# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /home/yuxing/proteome/bacilus/data/P37569/P37569.fa # target HMM database: /home/yuxing/data/pdb70_16Apr15/pdb70.hmm # output directed to file: /home/yuxing/proteome/bacilus/data/P37569/P37569_hmmer_pdb70 # per-dom hits tabular output: /home/yuxing/proteome/bacilus/data/P37569/P37569_hmmer_pdb70.domtbl # prefer accessions over names: yes # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: sp|P37569|MCSA_BACSU [L=185] Description: Protein-arginine kinase activator protein OS=Bacillus subtilis (strain 168) GN=mcsA PE=1 SV=1 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-06 29.3 0.3 1.8e-06 28.6 0.3 1.2 1 1e52_A 0.0059 17.0 4.1 0.0081 16.6 4.1 1.2 1 1ofw_A 0.0062 17.0 4.4 0.007 16.8 4.4 1.2 1 4n4j_A ------ inclusion threshold ------ 0.012 16.9 11.4 0.039 15.2 0.4 3.3 2 2adr_A 0.02 15.8 5.1 0.38 11.6 0.9 2.3 2 3rsn_A 0.023 15.7 1.9 0.12 13.4 0.2 2.3 2 3cc2_Z 0.025 15.2 3.3 0.11 13.1 0.7 3.0 2 1vq8_Z 0.036 14.7 3.9 4.4 8.1 1.7 3.6 2 3j21_g 0.04 15.1 3.8 0.04 15.1 3.8 1.9 2 1gyo_A 0.041 15.5 9.6 1.7 10.5 0.0 4.0 2 1klr_A 0.048 15.0 1.9 5.6 8.3 0.1 2.4 2 3o9x_A 0.06 12.9 5.2 0.067 12.8 5.2 1.2 1 1z1n_X 0.061 14.8 13.0 6.1 8.3 5.7 3.3 2 2d9h_A 0.063 14.6 13.9 1.3 10.4 5.4 3.4 2 2lvh_A 0.071 14.7 6.8 8.2 8.1 0.1 3.7 3 2en6_A 0.072 14.4 4.6 0.16 13.3 4.6 1.5 1 2lbm_A 0.11 13.5 1.0 0.42 11.7 0.1 2.2 2 4w20_p 0.11 14.0 12.1 2.7 9.6 0.1 4.0 2 2eq0_A 0.12 13.5 0.5 0.59 11.2 0.1 2.1 2 3zf7_o 0.12 13.6 8.9 0.43 11.9 1.2 2.5 2 1x4u_A 0.12 13.8 9.3 8 8.0 9.3 3.0 1 2dmd_A 0.13 13.5 9.7 4.4 8.6 0.2 3.9 3 2epp_A 0.13 13.5 13.0 0.62 11.3 4.2 3.3 2 2ctd_A 0.13 13.5 1.0 0.13 13.5 1.0 3.7 3 4m9v_C 0.14 13.2 0.5 0.83 10.7 0.1 2.2 2 1vx7_h 0.16 13.2 5.8 0.37 12.1 5.6 1.7 1 2k3v_A 0.17 13.4 14.3 0.69 11.5 4.6 3.3 3 2d9k_A 0.19 13.1 7.5 0.18 13.1 5.4 2.0 2 2bq4_A 0.21 12.6 7.5 0.89 10.6 0.8 2.4 2 1joc_A 0.22 13.0 11.7 2.2 9.7 3.2 3.3 2 1x5w_A 0.22 12.3 0.4 0.22 12.3 0.4 2.6 2 1wii_A 0.23 12.7 10.4 0.3 12.3 1.4 2.6 2 1wfk_A 0.24 12.8 6.5 0.53 11.7 0.6 2.4 2 2fqh_A 0.27 12.3 2.7 0.48 11.5 0.2 2.2 2 3j21_i 0.28 12.3 3.5 0.46 11.6 0.3 2.3 2 1ffk_W 0.29 12.5 5.4 0.61 11.5 5.4 1.6 1 2m48_A 0.3 11.3 5.9 0.43 10.8 5.9 1.4 1 3ov0_A 0.3 12.6 12.0 20 6.9 1.5 3.6 2 2el4_A 0.32 12.0 7.4 0.52 11.3 6.7 1.7 1 3oue_A 0.34 12.5 16.8 3.2 9.4 2.0 4.2 3 1fv5_A 0.38 12.3 5.8 63 5.4 0.0 4.0 2 2lvu_A 0.41 12.1 14.4 0.72 11.3 0.9 3.7 3 2eoz_A 0.44 11.7 7.4 16 6.7 7.4 2.4 1 2co8_A 0.49 12.1 14.0 2.3 9.9 0.2 4.1 3 2eps_A 0.5 11.6 8.0 0.72 11.1 1.0 2.5 2 1z2q_A 0.54 11.4 8.2 0.97 10.6 1.1 2.5 2 2yw8_A 0.63 11.8 11.0 36 6.2 11.0 2.9 1 2ctu_A 0.65 11.1 11.1 4.5 8.4 3.0 2.5 2 3t7l_A 0.73 11.3 12.1 8.2 8.0 0.8 3.7 2 2emg_A 0.76 11.3 12.9 7.2e+02 1.8 12.9 3.4 1 1x6e_A 0.77 11.0 9.9 2.3 9.5 0.3 3.6 3 1bhi_A 0.78 10.8 2.8 1.5 9.9 0.7 2.1 2 4ujr_c 0.8 11.3 12.5 23 6.7 1.6 3.8 2 2el6_A 0.81 11.1 10.9 8.5 7.8 0.7 3.7 2 2em9_A 0.92 11.1 15.1 4.7 8.8 0.1 4.0 2 2ytt_A 0.99 10.9 12.7 3.4 9.2 0.1 4.1 3 2ene_A 1 9.6 2.8 3.2 8.1 0.1 2.6 2 2lo4_A 1.1 10.3 8.7 4.7 8.3 8.7 2.1 1 1m1q_A 1.1 10.9 13.4 2.5 9.7 5.0 3.0 2 2rsi_A 1.1 10.3 8.6 4.3 8.4 8.7 2.0 1 3ouq_A 1.2 10.4 14.9 7.2 7.9 1.3 3.7 2 1yui_A 1.2 10.6 15.6 72 5.0 0.1 4.0 2 2eov_A 1.3 10.7 13.2 3.1e+02 3.0 13.2 3.0 1 1wjp_A 1.4 10.0 11.0 9.3 7.3 11.0 2.3 1 2i13_A 1.5 10.2 16.6 15 7.0 7.7 3.5 2 2lv2_A 1.6 10.3 13.7 5.1 8.6 1.3 3.9 2 2em4_A 1.7 10.2 14.1 1.3e+03 1.0 14.1 3.2 1 2m9a_A 1.8 9.9 15.8 3.8 8.9 1.0 3.8 3 2ytm_A 1.8 10.0 6.2 7.2 8.0 6.3 1.9 1 4lk9_A 1.9 10.2 12.6 1.5e+02 4.1 12.6 3.0 1 2dmi_A 2 10.1 11.4 34 6.1 11.3 2.6 1 2jp9_A 2 10.0 11.9 2.3 9.8 0.8 3.4 2 1x6f_A 2 10.1 10.9 88 4.8 9.3 2.9 2 4r2a_A 2.1 10.1 11.3 14 7.4 0.2 3.9 2 2ytf_A 2.1 9.8 12.1 62 5.1 12.1 2.7 1 2dlq_A 2.2 9.7 15.3 20 6.6 5.8 3.6 2 2mdg_A 2.4 9.5 16.6 3.9 8.8 0.2 3.8 3 2ytq_A 2.9 8.7 11.1 2.1 9.2 2.0 3.6 3 4qiw_P 2.9 9.7 13.6 1.3e+03 1.2 13.6 3.2 1 2j7j_A 2.9 9.4 13.7 21 6.7 4.9 3.5 2 1x6h_A 3 9.4 13.2 5.3e+02 2.2 13.2 3.1 1 2lt7_A 3.1 9.4 11.0 5.5e+03 -1.0 10.8 3.5 0 2eq4_A 3.1 9.4 13.2 3.3e+02 2.9 13.2 3.1 1 2kmk_A 3.2 9.4 13.4 5.1 8.8 0.3 4.0 3 2epx_A 3.3 9.4 15.9 4.6 8.9 1.2 3.9 3 2emx_A 3.6 8.8 8.8 15 6.8 8.3 2.2 2 3cao_A 3.7 9.2 14.5 86 4.8 14.4 2.9 1 1x3c_A 4 9.1 12.3 21 6.9 0.1 3.9 3 2ema_A 4 9.0 12.5 6.8 8.3 0.1 4.1 4 2epr_A 4.2 9.0 17.1 23 6.6 7.5 3.4 2 2ct1_A 4.2 8.7 12.1 57 5.0 12.1 2.7 1 3w5k_B 4.5 8.8 13.8 19 6.8 1.3 3.8 2 2ysp_A 4.9 8.8 13.1 1.2e+02 4.4 4.4 3.0 2 4r2q_A 5.2 8.7 14.1 34 6.1 6.4 3.3 2 2rsj_A 5.3 8.8 12.7 6.9e+02 2.0 12.7 3.0 1 2yt9_A 5.5 8.5 15.6 1.4e+02 4.0 0.1 3.9 2 2enc_A 5.7 7.8 5.7 33 5.3 0.3 3.0 2 3wwl_A 5.7 7.9 9.5 19 6.2 0.1 4.0 4 2i5o_A 5.8 8.3 12.8 1.1e+03 1.0 12.7 3.1 1 2gqj_A 6.2 8.4 15.4 4.2e+03 -0.7 15.2 3.4 0 1f2i_G 6.3 8.2 10.9 4 8.8 3.0 2.6 2 1vfy_A 6.4 8.2 13.6 2.1e+03 0.1 13.6 3.3 1 2lce_A 7.2 8.1 17.7 0.26 12.7 6.0 3.0 2 1vd4_A 7.6 8.0 16.2 2.5 9.6 1.2 3.9 3 2yth_A 8.6 7.9 14.6 99 4.5 1.5 3.4 3 2ma7_A 9.5 7.9 12.8 5.7e+02 2.2 12.8 2.8 1 2csh_A 9.8 7.7 17.4 31 6.0 2.0 4.2 2 2ytk_A 9.8 7.3 13.4 1.4e+02 3.6 11.8 2.6 1 3zms_C Domain annotation for each model (and alignments): >> 1e52_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.6 0.3 5.5e-09 1.8e-06 7 41 .. 139 173 .. 131 175 .. 0.94 Alignments for each domain: == domain 1 score: 28.6 bits; conditional E-value: 5.5e-09 1e52_A 7 aklieeLekeMqeAAeeLeFEkAAqlRDkIkeLkk 41 +++i+ L+ke++ + +eFE AA +RD+I+ L++ sp|P37569|MCSA_BACSU 139 RRQIDMLKKELESLIHQEEFENAAHVRDQIRLLEQ 173 6899***************************9998 PP >> 1ofw_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.6 4.1 2.5e-05 0.0081 97 204 .. 3 109 .. 1 131 [. 0.76 Alignments for each domain: == domain 1 score: 16.6 bits; conditional E-value: 2.5e-05 1ofw_A 97 CasCHkeekskeakea.kkkskekaecsechaeeasalekklkkaalaeekvpeavvlkaeakkkepvkfehkkhveekgeeCadCHke 184 C++CH++ ++ +++++ + ++ e + c++c +e++ + + ++ ++ ++ + ++++ ++ ++ f+h++ + +C +C + sp|P37569|MCSA_BACSU 3 CQECHERPATFHFTKVvNGEKIEVHICEQCAKENSDSYGISANQGFSIHNLLSGLLNMDSSFQNAGTQMFSHSEQI----SACPKCGMT 87 ******99998888772444556678999999887776666666666777778889999999999999*****987....589999988 PP 1ofw_A 185 kee..seeeekCseCHskkksk 204 ++ + + CseC+++ +s+ sp|P37569|MCSA_BACSU 88 FQQfrKIGRFGCSECYKTFHSN 109 77643467899****9986655 PP >> 4n4j_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.8 4.4 2.2e-05 0.007 43 144 .. 3 127 .. 1 179 [. 0.63 Alignments for each domain: == domain 1 score: 16.8 bits; conditional E-value: 2.2e-05 4n4j_A 43 CedCHgpehk....kl...kepspedCasCHakeseef...kkgklasha.....kalkaklleaalkkgkpaeeeasCsdCHeek... 113 C++CH+ ++ k+ ++ + C +C +++s+++ +++ ++ h+ ++++++++a + +++e+ ++C +C ++ sp|P37569|MCSA_BACSU 3 CQECHERPATfhftKVvngEKIEVHICEQCAKENSDSYgisANQGFSIHNllsglLNMDSSFQNAGTQMFSHSEQISACPKCGMTFqqf 91 ******97532222112225667899****99999875222222233333221113444555666666677889999999999973233 PP 4n4j_A 114 ....egsCtsCHtr.hefssaearkpeaCasCHsgk 144 + C++C+++ h+ ++ rk ++ ++ H gk sp|P37569|MCSA_BACSU 92 rkigRFGCSECYKTfHSNITPILRKVHSGNTVHAGK 127 3333689****9874555556667777777777764 PP >> 2adr_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.2 0.4 0.00012 0.039 2 42 .. 27 91 .. 26 96 .. 0.60 2 ? 7.4 1.3 0.035 11 29 45 .. 96 112 .. 92 126 .. 0.76 Alignments for each domain: == domain 1 score: 15.2 bits; conditional E-value: 0.00012 2adr_A 2 ykCpiCgktFaskss......LkrH...................mrthtgekpfkCpeCgktFssk 42 ++C++C k+ + +++ + H m + ++e+ Cp+Cg tF + sp|P37569|MCSA_BACSU 27 HICEQCAKENSDSYGisanqgFSIHnllsgllnmdssfqnagtqMFS-HSEQISACPKCGMTFQQF 91 78999999766554411111133334444444444444444442455.569************975 PP == domain 2 score: 7.4 bits; conditional E-value: 0.035 2adr_A 29 pfkCpeCgktFssksaL 45 +f C+eC ktF+s sp|P37569|MCSA_BACSU 96 RFGCSECYKTFHSNITP 112 699********986544 PP >> 3rsn_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 0.9 0.0012 0.38 19 99 .. 3 79 .. 1 83 [. 0.68 2 ? 6.1 0.4 0.058 19 16 34 .. 96 114 .. 79 125 .. 0.73 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 0.0012 3rsn_A 19 CdkCkk...wfhekclkllkgkllpfdtfyefvCkvCskggkes..ferkqanwvqilhlalanLtesakkegekkkyFslekeii 99 C++C++ fh +k++ + ++++ +C++C k++ +s ++ +q + l l n+ + ++++ ++Fs+ ++i sp|P37569|MCSA_BACSU 3 CQECHErpaTFHF-------TKVVNGEKIEVHICEQCAKENSDSygISANQGFSIHNLLSGLLNMDS--SFQNAGTQMFSHSEQIS 79 7777663333444.......45688899***********9999833344444455555556666664..46778999***999985 PP == domain 2 score: 6.1 bits; conditional E-value: 0.058 3rsn_A 16 mlqCdkCkkwfhekclkll 34 + C++C+k fh + + +l sp|P37569|MCSA_BACSU 96 RFGCSECYKTFHSNITPIL 114 578*********9987665 PP >> 3cc2_Z # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.5 0.1 1.8 5.9e+02 53 63 .. 25 35 .. 2 54 .. 0.58 2 ? 13.4 0.2 0.00037 0.12 25 66 .. 67 108 .. 59 125 .. 0.82 Alignments for each domain: == domain 1 score: 1.5 bits; conditional E-value: 1.8 3cc2_Z 53 giWkCkkCgkt 63 +++ C++C k sp|P37569|MCSA_BACSU 25 EVHICEQCAKE 35 35555555554 PP == domain 2 score: 13.4 bits; conditional E-value: 0.00037 3cc2_Z 25 rvkkieisqhakytCpfCgkekvkraatgiWkCkkCgktfag 66 +++ +++++ Cp+Cg + + ++ g + C++C ktf + sp|P37569|MCSA_BACSU 67 AGTQMFSHSEQISACPKCGMTFQQFRKIGRFGCSECYKTFHS 108 55667777788899*******98888999**********986 PP >> 1vq8_Z # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.0 0.1 8.6 2.8e+03 9 17 .. 27 35 .. 20 41 .. 0.73 2 ? 13.1 0.7 0.00034 0.11 19 37 .. 71 89 .. 67 142 .. 0.66 Alignments for each domain: == domain 1 score: -1.0 bits; conditional E-value: 8.6 1vq8_Z 9 ykCpnCGat 17 + C+ C ++ sp|P37569|MCSA_BACSU 27 HICEQCAKE 35 567777665 PP == domain 2 score: 13.1 bits; conditional E-value: 0.00034 1vq8_Z 19 vfrpgtgkwkCpyCgyefa 37 +f+ + ++ Cp+Cg +f+ sp|P37569|MCSA_BACSU 71 MFSHSEQISACPKCGMTFQ 89 5566666666666655554 PP >> 3j21_g # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.1 1.7 0.014 4.4 9 33 .. 26 88 .. 1 93 [. 0.66 2 ? 3.3 0.0 0.43 1.4e+02 12 24 .. 99 111 .. 89 112 .. 0.88 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.014 3j21_g 9 kyiCprCgar..............................l........ppgawnCrKCGytf 33 ++iC C + + ++ ++ C KCG tf sp|P37569|MCSA_BACSU 26 VHICEQCAKEnsdsygisanqgfsihnllsgllnmdssfqNagtqmfshSEQISACPKCGMTF 88 5677777443555555555555555555444444444444133333433688999*****995 PP == domain 2 score: 3.3 bits; conditional E-value: 0.43 3j21_g 12 CprCgarlppgaw 24 C+ C+++ + +++ sp|P37569|MCSA_BACSU 99 CSECYKTFHSNIT 111 ******9998876 PP >> 1gyo_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.1 3.8 0.00013 0.04 17 86 .. 3 104 .. 1 105 [. 0.64 2 ? 6.1 1.0 0.083 27 6 43 .. 73 108 .. 69 171 .. 0.57 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 0.00013 1gyo_A 17 CkaCHhkaeekk.........eeeesCleCHkkeke............k............keekelkkavhekkevkCveCHkkvkee 72 C++CH++ + + e++ C +C k++++ + +++ ++ h+++ +C +C + ++ sp|P37569|MCSA_BACSU 3 CQECHERPATFHftkvvngekIEVHICEQCAKENSDsygisanqgfsiHnllsgllnmdssFQNAGTQMFSHSEQISACPKCGMTFQQ- 90 *****987543334455555468899*****98876455555555555045544443332223344445557778899*****99985. PP 1gyo_A 73 kkqksplsCaeCHk 86 ++ ++ C+eC k sp|P37569|MCSA_BACSU 91 FRKIGRFGCSECYK 104 56689999****76 PP == domain 2 score: 6.1 bits; conditional E-value: 0.083 1gyo_A 6 shkkhaekkidCkaCHhkaeekk.eeeesCleCHkkeke 43 sh+++ + +C +C + ++ + C+eC k+ ++ sp|P37569|MCSA_BACSU 73 SHSEQIS---ACPKCGMTFQQFRkIGRFGCSECYKTFHS 108 4444444...67777766654321344557777765544 PP >> 1klr_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 0.5 0.04 13 4 14 .. 80 90 .. 71 94 .. 0.88 2 ? 10.5 0.0 0.0053 1.7 3 15 .. 97 109 .. 96 143 .. 0.84 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.04 1klr_A 4 kCpeCgksfss 14 Cp+Cg++f + sp|P37569|MCSA_BACSU 80 ACPKCGMTFQQ 90 5********76 PP == domain 2 score: 10.5 bits; conditional E-value: 0.0053 1klr_A 3 fkCpeCgksfssk 15 f C+eC k+f+s sp|P37569|MCSA_BACSU 97 FGCSECYKTFHSN 109 89********985 PP >> 3o9x_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 0.3 0.083 27 1 27 [. 3 37 .. 3 79 .. 0.84 2 ? 8.3 0.1 0.017 5.6 1 73 [. 81 162 .. 74 181 .. 0.56 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.083 3o9x_A 1 CelCgae.......etvkveg.ellvCpsCgeevk 27 C+ C+++ + v+ e+ e+++C++C++e sp|P37569|MCSA_BACSU 3 CQECHERpatfhftKVVNGEKiEVHICEQCAKENS 37 89999999999998888899999*******87754 PP == domain 2 score: 8.3 bits; conditional E-value: 0.017 3o9x_A 1 CelCgae....etvkveg.ellvCpsCgeevkdeeeg......kkveeallellrelk.ellegerlreaReelg..lsqeelAekl 73 C+ Cg + + + + C++C++ ++++ + + ++ + ++ +++ +l +++++ + +el + qee+ ++ sp|P37569|MCSA_BACSU 81 CPKCGMTfqqfR-----KiGRFGCSECYKTFHSNITPilrkvhSGNTVHAGKIPKRIGgNLHVRRQIDMLKKELEslIHQEEFENAA 162 999999986332.....3345889999888877533311111112222233344445555666666666665554334455555544 PP >> 1z1n_X # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 5.2 0.00021 0.067 152 245 .. 3 108 .. 1 165 [. 0.50 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 0.00021 1z1n_X 152 CvsCHkphka.......kkkkegpeaCqsCHeekskaevke....klkakkkeaalleakkkekkvkfshkkhaeaekeCesCHkkeek 229 C++CH+ ++ +++k + + C++C +e+s++ + ++ ++ + ll+++++ +++ ++ h+e+ +C +C + ++ sp|P37569|MCSA_BACSU 3 CQECHERPATfhftkvvNGEKIEVHICEQCAKENSDS-YGIsanqGFSIHNLLSGLLNMDSSFQNAGTQMFSHSEQISACPKCGMTFQQ 90 5555555444222111112334445555555555422.211111111112222222222333333333333444444555555555544 PP 1z1n_X 230 skk..seacvsCHkekkk 245 +k + c++C k+ ++ sp|P37569|MCSA_BACSU 91 FRKigRFGCSECYKTFHS 108 433223345555544433 PP >> 2d9h_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 4.2 0.039 13 6 47 .. 27 90 .. 2 94 .. 0.64 2 ? 8.3 5.7 0.019 6.1 8 48 .. 81 109 .. 81 125 .. 0.72 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.039 2d9h_A 6 ykCeiCgktfgsrsaLr.........................rHqrthhgekekpfkCsvCgktFst 47 + Ce+C k+ + ++ + ++ h + e C++Cg tF + sp|P37569|MCSA_BACSU 27 HICEQCAKENSDSYGISanqgfsihnllsgllnmdssfqnagTQMFSH-S--EQISACPKCGMTFQQ 90 789999999888888882222222222222222222222222233333.3..66788********86 PP == domain 2 score: 8.3 bits; conditional E-value: 0.019 2d9h_A 8 CeiCgktfgsrsaLrrHqrthhgekekpfkCsvCgktFstk 48 C++Cg tf++ +f Cs+C+ktF+++ sp|P37569|MCSA_BACSU 81 CPKCGMTFQQFRKI------------GRFGCSECYKTFHSN 109 55666666432111............37**********996 PP >> 2lvh_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 5.4 0.004 1.3 10 52 .. 26 92 .. 1 93 [. 0.56 2 ? 7.0 1.7 0.048 15 37 50 .. 95 108 .. 92 110 .. 0.81 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.004 2lvh_A 10 pykCpeCgksFkskeqLq.........................rHmrthtgekpfkCdvCgkrFssks 52 + C++C k ++++ + m +h +e+ C++Cg++F + + sp|P37569|MCSA_BACSU 26 VHICEQCAKENSDSYGISanqgfsihnllsgllnmdssfqnagTQMFSH-SEQISACPKCGMTFQQFR 92 3778888775444433332222222222223333333333333455555.5889**********9876 PP == domain 2 score: 7.0 bits; conditional E-value: 0.048 2lvh_A 37 kpfkCdvCgkrFss 50 +f C++C k+F+s sp|P37569|MCSA_BACSU 95 GRFGCSECYKTFHS 108 57999999999986 PP >> 2en6_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.7 0.3 1.3 4.2e+02 8 19 .. 26 37 .. 3 55 .. 0.73 2 ? 5.8 0.1 0.13 43 7 21 .. 77 91 .. 67 94 .. 0.81 3 ? 8.1 0.1 0.025 8.2 9 33 .. 97 120 .. 95 132 .. 0.72 Alignments for each domain: == domain 1 score: 2.7 bits; conditional E-value: 1.3 2en6_A 8 pykCpeCgksFs 19 ++ C++C k s sp|P37569|MCSA_BACSU 26 VHICEQCAKENS 37 589****88655 PP == domain 2 score: 5.8 bits; conditional E-value: 0.13 2en6_A 7 kpykCpeCgksFsrk 21 + Cp Cg +F ++ sp|P37569|MCSA_BACSU 77 QISACPKCGMTFQQF 91 5567********876 PP == domain 3 score: 8.1 bits; conditional E-value: 0.025 2en6_A 9 ykCpeCgksFsrkssLk.rHmrsHtg 33 + C+eC k+F +s+ + +++H+g sp|P37569|MCSA_BACSU 97 FGCSECYKTF--HSNITpILRKVHSG 120 89********..44443344555555 PP >> 2lbm_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 4.6 0.00048 0.16 2 71 .. 2 118 .. 1 123 [. 0.76 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 0.00048 2lbm_A 2 lCssCgksvh.....sslehplleklsckeckk.s....................................ekdenddeCevCgdgge. 47 +C++C++ ++ + +++e c++c+k + +++e+ + C Cg + sp|P37569|MCSA_BACSU 2 ICQECHERPAtfhftKVVNGEKIEVHICEQCAKeNsdsygisanqgfsihnllsgllnmdssfqnagtqmfSHSEQISACPKCGMTFQq 90 799999875555577777888889999****995257788999999999999999999999988888877766788899****976432 PP 2lbm_A 48 .....lllCdsCprafhleClkppleevp 71 + C++C ++fh + + l++v sp|P37569|MCSA_BACSU 91 frkigRFGCSECYKTFHSNITP-ILRKVH 118 33344778*********98554.566655 PP >> 4w20_p # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.3 0.1 4.7 1.5e+03 50 60 .. 24 34 .. 2 54 .. 0.62 2 ? 11.7 0.1 0.0013 0.42 19 64 .. 63 108 .. 58 147 .. 0.87 Alignments for each domain: == domain 1 score: 0.3 bits; conditional E-value: 4.7 4w20_p 50 vgiWkckscgk 60 ++ c++c k sp|P37569|MCSA_BACSU 24 IEVHICEQCAK 34 33334555544 PP == domain 2 score: 11.7 bits; conditional E-value: 0.0013 4w20_p 19 slrkqvkkieisqhakytCpfCgktkvkrqavgiWkckscgktvag 64 s++ +++ ++++ Cp Cg t + ++ g + c++c kt+ + sp|P37569|MCSA_BACSU 63 SFQNAGTQMFSHSEQISACPKCGMTFQQFRKIGRFGCSECYKTFHS 108 555556667777788889*******999999************987 PP >> 2eq0_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.1 7.3 3.9 1.3e+03 8 22 .. 78 92 .. 2 94 .. 0.86 2 ? 9.6 0.1 0.0084 2.7 8 23 .. 96 111 .. 95 140 .. 0.77 Alignments for each domain: == domain 1 score: 1.1 bits; conditional E-value: 3.9 2eq0_A 8 pyeCpeCgksFktks 22 Cp Cg +F++++ sp|P37569|MCSA_BACSU 78 ISACPKCGMTFQQFR 92 456999999999875 PP == domain 2 score: 9.6 bits; conditional E-value: 0.0084 2eq0_A 8 pyeCpeCgksFktkss 23 ++ C+eC k+F ++ + sp|P37569|MCSA_BACSU 96 RFGCSECYKTFHSNIT 111 589********88754 PP >> 3zf7_o # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.4 0.1 4.3 1.4e+03 51 63 .. 23 35 .. 3 57 .. 0.62 2 ? 11.2 0.1 0.0018 0.59 27 66 .. 69 108 .. 58 156 .. 0.86 Alignments for each domain: == domain 1 score: 0.4 bits; conditional E-value: 4.3 3zf7_o 51 avgiWkckscgkt 63 + ++ c++c k sp|P37569|MCSA_BACSU 23 KIEVHICEQCAKE 35 3444446666544 PP == domain 2 score: 11.2 bits; conditional E-value: 0.0018 3zf7_o 27 kkieisqhakytCpfCgktkvkrqavgiWkckscgktvag 66 +++ ++++ Cp Cg t + ++ g + c++c kt+ + sp|P37569|MCSA_BACSU 69 TQMFSHSEQISACPKCGMTFQQFRKIGRFGCSECYKTFHS 108 566667777889*******999999************987 PP >> 1x4u_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 1.2 0.12 38 34 63 .. 2 34 .. 1 37 [. 0.65 2 ? 11.9 1.2 0.0013 0.43 6 38 .. 76 110 .. 73 139 .. 0.81 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.12 1x4u_A 34 vCsscsskrvplpklgve...ekpvrvCdsCys 63 +C++c ++ + +v + +v++C++C + sp|P37569|MCSA_BACSU 2 ICQECHERPATFHFTKVVngeKIEVHICEQCAK 34 688887776554333222343789*******87 PP == domain 2 score: 11.9 bits; conditional E-value: 0.0013 1x4u_A 6 seassCmeCqkkFslfrr..rhhCrlCGkvvCssc 38 +++s C++C++ F+ fr+ r C C k + s+ sp|P37569|MCSA_BACSU 76 EQISACPKCGMTFQQFRKigRFGCSECYKTFHSNI 110 67899*********997666999999999987765 PP >> 2dmd_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.0 9.3 0.025 8 3 70 .. 27 108 .. 1 173 [. 0.75 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.025 2dmd_A 3 ykCpeCgksfssksslkrHl..rth......................tgekpykCpkCgksfssksslkrHlrthhgekpykCslCgks 67 + C++C k+ s+++ +++ + ++h ++e+ CpkCg +f++ +++ ++ Cs+C k+ sp|P37569|MCSA_BACSU 27 HICEQCAKENSDSYGISANQgfSIHnllsgllnmdssfqnagtqmfsHSEQISACPKCGMTFQQFRKI----------GRFGCSECYKT 105 67888888888777766665333444444444445555555555555678889999999999985443..........35777777777 PP 2dmd_A 68 fss 70 f+s sp|P37569|MCSA_BACSU 106 FHS 108 776 PP >> 2epp_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.7 0.6 0.48 1.5e+02 6 14 .. 21 34 .. 2 56 .. 0.64 2 ? 5.1 0.4 0.17 56 8 18 .. 80 90 .. 73 93 .. 0.81 3 ? 8.6 0.2 0.014 4.4 7 19 .. 97 109 .. 95 132 .. 0.76 Alignments for each domain: == domain 1 score: 3.7 bits; conditional E-value: 0.48 2epp_A 6 P.....ykCseCgk 14 + C++C k sp|P37569|MCSA_BACSU 21 GekievHICEQCAK 34 03334489999965 PP == domain 2 score: 5.1 bits; conditional E-value: 0.17 2epp_A 8 kCseCgksFsr 18 +C++Cg +F + sp|P37569|MCSA_BACSU 80 ACPKCGMTFQQ 90 7*****99965 PP == domain 3 score: 8.6 bits; conditional E-value: 0.014 2epp_A 7 ykCseCgksFsrk 19 + CseC k+F ++ sp|P37569|MCSA_BACSU 97 FGCSECYKTFHSN 109 89********876 PP >> 2ctd_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 4.2 0.0019 0.62 19 60 .. 27 92 .. 2 96 .. 0.60 2 ? 6.0 1.9 0.093 30 46 59 .. 96 109 .. 92 170 .. 0.77 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.0019 2ctd_A 19 fkCdqCgksfssk......................ssLk...rHrrshtgekpfkCevCgktFssks 60 + C+qC k s + ss++ ++ s ++e+ C++Cg+tF++ + sp|P37569|MCSA_BACSU 27 HICEQCAKENSDSygisanqgfsihnllsgllnmdSSFQnagTQMFS-HSEQISACPKCGMTFQQFR 92 78999998666663333333333333333333333222233344445.567************9976 PP == domain 2 score: 6.0 bits; conditional E-value: 0.093 2ctd_A 46 pfkCevCgktFssk 59 +f C++C ktF+s sp|P37569|MCSA_BACSU 96 RFGCSECYKTFHSN 109 46777777777764 PP >> 4m9v_C # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.0 3.8 6.7 2.2e+03 6 40 .. 2 34 .. 1 39 [. 0.53 2 ? 13.5 1.0 0.00041 0.13 5 45 .. 27 91 .. 21 96 .. 0.62 3 ? 3.6 7.2 0.51 1.6e+02 7 44 .. 81 108 .. 81 166 .. 0.87 Alignments for each domain: == domain 1 score: -0.0 bits; conditional E-value: 6.7 4m9v_C 6 kCpeCgksfksrssLnrHlrt.hhgekp..ykCpvCgk 40 +C+eC ++ ++ H gek + C++C k sp|P37569|MCSA_BACSU 2 ICQECHERPATF-----HFTKvVNGEKIevHICEQCAK 34 677777776666.....433313333333356666655 PP == domain 2 score: 13.5 bits; conditional E-value: 0.00041 4m9v_C 5 fkCpeCgk............sfksrssLnrHlrth............hgekpykCpvCgktFssk 45 ++C++C k +f+ ++ L l++ h+e+ Cp+Cg tF+ sp|P37569|MCSA_BACSU 27 HICEQCAKensdsygisanqGFSIHNLLSGLLNMDssfqnagtqmfsHSEQISACPKCGMTFQQF 91 889999764444444444447766666665544322222222222228999***********976 PP == domain 3 score: 3.6 bits; conditional E-value: 0.51 4m9v_C 7 CpeCgksfksrssLnrHlrthhgekpykCpvCgktFss 44 Cp+Cg +f + + ++ C++C ktF s sp|P37569|MCSA_BACSU 81 CPKCGMTFQQF----------RKIGRFGCSECYKTFHS 108 88999999888..........55667999999999976 PP >> 1vx7_h # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.7 0.1 3.6 1.1e+03 50 63 .. 22 35 .. 2 57 .. 0.62 2 ? 10.7 0.1 0.0026 0.83 25 66 .. 67 108 .. 58 152 .. 0.85 Alignments for each domain: == domain 1 score: 0.7 bits; conditional E-value: 3.6 1vx7_h 50 qavgiWkCkscgkt 63 ++ + C++c k sp|P37569|MCSA_BACSU 22 EKIEVHICEQCAKE 35 33444456666554 PP == domain 2 score: 10.7 bits; conditional E-value: 0.0026 1vx7_h 25 rvkkieisqhakytCpfCgktkvkrqavgiWkCkscgktfag 66 +++ ++++ Cp Cg t + ++ g + C++c ktf + sp|P37569|MCSA_BACSU 67 AGTQMFSHSEQISACPKCGMTFQQFRKIGRFGCSECYKTFHS 108 55666677778889*******9999999***********987 PP >> 2k3v_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 5.6 0.0011 0.37 3 68 .. 3 104 .. 1 109 [. 0.57 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 0.0011 2k3v_A 3 CesCHeeheskk......akaeenetClsCHkkekel.....a.......................aehskha.geleCtsCHkphke. 55 C++CHe+ ++ + ++ e + C +C k++++ + ++ +h+ + +C +C ++ ++ sp|P37569|MCSA_BACSU 3 CQECHERPATFHftkvvnGEKIEVHICEQCAKENSDSygisaNqgfsihnllsgllnmdssfqnagTQMFSHSeQISACPKCGMTFQQf 91 *****98764332222324578899******9988743333303333333444444333333322212233432567899999988763 PP 2k3v_A 56 kekskelCleCHe 68 ++ + C+eC + sp|P37569|MCSA_BACSU 92 RKIGRFGCSECYK 104 4556677888865 PP >> 2d9k_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 6.8 0.021 6.7 9 57 .. 18 92 .. 1 94 [. 0.56 2 ? 11.5 4.6 0.0021 0.69 11 55 .. 74 108 .. 70 111 .. 0.82 3 ? 5.7 0.8 0.14 44 44 55 .. 97 108 .. 92 133 .. 0.65 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.021 2d9k_A 9 tHtgekp..ykCpkCgksfaqrselkrHqrt..h......................tgekpykCpeCgksfsrks 57 + +gek + C++C k+ ++++ + q h ++e++ Cp Cg +f++++ sp|P37569|MCSA_BACSU 18 VVNGEKIevHICEQCAKENSDSYGISANQGFsiHnllsgllnmdssfqnagtqmfsHSEQISACPKCGMTFQQFR 92 45667755588999999755433322222111111112222222222222222222889***********99865 PP == domain 2 score: 11.5 bits; conditional E-value: 0.0021 2d9k_A 11 tgekpykCpkCgksfaqrselkrHqrthtgekpykCpeCgksfsr 55 + e+ CpkCg +f+q++++ ++ C+eC k+f++ sp|P37569|MCSA_BACSU 74 HSEQISACPKCGMTFQQFRKIG----------RFGCSECYKTFHS 108 5688999********9665554..........69********986 PP == domain 3 score: 5.7 bits; conditional E-value: 0.14 2d9k_A 44 ykCpeCgksfsr 55 + C+eC k+f++ sp|P37569|MCSA_BACSU 97 FGCSECYKTFHS 108 455555555543 PP >> 2bq4_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 5.4 0.00056 0.18 17 89 .. 3 104 .. 1 108 [. 0.63 2 ? 6.4 1.3 0.074 24 4 41 .. 71 107 .. 68 172 .. 0.52 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 0.00056 2bq4_A 17 CkaCHhkvee..........kekvkscleCHkekk.......skeak................ekdkvslkkavhvkkevkCveCHkkv 72 C++CH++ + k +v+ c +C ke++ + + + +++ ++ h+++ +C +C + sp|P37569|MCSA_BACSU 3 CQECHERPATfhftkvvngeKIEVHICEQCAKENSdsygisaN---QgfsihnllsgllnmdsSFQNAGTQMFSHSEQISACPKCGMTF 88 ******9886555555544447999******997522333220...13334444444444332333444555567777789****9988 PP 2bq4_A 73 kkekkkkkptsCaecHk 89 ++ +k + C+ec k sp|P37569|MCSA_BACSU 89 QQ-FRKIGRFGCSECYK 104 86.45678999***976 PP == domain 2 score: 6.4 bits; conditional E-value: 0.074 2bq4_A 4 kFsHkkhaekkidCkaCHhkveekek..vkscleCHkekk 41 +FsH++ +++ C +C + ++ k c+eC k+ + sp|P37569|MCSA_BACSU 71 MFSHSEQISA---CPKCGMTFQQFRKigRFGCSECYKTFH 107 5777776665...777777776543311345778877643 PP >> 1joc_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.4 1.0 0.12 39 39 65 .. 2 34 .. 1 36 [. 0.66 2 ? 10.6 0.8 0.0028 0.89 10 43 .. 75 110 .. 67 133 .. 0.79 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.12 1joc_A 39 fCssCsskkvll......pssekpvrvCdsCye 65 +C++C ++ ++ + ++ +v +C++C++ sp|P37569|MCSA_BACSU 2 ICQECHERPATFhftkvvNGEKIEVHICEQCAK 34 69999986544322222266889999****986 PP == domain 2 score: 10.6 bits; conditional E-value: 0.0028 1joc_A 10 dsevssCmgCqkeFsltrr..rhhCrnCgkvfCssC 43 +++s C++C+ F+ +r+ r C+ C k f s+ sp|P37569|MCSA_BACSU 75 SEQISACPKCGMTFQQFRKigRFGCSECYKTFHSNI 110 578899*********998555999999999987764 PP >> 1x5w_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.7 3.2 0.0068 2.2 6 46 .. 27 91 .. 2 94 .. 0.62 2 ? 6.5 1.2 0.071 23 34 45 .. 97 108 .. 93 121 .. 0.82 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 0.0068 1x5w_A 6 ykCpiCgk............sfksrssL..........q...rHlrtHtgekpfkCkeCgktfssk 46 + C++C k +f+ + L q + + +H+ e+ C++Cg tf+++ sp|P37569|MCSA_BACSU 27 HICEQCAKensdsygisanqGFSIHNLLsgllnmdssfQnagTQMFSHS-EQISACPKCGMTFQQF 91 5677777744444444444422222211111111111122225577886.999**********986 PP == domain 2 score: 6.5 bits; conditional E-value: 0.071 1x5w_A 34 fkCkeCgktfss 45 f+C+eC ktf+s sp|P37569|MCSA_BACSU 97 FGCSECYKTFHS 108 888888888876 PP >> 1wii_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.3 2.7 6 1.9e+03 22 51 .. 3 34 .. 1 49 [. 0.56 2 ? 12.3 0.4 0.00069 0.22 17 64 .. 76 117 .. 62 121 .. 0.83 Alignments for each domain: == domain 1 score: -0.3 bits; conditional E-value: 6 1wii_A 22 CpfCnheksvsvkldk...kkgvaelsCrvCgl 51 C C+++ + ++k +++ + C++C sp|P37569|MCSA_BACSU 3 CQECHERP-ATFHFTKvvnGEKIEVHICEQCAK 34 55555432.244444322234455566666654 PP == domain 2 score: 12.3 bits; conditional E-value: 0.00069 1wii_A 17 pktFtCpfCnheksvsvkldkkkgvaelsCrvCglkfetevnelsepv 64 +++ +Cp C+ ++++ +++++ C++C +f+ +++++ +v sp|P37569|MCSA_BACSU 76 EQISACPKCGM------TFQQFRKIGRFGCSECYKTFHSNITPILRKV 117 66778*****8......5666778******************998887 PP >> 1wfk_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.8 2.1 0.21 67 30 58 .. 2 35 .. 1 39 [. 0.61 2 ? 12.3 1.4 0.00094 0.3 3 36 .. 77 112 .. 75 141 .. 0.80 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.21 1wfk_A 30 fCskCsskkvalpkfg.....ekpvrvCdsCyek 58 +C++C ++ ++ + + + +v++C++C ++ sp|P37569|MCSA_BACSU 2 ICQECHERPATFHFTKvvngeKIEVHICEQCAKE 35 688888866544221122222679*******986 PP == domain 2 score: 12.3 bits; conditional E-value: 0.00094 1wfk_A 3 eaksCmgCgkkFslfrr..rhhCrlCGkvfCskCss 36 + + C++Cg F+ fr+ r C C k f s+ + sp|P37569|MCSA_BACSU 77 QISACPKCGMTFQQFRKigRFGCSECYKTFHSNITP 112 5789**********99877999****9999888765 PP >> 2fqh_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.1 0.8 0.37 1.2e+02 17 47 .. 3 36 .. 1 50 [. 0.75 2 ? 11.7 0.6 0.0017 0.53 13 61 .. 77 120 .. 68 167 .. 0.68 Alignments for each domain: == domain 1 score: 4.1 bits; conditional E-value: 0.37 2fqh_A 17 CalCGa..teeeyyeeidGekl.yFCCdhcakef 47 C+ C + ++++ ++Gek C++cake sp|P37569|MCSA_BACSU 3 CQECHErpATFHFTKVVNGEKIeVHICEQCAKEN 36 7778774446678889999885367899999885 PP == domain 2 score: 11.7 bits; conditional E-value: 0.0017 2fqh_A 13 ketgCalCGateeeyyeeidGeklyFCCdhcakefeniieevkkrtgks 61 + + C CG+t +++ + F C++c+k f+ i + ++ + sp|P37569|MCSA_BACSU 77 QISACPKCGMTFQQFRKI-----GRFGCSECYKTFHSNITPILRKVHSG 120 557899999999988653.....349*************9998765433 PP >> 3j21_i # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.5 0.2 4 1.3e+03 53 63 .. 25 35 .. 2 48 .. 0.60 2 ? 11.5 0.2 0.0015 0.48 28 66 .. 70 108 .. 60 116 .. 0.82 Alignments for each domain: == domain 1 score: 0.5 bits; conditional E-value: 4 3j21_i 53 giWkcksCgkt 63 + c++C k sp|P37569|MCSA_BACSU 25 EVHICEQCAKE 35 33345555443 PP == domain 2 score: 11.5 bits; conditional E-value: 0.0015 3j21_i 28 kieisqhakytCpfCgktkvkrqavgiWkcksCgktvag 66 ++ ++++ Cp+Cg t + ++ g + c++C kt+ + sp|P37569|MCSA_BACSU 70 QMFSHSEQISACPKCGMTFQQFRKIGRFGCSECYKTFHS 108 55566677789*******8888999***********987 PP >> 1ffk_W # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.0 0.3 2.9 9.2e+02 42 54 .. 23 35 .. 2 46 .. 0.61 2 ? 11.6 0.3 0.0014 0.46 18 57 .. 69 108 .. 60 113 .. 0.79 Alignments for each domain: == domain 1 score: 1.0 bits; conditional E-value: 2.9 1ffk_W 42 avgiWkCksCgkt 54 + + C++C k sp|P37569|MCSA_BACSU 23 KIEVHICEQCAKE 35 3344456666554 PP == domain 2 score: 11.6 bits; conditional E-value: 0.0014 1ffk_W 18 kkieisqhakytCpfCgktkvkrqavgiWkCksCgktfag 57 +++ ++++ Cp Cg t + ++ g + C++C ktf + sp|P37569|MCSA_BACSU 69 TQMFSHSEQISACPKCGMTFQQFRKIGRFGCSECYKTFHS 108 555566666778*******8888999************87 PP >> 2m48_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 5.4 0.0019 0.61 24 112 .. 2 106 .. 1 112 [. 0.51 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 0.0019 2m48_A 24 tCpsCgtsfCfkCkkewhegl.....tCeeaeeeakk.....lekeleleeek....a..eekkeeeaseelikentkpCpkCkvaiek 96 +C++C+ + + + + +g+ Ce++++e+++ ++ +++++ + ++ ++ +++ +e++ CpkC++ ++ sp|P37569|MCSA_BACSU 2 ICQECHERPATFHFTKVVNGEkievhICEQCAKENSDsygisANQGFSIHNLLsgllNmdSSFQNAGTQMFSHSEQISACPKCGMTFQQ 90 56666643333333322221111111366665555444444422233222111111111011222223334456899************ PP 2m48_A 97 negcnhmtckkCgaef 112 + c++C + f sp|P37569|MCSA_BACSU 91 FRKIGRFGCSECYKTF 106 ************8877 PP >> 3ov0_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 5.9 0.0013 0.43 83 260 .. 3 102 .. 1 165 [. 0.44 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 0.0013 3ov0_A 83 CasCHgehkekekkkltlkkkekektCvsCHkkkkafkakeeCasCHkekkeekeiklkkeeqpvkfshkahagkedCksCHseakkkk 171 C++CH++ ++ + +k+ +k + sp|P37569|MCSA_BACSU 3 CQECHERPATFHFTKVVNGEKIE------------------------------------------------------------------ 25 33333332222222222222222.................................................................. PP 3ov0_A 172 gskkvtkakieagksCesCHkakkaf..ekneecakchkekke....kiewkrkgkvyfshkkhvkalkCasCHgkheemkseelsm.k 253 Ce+C k+++ ++++ ++h+ + + ++++ g+++fsh+++ +C +C ++ ++ ++ sp|P37569|MCSA_BACSU 26 ------------VHICEQCAKENSDSygISANQGFSIHNLLSGllnmDSSFQNAGTQMFSHSEQI--SACPKCGMTFQQF-----RKiG 95 ............33333333333221111112222333222221111111111133344443322..2333333332211.....1111 PP 3ov0_A 254 kkaCleC 260 + C eC sp|P37569|MCSA_BACSU 96 RFGCSEC 102 2222222 PP >> 2el4_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.2 3.5 0.2 65 7 21 .. 77 91 .. 3 96 .. 0.85 2 ? 6.9 1.5 0.062 20 8 21 .. 96 109 .. 92 131 .. 0.75 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.2 2el4_A 7 kpykCpeCgktFsrk 21 + Cp+Cg tF+++ sp|P37569|MCSA_BACSU 77 QISACPKCGMTFQQF 91 455699999999876 PP == domain 2 score: 6.9 bits; conditional E-value: 0.062 2el4_A 8 pykCpeCgktFsrk 21 ++ C+eC ktF ++ sp|P37569|MCSA_BACSU 96 RFGCSECYKTFHSN 109 589*******9766 PP >> 3oue_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 6.7 0.0016 0.52 16 120 .. 3 104 .. 1 126 [. 0.50 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.0016 3oue_A 16 CesCHkeaekkk..eaklakleskkkCssCHkekkal..keeeecakchekkkekelelkka..eakkvkfshakhlkkleCssCHkeh 98 C++CH++ ++ + ++ ++ + + C++C ke+++ ++++ ++h+ + l++++ +a++ fsh++++ +C +C + sp|P37569|MCSA_BACSU 3 CQECHERPATFHftKVVNGEKIEVHICEQCAKENSDSygISANQGFSIHNLLS-GLLNMDSSfqNAGTQMFSHSEQI--SACPKCGMTF 88 89999888766543333333445677999988776543322334455665442.22333322223555556665554..3455554444 PP 3oue_A 99 eeaekkkkkltmeeksCleCHk 120 ++ +k +++ C eC k sp|P37569|MCSA_BACSU 89 QQFRK------IGRFGCSECYK 104 43331......22223444433 PP >> 1fv5_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.0 2.2 4.5 1.4e+03 7 14 .. 27 34 .. 2 55 .. 0.61 2 ? 8.8 0.2 0.015 4.8 8 19 .. 80 91 .. 68 94 .. 0.84 3 ? 9.4 2.0 0.0098 3.2 6 21 .. 96 111 .. 95 156 .. 0.82 Alignments for each domain: == domain 1 score: 1.0 bits; conditional E-value: 4.5 1fv5_A 7 ykCseCgk 14 + C +C k sp|P37569|MCSA_BACSU 27 HICEQCAK 34 56666655 PP == domain 2 score: 8.8 bits; conditional E-value: 0.015 1fv5_A 8 kCseCgksFsqk 19 C++Cg+ F+q+ sp|P37569|MCSA_BACSU 80 ACPKCGMTFQQF 91 6*********97 PP == domain 3 score: 9.4 bits; conditional E-value: 0.0098 1fv5_A 6 pykCseCgksFsqkss 21 ++CseC k F+++ sp|P37569|MCSA_BACSU 96 RFGCSECYKTFHSNIT 111 699********98865 PP >> 2lvu_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.4 0.7 0.2 64 4 12 .. 81 89 .. 26 95 .. 0.89 2 ? 5.4 0.0 0.2 63 2 12 .. 97 107 .. 96 154 .. 0.88 Alignments for each domain: == domain 1 score: 5.4 bits; conditional E-value: 0.2 2lvu_A 4 CeqCgktFa 12 C++Cg tF sp|P37569|MCSA_BACSU 81 CPKCGMTFQ 89 999999985 PP == domain 2 score: 5.4 bits; conditional E-value: 0.2 2lvu_A 2 fkCeqCgktFa 12 f C++C ktF sp|P37569|MCSA_BACSU 97 FGCSECYKTFH 107 88*******94 PP >> 2eoz_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.7 1.3 5.1 1.7e+03 9 17 .. 26 34 .. 3 41 .. 0.73 2 ? 7.4 0.3 0.04 13 6 21 .. 75 90 .. 71 95 .. 0.83 3 ? 11.3 0.9 0.0023 0.72 9 34 .. 96 120 .. 92 131 .. 0.81 Alignments for each domain: == domain 1 score: 0.7 bits; conditional E-value: 5.1 2eoz_A 9 pykCsqCgk 17 + C+qC k sp|P37569|MCSA_BACSU 26 VHICEQCAK 34 477999987 PP == domain 2 score: 7.4 bits; conditional E-value: 0.04 2eoz_A 6 gekpykCsqCgktFsr 21 +e+ C+ Cg+tF + sp|P37569|MCSA_BACSU 75 SEQISACPKCGMTFQQ 90 567778********76 PP == domain 3 score: 11.3 bits; conditional E-value: 0.0023 2eoz_A 9 pykCsqCgktFsrkssLtrHmrvHtg 34 ++ Cs+C ktF + + ++vH+g sp|P37569|MCSA_BACSU 96 RFGCSECYKTFHSNITPI-LRKVHSG 120 589********9988776.3467765 PP >> 2co8_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 7.4 0.05 16 5 59 .. 29 104 .. 1 106 [. 0.64 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.05 2co8_A 5 CagCgkpiypgervra...............lgksw.........HpsCFr.CskCgkpLssgdfsfykdgrpyCercyk 59 C C k ++++ ++a +++s+ H++ C kCg +++ k gr+ C++cyk sp|P37569|MCSA_BACSU 29 CEQCAKENSDSYGISAnqgfsihnllsgllnMDSSFqnagtqmfsHSEQISaCPKCGMTFQQF----RKIGRFGCSECYK 104 6666554444444433111111111111111344446666666679999988******99754....369*********7 PP >> 2eps_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.3 0.2 7.3 2.3e+03 8 14 .. 2 8 .. 1 17 [. 0.73 2 ? 4.3 3.6 0.42 1.4e+02 32 43 .. 75 86 .. 20 94 .. 0.50 3 ? 9.9 0.2 0.0072 2.3 6 19 .. 96 109 .. 95 131 .. 0.76 Alignments for each domain: == domain 1 score: 0.3 bits; conditional E-value: 7.3 2eps_A 8 eCeeCgk 14 +C+eC+ sp|P37569|MCSA_BACSU 2 ICQECHE 8 6888874 PP == domain 2 score: 4.3 bits; conditional E-value: 0.42 2eps_A 32 gekpfkCsiCgk 43 +e+ C++Cg+ sp|P37569|MCSA_BACSU 75 SEQISACPKCGM 86 355555666654 PP == domain 3 score: 9.9 bits; conditional E-value: 0.0072 2eps_A 6 pyeCeeCgksFsrk 19 ++ C+eC k+F+++ sp|P37569|MCSA_BACSU 96 RFGCSECYKTFHSN 109 689********865 PP >> 1z2q_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.0 1.0 0.37 1.2e+02 35 63 .. 2 34 .. 1 37 [. 0.63 2 ? 11.1 1.0 0.0023 0.72 7 38 .. 76 109 .. 72 139 .. 0.80 Alignments for each domain: == domain 1 score: 4.0 bits; conditional E-value: 0.37 1z2q_A 35 vCskCssnrvplpar....gsekpvrvCdsCys 63 +C++C ++ + + + g++ +v +C++C + sp|P37569|MCSA_BACSU 2 ICQECHERPATFHFTkvvnGEKIEVHICEQCAK 34 688888875544332111156788999999986 PP == domain 2 score: 11.1 bits; conditional E-value: 0.0023 1z2q_A 7 seassCmgCskkFsltrr..rhhCrlCgrvvCsk 38 +++s+C++C+ F+ +r+ r C C + + s+ sp|P37569|MCSA_BACSU 76 EQISACPKCGMTFQQFRKigRFGCSECYKTFHSN 109 7899**********99866688999998887665 PP >> 2yw8_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 1.0 0.25 79 36 62 .. 2 34 .. 1 37 [. 0.62 2 ? 10.6 1.1 0.003 0.97 8 40 .. 76 110 .. 70 139 .. 0.79 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.25 2yw8_A 36 fCssCsk......nrvplpssekpvrvCdsCys 62 +C++C + ++ +++ + +v +C++C + sp|P37569|MCSA_BACSU 2 ICQECHErpatfhFTKVVNGEKIEVHICEQCAK 34 688888833332112234456789999999975 PP == domain 2 score: 10.6 bits; conditional E-value: 0.003 2yw8_A 8 seatsCmgCqkeFsllrr..rhhCrlCgrvfCssC 40 ++ + C++C+ F+ +r+ r C C + f s+ sp|P37569|MCSA_BACSU 76 EQISACPKCGMTFQQFRKigRFGCSECYKTFHSNI 110 57899*********998766999999999997764 PP >> 2ctu_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 11.0 0.11 36 10 58 .. 73 110 .. 2 174 .. 0.78 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.11 2ctu_A 10 vhtgekpykCskCgkafsskssLkrHqrthtgekpfkCkeCgktfssks 58 +h e+ C+kCg +f++ ++ r f C+eC ktf+s+ sp|P37569|MCSA_BACSU 73 SH-SEQISACPKCGMTFQQFRKIGR----------FGCSECYKTFHSNI 110 33.3666678888888887655554..........88888888888753 PP >> 3t7l_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 1.2 0.034 11 36 63 .. 2 35 .. 1 37 [. 0.67 2 ? 8.4 3.0 0.014 4.5 8 39 .. 76 109 .. 71 132 .. 0.81 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.034 3t7l_A 36 vCskCsskkvklpy......lekpvrvCdsCyee 63 +C++C ++ + ++ + +v++C++C++e sp|P37569|MCSA_BACSU 2 ICQECHERPATFHFtkvvngEKIEVHICEQCAKE 35 799999876655432222225679*******976 PP == domain 2 score: 8.4 bits; conditional E-value: 0.014 3t7l_A 8 seassCmeCskkFsllrr..rhhCrkCgkvvCsk 39 ++ s C +C+ +F+ +r+ r C+ C k + s+ sp|P37569|MCSA_BACSU 76 EQISACPKCGMTFQQFRKigRFGCSECYKTFHSN 109 68899*********99876788888888887665 PP >> 2emg_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.3 4.7 1.6 5.1e+02 11 19 .. 81 89 .. 2 96 .. 0.76 2 ? 8.0 0.8 0.025 8.2 9 34 .. 97 121 .. 93 130 .. 0.79 Alignments for each domain: == domain 1 score: 2.3 bits; conditional E-value: 1.6 2emg_A 11 CteCgksFs 19 C++Cg++F sp|P37569|MCSA_BACSU 81 CPKCGMTFQ 89 777777775 PP == domain 2 score: 8.0 bits; conditional E-value: 0.025 2emg_A 9 ykCteCgksFsrkssLrrHlrtHtge 34 + C+eC k+F ++ + + +H+g+ sp|P37569|MCSA_BACSU 97 FGCSECYKTFHSNITPILRK-VHSGN 121 67********9997776643.67665 PP >> 1x6e_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.8 12.9 2.2 7.2e+02 8 46 .. 80 108 .. 2 170 .. 0.63 Alignments for each domain: == domain 1 score: 1.8 bits; conditional E-value: 2.2 1x6e_A 8 kCpkCgktFtsrssLrrHqrtHtgekpykCpeCgksFsr 46 CpkCg tF + + ++ C+eC k+F++ sp|P37569|MCSA_BACSU 80 ACPKCGMTFQQFRK----------IGRFGCSECYKTFHS 108 23333333322211..........245677777777765 PP >> 1bhi_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.2 0.6 0.69 2.2e+02 7 19 .. 27 39 .. 3 51 .. 0.80 2 ? 2.7 0.1 0.97 3.1e+02 7 16 .. 79 88 .. 68 91 .. 0.83 3 ? 9.5 0.3 0.0071 2.3 6 32 .. 96 121 .. 92 127 .. 0.83 Alignments for each domain: == domain 1 score: 3.2 bits; conditional E-value: 0.69 1bhi_A 7 ykCeeCgktFsrk 19 + Ce+C k s++ sp|P37569|MCSA_BACSU 27 HICEQCAKENSDS 39 88****9977776 PP == domain 2 score: 2.7 bits; conditional E-value: 0.97 1bhi_A 7 ykCeeCgktF 16 C+ Cg tF sp|P37569|MCSA_BACSU 79 SACPKCGMTF 88 57******99 PP == domain 3 score: 9.5 bits; conditional E-value: 0.0071 1bhi_A 6 pykCeeCgktFsrkssLvlHqrvHtge 32 ++ C+eC ktF + + +l ++vH+g+ sp|P37569|MCSA_BACSU 96 RFGCSECYKTFHSNITPIL-RKVHSGN 121 566********99988887.7999886 PP >> 4ujr_c # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.3 0.1 4.5 1.5e+03 51 62 .. 24 35 .. 3 57 .. 0.62 2 ? 9.9 0.7 0.0047 1.5 26 65 .. 69 108 .. 59 127 .. 0.84 Alignments for each domain: == domain 1 score: 0.3 bits; conditional E-value: 4.5 4ujr_c 51 vgiWkckscgkt 62 ++ c++c k sp|P37569|MCSA_BACSU 24 IEVHICEQCAKE 35 344446666544 PP == domain 2 score: 9.9 bits; conditional E-value: 0.0047 4ujr_c 26 kkieisqhakytCpfCgktkvkrqavgiWkckscgktvag 65 +++ ++++ Cp Cg t + ++ g + c++c kt+ + sp|P37569|MCSA_BACSU 69 TQMFSHSEQISACPKCGMTFQQFRKIGRFGCSECYKTFHS 108 566666777889*******9999999***********987 PP >> 2el6_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.0 3.7 0.47 1.5e+02 11 20 .. 80 89 .. 4 93 .. 0.77 2 ? 6.7 1.6 0.07 23 9 22 .. 96 109 .. 92 131 .. 0.75 Alignments for each domain: == domain 1 score: 4.0 bits; conditional E-value: 0.47 2el6_A 11 kCpvCgktFs 20 Cp+Cg+tF sp|P37569|MCSA_BACSU 80 ACPKCGMTFQ 89 4889998886 PP == domain 2 score: 6.7 bits; conditional E-value: 0.07 2el6_A 9 pykCpvCgktFstk 22 ++ C++C ktF ++ sp|P37569|MCSA_BACSU 96 RFGCSECYKTFHSN 109 688********654 PP >> 2em9_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.2 3.8 0.76 2.4e+02 10 18 .. 80 88 .. 2 94 .. 0.85 2 ? 7.8 0.7 0.026 8.5 9 36 .. 97 123 .. 92 129 .. 0.82 Alignments for each domain: == domain 1 score: 3.2 bits; conditional E-value: 0.76 2em9_A 10 kCpeCgktF 18 Cp+Cg tF sp|P37569|MCSA_BACSU 80 ACPKCGMTF 88 499999999 PP == domain 2 score: 7.8 bits; conditional E-value: 0.026 2em9_A 9 ykCpeCgktFsrkssLkrHlrvHtgekp 36 + C+eC ktF ++ + + +vH+g+ + sp|P37569|MCSA_BACSU 97 FGCSECYKTFHSNITPILR-KVHSGNTV 123 56********999988765.77888765 PP >> 2ytt_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.8 0.4 0.03 9.7 9 20 .. 80 91 .. 72 94 .. 0.80 2 ? 8.8 0.1 0.015 4.7 7 22 .. 96 111 .. 95 133 .. 0.73 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.03 2ytt_A 9 kCeeCgktFktk 20 C++Cg+tF + sp|P37569|MCSA_BACSU 80 ACPKCGMTFQQF 91 7********886 PP == domain 2 score: 8.8 bits; conditional E-value: 0.015 2ytt_A 7 pykCeeCgktFktkss 22 ++ C+eC ktF + + sp|P37569|MCSA_BACSU 96 RFGCSECYKTFHSNIT 111 589********55544 PP >> 2ene_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.2 4.0 9.6 3.1e+03 7 15 .. 26 34 .. 2 55 .. 0.81 2 ? 5.2 0.2 0.19 61 9 20 .. 80 91 .. 68 94 .. 0.85 3 ? 9.2 0.1 0.01 3.4 8 22 .. 97 111 .. 95 140 .. 0.80 Alignments for each domain: == domain 1 score: -0.2 bits; conditional E-value: 9.6 2ene_A 7 pyeCseCgk 15 + C++C k sp|P37569|MCSA_BACSU 26 VHICEQCAK 34 688999987 PP == domain 2 score: 5.2 bits; conditional E-value: 0.19 2ene_A 9 eCseCgksFktk 20 C+ Cg++F ++ sp|P37569|MCSA_BACSU 80 ACPKCGMTFQQF 91 5********765 PP == domain 3 score: 9.2 bits; conditional E-value: 0.01 2ene_A 8 yeCseCgksFktkss 22 + CseC k+F ++ + sp|P37569|MCSA_BACSU 97 FGCSECYKTFHSNIT 111 89********88755 PP >> 2lo4_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.0 0.1 1.6 5.2e+02 4 15 .. 22 33 .. 19 38 .. 0.83 2 ? 8.1 0.1 0.0098 3.2 7 16 .. 77 86 .. 70 88 .. 0.79 Alignments for each domain: == domain 1 score: 1.0 bits; conditional E-value: 1.6 2lo4_A 4 enipehsCPKCg 15 e+i h C +C sp|P37569|MCSA_BACSU 22 EKIEVHICEQCA 33 57999****997 PP == domain 2 score: 8.1 bits; conditional E-value: 0.0098 2lo4_A 7 pehsCPKCge 16 ++ +CPKCg sp|P37569|MCSA_BACSU 77 QISACPKCGM 86 6789****96 PP >> 1m1q_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.3 8.7 0.015 4.7 8 72 .. 3 103 .. 1 126 [. 0.58 Alignments for each domain: == domain 1 score: 8.3 bits; conditional E-value: 0.015 1m1q_A 8 CesCHeeke......kklekaeeeevClsCHkkeke...la.....a....................ahssha.geleCteCHkeheek 61 C++CHe+ + ++ e + C +C k++++ ++ + + sh+ + +C +C ++ ++ sp|P37569|MCSA_BACSU 3 CQECHERPAtfhftkVVNGEKIEVHICEQCAKENSDsygISanqgfSihnllsgllnmdssfqnagtQMFSHSeQISACPKCGMTFQQF 91 *****986522211122235678899****99988633311222221222333333333333222221122331456899999887754 PP 1m1q_A 62 .kkskelClsCH 72 k + C++C sp|P37569|MCSA_BACSU 92 rKIGRFGCSECY 103 244566688885 PP >> 2rsi_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.7 5.0 0.0078 2.5 25 73 .. 17 91 .. 1 96 [. 0.52 2 ? 5.4 1.4 0.18 58 33 45 .. 97 109 .. 92 176 .. 0.57 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 0.0078 2rsi_A 25 rthtgekp..ysCpkCgktfssksalrrHi........................rshhgekkyeCpeCgktfssk 73 ++ +gek ++C++C k+ s + +++ + + +h e+ Cp+Cg tf++ sp|P37569|MCSA_BACSU 17 KVVNGEKIevHICEQCAKENSDSYGISANQgfsihnllsgllnmdssfqnagtqMFSHSEQISACPKCGMTFQQF 91 3445555455999999987665544444332222223333333333332222225678888899******99875 PP == domain 2 score: 5.4 bits; conditional E-value: 0.18 2rsi_A 33 ysCpkCgktfssk 45 + C++C ktf+s+ sp|P37569|MCSA_BACSU 97 FGCSECYKTFHSN 109 5566666666553 PP >> 3ouq_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.4 8.7 0.013 4.3 11 120 .. 3 102 .. 1 169 [. 0.59 Alignments for each domain: == domain 1 score: 8.4 bits; conditional E-value: 0.013 3ouq_A 11 CaeCHkekekskkkklklakvekkkkCleCHkkekaksaeeeeecakchkkkek..elelkvkklkeaefshskheekagveCeeCHke 97 C+eCH++ ++ + +k+ ++ + C++C k++++ ++++ + h+ + +++ + +++++++fshs++ +C +C ++ sp|P37569|MCSA_BACSU 3 CQECHERPATFHFTKVVNGEKIEVHICEQCAKENSDSYGISANQGFSIHNLLSGllNMDSSFQNAGTQMFSHSEQI----SACPKCGMT 87 6666665544433444444445555666666666554333344444555443321122223344444445444333....346666554 PP 3ouq_A 98 hkkkkkkklslkkkekeksCleC 120 ++ + k + C eC sp|P37569|MCSA_BACSU 88 FQQFR--------KIGRFGCSEC 102 43322........1122334444 PP >> 1yui_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.5 6.4 0.52 1.7e+02 21 34 .. 77 90 .. 2 96 .. 0.87 2 ? 7.9 1.3 0.022 7.2 23 35 .. 97 109 .. 95 129 .. 0.74 Alignments for each domain: == domain 1 score: 3.5 bits; conditional E-value: 0.52 1yui_A 21 kpykCsqCgktFsr 34 + C++Cg+tF++ sp|P37569|MCSA_BACSU 77 QISACPKCGMTFQQ 90 4468********97 PP == domain 2 score: 7.9 bits; conditional E-value: 0.022 1yui_A 23 ykCsqCgktFsrk 35 + Cs+C ktF+++ sp|P37569|MCSA_BACSU 97 FGCSECYKTFHSN 109 89********864 PP >> 2eov_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 0.1 0.22 72 9 17 .. 26 34 .. 7 58 .. 0.76 2 ? 4.0 6.5 0.47 1.5e+02 10 34 .. 97 120 .. 70 129 .. 0.62 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.22 2eov_A 9 pykCsqCgk 17 + C+qC k sp|P37569|MCSA_BACSU 26 VHICEQCAK 34 699****98 PP == domain 2 score: 4.0 bits; conditional E-value: 0.47 2eov_A 10 ykCsqCgksFsrkssLr.rHmrvHtg 34 + Cs+C k+F + + + ++vH+g sp|P37569|MCSA_BACSU 97 FGCSECYKTFHS--NITpILRKVHSG 120 567777777743..332333455655 PP >> 1wjp_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.0 13.2 0.96 3.1e+02 29 76 .. 73 109 .. 1 174 [. 0.51 Alignments for each domain: == domain 1 score: 3.0 bits; conditional E-value: 0.96 1wjp_A 29 thsgekpfkCsiCgksfssrsllkrHrrshtgekpfkCpeCgksfssk 76 +hs e+ C++Cg +f++ +++ +f C+eC k+f+s+ sp|P37569|MCSA_BACSU 73 SHS-EQISACPKCGMTFQQ---FRKI-------GRFGCSECYKTFHSN 109 333.233444444444444...1111.......234444444444442 PP >> 2i13_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 11.0 0.029 9.3 61 154 .. 3 108 .. 1 178 [. 0.62 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.029 2i13_A 61 CpiCgksfksksslkrHlrthhgekpfkCevCgksfksksslkrHl..kth......................tgekpykCplCgksfs 125 C++C+++ ++ + +++ + + ++ + + Ce+C k+ +++ + + ++h ++e+ Cp+Cg +f+ sp|P37569|MCSA_BACSU 3 CQECHERPATFH-FTKVV-NGEKIEVHICEQCAKENSDSYGISANQgfSIHnllsgllnmdssfqnagtqmfsHSEQISACPKCGMTFQ 89 444444443322.22222.2233446777777777666665555431111122222222222222222222225667777888888776 PP 2i13_A 126 skselkrHlrthtgekpfkCelCgktfks 154 + ++ +f C++C ktf s sp|P37569|MCSA_BACSU 90 QFRKI----------GRFGCSECYKTFHS 108 54433..........45777777777765 PP >> 2lv2_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.0 7.7 0.046 15 5 46 .. 27 92 .. 2 96 .. 0.59 2 ? 5.7 1.7 0.12 38 32 44 .. 96 108 .. 92 118 .. 0.79 Alignments for each domain: == domain 1 score: 7.0 bits; conditional E-value: 0.046 2lv2_A 5 ykCpeCgktFssksnL......qrH..................qrthhgekpfsCpkCgksFssks 46 ++C++C k s +++ H q+++h e+ CpkCg +F++++ sp|P37569|MCSA_BACSU 27 HICEQCAKENSDSYGIsanqgfSIHnllsgllnmdssfqnagtQMFSHSEQISACPKCGMTFQQFR 92 5677776643322221111111222222222222222222233678899*************9976 PP == domain 2 score: 5.7 bits; conditional E-value: 0.12 2lv2_A 32 pfsCpkCgksFss 44 +f C++C k+F+s sp|P37569|MCSA_BACSU 96 RFGCSECYKTFHS 108 4778888888876 PP >> 2em4_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.5 5.3 1.3 4.3e+02 11 22 .. 81 92 .. 2 96 .. 0.89 2 ? 8.6 1.3 0.016 5.1 8 33 .. 96 120 .. 92 139 .. 0.80 Alignments for each domain: == domain 1 score: 2.5 bits; conditional E-value: 1.3 2em4_A 11 CpvCgktfstqs 22 Cp+Cg+tf ++ sp|P37569|MCSA_BACSU 81 CPKCGMTFQQFR 92 9******98876 PP == domain 2 score: 8.6 bits; conditional E-value: 0.016 2em4_A 8 pykCpvCgktfstqssLkrHqrsHtg 33 ++ C++C+ktf + + +++H+g sp|P37569|MCSA_BACSU 96 RFGCSECYKTFHSNITP-ILRKVHSG 120 599********765444.46667776 PP >> 2m9a_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.0 14.1 3.9 1.3e+03 25 66 .. 27 90 .. 1 170 [. 0.63 Alignments for each domain: == domain 1 score: 1.0 bits; conditional E-value: 3.9 2m9a_A 25 ykCpeCgksfstksslkr.........................HlrshhgekpypfkCkeCgkafss 66 + C++C k+ s+++ + + sh+++ +C++Cg++f++ sp|P37569|MCSA_BACSU 27 HICEQCAKENSDSYGISAnqgfsihnllsgllnmdssfqnagtQMFSHSEQI---SACPKCGMTFQQ 90 6677776666555554431111111111111111111111111233444332...345555555443 PP >> 2ytm_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.3 0.2 1.3 4.3e+02 8 16 .. 26 34 .. 8 55 .. 0.84 2 ? 8.3 0.4 0.019 6 7 21 .. 77 91 .. 72 94 .. 0.77 3 ? 8.9 1.0 0.012 3.8 8 34 .. 96 121 .. 92 130 .. 0.80 Alignments for each domain: == domain 1 score: 2.3 bits; conditional E-value: 1.3 2ytm_A 8 pyeCpeCgk 16 + C++C k sp|P37569|MCSA_BACSU 26 VHICEQCAK 34 699****88 PP == domain 2 score: 8.3 bits; conditional E-value: 0.019 2ytm_A 7 kpyeCpeCgktFsrk 21 + Cp Cg+tF + sp|P37569|MCSA_BACSU 77 QISACPKCGMTFQQF 91 5556********875 PP == domain 3 score: 8.9 bits; conditional E-value: 0.012 2ytm_A 8 pyeCpeCgktFsrkssLkrHqrtHtge 34 ++ C+eC ktF + + + ++H+g sp|P37569|MCSA_BACSU 96 RFGCSECYKTFHSNITPILR-KVHSGN 121 799********888887754.667775 PP >> 4lk9_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.0 6.3 0.022 7.2 4 91 .. 3 120 .. 1 125 [. 0.52 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.022 4lk9_A 4 csvClsee............keelvscdkCpssyhq.................sclklsselekavkkkewsceeckvCevCgkkge.. 61 c+ C+++ k e+ c++C ++ l+++s+ ++a ++ + e+ + C Cg++ + sp|P37569|MCSA_BACSU 3 CQECHERPatfhftkvvngeKIEVHICEQCAKENSDsygisanqgfsihnllsGLLNMDSSFQNAGTQMFSHSEQISACPKCGMTFQqf 91 66666655666666666554446666777766644422222222222221221222233333322222223335666888888864411 PP 4lk9_A 62 dedklllCdkCdrayhteClkpplkevpeg 91 ++ + C++C + +h + p l++v +g sp|P37569|MCSA_BACSU 92 RKIGRFGCSECYKTFHSNIT-PILRKVHSG 120 4444588*********9987.677777766 PP >> 2dmi_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.1 12.6 0.47 1.5e+02 8 86 .. 72 108 .. 1 178 [. 0.56 Alignments for each domain: == domain 1 score: 4.1 bits; conditional E-value: 0.47 2dmi_A 8 thtgekpfkCplCgksfsskssLkrHlrthgekecrkpfkCpvCgksfsasksslkrHlrthtgekpfkCsvCgkafks 86 +++ ++ Cp+Cg +f+ + + +f Cs+C k+f s sp|P37569|MCSA_BACSU 72 FSHS-------------------------------EQISACPKCGMTFQ-Q----------FRKIGRFGCSECYKTFHS 108 1122...............................23344555555553.1..........122234555555555554 PP >> 2jp9_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 11.3 0.11 34 29 98 .. 25 108 .. 1 172 [. 0.67 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.11 2jp9_A 29 kpfkCekCgksfksksslkrHk..rsh......................tgekpfkCpkCgksfssksalkrHlrthtgekpykCpeCg 93 + + Ce+C k+ +++ ++ + +h + e+ CpkCg +f++ ++ ++ C+eC sp|P37569|MCSA_BACSU 25 EVHICEQCAKENSDSYGISANQgfSIHnllsgllnmdssfqnagtqmfsHSEQISACPKCGMTFQQFRK----------IGRFGCSECY 103 457888888876555544433311111222222222222222233333356888899999999998654..........3468888898 PP 2jp9_A 94 ksfss 98 k+f+s sp|P37569|MCSA_BACSU 104 KTFHS 108 88887 PP >> 1x6f_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.6 4.5 1.2 4e+02 16 28 .. 78 90 .. 2 94 .. 0.59 2 ? 9.8 0.8 0.0072 2.3 16 43 .. 96 122 .. 92 174 .. 0.50 Alignments for each domain: == domain 1 score: 2.6 bits; conditional E-value: 1.2 1x6f_A 16 pykCeeCgktFkt 28 +C++Cg tF + sp|P37569|MCSA_BACSU 78 ISACPKCGMTFQQ 90 2345555555544 PP == domain 2 score: 9.8 bits; conditional E-value: 0.0072 1x6f_A 16 pykCeeCgktFktksnLnrHlrvHtgek 43 ++ C+eC ktF+++ ++vH+g+ sp|P37569|MCSA_BACSU 96 RFGCSECYKTFHSN-ITPILRKVHSGNT 122 599********884.2333444666642 PP >> 4r2a_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.8 9.3 0.27 88 32 75 .. 26 93 .. 2 124 .. 0.46 2 ? 4.2 1.4 0.41 1.3e+02 61 72 .. 97 108 .. 95 176 .. 0.75 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.27 4r2a_A 32 pykCpeCgktfsskssLkrHlrsh........................tgekpykCdvCgksfkrkss 75 + C++C k s + + + + ++e+ C++Cg +f++++ sp|P37569|MCSA_BACSU 26 VHICEQCAKENSDSYGISANQGFSihnllsgllnmdssfqnagtqmfsHSEQISACPKCGMTFQQFRK 93 36777777766665555543321111222222222222222222222233444444444444443322 PP == domain 2 score: 4.2 bits; conditional E-value: 0.41 4r2a_A 61 ykCdvCgksfkr 72 + C++C k+f++ sp|P37569|MCSA_BACSU 97 FGCSECYKTFHS 108 455555555554 PP >> 2ytf_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.1 6.3 8.8 2.8e+03 11 18 .. 81 88 .. 2 94 .. 0.76 2 ? 7.4 0.2 0.043 14 9 32 .. 97 119 .. 95 129 .. 0.71 Alignments for each domain: == domain 1 score: 0.1 bits; conditional E-value: 8.8 2ytf_A 11 CpeCgktF 18 Cp+Cg tF sp|P37569|MCSA_BACSU 81 CPKCGMTF 88 88888877 PP == domain 2 score: 7.4 bits; conditional E-value: 0.043 2ytf_A 9 ykCpeCgktFssksalkrHqrvHt 32 + C+eC ktF s + +vH+ sp|P37569|MCSA_BACSU 97 FGCSECYKTFHSNITPIL-RKVHS 119 78********87654443.24555 PP >> 2dlq_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 12.1 0.19 62 29 101 .. 25 108 .. 1 178 [. 0.64 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.19 2dlq_A 29 kpfkCpkCgksfssksslkrH.....................lrrhhshtgekpykCevCgksfksksalkrHlrthtgekpfkCpeCg 96 + + C++C k s++ ++ ++ ++e+ C++Cg +f++ +++ +f C+eC sp|P37569|MCSA_BACSU 25 EVHICEQCAKENSDSYGISANqgfsihnllsgllnmdssfqnAGTQMFSHSEQISACPKCGMTFQQFRKI----------GRFGCSECY 103 4467777777666665555541111112222222211111111122234567788888888888887765..........457788888 PP 2dlq_A 97 ksfss 101 k+f+s sp|P37569|MCSA_BACSU 104 KTFHS 108 88776 PP >> 2mdg_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.1 7.0 0.36 1.2e+02 2 41 .. 27 90 .. 2 96 .. 0.63 2 ? 6.6 5.8 0.061 20 4 41 .. 81 108 .. 78 169 .. 0.83 Alignments for each domain: == domain 1 score: 4.1 bits; conditional E-value: 0.36 2mdg_A 2 fkCpeCgk............sFrskssLrrHrrthtg............ekpykCpvCgktFss 41 ++C++C k F++ + L+ + + e Cp+Cg tF++ sp|P37569|MCSA_BACSU 27 HICEQCAKensdsygisanqGFSIHNLLSGLLNMDSSfqnagtqmfshsEQISACPKCGMTFQQ 90 5688885444333333333366664444444333222333333333333788889999999987 PP == domain 2 score: 6.6 bits; conditional E-value: 0.061 2mdg_A 4 CpeCgksFrskssLrrHrrthtgekpykCpvCgktFss 41 Cp Cg++F++ + r + C++C ktF s sp|P37569|MCSA_BACSU 81 CPKCGMTFQQFRKIGR----------FGCSECYKTFHS 108 9999999988555444..........888888888866 PP >> 2ytq_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.1 2.2 3.1 1e+03 8 16 .. 26 34 .. 2 43 .. 0.71 2 ? 8.8 0.2 0.012 3.9 6 22 .. 76 92 .. 49 94 .. 0.85 3 ? 7.3 2.0 0.037 12 8 23 .. 96 111 .. 93 129 .. 0.74 Alignments for each domain: == domain 1 score: 1.1 bits; conditional E-value: 3.1 2ytq_A 8 pykCpeCgk 16 + C++C k sp|P37569|MCSA_BACSU 26 VHICEQCAK 34 388999988 PP == domain 2 score: 8.8 bits; conditional E-value: 0.012 2ytq_A 6 ekpykCpeCgksFsrks 22 e Cp+Cg++F + + sp|P37569|MCSA_BACSU 76 EQISACPKCGMTFQQFR 92 55568********8865 PP == domain 3 score: 7.3 bits; conditional E-value: 0.037 2ytq_A 8 pykCpeCgksFsrkss 23 + C+eC k+F ++ + sp|P37569|MCSA_BACSU 96 RFGCSECYKTFHSNIT 111 589********87655 PP >> 4qiw_P # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.1 0.1 5.5 1.8e+03 6 11 .. 3 8 .. 1 20 [. 0.73 2 ? 9.2 2.0 0.0065 2.1 5 32 .. 28 88 .. 24 94 .. 0.53 3 ? 2.2 0.3 1 3.3e+02 6 14 .. 99 107 .. 90 117 .. 0.81 Alignments for each domain: == domain 1 score: -0.1 bits; conditional E-value: 5.5 4qiw_P 6 CpsCGk 11 C +C++ sp|P37569|MCSA_BACSU 3 CQECHE 8 666664 PP == domain 2 score: 9.2 bits; conditional E-value: 0.0065 4qiw_P 5 rCpsCGkefele..ls................e.......gpeir...........CPeCGskl 32 +C++C ke +++ +s + g + CP+CG ++ sp|P37569|MCSA_BACSU 28 ICEQCAKENSDSygISanqgfsihnllsgllnMdssfqnaG---TqmfshseqisaCPKCGMTF 88 59999999988766544344444444434333122222220...022222333345*****776 PP == domain 3 score: 2.2 bits; conditional E-value: 1 4qiw_P 6 CpsCGkefe 14 C++C k+f+ sp|P37569|MCSA_BACSU 99 CSECYKTFH 107 889999886 PP >> 2j7j_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.2 13.6 4.2 1.3e+03 20 67 .. 71 106 .. 1 173 [. 0.60 Alignments for each domain: == domain 1 score: 1.2 bits; conditional E-value: 4.2 2j7j_A 20 qrthsgekpfkCpeCgkrFssksslkrHlrthsgeekpfkCkecgktf 67 + +h +e Cp+Cg +F++ +++ r f C+ec ktf sp|P37569|MCSA_BACSU 71 MFSH-SEQISACPKCGMTFQQFRKIGR-----------FGCSECYKTF 106 2222.2333344444444444222222...........3455555555 PP >> 1x6h_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 4.9 0.065 21 10 51 .. 26 90 .. 2 96 .. 0.62 2 ? 3.4 6.8 0.7 2.3e+02 9 51 .. 77 108 .. 70 169 .. 0.77 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.065 1x6h_A 10 pykCpvC............gksfsrksnLkrHlr............thhgekkpykCpeCgksfst 51 ++C++C ++ fs ++ L l+ h+e+ +Cp+Cg +f++ sp|P37569|MCSA_BACSU 26 VHICEQCakensdsygisaNQGFSIHNLLSGLLNmdssfqnagtqmFSHSEQ-ISACPKCGMTFQQ 90 5889999555555555555557777776665543222222222222345565.789*****99986 PP == domain 2 score: 3.4 bits; conditional E-value: 0.7 1x6h_A 9 kpykCpvCgksfsrksnLkrHlrthhgekkpykCpeCgksfst 51 + Cp+Cg +f++ + + C+eC k+f++ sp|P37569|MCSA_BACSU 77 QISACPKCGMTFQQFRKI----------G-RFGCSECYKTFHS 108 445566666666554332..........2.4667777777765 PP >> 2lt7_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.2 13.2 1.6 5.3e+02 5 71 .. 27 107 .. 1 173 [. 0.60 Alignments for each domain: == domain 1 score: 2.2 bits; conditional E-value: 1.6 2lt7_A 5 fkCplCgksfksksslkrHlr..kh......................sgekpykCpeCgktfssksslkrHlrthhgekpfkCpeCgkt 69 ++C++C k+ ++++ + + + +h ++e+ Cp+Cg tf++ ++ +f C+eC kt sp|P37569|MCSA_BACSU 27 HICEQCAKENSDSYGISANQGfsIHnllsgllnmdssfqnagtqmfsHSEQISACPKCGMTFQQFRKIG----------RFGCSECYKT 105 456666555444443322221112222222222222222222222223456666666666666443322..........3455555555 PP 2lt7_A 70 fs 71 f sp|P37569|MCSA_BACSU 106 FH 107 54 PP >> 2eq4_A [No individual domains that satisfy reporting thresholds (although complete target did)] >> 2kmk_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.9 13.2 1 3.3e+02 3 68 .. 29 108 .. 2 170 .. 0.68 Alignments for each domain: == domain 1 score: 2.9 bits; conditional E-value: 1 2kmk_A 3 CpeCgksfssksslkrH.........................lrshtgekpykCpeCgksfssrsalkrHlrthtgekpykCreCgksf 66 C++C k+ s++ + sh e+ Cp+Cg +f++ + ++ C+eC k+f sp|P37569|MCSA_BACSU 29 CEQCAKENSDSYGISANqgfsihnllsgllnmdssfqnagtqMFSH-SEQISACPKCGMTFQQFRKI----------GRFGCSECYKTF 106 5666554444443322211111111111111111111111113333.46667788888888774333..........457888888888 PP 2kmk_A 67 ss 68 +s sp|P37569|MCSA_BACSU 107 HS 108 76 PP >> 2epx_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.4 3.1 6.9 2.2e+03 6 14 .. 26 34 .. 2 42 .. 0.80 2 ? 8.8 0.3 0.016 5.1 4 20 .. 76 92 .. 73 94 .. 0.82 3 ? 5.2 0.1 0.22 70 7 19 .. 97 109 .. 95 131 .. 0.79 Alignments for each domain: == domain 1 score: 0.4 bits; conditional E-value: 6.9 2epx_A 6 pykCsvCgk 14 ++C++C k sp|P37569|MCSA_BACSU 26 VHICEQCAK 34 489999987 PP == domain 2 score: 8.8 bits; conditional E-value: 0.016 2epx_A 4 ekpykCsvCgksFsrks 20 e+ + C++Cg++F + + sp|P37569|MCSA_BACSU 76 EQISACPKCGMTFQQFR 92 66778********9876 PP == domain 3 score: 5.2 bits; conditional E-value: 0.22 2epx_A 7 ykCsvCgksFsrk 19 + Cs+C k+F ++ sp|P37569|MCSA_BACSU 97 FGCSECYKTFHSN 109 66********876 PP >> 2emx_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.5 0.9 1.5 4.8e+02 8 16 .. 26 34 .. 6 55 .. 0.77 2 ? 7.0 0.5 0.058 19 9 20 .. 79 90 .. 62 96 .. 0.84 3 ? 8.9 1.2 0.014 4.6 8 26 .. 96 114 .. 92 140 .. 0.77 Alignments for each domain: == domain 1 score: 2.5 bits; conditional E-value: 1.5 2emx_A 8 pykCseCgk 16 + C++C k sp|P37569|MCSA_BACSU 26 VHICEQCAK 34 599****87 PP == domain 2 score: 7.0 bits; conditional E-value: 0.058 2emx_A 9 ykCseCgksFsr 20 C++Cg++F + sp|P37569|MCSA_BACSU 79 SACPKCGMTFQQ 90 57********76 PP == domain 3 score: 8.9 bits; conditional E-value: 0.014 2emx_A 8 pykCseCgksFsrkssLrr 26 ++ CseC k+F ++ + + sp|P37569|MCSA_BACSU 96 RFGCSECYKTFHSNITPIL 114 589********88866443 PP >> 3cao_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 8.3 0.047 15 19 82 .. 3 102 .. 1 104 [. 0.50 2 ? 2.4 0.8 1.1 3.5e+02 8 48 .. 75 105 .. 67 125 .. 0.55 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.047 3cao_A 19 CaaCHhkeee...gklkakeeeeeesCseCHeekek......kd..............kkklkkal.........h....ekCigchkk 71 C++CH++ + +k+++ e+ e C++C +e+++ ++ +++ + h ++C +c + sp|P37569|MCSA_BACSU 3 CQECHERPATfhfTKVVNGEKIEVHICEQCAKENSDsygisaNQgfsihnllsgllnmDSS----FqnagtqmfsHseqiSACPKCGMT 87 ******99764345666678888999****9997642222220022222222222222112....122222222222223467777666 PP 3cao_A 72 ek....kgpvtCakC 82 + g+ C++C sp|P37569|MCSA_BACSU 88 FQqfrkIGRFGCSEC 102 432222678889998 PP == domain 2 score: 2.4 bits; conditional E-value: 1.1 3cao_A 8 kkhaekakledCaaCHhkeeegklkakeeeeeesCseCHee 48 ++ ++++C +C + ++ + CseC ++ sp|P37569|MCSA_BACSU 75 SE-----QISACPKCGMTFQQ--F---RKIGRFGCSECYKT 105 33.....23456666554432..1...22334456666655 PP >> 1x3c_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.8 14.4 0.27 86 2 52 .. 81 120 .. 2 157 .. 0.92 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.27 1x3c_A 2 CkeCgkaFkrksslkrHirthtgekpykCeeCgktFsrksnLrrHqrvHtg 52 C++Cg++F++ ++ ++ C+eC ktF++ + ++vH+g sp|P37569|MCSA_BACSU 81 CPKCGMTFQQFRK----------IGRFGCSECYKTFHSNITPIL-RKVHSG 120 **********998..........568**********99877654.355554 PP >> 2ema_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.6 2.3 6.3 2e+03 9 17 .. 26 34 .. 2 77 .. 0.76 2 ? 6.3 0.7 0.1 32 11 22 .. 80 91 .. 68 94 .. 0.82 3 ? 6.9 0.1 0.065 21 10 22 .. 97 109 .. 95 132 .. 0.75 Alignments for each domain: == domain 1 score: 0.6 bits; conditional E-value: 6.3 2ema_A 9 pykCpeCgk 17 ++ C++C k sp|P37569|MCSA_BACSU 26 VHICEQCAK 34 477888877 PP == domain 2 score: 6.3 bits; conditional E-value: 0.1 2ema_A 11 kCpeCgkafsrs 22 Cp Cg++f+++ sp|P37569|MCSA_BACSU 80 ACPKCGMTFQQF 91 6********987 PP == domain 3 score: 6.9 bits; conditional E-value: 0.065 2ema_A 10 ykCpeCgkafsrs 22 + C+eC k+f + sp|P37569|MCSA_BACSU 97 FGCSECYKTFHSN 109 78********554 PP >> 2epr_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.2 0.5 7.5 2.4e+03 6 12 .. 2 8 .. 1 23 [. 0.83 2 ? 2.2 0.3 1.7 5.4e+02 4 12 .. 26 34 .. 22 51 .. 0.89 3 ? 4.3 0.1 0.38 1.2e+02 7 15 .. 81 89 .. 70 94 .. 0.89 4 ? 8.3 0.1 0.021 6.8 4 20 .. 96 112 .. 95 143 .. 0.76 Alignments for each domain: == domain 1 score: 0.2 bits; conditional E-value: 7.5 2epr_A 6 kCpeCgk 12 C+eC++ sp|P37569|MCSA_BACSU 2 ICQECHE 8 5999997 PP == domain 2 score: 2.2 bits; conditional E-value: 1.7 2epr_A 4 pykCpeCgk 12 ++ C++C k sp|P37569|MCSA_BACSU 26 VHICEQCAK 34 699****88 PP == domain 3 score: 4.3 bits; conditional E-value: 0.38 2epr_A 7 CpeCgktfs 15 Cp Cg tf sp|P37569|MCSA_BACSU 81 CPKCGMTFQ 89 *******95 PP == domain 4 score: 8.3 bits; conditional E-value: 0.021 2epr_A 4 pykCpeCgktfstkshL 20 ++ C+eC ktf + + sp|P37569|MCSA_BACSU 96 RFGCSECYKTFHSNITP 112 578********554444 PP >> 2ct1_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 7.5 0.07 23 8 50 .. 26 90 .. 1 93 [. 0.59 2 ? 6.6 7.5 0.071 23 7 51 .. 77 109 .. 74 165 .. 0.84 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.07 2ct1_A 8 pykCeiCgktfstr......................ssLr...rHirthhterekpfkCseCgktFst 50 ++Ce+C k s++ ss++ +++ +h e+ C++Cg+tF++ sp|P37569|MCSA_BACSU 26 VHICEQCAKENSDSygisanqgfsihnllsgllnmdSSFQnagTQM-FSHS--EQISACPKCGMTFQQ 90 5999999987777634444433333333333322222222222222.2343..57899********86 PP == domain 2 score: 6.6 bits; conditional E-value: 0.071 2ct1_A 7 kpykCeiCgktfstrssLrrHirthhterekpfkCseCgktFstk 51 + +C++Cg tf + +r + +f CseC ktF++ sp|P37569|MCSA_BACSU 77 QISACPKCGMTFQQ-------FR--K---IGRFGCSECYKTFHSN 109 5568********77.......44..3...446**********985 PP >> 3w5k_B # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 12.1 0.18 57 29 120 .. 3 108 .. 1 169 [. 0.68 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.18 3w5k_B 29 CkvCgksfksksalkrHlrthtkpfkCeiCgkafssksslkrHlr..th......................tgekpfkCpkCgkafssk 93 C++C+++ ++ + k + + + Ce+C k+ s+++ + h + e+ CpkCg +f++ sp|P37569|MCSA_BACSU 3 CQECHERPATFHFTKVVNGEKIEVHICEQCAKENSDSYGISANQGfsIHnllsgllnmdssfqnagtqmfsHSEQISACPKCGMTFQQ- 90 5556555555544444333344678899999988777765555431112222233333333333333333356777889999999865. PP 3w5k_B 94 sslkrHlrthtgekpykCeeCgksfsr 120 r + ++ C+eC k+f++ sp|P37569|MCSA_BACSU 91 ------FR---KIGRFGCSECYKTFHS 108 ......23...2346888888888876 PP >> 2ysp_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.8 5.3 2.1 6.8e+02 10 20 .. 80 90 .. 2 96 .. 0.79 2 ? 6.8 1.3 0.059 19 8 22 .. 96 110 .. 92 129 .. 0.77 Alignments for each domain: == domain 1 score: 1.8 bits; conditional E-value: 2.1 2ysp_A 10 kCpvCgkaFss 20 Cp Cg +F++ sp|P37569|MCSA_BACSU 80 ACPKCGMTFQQ 90 58888888875 PP == domain 2 score: 6.8 bits; conditional E-value: 0.059 2ysp_A 8 pykCpvCgkaFssks 22 ++ C++C k+F s+ sp|P37569|MCSA_BACSU 96 RFGCSECYKTFHSNI 110 689********7764 PP >> 4r2q_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.3 11.3 1.7 5.3e+02 32 75 .. 26 93 .. 1 110 [. 0.44 2 ? 4.4 4.4 0.37 1.2e+02 7 45 .. 81 109 .. 81 176 .. 0.68 Alignments for each domain: == domain 1 score: 2.3 bits; conditional E-value: 1.7 4r2q_A 32 pykCeeCgksfssk.........................sslrrHmrthtgekpfkCekCgksfsrkss 75 + Ce+C k s++ ++ ++m +h +e+ C+kCg +f++ + sp|P37569|MCSA_BACSU 26 VHICEQCAKENSDSygisanqgfsihnllsgllnmdssfQNAGTQMFSH-SEQISACPKCGMTFQQFRK 93 4667777776554411111111111111111111111111222234444.4555666666666665443 PP == domain 2 score: 4.4 bits; conditional E-value: 0.37 4r2q_A 7 CpeCgksfksksslrrHmrthtgekpykCeeCgksfssk 45 Cp+Cg++f++ +++ ++ C+eC k+f+s+ sp|P37569|MCSA_BACSU 81 CPKCGMTFQQFRKI----------GRFGCSECYKTFHSN 109 66777777654333..........247777777777764 PP >> 2rsj_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 6.4 0.1 34 30 71 .. 26 92 .. 1 96 [. 0.43 2 ? 2.9 9.7 1 3.3e+02 25 69 .. 73 108 .. 29 174 .. 0.71 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.1 2rsj_A 30 pykCpkCgksfssk......selkrHlr...................thhgekfkCpvCgksfssks 71 + C++C k+ s++ + + H +h+++ Cp+Cg++f++ + sp|P37569|MCSA_BACSU 26 VHICEQCAKENSDSygisanQGFSIHNLlsgllnmdssfqnagtqmfSHSEQISACPKCGMTFQQFR 92 3567777555433311111122222221111111111111111111156666688999999998765 PP == domain 2 score: 2.9 bits; conditional E-value: 1 2rsj_A 25 htgekpykCpkCgksfsskselkrHlrthhgekfkCpvCgksfss 69 ++e+ CpkCg +f++ +++ r f C++C k+f+s sp|P37569|MCSA_BACSU 73 SHSEQISACPKCGMTFQQFRKIGR---------FGCSECYKTFHS 108 245666778888877777555544.........677777777766 PP >> 2yt9_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.0 12.7 2.1 6.9e+02 3 71 .. 27 108 .. 1 172 [. 0.65 Alignments for each domain: == domain 1 score: 2.0 bits; conditional E-value: 2.1 2yt9_A 3 fkCeeCgksftsksslrrHmrth........................sgekpykCseCgksfssksalkrHlrthhgeekpykCpeCgk 67 + Ce+C k ++++ + + ++e+ C++Cg +f++ ++ ++ C+eC k sp|P37569|MCSA_BACSU 27 HICEQCAKENSDSYGISANQGFSihnllsgllnmdssfqnagtqmfsHSEQISACPKCGMTFQQFRKI-----------GRFGCSECYK 104 45666666666655555554321113333333333333333333333556666677777766653222...........4466666666 PP 2yt9_A 68 sfss 71 +f s sp|P37569|MCSA_BACSU 105 TFHS 108 6654 PP >> 2enc_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.0 0.1 0.45 1.4e+02 7 21 .. 22 38 .. 7 44 .. 0.75 2 ? 3.4 6.6 0.69 2.2e+02 12 24 .. 81 93 .. 72 125 .. 0.73 Alignments for each domain: == domain 1 score: 4.0 bits; conditional E-value: 0.45 2enc_A 7 ek..pykCpiCgktFsr 21 ek + C++C k s+ sp|P37569|MCSA_BACSU 22 EKieVHICEQCAKENSD 38 444469*****997665 PP == domain 2 score: 3.4 bits; conditional E-value: 0.69 2enc_A 12 CpiCgktFsrkss 24 Cp+Cg+tF+++ + sp|P37569|MCSA_BACSU 81 CPKCGMTFQQFRK 93 9999999998765 PP >> 3wwl_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.2 1.2 0.47 1.5e+02 1 25 [. 1 32 [. 1 33 [. 0.69 2 ? 5.3 0.3 0.1 33 21 31 .. 80 90 .. 70 102 .. 0.82 Alignments for each domain: == domain 1 score: 3.2 bits; conditional E-value: 0.47 3wwl_A 1 vkCPeCgg...tvlvpDeasG...el.vCsnC 25 ++C eC + t+ + ++G e+ +C+ C sp|P37569|MCSA_BACSU 1 MICQECHErpaTFHFTKVVNGekiEVhICEQC 32 6899**99765555555566655688888877 PP == domain 2 score: 5.3 bits; conditional E-value: 0.1 3wwl_A 21 vCsnCGlvlee 31 C++CG ++ + sp|P37569|MCSA_BACSU 80 ACPKCGMTFQQ 90 69999988866 PP >> 2i5o_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.1 0.2 4.7 1.5e+03 4 10 .. 2 8 .. 1 11 [. 0.83 2 ? 0.5 0.1 3.5 1.1e+03 4 11 .. 28 35 .. 26 38 .. 0.85 3 ? 6.2 0.1 0.059 19 4 13 .. 80 89 .. 77 91 .. 0.88 4 ? 3.8 0.0 0.34 1.1e+02 5 14 .. 99 108 .. 96 120 .. 0.77 Alignments for each domain: == domain 1 score: 0.1 bits; conditional E-value: 4.7 2i5o_A 4 tCprCgk 10 C +C+ sp|P37569|MCSA_BACSU 2 ICQECHE 8 5****96 PP == domain 2 score: 0.5 bits; conditional E-value: 3.5 2i5o_A 4 tCprCgkt 11 C++C k+ sp|P37569|MCSA_BACSU 28 ICEQCAKE 35 5****986 PP == domain 3 score: 6.2 bits; conditional E-value: 0.059 2i5o_A 4 tCprCgktvp 13 Cp+Cg t++ sp|P37569|MCSA_BACSU 80 ACPKCGMTFQ 89 6*****9997 PP == domain 4 score: 3.8 bits; conditional E-value: 0.34 2i5o_A 5 CprCgktvpv 14 C++C kt++ sp|P37569|MCSA_BACSU 99 CSECYKTFHS 108 ******9975 PP >> 2gqj_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.0 12.7 3.3 1.1e+03 15 53 .. 80 108 .. 2 157 .. 0.65 Alignments for each domain: == domain 1 score: 1.0 bits; conditional E-value: 3.3 2gqj_A 15 rCpeCgkafrskssLkrHrrshtgekpfkCpvCgktFsr 53 Cp+Cg +f + + + +f C++C ktF++ sp|P37569|MCSA_BACSU 80 ACPKCGMTFQQFR----------KIGRFGCSECYKTFHS 108 3444444444331..........1245777777777765 PP >> 1f2i_G [No individual domains that satisfy reporting thresholds (although complete target did)] >> 1vfy_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.6 1.1 0.53 1.7e+02 31 59 .. 2 34 .. 1 35 [. 0.62 2 ? 8.8 3.0 0.013 4 6 36 .. 79 111 .. 72 144 .. 0.78 Alignments for each domain: == domain 1 score: 3.6 bits; conditional E-value: 0.53 1vfy_A 31 fCsscsskriplp....alggeepvRvCdsCye 59 +C++c ++ ++ g++ +v +C++C + sp|P37569|MCSA_BACSU 2 ICQECHERPATFHftkvVNGEKIEVHICEQCAK 34 688888765544311113467889999999975 PP == domain 2 score: 8.8 bits; conditional E-value: 0.013 1vfy_A 6 dsCpkCgkkFsllrr..rhhCrlCGrvfCsscs 36 ++CpkCg+ F+ +r+ r C C + f s+ + sp|P37569|MCSA_BACSU 79 SACPKCGMTFQQFRKigRFGCSECYKTFHSNIT 111 68**********986669999999998887755 PP >> 2lce_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.1 13.6 6.4 2.1e+03 23 46 .. 71 93 .. 2 170 .. 0.65 Alignments for each domain: == domain 1 score: 0.1 bits; conditional E-value: 6.4 2lce_A 23 lrsHtgekpyeCeeCgksFsrksa 46 + sH+++ + C++Cg +F + + sp|P37569|MCSA_BACSU 71 MFSHSEQIS-ACPKCGMTFQQFRK 93 455665543.55555555555433 PP >> 1vd4_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.0 3.8 7.2 2.3e+03 35 44 .. 27 36 .. 1 51 [. 0.64 2 ? 12.7 6.0 0.00081 0.26 11 45 .. 80 107 .. 71 121 .. 0.86 Alignments for each domain: == domain 1 score: 0.0 bits; conditional E-value: 7.2 1vd4_A 35 fkCpeCGkaf 44 ++C++C k+ sp|P37569|MCSA_BACSU 27 HICEQCAKEN 36 5677777765 PP == domain 2 score: 12.7 bits; conditional E-value: 0.00081 1vd4_A 11 kCpeCGktFtrss.vhlrthtgerpfkCpeCGkafe 45 Cp+CG tF + + + + f C+eC k+f sp|P37569|MCSA_BACSU 80 ACPKCGMTFQQFRkI--------GRFGCSECYKTFH 107 6********888745........88*********95 PP >> 2yth_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.9 1.2 0.97 3.1e+02 7 18 .. 21 34 .. 6 44 .. 0.76 2 ? 4.0 0.3 0.42 1.4e+02 12 23 .. 80 91 .. 70 94 .. 0.82 3 ? 9.6 1.2 0.0077 2.5 10 34 .. 96 119 .. 92 131 .. 0.76 Alignments for each domain: == domain 1 score: 2.9 bits; conditional E-value: 0.97 2yth_A 7 gek..pykCeeCgk 18 gek + Ce+C k sp|P37569|MCSA_BACSU 21 GEKieVHICEQCAK 34 55533699****98 PP == domain 2 score: 4.0 bits; conditional E-value: 0.42 2yth_A 12 kCeeCgksFsss 23 C++Cg +F ++ sp|P37569|MCSA_BACSU 80 ACPKCGMTFQQF 91 5********875 PP == domain 3 score: 9.6 bits; conditional E-value: 0.0077 2yth_A 10 pykCeeCgksFsssssLkkHkrtHt 34 ++ C+eC k+F s+ + ++H+ sp|P37569|MCSA_BACSU 96 RFGCSECYKTFHSNITPILR-KVHS 119 689********999765554.4444 PP >> 2ma7_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.8 1.3 4.6 1.5e+03 31 39 .. 27 35 .. 2 52 .. 0.66 2 ? 3.6 9.4 0.59 1.9e+02 25 43 .. 73 91 .. 25 129 .. 0.58 3 ? 4.5 1.5 0.31 99 31 42 .. 97 108 .. 95 157 .. 0.76 Alignments for each domain: == domain 1 score: 0.8 bits; conditional E-value: 4.6 2ma7_A 31 fkCdeCgkt 39 + C++C k sp|P37569|MCSA_BACSU 27 HICEQCAKE 35 667777664 PP == domain 2 score: 3.6 bits; conditional E-value: 0.59 2ma7_A 25 htgekpfkCdeCgktFssk 43 +++e+ C++Cg+tF+++ sp|P37569|MCSA_BACSU 73 SHSEQISACPKCGMTFQQF 91 4556777888888888875 PP == domain 3 score: 4.5 bits; conditional E-value: 0.31 2ma7_A 31 fkCdeCgktFss 42 f C eC ktF+s sp|P37569|MCSA_BACSU 97 FGCSECYKTFHS 108 455555555543 PP >> 2csh_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.2 12.8 1.8 5.7e+02 4 43 .. 79 108 .. 1 169 [. 0.65 Alignments for each domain: == domain 1 score: 2.2 bits; conditional E-value: 1.8 2csh_A 4 ykCpeCgksfsskselrrHmrthhgekpykCaeCgksfks 43 +Cp+Cg +f++ +++ ++ C+eC k+f+s sp|P37569|MCSA_BACSU 79 SACPKCGMTFQQFRKI----------GRFGCSECYKTFHS 108 2344444444443222..........22555555555544 PP >> 2ytk_A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.6 5.4 1.2 3.7e+02 11 21 .. 80 90 .. 4 94 .. 0.81 2 ? 6.0 2.0 0.097 31 10 22 .. 97 109 .. 93 129 .. 0.76 Alignments for each domain: == domain 1 score: 2.6 bits; conditional E-value: 1.2 2ytk_A 11 kCpeCgksFsr 21 Cp+Cg++F + sp|P37569|MCSA_BACSU 80 ACPKCGMTFQQ 90 49999999876 PP == domain 2 score: 6.0 bits; conditional E-value: 0.097 2ytk_A 10 ykCpeCgksFsrk 22 + C+eC k+F ++ sp|P37569|MCSA_BACSU 97 FGCSECYKTFHSN 109 89********876 PP >> 3zms_C # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.6 11.8 0.42 1.4e+02 72 147 .. 22 107 .. 1 109 [. 0.36 Alignments for each domain: == domain 1 score: 3.6 bits; conditional E-value: 0.42 3zms_C 72 sgekpykCdiCgksfsskselkrHlrthhqekk.......................kekpykCevCgksfasksslkrHlrthhgekpf 137 ++ + + C++C k+ s+++ + + +e+ C+ Cg++f++ +++ +f sp|P37569|MCSA_BACSU 22 EKIEVHICEQCAKENSDSYGISANQGFSI---HnllsgllnmdssfqnagtqmfshSEQISACPKCGMTFQQFRKI----------GRF 97 22333445555444444443333321111...01122233333333333333444434444555555555443333..........235 PP 3zms_C 138 kCevCgksfs 147 C++C k+f+ sp|P37569|MCSA_BACSU 98 GCSECYKTFH 107 5555555554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (185 residues searched) Target model(s): 34759 (6694603 nodes) Passed MSV filter: 2246 (0.0646164); expected 695.2 (0.02) Passed bias filter: 1365 (0.0392704); expected 695.2 (0.02) Passed Vit filter: 346 (0.00995426); expected 34.8 (0.001) Passed Fwd filter: 242 (0.00696223); expected 0.3 (1e-05) Initial search space (Z): 34759 [actual number of targets] Domain search space (domZ): 108 [number of targets reported over threshold] # CPU time: 2.68u 1.60s 00:00:04.28 Elapsed: 00:00:01.53 # Mc/sec: 809.48 // [ok]