3.4.24.41 (R) 3.4.24.41 (R) 3.4.24.42 (R) 3.4.24.42 (R) 3.4.24.43 (R) 3.4.24.43 (R) 3.4.24.44 (R) 3.4.24.44 (R) 3.4.24.45 (R) 3.4.24.45 (R) 3.4.24.46 (R) 3.4.24.46 (R) 3.4.24.47 (R) 3.4.24.47 (R) 3.4.24.48 (R) 3.4.24.48 (R) 3.4.24.49 (R) 3.4.24.49 (R) 3.4.24.50 (R) 3.4.24.50 (R) 3.4.24.51 (R) 3.4.24.51 (R) 3.4.24.52 (R) 3.4.24.52 (R) 3.4.24.53 (R) 3.4.24.53 (R) 3.4.24.54 (R) 3.4.24.54 (R) 3.4.99.43 (R) 3.4.99.43 (R) 3.4.99.46 (R) 3.4.99.46 (R) 6.2.1.19 (R) /// ENTRY C00099 NAME beta-Alanine 3-aminopropionic acid 3-Aminopropanoate FORMULA C3H7NO2 PATHWAY PATH: MAP00240 Pyrimidine metabolism PATH: MAP00252 Alanine and aspartate metabolism PATH: MAP00410 beta-Alanine metabolism PATH: MAP00640 Propanoate metabolism PATH: MAP00770 Pantothenate and CoA biosynthesis ENZYME 1.5.1.26 (R) 2.6.1.18 (R) 2.6.1.19 (R) 2.6.1.55 (R) 3.4.13.3 (R) 3.4.13.5 (R) 3.4.13.20 (R) 3.5.1.6 (R) 3.5.1.21 (R) 3.5.1.22 (R) 3.5.3.17 (R) 4.1.1.11 (R) 4.1.1.15 (R) 6.3.2.1 (R) 6.3.2.11 (R) 6.3.2.23 (R) DBLINKS CAS: 107-95-9 /// ENTRY C00294 NAME Inosine FORMULA C10H12N4O5 PATHWAY PATH: MAP00230 Purine metabolism ENZYME 1.1.3.28 (R) 2.7.1.73 (R) 3.2.2.2 (R) 3.5.4.4 (R) 3.5.4.17 (R) DBLINKS CAS: 58-63-9 /// ENTRY C00298 NAME Trypsin ENZYME 3.4.21.9 (R) 3.4.23.18 (R) 3.4.23.20 (R) 3.4.23.24 (R) 3.4.23.26 (R) /// ENTRY C00348 NAME Undecaprenyl phosphate PATHWAY PATH: MAP00550 Peptideglycan biosynthesis ENZYME 2.4.1.54 (R) 2.7.1.66 (R) 2.7.8.6 (R) 2.7.8.13 (R) 3.6.1.27 (R) /// ENTRY C00349 NAME 2-Methyl-3-oxopropanoate 3-Oxo-2-methylpropanoate Methylmalonate semialdehyde FORMULA C4H6O3 ENZYME 1.1.1.31 (R) 1.2.1.27 (R) 2.6.1.22 (R) 2.6.1.40 (R) 2.6.1.61 (R) /// ENTRY C01386 NAME NH2Mec ENZYME 3.4.22.32 (R) /// Testing Bio.KEGG.Compound on compound.irregular ENTRY C01454 NAME Toluate p-Toluate p-Toluic acid 4-Methylbenzoic acid Toluenecarboxylic acid Crithminic acid FORMULA C8H8O2 MASS 136.0524 PATHWAY PATH: map00622 Toluene and xylene degradation ENZYME 1.2.1.7 1.14.12.- DBLINKS CAS: 99-94-5 PubChem: 4631 ChEBI: 36635 3DMET: B00292 /// ENTRY C06876 NAME Nitrosobenzene FORMULA C6H5NO MASS 107.0371 PATHWAY PATH: map00626 Naphthalene and anthracene degradation ENZYME 1.6.6.- DBLINKS CAS: 586-96-9 PubChem: 9093 3DMET: B01057 /// Testing Bio.KEGG.Map on map00950.rea (R)-N-Methylcoclaurine + (S)-Coclaurine + NADPH + O2 <=> 2'-Norberbamunine + 2 H2O + NADP (R)-N-Methylcoclaurine + (S)-N-Methylcoclaurine + NADPH + O2 <=> Berbamunine + 2 H2O + NADP (R)-Norreticuline + S-Adenosyl-L-methionine <=> (R)-Reticuline + S-Adenosyl-L-homocysteine (R)-Reticuline + NADPH + O2 <=> 2 H2O + NADP+ + Salutaridine (S)-3'-Hydroxycoclaurine + S-Adenosyl-L-methionine <=> (S)-Norreticuline + S-Adenosyl-L-homocysteine (S)-6-O-Methylnorlaudanosoline + S-Adenosyl-L-methionine <=> (S)-Nororientaline + S-Adenosyl-L-homocysteine (S)-Canadine + 2 O2 <=> Berberine + 2 H2O2 (S)-Cheilanthifoline + NADPH + O2 <=> (S)-Stylopine + 2 H2O + NADP+ (S)-Coclaurine + S-Adenosyl-L-methionine <=> (S)-N-Methylcoclaurine + S-Adenosyl-L-homocysteine (S)-N-Methylcoclaurine <=> (S)-3'-Hydroxy-N-methylcoclaurine (S)-Norcoclaurine + S-Adenosyl-L-methionine <=> (S)-Coclaurine + S-Adenosyl-L-homocysteine (S)-Norlaudanosoline + S-Adenosyl-L-methionine <=> (S)-6-O-Methylnorlaudanosoline + S-Adenosyl-L-homocysteine (S)-Norreticuline + S-Adenosyl-L-methionine <=> (S)-Reticuline + S-Adenosyl-L-homocysteine (S)-Reticuline + O2 <=> (S)-Scoulerine + H2O2 (S)-Scoulerine + NADPH + O2 <=> (S)-Cheilanthifoline + 2 H2O + NADP+ (S)-Scoulerine + S-Adenosyl-L-methionine <=> (S)-Tetrahydrocolumbamine + S-Adenosyl-L-homocysteine (S)-Stylopine + S-Adenosyl-L-methionine <=> (S)-cis-N-methylstylopine (S)-Tetrahydrocolumbamine + 2 O2 <=> Columbamine + 2 H2O2 (S)-Tetrahydrocolumbamine + NADPH + O2 <=> (S)-Canadine + 2 H2O + NADP+ (S)-Tetrahydrocolumbamine + S-Adenosyl-L-methionine <=> S-Adenosyl-L-homocysteine + Tetrahydropalmatine (S)-cis-N-methylstylopine <=> Protopine 1,2-Dehydroreticuline + NADPH <=> (R)-Reticuline + NADP+ 10-Hydroxydihydrosanguinarine + S-Adenosyl-L-methionine <=> Dihydrochelirubine + S-Adenosyl-L-homocysteine 12-Hydroxydihydrochelirubine + S-Adenosyl-L-methionine <=> Dihydromacarpine + S-Adenosyl-L-homocysteine 2 (R)-N-Methylcoclaurine + NADPH + O2 <=> Guattegaumerine + 2 H2O + NADP 2 Columbamine + O2 <=> 2 Berberine + 2 H2O 2-Oxoglutarate + L-Tyrosine <=> 3-(4-Hydroxyphenyl)pyruvate + L-Glutamate 2-Oxoglutarate + L-Tyrosine <=> 4-Hydroxyphenylpyruvate + L-Glutamate 2-Oxoglutarate + L-Tyrosine <=> 4-Hydroxyphenylpyruvate + L-Glutamate 3'-Hydroxy-N-methyl-(S)-coclaurine + S-Adenosyl-L-methionine <=> (S)-Reticuline + S-Adenosyl-L-homocysteine 3,4-Dihydroxyphenylacetaldehyde + Dopamine <=> (S)-Norlaudanosoline + H2O 4-Hydroxyphenylacetaldehyde + Dopamine <=> (S)-Norcoclaurine + H2O 4-Hydroxyphenylpyruvate <=> 4-Hydroxyphenylacetaldehyde + CO2 6-Hydroxyprotopine <=> Dihydrosanguinarine 7-O-Acetylsalutaridinol <=> Thebaine Acetyl-CoA + Salutaridinol <=> 7-O-Acetylsalutaridinol + CoA Codeinone + NADPH <=> Codeine + NADP+ Columbamine + S-Adenosyl-L-methionine <=> Palmatine + S-Adenosyl-L-homocysteine Dihydrochelirubine + O2 <=> Chelirubine + H2O2 Dihydrochelirubine <=> 12-Hydroxychelirubine Dihydromacarpine + O2 <=> H2O2 + Macarpine Dihydrosanguinarine + NADPH + O2 <=> 10-Hydroxydihydrosanguinarine + H2O + NADP+ Dihydrosanguinarine + O2 <=> H2O2 + Sanguinarine H2O + L-Tyrosine + O2 <=> 4-Hydroxyphenylpyruvate + H2O2 + NH3 L-Tyrosine <=> CO2 + Tyramine L-Tyrosine <=> CO2 + Tyramine Morphine + NAD+ <=> Morphinone + NADH Morphine + NADP+ <=> Morphinone + NADPH Morphinone <=> Codeine NADPH + O2 + Protopine <=> 6-Hydroxyprotopine + H2O + NADP+ NADPH + Salutaridine <=> NADP+ + Salutaridinol Neopinone <=> Codeinone Oripavine <=> Morphinone Thebaine <=> Neopinone Thebaine <=> Oripavine Tyramine <=> Dopamine