Pubmed-entry ::= { pmid 19304878, medent { em std { year 2009, month 5, day 15 }, cit { title { name "Biopython: freely available Python tools for computational molecular biology and bioinformatics." }, authors { names ml { "Cock PJ", "Antao T", "Chang JT", "Chapman BA", "Cox CJ", "Dalke A", "Friedberg I", "Hamelryck T", "Kauff F", "Wilczynski B", "de Hoon MJ" }, affil str "Plant Pathology, SCRI, Invergowrie, Dundee, UK. peter.cock@scri.ac.uk" }, from journal { title { iso-jta "Bioinformatics", ml-jta "Bioinformatics", issn "1367-4811", name "Bioinformatics (Oxford, England)" }, imp { date std { year 2009, month 6, day 1 }, volume "25", issue "11", pages "1422-1423", language "eng", pubstatus ppublish, history { { pubstatus aheadofprint, date std { year 2009, month 3, day 20 } }, { pubstatus other, date std { year 2009, month 3, day 24, hour 9, minute 0 } }, { pubstatus pubmed, date std { year 2009, month 3, day 24, hour 9, minute 0 } }, { pubstatus medline, date std { year 2009, month 7, day 10, hour 9, minute 0 } } } } }, ids { pii "btp163", doi "10.1093/bioinformatics/btp163", pubmed 19304878, other { db "pmc", tag str "PMC2682512" } } }, abstract "SUMMARY: The Biopython project is a mature open source international collaboration of volunteer developers, providing Python libraries for a wide range of bioinformatics problems. Biopython includes modules for reading and writing different sequence file formats and multiple sequence alignments, dealing with 3D macro molecular structures, interacting with common tools such as BLAST, ClustalW and EMBOSS, accessing key online databases, as well as providing numerical methods for statistical learning. AVAILABILITY: Biopython is freely available, with documentation and source code at (www.biopython.org) under the Biopython license.", mesh { { term "Computational Biology", qual { { mp TRUE, subh "methods" } } }, { term "Databases, Factual" }, { term "Internet" }, { term "Programming Languages" }, { mp TRUE, term "Software" } }, pmid 19304878, pub-type { "Journal Article", "Research Support, Non-U.S. Gov't" }, status medline } }