BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: subject.fasta 1 sequences; 1,853 total letters Query= TR11080zzzc0_g2_i2_0 Length=1691 Score E Sequences producing significant alignments: (Bits) Value gi|308468219|ref|XP_003096353.1| CRE-AMA-1 protein [Caenorhabdi... 1901 0.0 > gi|308468219|ref|XP_003096353.1| CRE-AMA-1 protein [Caenorhabditis remanei] Length=1853 Score = 1901 bits (4924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 975/1817 (54%), Positives = 1275/1817 (70%), Gaps = 149/1817 (8%) Query 11 VKEVSYLQFGVLSPDEMKEMSVCKIEFPQTYENGVPKEGGLSDPRLGTMDRTQLCRTCNS 70 ++ V +QFG+L P+E+K MSV +EFP+ YENG PK GGL DPR G +DR C TC Sbjct 12 LRTVCRVQFGILGPEEIKRMSVAHVEFPEIYENGKPKLGGLMDPRQGVIDRRGRCMTCAG 71 Query 71 DARECPGHFGHIVLAKPMYHVGFLPFVLKILRCVCFFCSKLLVDSNDPRLKSILAQ--NH 128 + +CPGHF H+ LAKP++H+GFL LKILRCVCF+C +LL+D ++PR+ IL + + Sbjct 72 NLTDCPGHFAHLELAKPVFHIGFLTKSLKILRCVCFYCGRLLIDKSNPRVIDILKKTSGN 131 Query 129 HRRRIQSMMNLCRTKKICE-AGDDADDLAEHETEP-EKQRKPHGGCGNFQPNITKDGLRL 186 ++R+ + +LC++K +CE A + + L + +P ++K GCG +QP+ + G+ + Sbjct 132 AKKRLALIYDLCKSKSVCEGAAEKEEGLPDDVDDPMSGEKKIPAGCGRYQPSYRRVGIDI 191 Query 187 LAEFK-HVSDESIEKKQVLSAEKVYEILKKITDEDCRMMGLDPKFARPDWMVLTIFPVPP 245 AE+K +V++++ E+K +L+AE+V E+ K+ITDED ++G+DP+FARP+WM+ T+ PVPP Sbjct 192 NAEWKKNVNEDTQERKIMLTAERVLEVFKQITDEDILVIGMDPQFARPEWMICTVLPVPP 251 Query 246 PPVRPSILMDSSSRGEDDLTCKLADIIKSNHALRQQELSGSPAHIITEFTQILQYHVATY 305 VRP+++ S++ +DDLT KL+DIIK+N L++ E +G+ AH++T+ ++LQYHVAT Sbjct 252 LAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQYHVATL 311 Query 306 LDNELPGLPPAIQRSGRPLKSIRQRLRGKNGRVRGNLMGKRVDFSARTVITPDANIGIDE 365 +DN +PGLP A Q+ GRPLKSI+QRL+GK GR+RGNLMGKRVDFSARTVIT D N+ ID Sbjct 312 VDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDT 371 Query 366 VGVPRSIALNLTFPDIVTPLNIDRMYEYVRNGPREYPGAKYIVRDDGSRLDLRYIRKPSD 425 VGVPR+IA NLTFP+IVTP N+D++ E V G +YPGAKYI+R++G+R+DLRY + +D Sbjct 372 VGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYIIRENGARVDLRYHPRAAD 431 Query 426 LHLDYGYKVERHLRDGDFVLFNRQPSLHKMSIMAHRVKLLPFSTFRLNLSVTSPYNADFD 485 LHL GY+VERH++DGD ++FNRQP+LHKMS+M HRVK+LP+STFR+NLSVTSPYNADFD Sbjct 432 LHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFD 491 Query 486 GDEMNLHVPQSLEAIAEAQELMLVPRQIISPQANKPVIGLVQDVLIGARNMTKRDTFIEL 545 GDEMNLH+PQSLE AE +E+ +VPRQ+I+PQANKPV+G+VQD L R MTKRD FI+ Sbjct 492 GDEMNLHLPQSLETRAEIEEICMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDW 551 Query 546 DTVMNILMCTENFDGRIPMPAILKPKKLWTGKQLFSLILP-NVNLIRFTSTHPDGE---- 600 +M++LM +DG++P PAILKPK LWTGKQLFSLI+P NVN++R STHPD E Sbjct 552 SFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQLFSLIIPGNVNVLRTHSTHPDSEDSGP 611 Query 601 YTHISPGDTKVLIENGDLISGILCKRTLGTSGGSLIHIICNEHGHDTARLFLNQAQKVVN 660 Y ISPGDTKVLIE+G+L+SGI+C +T+G S G+L+H++ E G++ A F + Q V+N Sbjct 612 YKWISPGDTKVLIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVIN 671 Query 661 NWLVNIGFSIGIGDTIADEATMEQINKTIASAKNQVKELVLQAQQNILECQPGRTLHESF 720 WL+ +G +IGIGDTIAD AT I TI AK V +++ +A + LE PG TL ++F Sbjct 672 AWLLRVGHTIGIGDTIADHATYLDIQNTIKKAKQDVVDIIEKAHNDDLEPTPGNTLRQTF 731 Query 721 ENKVNKVLNTARDTAGTSAQNSLKESNNVKSMVTAGSKGSFINISQMIACVGQQNVEGKR 780 ENKVN++LN ARD G+SAQ SL E NN KSMV +GSKGS INISQ+IACVGQQNVEGKR Sbjct 732 ENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKR 791 Query 781 IPYGFGHRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 840 IP+GF HRTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ET Sbjct 792 IPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 851 Query 841 GYIQRRLVKAMEDLMVRYDGTVRNSLGCIIQFSYGEDGMDGAFVESQKLEILRLGDKAFQ 900 GYIQRRL+KAME +MV YDGTVRNSL ++Q YGEDG+DG +VE Q + ++ + F+ Sbjct 852 GYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVEDQNMPTMKPNNAVFE 911 Query 901 TLYFMDPTKANFGEDFLDQEVVEDVRNSSEAYELLSAEYEELKRCRRVLRQEVIPSGDDT 960 + MD T F ++VV +++ S + L+ +E+ +L+ RR+LR+ + P GD Sbjct 912 RDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRK-IFPRGDAK 970 Query 961 WPLPVNLRRLIWNAQVIFRLDTRKSTDLSPVKIIKGVKTLLSRLIVVKGDDEVSLEAQES 1020 LP NL+RLIWNAQ IF++D RK +LSP+ +I GV+ L +LI+V G+DE+S +AQ + Sbjct 971 IVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVINGVRELSKKLIIVSGNDEISKQAQYN 1030 Query 1021 CTMLFGILLKSTLASKRVLKEFRLNTVAFDWVLGEIESRFMQAIVQPSEAVGAIAAQSIG 1080 T+L ILL+STL +K++ +LNT AFDW+LGE+ESRF QAI QP E VGA+AAQS+G Sbjct 1031 ATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEVESRFQQAIAQPGEMVGALAAQSLG 1090 Query 1081 EPATQMTLNTFHYAGVSSKNVTLGVPRLKELINVAKKVKTPSLTVYLLPHCAKDSERAKS 1140 EPATQMTLNTFHYAGVS+KNVTLGVPRLKE+INV+K++KTPSLTV+L AKD+E+AK Sbjct 1091 EPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAAAKDAEKAKD 1150 Query 1141 VQCQLEHATLNTVTASTEIFYDPDPTTTVIEEDREFVQAYFEMPDEDISLEKISPWLLRI 1200 V C+LEH TL VT +T I+YDPDP TVI ED E+V ++EMPD D+S + SPWLLRI Sbjct 1151 VLCKLEHTTLKKVTLNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLS--RTSPWLLRI 1208 Query 1201 VLNREMMTDKKLSMADIAEKINIEFGCDTLCIFNDDNAEKLVLHVRIMNDQD--PKHEET 1258 L+R+ M DKKL+M IA++I+ FG D I+ DDNAEKLV +RI + EE Sbjct 1209 ELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGADTQEEQ 1268 Query 1259 ISEEATTTFLKQLEANMLSEMTLKGIDQIRKVYMRE-----ARKTFFDVDGRIATENEWI 1313 + + FL+ +EANMLS++TL+GI I KVYM + ++ +G +WI Sbjct 1269 VDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKAVADWI 1328 Query 1314 LETDGCNLLQVMSCPEVDFSRTTSNDIVEIIQVLGIEAARAALLKEIRDVISFDGSYVNY 1373 LETDG LL+V++ ++D RTTSNDI EI +VLGIEA R A+ +E+ +VISFDGSYVNY Sbjct 1329 LETDGTALLRVLAERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNY 1388 Query 1374 RHLAILVDFMTYRGYLMSITRHGINRNVTGPLMRCSFEETVEILMESAAFAEADHLRGVT 1433 RHLA+L D MT +G+LM+ITRHGINR G LMRCSFEETV+ILME++ AE D ++GV+ Sbjct 1389 RHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEASVHAEVDPVKGVS 1448 Query 1434 ENIILGQLGKFGTGSFDVFLNEKMLREAVDIPLPDGLEGQELFG--------DTSPTHQM 1485 ENI+LGQL + GTG FD+ L+ + + ++IP + G + SP+H Sbjct 1449 ENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGAGYYGGFAGSPNAHEFSPSH-- 1506 Query 1486 TPFETMGTP--GGA--------------FSPSTPNDGAMFSPFN--GYSNEATFSPSG-- 1525 +P+ + TP GGA FSP+ DG SPFN G+S + P G Sbjct 1507 SPWNSGVTPSYGGASWSPGAGGMSPSAGFSPAGNMDGGA-SPFNEGGWSPASPGDPLGAL 1565 Query 1526 SPSSP----FSP--YTPASPGYSPSSPAYSPSSPAYSPTSP------------------- 1560 SP +P SP Y+P SP +S +SP YSP+SP+YSPTSP Sbjct 1566 SPRTPAYGGMSPGAYSPTSPQFSMTSPHYSPTSPSYSPTSPAAGQSPASPSYSPTSPSYS 1625 Query ------------------------------------------------------------ Sbjct 1626 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSP 1685 Query 1561 AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS----------PTSPAYSPTSPAYSPTSPA 1610 YSPTSP YSPTSP YSPTSP YSPTSP+Y P+SP YSPTSP+YSPTSP Sbjct 1686 TYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQ 1745 Query 1611 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYTPTSPAYTPTSPAYTPT 1670 YSPTSP YSP+SP Y+P+SP Y+PTSP SP YSPTSP Y+PTSP+YTP+SP Y+PT Sbjct 1746 YSPTSPQYSPSSPTYTPSSPTYNPTSP--RAFSPQYSPTSPTYSPTSPSYTPSSPQYSPT 1803 Query 1671 SPAYTPTSPAYTPTSPA 1687 SP YTP SP+ P + A Sbjct 1804 SPTYTP-SPSDQPGTSA 1819 Score = 166 bits (419), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 88/133 (66%), Positives = 101/133 (76%), Gaps = 13/133 (10%) Query 1568 AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS----------PTSPAYSPTSPAYSPTSPA 1617 YSPTSP YSPTSP YSPTSP YSPTSP+Y P+SP YSPTSP+YSPTSP Sbjct 1686 TYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQ 1745 Query 1618 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYTPTSPAYTPTSPAYTPTSPAYTPT 1677 YSPTSP YSP+SP Y+P+SP Y+PTSP SP Y+PTSP Y+PTSP+YTP+SP Y+PT Sbjct 1746 YSPTSPQYSPSSPTYTPSSPTYNPTSP--RAFSPQYSPTSPTYSPTSPSYTPSSPQYSPT 1803 Query 1678 SPAYTPTSPAYTP 1690 SP YTP SP+ P Sbjct 1804 SPTYTP-SPSDQP 1815 Score = 140 bits (352), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 73/110 (66%), Positives = 83/110 (75%), Gaps = 15/110 (14%) Query 1597 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYS----------PTSPAYSPTSPAYSPTSPAY 1646 YSPTSP YSPTSP YSPTSP YSPTSP+Y P+SP YSPTSP+YSPTSP Y Sbjct 1687 YSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQY 1746 Query 1647 SPTSPAYTPTSPAYTPTSPAYTPT-----SPAYTPTSPAYTPTSPAYTPT 1691 SPTSP Y+P+SP YTP+SP Y PT SP Y+PTSP Y+PTSP+YTP+ Sbjct 1747 SPTSPQYSPSSPTYTPSSPTYNPTSPRAFSPQYSPTSPTYSPTSPSYTPS 1796 Lambda K H a alpha 0.317 0.134 0.394 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 2948400 Database: subject.fasta Posted date: Jun 3, 2015 4:53 PM Number of letters in database: 1,853 Number of sequences in database: 1 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40