test_GenBank Testing parsers... ***Record from noref.gb with the FeatureParser Seq: Seq('GGCAAGATGGCGCCGGTGGGGGTGGAGAAGAAGCTGCTGCTAGGTCCCAACGGG...AAA', IUPACAmbiguousDNA()) Id: NM_006141.1 Name: NM_006141 Description Homo sapiens dynein, cytoplasmic, light intermediate polypeptide 2 (DNCLI2), mRNA. Annotations*** Key: accessions Value: ['NM_006141'] Key: comment Value: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF035812.1. Key: data_file_division Value: PRI Key: date Value: 01-NOV-2000 Key: gi Value: 5453633 Key: keywords Value: [''] Key: organism Value: Homo sapiens Key: sequence_version Value: 1 Key: source Value: human Key: taxonomy Value: ['Eukaryota', 'Metazoa', 'Chordata', 'Craniata', 'Vertebrata', 'Euteleostomi', 'Mammalia', 'Eutheria', 'Primates', 'Catarrhini', 'Hominidae', 'Homo'] Features type: source location: [0:1622](+) qualifiers: Key: db_xref, Value: ['taxon:9606'] Key: map, Value: ['16'] Key: organism, Value: ['Homo sapiens'] type: gene location: [0:1622](+) qualifiers: Key: db_xref, Value: ['LocusID:1783'] Key: gene, Value: ['DNCLI2'] Key: note, Value: ['LIC2'] type: CDS location: [6:1485](+) qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['LocusID:1783', 'GI:5453634'] Key: gene, Value: ['DNCLI2'] Key: note, Value: ['similar to R. norvegicus and G. gallus dynein light intermediate chain 2, Swiss-Prot Accession Numbers Q62698 and Q90828, respectively'] Key: product, Value: ['dynein, cytoplasmic, light intermediate polypeptide 2'] Key: protein_id, Value: ['NP_006132.1'] Key: translation, Value: ['MAPVGVEKKLLLGPNGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVFGEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYHKGLLKFAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEKMRELERKFVKDFQDYMEPEEGCQGSPQRRGPLTSGSDEENVALPLGDNVLTHNLGIPVLVVCTKCDAVSVLEKEHDYRDEHLDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPALVVEKDAVFIPAGWDNEKKIAILHENFTTVKPEDAYEDFIVKPPVRKLVHDKELAAEDEQVFLMKQQSLLAKQPATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSPGSPGAGGVQSTAKKSGQKTVLSNVQEELDRMTRKPDSMVTNSSTENEA'] DB cross refs [] ***Record from cor6_6.gb with the FeatureParser Seq: Seq('AACAAAACACACATCAAAAACGATTTTACAAGAAAAAAATATCTGAAAAATGTC...AAA', IUPACAmbiguousDNA()) Id: X55053.1 Name: ATCOR66M Description A.thaliana cor6.6 mRNA. Annotations*** Key: accessions Value: ['X55053'] Key: comment Value: Cor6.6 homologous to KIN1. KIN1 is a cold-regulated Arabidopsis gene with suggested similarity to type I fish antifreeze proteins. Key: data_file_division Value: PLN Key: date Value: 02-MAR-1992 Key: gi Value: 16229 Key: keywords Value: ['antifreeze protein homology', 'cold-regulated gene', 'cor6.6 gene', 'KIN1 homology'] Key: organism Value: Arabidopsis thaliana References* location: [0:513] authors: Thomashow,M.F. title: Direct Submission journal: Submitted (01-FEB-1991) M.F. Thomashow, Dept. Crop and Soil Sciences, Dept. Microbiology, Michigan State University, East Lansing, Michigan 48824, USA medline id: pubmed id: comment: location: [0:513] authors: Gilmour,S.J., Artus,N.N. and Thomashow,M.F. title: cDNA sequence analysis and expression of two cold-regulated genes of Arabidopsis thaliana journal: Plant Mol. Biol. 18 (1), 13-21 (1992) medline id: 92119220 pubmed id: comment: Key: sequence_version Value: 1 Key: source Value: thale cress Key: taxonomy Value: ['Eukaryota', 'Viridiplantae', 'Streptophyta', 'Embryophyta', 'Tracheophyta', 'euphyllophytes', 'Spermatophyta', 'Magnoliophyta', 'eudicotyledons', 'Rosidae', 'Capparales', 'Brassicaceae', 'Arabidopsis'] Features type: source location: [0:513](+) qualifiers: Key: db_xref, Value: ['taxon:3702'] Key: organism, Value: ['Arabidopsis thaliana'] Key: strain, Value: ['Columbia'] type: gene location: [49:250](+) qualifiers: Key: gene, Value: ['cor6.6'] type: CDS location: [49:250](+) qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:16230', 'SWISS-PROT:P31169'] Key: gene, Value: ['cor6.6'] Key: note, Value: ['cold regulated'] Key: protein_id, Value: ['CAA38894.1'] Key: translation, Value: ['MSETNKNAFQAGQAAGKAEEKSNVLLDKAKDAAAAAGASAQQAGKSISDAAVGGVNFVKDKTGLNK'] DB cross refs [] ***Record from cor6_6.gb with the FeatureParser Seq: Seq('ATTTGGCCTATAAATATAAACCCTTAAGCCCACATATCTTCTCAATCCATCACA...ATA', IUPACAmbiguousDNA()) Id: X62281.1 Name: ATKIN2 Description A.thaliana kin2 gene. Annotations*** Key: accessions Value: ['X62281'] Key: data_file_division Value: PLN Key: date Value: 23-JUL-1992 Key: gi Value: 16353 Key: keywords Value: ['kin2 gene'] Key: organism Value: Arabidopsis thaliana References* location: [0:880] authors: Borg-Franck,M.E. title: Direct Submission journal: Submitted (27-SEP-1991) M.E. Borg-Franck, Inst of Biotechnology, University of Helsinki, Karvaamokuja 3, SF-00380 Helsinki, FINLAND medline id: pubmed id: comment: location: [0:880] authors: Kurkela,S. and Borg-Franck,M. title: Structure and expression of kin2, one of two cold- and ABA-induced genes of Arabidopsis thaliana journal: Plant Mol. Biol. 19 (4), 689-692 (1992) medline id: 92329728 pubmed id: comment: Key: sequence_version Value: 1 Key: source Value: thale cress Key: taxonomy Value: ['Eukaryota', 'Viridiplantae', 'Streptophyta', 'Embryophyta', 'Tracheophyta', 'euphyllophytes', 'Spermatophyta', 'Magnoliophyta', 'eudicotyledons', 'Rosidae', 'Capparales', 'Brassicaceae', 'Arabidopsis'] Features type: source location: [0:880](+) qualifiers: Key: db_xref, Value: ['taxon:3702'] Key: organism, Value: ['Arabidopsis thaliana'] Key: strain, Value: ['ssp. L. Heynh, Colombia'] type: TATA_signal location: [8:20](+) qualifiers: type: exon location: [43:160](+) qualifiers: Key: gene, Value: ['kin2'] Key: number, Value: ['1'] type: prim_transcript location: [43:>579](+) qualifiers: Key: gene, Value: ['kin2'] type: mRNA location: join{[43:160](+), [319:390](+), [503:>579](+)} qualifiers: Key: gene, Value: ['kin2'] type: gene location: [43:579](+) qualifiers: Key: gene, Value: ['kin2'] type: CDS location: join{[103:160](+), [319:390](+), [503:579](+)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:16354', 'SWISS-PROT:P31169'] Key: gene, Value: ['kin2'] Key: protein_id, Value: ['CAA44171.1'] Key: translation, Value: ['MSETNKNAFQAGQAAGKAERRRAMFCWTRPRMLLLQLELPRNRAGKSISDAAVGGVNFVKDKTGLNK'] type: intron location: [160:319](+) qualifiers: Key: gene, Value: ['kin2'] Key: number, Value: ['1'] type: exon location: [319:390](+) qualifiers: Key: gene, Value: ['kin2'] Key: number, Value: ['2'] type: intron location: [390:503](+) qualifiers: Key: gene, Value: ['kin2'] Key: number, Value: ['2'] type: exon location: [503:>579](+) qualifiers: Key: gene, Value: ['kin2'] Key: number, Value: ['3'] type: polyA_signal location: [619:625](+) qualifiers: type: polyA_signal location: [640:646](+) qualifiers: type: polyA_site location: [784:785](+) qualifiers: type: polyA_site location: [799:800](+) qualifiers: DB cross refs [] ***Record from cor6_6.gb with the FeatureParser Seq: Seq('AAAAAAACACAACAAAACTCAATAAATAAACAAATGGCAGACAACAAGCAGAGC...TTC', IUPACAmbiguousDNA()) Id: M81224.1 Name: BNAKINI Description Rapeseed Kin1 protein (kin1) mRNA, complete cds. Annotations*** Key: accessions Value: ['M81224'] Key: data_file_division Value: PLN Key: date Value: 27-APR-1993 Key: gi Value: 167145 Key: keywords Value: [''] Key: organism Value: Brassica napus References* location: [0:441] authors: Orr,W., Iu,B., White,T., Robert,L.S. and Singh,J. title: Nucleotide sequence of a winter B. napus Kin 1 cDNA journal: Plant Physiol. 98, 1532-1534 (1992) medline id: pubmed id: comment: Key: sequence_version Value: 1 Key: source Value: Brassica napus (cultivar Jet neuf) cold induced leaf cDNA to mRNA Key: taxonomy Value: ['Eukaryota', 'Viridiplantae', 'Embryophyta', 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'eudicotyledons', 'core eudicots', 'Rosidae', 'eurosids II', 'Brassicales', 'Brassicaceae', 'Brassica'] Features type: source location: [0:441](+) qualifiers: Key: cultivar, Value: ['Jet neuf'] Key: db_xref, Value: ['taxon:3708'] Key: dev_stage, Value: ['cold induced'] Key: organism, Value: ['Brassica napus'] Key: tissue_type, Value: ['leaf'] type: gene location: [33:300](+) qualifiers: Key: gene, Value: ['kin1'] type: CDS location: [33:231](+) qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:167146'] Key: evidence, Value: ['experimental'] Key: gene, Value: ['kin1'] Key: protein_id, Value: ['AAA32993.1'] Key: translation, Value: ['MADNKQSFQAGQASGRAEEKGNVLMDKVKDAATAAGASAQTAGQKITEAAGGAVNLVKEKTGMNK'] type: polyA_signal location: [240:247](+) qualifiers: Key: gene, Value: ['kin1'] Key: note, Value: ['putative'] type: polyA_signal location: [293:300](+) qualifiers: Key: gene, Value: ['kin1'] Key: note, Value: ['putative'] type: polyA_site location: [440:441](+) qualifiers: Key: gene, Value: ['kin1'] DB cross refs [] ***Record from cor6_6.gb with the FeatureParser Seq: Seq('GGACAAGGCCAAGGATGCTGCTGCTGCAGCTGGAGCTTCCGCGCAACAAGTAAA...GGC', IUPACAmbiguousDNA()) Id: AJ237582.1 Name: ARU237582 Description Armoracia rusticana csp14 gene (partial), exons 2-3. Annotations*** Key: accessions Value: ['AJ237582'] Key: data_file_division Value: PLN Key: date Value: 24-MAR-1999 Key: gi Value: 4538892 Key: keywords Value: ['cold shock protein', 'csp14 gene'] Key: organism Value: Armoracia rusticana References* location: [0:206] authors: Baymiev,A.K., Gimalov,F.R. and Vakhitov,V.A. title: journal: Unpublished medline id: pubmed id: comment: location: [0:206] authors: Baymiev,A.K. title: Direct Submission journal: Submitted (20-MAR-1999) Baymiev A.K., Departament of Biochemistry and Cytochemistry, Ufa Scientific Centre, pr. Oktyabrya 69, Ufa, Bashkortostan, Russia, 450054, RUSSIA medline id: pubmed id: comment: Key: sequence_version Value: 1 Key: source Value: horseradish Key: taxonomy Value: ['Eukaryota', 'Viridiplantae', 'Streptophyta', 'Embryophyta', 'Tracheophyta', 'euphyllophytes', 'Spermatophyta', 'Magnoliophyta', 'eudicotyledons', 'Rosidae', 'Capparales', 'Brassicaceae', 'Armoracia'] Features type: source location: [0:206](+) qualifiers: Key: country, Value: ['Russia:Bashkortostan'] Key: db_xref, Value: ['taxon:3704'] Key: organism, Value: ['Armoracia rusticana'] type: mRNA location: join{[<0:48](+), [142:>206](+)} qualifiers: Key: gene, Value: ['csp14'] type: exon location: [0:48](+) qualifiers: Key: gene, Value: ['csp14'] Key: number, Value: ['2'] type: gene location: [0:206](+) qualifiers: Key: gene, Value: ['csp14'] type: CDS location: join{[<0:48](+), [142:>206](+)} qualifiers: Key: codon_start, Value: ['2'] Key: db_xref, Value: ['GI:4538893'] Key: gene, Value: ['csp14'] Key: product, Value: ['cold shock protein'] Key: protein_id, Value: ['CAB39890.1'] Key: translation, Value: ['DKAKDAAAAAGASAQQAGKNISDAAAGGVNFVKEKTG'] type: intron location: [48:142](+) qualifiers: Key: gene, Value: ['csp14'] Key: number, Value: ['2'] type: exon location: [142:206](+) qualifiers: Key: gene, Value: ['csp14'] Key: number, Value: ['3'] DB cross refs [] ***Record from cor6_6.gb with the FeatureParser Seq: Seq('AACAAAACTCAATAAATAAACAAATGGCAGACAACAAGCAGAGCTTCCAAGCCG...TTT', IUPACAmbiguousDNA()) Id: L31939.1 Name: BRRBIF72 Description Brassica rapa (clone bif72) kin mRNA, complete cds. Annotations*** Key: accessions Value: ['L31939'] Key: data_file_division Value: PLN Key: date Value: 01-MAR-1996 Key: gi Value: 1209261 Key: keywords Value: [''] Key: organism Value: Brassica rapa References* location: [0:282] authors: Kim,J.-B., Kim,H.-U., Park,B.-S., Yun,C.-H., Cho,W.-S., Ryu,J.-C. and Chung,T.-Y. title: Nucleotide sequences of kin gene in chinese cabbage journal: Unpublished (1994) medline id: pubmed id: comment: Key: sequence_version Value: 1 Key: source Value: Brassica rapa flower cDNA to mRNA Key: taxonomy Value: ['Eukaryota', 'Viridiplantae', 'Embryophyta', 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'eudicotyledons', 'core eudicots', 'Rosidae', 'eurosids II', 'Brassicales', 'Brassicaceae', 'Brassica'] Features type: source location: [0:282](+) qualifiers: Key: db_xref, Value: ['taxon:3711'] Key: dev_stage, Value: ['flower'] Key: organism, Value: ['Brassica rapa'] type: gene location: [23:221](+) qualifiers: Key: gene, Value: ['kin'] type: CDS location: [23:221](+) qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:1209262'] Key: gene, Value: ['kin'] Key: protein_id, Value: ['AAA91051.1'] Key: translation, Value: ['MADNKQSFQAGQAAGRAEEKGNVLLMDKVKDAATAAGALQTAGQKITEAAGGAVNLVKEKTGMNK'] DB cross refs [] ***Record from cor6_6.gb with the FeatureParser Seq: Seq('ATGGCAGACAACAAGCAGAGCTTCCAAGCCGGTCAAGCCGCTGGTCGTGCTGAG...TAG', IUPACAmbiguousDNA()) Id: AF297471.1 Name: AF297471 Description Brassica napus BN28a (BN28a) gene, complete cds. Annotations*** Key: accessions Value: ['AF297471'] Key: data_file_division Value: PLN Key: date Value: 14-SEP-2000 Key: gi Value: 10121868 Key: keywords Value: [''] Key: organism Value: Brassica napus References* location: [0:497] authors: Byass,L.J. and Flanagan,A.M. title: BN28a, a low temperature-induced gene of Brassica napus journal: Unpublished medline id: pubmed id: comment: location: [0:497] authors: Byass,L.J. and Flanagan,A.M. title: Direct Submission journal: Submitted (18-AUG-2000) AFNS, University of Alberta, 4-10 Agriculture/Forestry Centre, Edmonton, Alberta T6G 2P5, Canada medline id: pubmed id: comment: Key: sequence_version Value: 1 Key: source Value: rape Key: taxonomy Value: ['Eukaryota', 'Viridiplantae', 'Embryophyta', 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'eudicotyledons', 'core eudicots', 'Rosidae', 'eurosids II', 'Brassicales', 'Brassicaceae', 'Brassica'] Features type: source location: [0:497](+) qualifiers: Key: cultivar, Value: ['Cascade'] Key: db_xref, Value: ['taxon:3708'] Key: organism, Value: ['Brassica napus'] type: mRNA location: join{[<0:54](+), [240:309](+), [422:>497](+)} qualifiers: Key: gene, Value: ['BN28a'] Key: product, Value: ['BN28a'] type: gene location: [<0:>497](+) qualifiers: Key: gene, Value: ['BN28a'] type: CDS location: join{[0:54](+), [240:309](+), [422:497](+)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:10121869'] Key: gene, Value: ['BN28a'] Key: note, Value: ['low temperature-induced; similar to Brassica napus Kin1 in Accession Number M81224'] Key: product, Value: ['BN28a'] Key: protein_id, Value: ['AAG13407.1'] Key: translation, Value: ['MADNKQSFQAGQAAGRAEEKGNVLMDKVKDAATAAGASAQTAGQKITEAAGGAVNLVKEKTGMNK'] DB cross refs [] ***Record from iro.gb with the FeatureParser Seq: Seq('CACAGGCCCAGAGCCACTCCTGCCTACAGGTTCTGAGGGCTCAGGGGACCTCCT...AAA', IUPACAmbiguousDNA()) Id: AL109817.1 Name: IRO125195 Description Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 125195. Annotations*** Key: accessions Value: ['AL109817'] Key: comment Value: EURO-IMAGE Consortium Contact: Auffray C CNRS UPR 420 - Genetique Moleculaire et Biologie du Developement IFR 1221 - Rue Guy Moquet 19, Batiment G - BP 8 94801 Villejuif Cedex, FRANCE Tel: ++33-1-49 58 34 98 Fax: ++33-1-49 58 35 09 e-mail: auffray@infobiogen.fr This clone is available royalty-free through IMAGE Consortium Distributors. IMPORTANT: This sequence represents the full insert of this IMAGE cDNA clone. No attempt has been made to verify whether this corresponds to the full-length of the original mRNA from which it was derived. Key: data_file_division Value: PRI Key: date Value: 11-AUG-1999 Key: gi Value: 5731880 Key: keywords Value: ['FLI_CDNA'] Key: organism Value: Homo sapiens References* location: [0:1326] authors: Auffray,C., Ansorge,W., Ballabio,A., Estivill,X., Gibson,K., Lehrach,H., Poustka,A. and Lundeberg,J. title: The European IMAGE consortium for integrated Molecular analysis of human gene transcripts journal: Unpublished medline id: pubmed id: comment: location: [0:1326] authors: Carim,L., Estivill,X., Sumoy,L. and Escarceller,M. title: Direct Submission journal: Submitted (11-AUG-1999) Dept. Genetica Molecular, Institut de Recerca Oncologica (IRO), Hospital Duran i Reynals, Autovia de Castelldefels Km 2,7 L'Hospitalet de Llobregat, 08907 Barcelona, Catalunya, SPAIN. Tel: ++34-93-260-7775 Fax: ++34-93-260-7776 WWW site: http://www.iro.es e-mail enquiries: lsumoy@iro.es, mescarceller@iro.es medline id: pubmed id: comment: Key: sequence_version Value: 1 Key: source Value: human Key: taxonomy Value: ['Eukaryota', 'Metazoa', 'Chordata', 'Craniata', 'Vertebrata', 'Mammalia', 'Eutheria', 'Primates', 'Catarrhini', 'Hominidae', 'Homo'] Features type: source location: [0:1326](+) qualifiers: Key: chromosome, Value: ['21'] Key: clone, Value: ['IMAGE cDNA clone 125195'] Key: clone_lib, Value: ['Soares fetal liver spleen 1NFLS'] Key: db_xref, Value: ['taxon:9606'] Key: note, Value: ['contains Alu repeat; likely to be be derived from unprocessed nuclear RNA or genomic DNA; encodes putative exons identical to FTCD; formimino transferase cyclodeaminase; formimino transferase (EC 2.1.2.5) /formimino tetrahydro folate cyclodeaminase (EC 4.3.1.4)'] Key: organism, Value: ['Homo sapiens'] type: gene location: [340:756](+) qualifiers: Key: gene, Value: ['FTCD'] type: exon location: [340:384](+) qualifiers: Key: gene, Value: ['FTCD'] Key: number, Value: ['1'] type: intron location: [384:617](+) qualifiers: Key: gene, Value: ['FTCD'] Key: number, Value: ['1'] type: exon location: [617:756](+) qualifiers: Key: gene, Value: ['FTCD'] Key: number, Value: ['2'] DB cross refs [] ***Record from pri1.gb with the FeatureParser Seq: Seq('GATCATGCATGCACTCCAGCCTGGGACAAGAGCGAAACTCCGTCTCAAAAAAAA...GCA', IUPACAmbiguousDNA()) Id: U05344.1 Name: HUGLUT1 Description Human fructose transporter (GLUT5) gene, promoter and exon 1. Annotations*** Key: accessions Value: ['U05344'] Key: data_file_division Value: PRI Key: date Value: 16-NOV-1994 Key: gi Value: 452475 Key: keywords Value: [''] Key: organism Value: Homo sapiens References* location: [0:741] authors: Mahraoui,L., Takeda,J., Mesonero,J., Chantret,I., Dussaulx,E., Bell,G.I. and Brot-Laroche,E. title: Regulation of expression of the human fructose transporter (GLUT5) by cyclic AMP journal: Biochem. J. 301 (Pt 1), 169-175 (1994) medline id: 94311827 pubmed id: comment: location: [0:741] authors: Takeda,J. title: Direct Submission journal: Submitted (24-JAN-1994) Jun Takeda, Howard Hughes Medical Institute, The University of Chicago, 5841 S. Maryland Ave., Chicago, IL 60637, USA medline id: pubmed id: comment: Key: sequence_version Value: 1 Key: source Value: human Key: taxonomy Value: ['Eukaryota', 'Metazoa', 'Chordata', 'Craniata', 'Vertebrata', 'Euteleostomi', 'Mammalia', 'Eutheria', 'Primates', 'Catarrhini', 'Hominidae', 'Homo'] Features type: source location: [0:741](+) qualifiers: Key: chromosome, Value: ['1'] Key: clone, Value: ['lambda hGT5-157'] Key: clone_lib, Value: ['partial Hae III/Alu I fetal human liver library in lambda Ch4A of Maniatis'] Key: db_xref, Value: ['taxon:9606'] Key: dev_stage, Value: ['fetal'] Key: map, Value: ['1p31'] Key: organism, Value: ['Homo sapiens'] Key: tissue_type, Value: ['liver'] type: repeat_region location: [0:73](+) qualifiers: Key: rpt_family, Value: ['Alu'] type: promoter location: [0:513](+) qualifiers: type: 5'UTR location: [513:609](+) qualifiers: Key: gene, Value: ['GLUT5'] type: exon location: [513:642](+) qualifiers: Key: gene, Value: ['GLUT5'] Key: number, Value: ['1'] Key: product, Value: ['fructose transporter'] DB cross refs [] ***Record from arab1.gb with the FeatureParser Seq: Seq('AAGCTTTGCTACGATCTACATTTGGGAATGTGAGTCTCTTATTGTAACCTTAGG...CTT', IUPACAmbiguousDNA()) Id: AC007323.5 Name: AC007323 Description Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I, complete sequence. Annotations*** Key: accessions Value: ['AC007323'] Key: comment Value: On Dec 16, 1999 this sequence version replaced gi:5729683. Key: data_file_division Value: PLN Key: date Value: 19-JAN-2000 Key: gi Value: 6587720 Key: keywords Value: ['HTG'] Key: organism Value: Arabidopsis thaliana References* location: [0:86436] authors: Dunn,P., Shinn,P., Brooks,S., Buehler,E., Chao,Q., Johnson-Hopson,C., Khan,S., Kim,C., Altafi,H., Bei,Q., Chin,C., Chiou,J., Choi,E., Conn,L., Conway,A., Gonzales,A., Hansen,N., Howing,B., Koo,T., Lam,B., Lee,J., Lenz,C., Li,J., Liu,A., Liu,K., Liu,S., Mukharsky,N., Nguyen,M., Palm,C., Pham,P., Sakano,H., Schwartz,J., Southwick,A., Thaveri,A., Toriumi,M., Vaysberg,M., Yu,G., Federspiel,N.A., Theologis,A. and Ecker,J.R. title: Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I journal: Unpublished medline id: pubmed id: comment: location: [0:86436] authors: Ecker,J.R. title: Direct Submission journal: Submitted (17-APR-1999) Arabidopsis thaliana Genome Center, Department of Biology, University of Pennsylvania, 38th Street and Hamilton Walk, Philadelphia, Pennsylvania 19104-6018, USA medline id: pubmed id: comment: location: [0:86436] authors: Ecker,J.R. title: Direct Submission journal: Submitted (11-AUG-1999) Arabidopsis thaliana Genome Center, Department of Biology, University of Pennsylvania, 38th Street and Hamilton Walk, Philadelphia, Pennsylvania 19104-6018, USA medline id: pubmed id: comment: location: [0:86436] authors: Ecker,J.R. title: Direct Submission journal: Submitted (16-DEC-1999) Arabidopsis thaliana Genome Center, Department of Biology, University of Pennsylvania, 38th Street and Hamilton Walk, Philadelphia, Pennsylvania 19104-6018, USA medline id: pubmed id: comment: location: [0:86436] authors: Chao,Q., Brooks,S., Buehler,E., Johnson-Hopson,C., Khan,S., Kim,C., Shinn,P., Altafi,H., Bei,B., Chin,C., Chiou,J., Choi,E., Conn,L., Conway,A., Gonzalez,A., Hansen,N., Howing,B., Koo,T., Lam,B., Lee,J., Lenz,C., Li,J., Liu,A., Liu,J., Liu,S., Mukharsky,N., Nguyen,M., Palm,C., Pham,P., Sakano,H., Schwartz,J., Southwick,A., Thaveri,A., Toriumi,M., Vaysberg,M., Yu,G., Davis,R., Federspiel,N., Theologis,A. and Ecker,J. title: Direct Submission journal: Submitted (19-JAN-2000) Arabidopsis thaliana Genome Center, Department of Biology, University of Pennsylvania, 38th and Hamilton Walk, Philadelphia, PA 19104-6018, USA medline id: pubmed id: comment: Key: sequence_version Value: 5 Key: source Value: thale cress Key: taxonomy Value: ['Eukaryota', 'Viridiplantae', 'Embryophyta', 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'eudicotyledons', 'core eudicots', 'Rosidae', 'eurosids II', 'Brassicales', 'Brassicaceae', 'Arabidopsis'] Features type: source location: [0:86436](+) qualifiers: Key: chromosome, Value: ['1'] Key: clone, Value: ['T25K16'] Key: db_xref, Value: ['taxon:3702'] Key: organism, Value: ['Arabidopsis thaliana'] type: CDS location: join{[3461:3615](+), [3697:3978](+), [4076:4307](+), [4407:4797](+), [4875:5028](+), [5140:5332](+)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6715633'] Key: evidence, Value: ['not_experimental'] Key: note, Value: ['containing similarity to NAM-like proteins gi|3695378'] Key: product, Value: ['T25K16.1'] Key: protein_id, Value: ['AAF26460.1'] Key: translation, Value: ['MEDQVGFGFRPNDEELVGHYLRNKIEGNTSRDVEVAISEVNICSYDPWNLRFQSKYKSRDAMWYFFSRRENNKGNRQSRTTVSGKWKLTGESVEVKDQWGFCSEGFRGKIGHKRVLVFLDGRYPDKTKSDWVIHEFHYDLLPEHQKLCNVTLFRFSSYFRLSLLSPMFYTDELMCLPPEILQRTYVICRLEYKGDDADILSAYAIDPTPAFVPNMTSSAGSVVNQSRQRNSGSYNTYSEYDSANHGQQFNENSNIMQQQPLQGSFNPLLEYDFANHGGQWLSDYIDLQQQVPYLAPYENESEMIWKHVIEENFEFLVDERTSMQQHYSDHRPKKPVSGVLPDDSSDTETGSMIFEDTSSSTDSVGSSDEPGHTRIDDIPSLNIIEPLHNYKAQEQPKQQSKEKVISSQKSECEWKMAEDSIKIPPSTNTVKQSWIVLENAQWNYLKNMIIGVLLFISVISWIILVG'] type: CDS location: join{[8272:8368](-), [8086:8166](-), [7915:7998](-), [7463:7603](-), [7265:7351](-), [6616:6953](-)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6715650'] Key: evidence, Value: ['not_experimental'] Key: note, Value: ['hypothetical protein'] Key: product, Value: ['T25K16.2'] Key: protein_id, Value: ['AAF26477.1'] Key: translation, Value: ['MAASEHRCVGCGFRVKSLFIQYSPGNIRLMKCGNCKEVADEYIECERMVCFNHFLSLFGPKVYRHVLYNAINPATVNIQVKNYFNSTSRCVVGEIHRQTYLKSPELIIDRSLLLRKSDEESSFSDSPVLLSIKVLIGVLSANAAFIISFAIATKGLLNEVSRESLLLQVWEFPMSVIFFVDILLLTSNSMALKGQTFKMFSMQIVFCCCYFGISQCKFVFKPVMTESTMTRCIAVCLIAHLIRFLVGQIFEPTIFLIQIGSLLQYMSYFFRIV'] type: CDS location: [11565:12642](-) qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6715649'] Key: evidence, Value: ['not_experimental'] Key: note, Value: ['putative RAP2.8 protein gi|3695373'] Key: product, Value: ['T25K16.3'] Key: protein_id, Value: ['AAF26476.1'] Key: translation, Value: ['MDLSLAPTTTTSSDQEQDRDQELTSNIGASSSSGPSGNNNNLPMMMIPPPEKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGIGDESERSKLYIDWRHRPDMSLVQAHQFGNFGFNFNFPTTSQYSNRFHPLPEYNSVPIHRGLNIGNHQRSYYNTQRQEFVGYGYGNLAGRCYYTGSPLDHRNIVGSEPLVIDSVPVVPGRLTPVMLPPLPPPPSTAGKRLRLFGVNMECGNDYNQQEESWLVPRGEIGASSSSSSALRLNLSTDHDDDNDDGDDGDDDQFAKKGKSSLSLNFNP'] type: CDS location: join{[23220:24174](+), [24243:24357](+), [24411:24664](+), [24742:25137](+), [25225:25445](+), [25526:25711](+), [25782:25905](+), [25993:26478](+), [26563:26730](+), [26813:26983](+), [27073:27235](+), [27319:27415](+), [27504:28133](+), [28313:28507](+), [28591:28782](+), [28861:30013](+), [30111:30518](+), [30603:30781](+)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6715634'] Key: evidence, Value: ['not_experimental'] Key: note, Value: ['similar to UFD1 protein emb|CAB10321.1; similar to ESTs gb|H36434, gb|AI996152.1'] Key: product, Value: ['T25K16.4'] Key: protein_id, Value: ['AAF26461.1'] Key: translation, Value: ['MVMEDEPREATIKPSYWLDACEDISCDLIDDLVSEFDPSSVAVNESTDENGVINDFFGGIDHILDSIKNGGGLPNNGVSDTNSQINEVTVTPQVIAKETVKENGLQKNGGKRDEFSKEEGDKDRKRARVCSYQSERSNLSGRGHVNNSREGDRFMNRKRTRNWDEAGNNKKKRECNNYRRDGRDREVRGYWERDKVGSNELVYRSGTWEADHERDVKKVSGGNRECDVKAEENKSKPEERKEKVVEEQARRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLVYQVPPNKKHQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQFLKLTSFFLFSSTQVLVMTAQILLNILRHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKGVSSQVDCAIKIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWSLHETIKQMIAAVEEAAQASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHKLRAINYTLAELGQWCAYKVGQSFLSALQSDERVNFQVDVKFQESYLSEVVSLLQCELLEGAAAEKVAAEVGKPENGNAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVTPKVQSLIKLLLKYQHTADFRAIVFVERVVAALVLPKVRIKVFAELPSLSFIRCASMIGHNNSQEMKSSQMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYILMVERYIKSFKNYILIFVTTGHQISTDMSTCVTCRGNVSHAAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISIDAVPGTVYKVEATGAMVSLNSAVGLVHFYCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFEILEGPVCSSMRLAQQVDIIVSACKKLHEMGAFTDMLLPDKGSGQDAEKADQDDEGEPVPGTARHREFYPEGVADVLKGEWVSSGKEVCESSKLFHLYMYNVRCVDFGSSKDPFLSEVSEFAILFGNELDAEVLSMSMDLYVARAMITKASLAFKGSLDITENQLSSLKKFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPVTDNTSMEPIKGINWELVEKITKTTAWDNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHNIVFGQKSHPTYGIRGAVASFDVVRASGLLPVRDAFEKEVEEDLSKGKLMMADGCMVAEDLIGKIVTAAHSGKRFYVDSICYDMSAETSFPRKEGYLGPLEYNTYADYYKQKIYVVQDRLFFYFLHNLRLLRLYKSSSIMLFIRYGVDLNCKQQPLIKGRGVSYCKNLLSPRFEQSGESETVLDKTYYVFLPPELCVVHPLSGSLIRGAQRLPSIMRRVESMLLAVQLKNLISYPIPTSKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVEDDPDEVDGTLKNVNVPESVLKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQVNKIKKQSILFSKSFKCLTVWLLFVFQIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEKEIAESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKTFS'] type: CDS location: join{[32248:32372](-), [32132:32161](-), [31983:32049](-), [31789:31897](-), [31634:31700](-), [31340:31515](-), [31222:31304](-), [31083:31126](-)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6715648'] Key: evidence, Value: ['not_experimental'] Key: note, Value: ['putative inorganic pyrophosphatase gi|3510259; similar to ESTs gb|T42316, gb|AI994042.1, gb|AI994013.1, emb|Z29202'] Key: product, Value: ['T25K16.5'] Key: protein_id, Value: ['AAF26475.1'] Key: translation, Value: ['MSEETKDNQRLQRPAPRLNERILSSLSRRSVAAHPWHDLEIGPGAPQIFNVVVEITKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFVPRTLCEDNDPIDVLVIMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCVDDPEYKHYTDIKELPPHRLSEIRRFFEDCILFLQCSSLFISIDLSTNKKNENKEVAVNDFLPSESAVEAIQYSMDLYAEYILHTLRR'] type: CDS location: join{[36724:36763](-), [36511:36623](-), [36325:36387](-), [35431:35701](-), [35268:35349](-), [34102:35173](-), [33693:34029](-)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6715647'] Key: evidence, Value: ['not_experimental'] Key: note, Value: ['putative late elongated hypocotyl emb|CAA07004; similar to ESTS gb|AI993521.1, gb|AA650979'] Key: product, Value: ['T25K16.6'] Key: protein_id, Value: ['AAF26474.1'] Key: translation, Value: ['MDTNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKFGKAHSFWFTFQLEKEAEVKGIPVCQALDIEIPPPRPKRKPNTPYPRKPGNNGTSSSQVSSAKDAKLVSSASSSQLNQAFLDLEKMPFSEKTSTGKENQDENCSGVSTVNKYPLPTKVSGDIETSKTSTVDNAVQDVPKKNKDKDGNDGTTVHSMQNYPWHFHADIVNGNIAKCPQNHPSGMVSQDFMFHPMREETHGHANLQATTASATTTASHQAFPACHSQDDYRSFLQISSTFSNLIMSTLLQNPAAHAAATFAASVWPYASVGNSGDSSTPMSSSPPSITAIAAATVAAATAWWASHGLLPVCAPAPITCVPFSTVAVPTPAMTEMDTVENTQPFEKQNTALQDQNLASKSPASSSDDSDETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLVDRSSCGSNTPSGSDAETDALDKMEKDKEDVKETDENQPDVIELNNRKIKMRDNNSNNNATTDSWKEVSEEGRIAFQALFARERLPQSFSPPQVAENVNRKQSDTSMPLAPNFKSQDSCAADQEGVVMIGVGTCKSLKTRQTGFKPYKRCSMEVKESQVGNINNQSDEKVCKRLRLEGEAST'] type: CDS location: join{[40376:40579](-), [39914:40031](-), [39110:39516](-), [38837:38989](-), [38599:38756](-)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6715646'] Key: evidence, Value: ['not_experimental'] Key: note, Value: ['similar to Medicago truncatula MtN2 gi|3193308; similar to EST gb|H77065'] Key: product, Value: ['T25K16.7'] Key: protein_id, Value: ['AAF26473.1'] Key: translation, Value: ['MAGDMQGVRVVEKYSPVIVMVMSNVAMGSVNALVKKALDVGVNHMVIGAYRMAISALILVPFAYVLERASLMQFFFLLGLSYTSATVSCALVSMLPAITFALALIFRTENVKILKTKAGMLKVIGTLICISGALFLTFYKGPQISNSHSHSHGGASHNNNDQDKANNWLLGCLYLTIGTVLLSLWMLFQGTLSIKYPCKYSSTCLMSIFAAFQCALLSLYKSRDVNDWIIDDRFVITVIIYAGVVGQAMTTVATTWGIKKLGAVFASAFFPLTLISATLFDFLILHTPLYLGSVIGSLVTITGLYMFLWGKNKETESSTALSSGMDNEAQYTTPNKDNDSKSPV'] type: CDS location: join{[48637:48868](-), [47776:48554](-), [47447:47684](-), [46074:46313](-), [45718:45847](-), [45342:45656](-), [45149:45261](-)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6715645'] Key: evidence, Value: ['not_experimental'] Key: note, Value: ['putative pyruvate dehydrogenase E1 alpha subunit gi|2454182; similar to ESTs emb|Z48417, gb|AW039459.1, gb|T15146, emb|Z48416, gb|AF066871, gb|T76832, gb|AI996061.1'] Key: product, Value: ['T25K16.8'] Key: protein_id, Value: ['AAF26472.1'] Key: translation, Value: ['MATAFAPTKLTATVPLHGSHENRLLLPIRLAPPSSFLGSTRSLSLRRLNHSNATRRSPVVSVQEVVKEKQSTNNTSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLTKSDSVVSTYRDHVHALSKGVSARAVMSELFGKVTGCCRGQGGSMHMFSKEHNMLGGFAFIGEGIPVATGAAFSSKYRREVLKQDCDDVTVAFFGDGTCNNGQFFECLNMAALYKLPIIFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAVTRARRGEGPTLVECETYRFRGHSLADPDELRDAAEKAKYAARDPIAALKKYLIENKLAKEAELKSIEKKIDELVEEAVEFADASPQPGRSQLLENVFADPKGFGIGPDGRYRSQPLQIKVSSSELSVLDEEKEEEVVKGEAEPNKDSVVSKAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTVRARETKKQEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTVNNMKVAESSSEKVSRRVSRKPTVLLLLQRHLLDTNNV'] type: CDS location: join{[50584:50656](-), [50120:50333](-), [49985:50039](-)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6715644'] Key: evidence, Value: ['not_experimental'] Key: note, Value: ['similar to acidic ribosomal protein p1 gi|2252857; similar to ESTs gb|T42111, gb|AI099979, gb|AA728491'] Key: product, Value: ['T25K16.9'] Key: protein_id, Value: ['AAF26471.1'] Key: translation, Value: ['MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD'] type: CDS location: join{[51940:52048](+), [52135:52432](+), [52639:52885](+), [53185:53326](+), [53404:54196](+)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6715635'] Key: evidence, Value: ['not_experimental'] Key: note, Value: ['hypothetical protein'] Key: product, Value: ['T25K16.10'] Key: protein_id, Value: ['AAF26462.1'] Key: translation, Value: ['MGKKNGSSSWLTAVKRAFRSPTKKDHSNDVEEDEEKKREKRRWFRKPATQESPVKSSGISPPAPQEDSLNVNSKPSPETAPSYATTTPPSNAGKPPSAVVPIATSASKTLAPRRIYYARENYAAVVIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQSRVLDQRKRLSHDGSRKSAFSDSHAVFESRYLQDLSDRQSMSREGSSAAEDWDDRPHTIDAVKVMLQRRRDTALRHDKTNLSQAFSQKMWRTVGNQSTEGHHEVELEEERPKWLDRWMATRPWDKRASSRASVDQRVSVKTVEIDTSQPYSRTGAGSPSRGQRPSSPSRTSHHYQSRNNFSATPSPAKSRPILIRSASPRCQRDPREDRDRAAYSYTSNTPSLRSNYSFTARSGCSISTTMVNNASLLPNYMASTESAKARIRSHSAPRQRPSTPERDRAGLVKKRLSYPVPPPAEYEDNNSLRSPSFKSVAGSHFGGMLEQQSNYSSCCTESNGVEISPASTSDFRNWLR'] type: CDS location: [57093:58680](-) qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6715643'] Key: evidence, Value: ['not_experimental'] Key: note, Value: ['putative fatty acid elongase 3-ketoacyl-coA synthase 1 gi|4091810; similar to ESTs gb|T42377, gb|N96054, gb|T44368, gb|AI999379.1, emb|Z26005'] Key: product, Value: ['T25K16.11'] Key: protein_id, Value: ['AAF26470.1'] Key: translation, Value: ['MERTNSIEMDRERLTAEMAFRDSSSAVIRIRRRLPDLLTSVKLKYVKLGLHNSCNVTTILFFLIILPLTGTVLVQLTGLTFDTFSELWSNQAVQLDTATRLTCLVFLSFVLTLYVANRSKPVYLVDFSCYKPEDERKISVDSFLTMTEENGSFTDDTVQFQQRISNRAGLGDETYLPRGITSTPPKLNMSEARAEAEAVMFGALDSLFEKTGIKPAEVGILIVNCSLFNPTPSLSAMIVNHYKMREDIKSYNLGGMGCSAGLISIDLANNLLKANPNSYAVVVSTENITLNWYFGNDRSMLLCNCIFRMGGAAILLSNRRQDRKKSKYSLVNVVRTHKGSDDKNYNCVYQKEDERGTIGVSLARELMSVAGDALKTNITTLGPMVLPLSEQLMFLISLVKRKMFKLKVKPYIPDFKLAFEHFCIHAGGRAVLDEVQKNLDLKDWHMEPSRMTLHRFGNTSSSSLWYEMAYTEAKGRVKAGDRLWQIAFGSGFKCNSAVWKALRPVSTEEMTGNAWAGSIDQYPVKVVQ'] type: CDS location: join{[63132:63513](-), [61669:61826](-), [59507:59665](-)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6715642'] Key: evidence, Value: ['not_experimental'] Key: note, Value: ['hypothetical protein'] Key: product, Value: ['T25K16.12'] Key: protein_id, Value: ['AAF26469.1'] Key: translation, Value: ['MEKRSDSESVEILGDWDSPPPEERIVMVSVPTSPESDYARSNQPKEIESRVSDKETASASGEVAARRVLPPWMDPSYEWGGGKWKVDGRKNKNKKEKEKEKEEIIPFKEIIEALLGNSGDKVQQDNKVFEVAPSLHVVELRKTGDDTLEFHKVYFRFNLYQPVQLPLILFVVIRFSMLKIIHYHQFTMAHIKEFVCMWDTHLYKEITNLNIWDTLSSTLVLAIWTVNASHE'] type: CDS location: join{[67025:67214](-), [66536:66599](-), [66379:66451](-), [66151:66259](-), [65963:66044](-), [65808:65862](-), [65434:65566](-), [65264:65354](-), [65032:65158](-), [64811:64919](-), [64602:64719](-), [64452:64509](-), [64271:64358](-), [64099:64177](-)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6715641'] Key: evidence, Value: ['not_experimental'] Key: note, Value: ['similar to wpk4 protein kinase dbj|BAA34675; similar to ESTs dbj|AB015122, gb|AI997157.1'] Key: product, Value: ['T25K16.13'] Key: protein_id, Value: ['AAF26468.1'] Key: translation, Value: ['MSGSRRKATPASRTRVGNYEMGRTLGEGSFAKVKYAKNTVTGDQAAIKILDREKVFRHKMVEQLKREISTMKLIKHPNVVEIIEVMASKTKIYIVLELVNGGELFDKIAQQGRLKEDEARRYFQQLINAVDYCHSRGVYHRDLKPENLILDANGVLKVSDFGLSAFSRQVREDGLLHTACGTPNYVAPEVLSDKGYDGAAADVWSCGVILFVLMAGYLPFDEPNLMTLYKRVRICKAEFSCPPWFSQGAKRVIKRILEPNPITRISIAELLEDEWFKKGYKPPSFDQDDEDITIDDVDAAFSNSKECLVTEKKEKPVSMNAFELISSSSEFSLENLFEKQAQLVKKETRFTSQRSASEIMSKMEETAKPLGFNVRKDNYKIKMKGDKSGRKGQLSVATEVFEVAPSLHVVELRKTGGDTLEFHKVCDSFYKNFSSGLKDVVWNTDAAAEEQKQ'] type: CDS location: join{[71643:71700](-), [70742:71357](-), [70533:70670](-), [69830:69987](-)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6715640'] Key: evidence, Value: ['not_experimental'] Key: note, Value: ['similar to ataxia-telangiectasia group D protein pir|A49618'] Key: product, Value: ['T25K16.14'] Key: protein_id, Value: ['AAF26467.1'] Key: translation, Value: ['MVSDLPLDEDDIALLKSPYCDDGGDEDVNSAPNIFTYDNVPLKKRHYLGTSDTFRSFEPLNEHACIVCDIADDGVVPCSGNECPLAVHRKCVELDCEDPATFYCPYCWFKEQATRSTALRTRGVAAAKTLVQYGCSELRSGDIVMTRENSQLENGSDNSLPMQLHENLHQLQELVKHLKARNSQLDESTDQFIDMEKSCGEAYAVVNDQPKRVLWTVNEEKMLREGVEKFSDTINKNMPWKKILEMGKGIFHTTRNSSDLKDKWRNMVRIIILIWLRSRLTSSSSSQRSEIKMERERNAGVMKKMSPTGTIQRLEFVGWYL'] type: CDS location: join{[72284:72371](+), [72788:72865](+), [72988:73097](+), [73189:73442](+), [73523:73585](+)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6715636'] Key: evidence, Value: ['not_experimental'] Key: note, Value: ['similar to SYT gi|2252866; similar to ESTs emb|F14390, gb|H36066, emb|F14391'] Key: product, Value: ['T25K16.15'] Key: protein_id, Value: ['AAF26463.1'] Key: translation, Value: ['MQQQQSPQMFPMVPSIPPANNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLAAIADAQPPPPTPGPSPSTAVAAQMATPHSGMQPPSYFMQHPQASPAGIFAPRGPLQFGSPLQFQDPQQQQQIHQQAMQGHMGIRPMGMTNNGMQHAMQQPETGLGGNVGLRGGKQDGADGQGKDDGK'] type: CDS location: join{[74035:74145](-), [73806:73990](-)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6715639'] Key: evidence, Value: ['not_experimental'] Key: note, Value: ['similar to stress-induced protein OZI1 precursor pir|S59544; similar to EST gb|AI995719.1'] Key: product, Value: ['T25K16.16'] Key: protein_id, Value: ['AAF26466.1'] Key: translation, Value: ['MASGGKAKYIIGALIGSFGISYIFDKVISDNKIFGGKDDLNGYLLVKISGTTPGTVSNKEWWAATDEKFQAWPRTAGPPVVMNPISRQNFIVKTRPE'] type: CDS location: join{[75334:76249](+), [76515:76653](+), [76732:76982](+), [77014:77148](+)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6715637'] Key: evidence, Value: ['not_experimental'] Key: note, Value: ['putative reverse transcriptase gb|AAD17395'] Key: product, Value: ['T25K16.17'] Key: protein_id, Value: ['AAF26464.1'] Key: translation, Value: ['MKEDRRLPHKRDAFQFLKTKAAYVIVIVLTYAFGYFSAYHYHQPLQQQLPPSTTAVETTKPQVCSIDNFRVTTPCGNLVPPELIRQTVIDRIFNGTSPYIDFPPPHAKKFLRPKRIKGWGSYGAVFENLIRRVKPKTIVEVGSFLGASAIHMANLTRRLGLEETQILCVDDFRGWPGFRDRFKDMALVNGDVLLMYQFMQNVVISDFSGSILPVPFSTGSALEKLCEWGVTADLVEIDAGHDFNSAWADINRAVRILRPGGVIFGHDYFTAADNRGVRRAVNLFAEINRLKVKTDGQHWVIDSVKVINKGTRFAISKTVAKIKEDANQWFFAQVLENQDLVNEQAVHISVKVLRGFLRDEHGKVLIHARRSFASVHSKLDATFLCWQWAMESMKSLRVDKIIFASEDNDLIGAVTRLPSWPSYKFQIHFLLGELIRSSNLGAHLIAKSVTMEDRRQSYVATGFPFWLKHLFEKERSIA'] type: CDS location: join{[83585:84581](-), [82750:83373](-), [82722:82738](-)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6715638'] Key: evidence, Value: ['not_experimental'] Key: note, Value: ['putative cytochrome P450 gi|3831440'] Key: product, Value: ['T25K16.18'] Key: protein_id, Value: ['AAF26465.1'] Key: translation, Value: ['MFSLNMRTEIESLWVFALASKFNIYMQQHFASLLVAIAITWFTITIVFWSTPGGPAWGKYFFTRRFISLDYNRKYKNLIPGPRGFPLVGSMSLRSSHVAHQRIASVAEMSNAKRLMAFSLGDTKVVVTCHPAVAKEILNSSVFADRPVDETAYGLMFNRAMGFAPNGTYWRTLRRLGSNHLFNPKQIKQSEDQRRVIATQMVNAFARNPKSACAVRDLLKTASLCNMMGLVFGREYELESNNNLESECLKGLVEEGYDLLGTLNWTDHLPWLAGLDFQQIRFRCSQLVPKVNLLLSRIIHEQRAATGNFLDMLLSLQGSEKLSESDMVAVLWEMIFRGTDTVAVLVEWVLARIVMHPKVQLTVHDELDRVVGRSRTVDESDLPSLTYLTAMIKEVLRLHPPGPLLSWARLSITDTSVDGYHVPAGTTAMVNMWAIARDPHVWEDPLEFKPERFVAKEGEAEFSVFGSDLRLAPFGSGKRVCPGKNLGLTTVSFWVATLLHEFEWLPSVEANPPDLSEVLRLSCEMACPLIVNVSSRRKIIAWMF'] DB cross refs [] ***Record from protein_refseq.gb with the FeatureParser Seq: Seq('MNNRWILHAAFLLCFSTTALSINYKQLQLQERTNIRKCQELLEQLNGKINLTYR...FQN', IUPACProtein()) Id: NP_034640.1 Name: NP_034640 Description interferon beta, fibroblast [Mus musculus]. Annotations*** Key: accessions Value: ['NP_034640'] Key: comment Value: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from K00020.1. Key: data_file_division Value: ROD Key: date Value: 01-NOV-2000 Key: db_source Value: REFSEQ: accession NM_010510.1 Key: gi Value: 6754304 Key: keywords Value: [''] Key: organism Value: Mus musculus Key: pid Value: g6754304 References* location: [0:182] authors: Higashi,Y., Sokawa,Y., Watanabe,Y., Kawade,Y., Ohno,S., Takaoka,C. and Taniguchi,T. title: structure and expression of a cloned cdna for mouse interferon-beta journal: J. Biol. Chem. 258, 9522-9529 (1983) medline id: 83265757 pubmed id: comment: Key: sequence_version Value: 1 Key: source Value: house mouse Key: taxonomy Value: ['Eukaryota', 'Metazoa', 'Chordata', 'Craniata', 'Vertebrata', 'Euteleostomi', 'Mammalia', 'Eutheria', 'Rodentia', 'Sciurognathi', 'Muridae', 'Murinae', 'Mus'] Features type: source location: [0:182] qualifiers: Key: chromosome, Value: ['4'] Key: db_xref, Value: ['taxon:10090'] Key: map, Value: ['4 42.6 cM'] Key: organism, Value: ['Mus musculus'] type: Protein location: [0:182] qualifiers: Key: product, Value: ['interferon beta, fibroblast'] type: sig_peptide location: [0:21] qualifiers: type: Region location: [0:182] qualifiers: Key: db_xref, Value: ['CDD:pfam00143'] Key: note, Value: ['interferon'] Key: region_name, Value: ['Interferon alpha/beta domain'] type: mat_peptide location: [21:182] qualifiers: Key: product, Value: ['ifn-beta'] type: Region location: [55:170] qualifiers: Key: db_xref, Value: ['CDD:IFabd'] Key: note, Value: ['IFabd'] Key: region_name, Value: ['Interferon alpha, beta and delta.'] type: CDS location: [0:182] qualifiers: Key: coded_by, Value: ['NM_010510.1:21..569'] Key: db_xref, Value: ['LocusID:15977', 'MGD:MGI:107657'] Key: gene, Value: ['Ifnb'] DB cross refs [] ***Record from extra_keywords.gb with the FeatureParser Seq: Seq('TCCAGGGGATTCACGCGCAATATGTTTCCCTCGCTCGTCTGCAGGGTGTGGGAA...TTG', IUPACAmbiguousDNA()) Id: AL138972.1 Name: DMBR25B3 Description Drosophila melanogaster BAC clone BACR25B3. Annotations*** Key: accessions Value: ['AL138972'] Key: comment Value: Sequence submitted by Takis Benos, EMBL Outstation - The EBI, Hinxton, Cambridge, CB10 1SD, U.K. E-mail: benos@ebi.ac.uk on behalf of the European Drosophila Genome Sequencing Consortium. For further information see the European Drosophila Genome Sequencing Consortium's web site: http://edgp.ebi.ac.uk/. The syntax for the representation of annotation used in this record is documented at: ftp://ftp.ebi.ac.uk/pub/databases/edgp/sequence_annotation.README Coding sequences are predicted from computer analysis, using both gene and CDS prediction programs and matches to other sequences. These predictions and matches have been evaluated by the annotators and may have been refined by hand (in which case a Genefinder prediction will have no score. The annotators have also used their judgement on what matches to represent in this record. A far more complete annotation record is available from FlyBase (http://flybase.bio.indiana.edu/) through the FlyBase Annotation Object linked by the db_xref qualifier in the Feature Table. IMPORTANT: This sequence is NOT necessarily the entire insert of clone BACR25B3. It may be shorter, since we are minimising the overlap between clones to 100 bases, by trimming them. Sequence in absolute orientation with respect to chromosome Clone=BACR25B3; Contig ID=1; Length=154329; Status=Finished. Key: data_file_division Value: INV Key: date Value: 07-FEB-2000 Key: gi Value: 6946668 Key: keywords Value: [''] Key: organism Value: Drosophila melanogaster References* location: [0:154329] authors: Murphy,L., Harris,D. and Barrell,B. title: Sequencing the distal X chromosome of Drosophila melanogaster journal: Unpublished medline id: pubmed id: comment: Sanger Centre, Wellcome Trust Genome Campus, Hinxton Hall, Hinxton, Cambridge CB10 1SA, U.K. location: [0:154329] authors: Benos,P. title: Direct Submission journal: Submitted (06-FEB-2000) European Drosophila Genome Sequencing Consortium medline id: pubmed id: comment: Key: sequence_version Value: 1 Key: source Value: fruit fly Key: taxonomy Value: ['Eukaryota', 'Metazoa', 'Arthropoda', 'Tracheata', 'Hexapoda', 'Insecta', 'Pterygota', 'Neoptera', 'Endopterygota', 'Diptera', 'Brachycera', 'Muscomorpha', 'Ephydroidea', 'Drosophilidae', 'Drosophila'] Features type: source location: [0:154329](+) qualifiers: Key: clone, Value: ['BAC BACR25B3'] Key: db_xref, Value: ['taxon:7227'] Key: organism, Value: ['Drosophila melanogaster'] type: gene location: [22147:27773](-) qualifiers: Key: gene, Value: ['EG:BACR25B3.11'] Key: note, Value: [''] type: CDS location: join{[27622:27773](-), [26676:27009](-), [25023:25178](-), [24615:24888](-), [23629:24555](-), [22859:23560](-), [22374:22791](-), [22147:22299](-)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6946669'] Key: gene, Value: ['EG:BACR25B3.11'] Key: note, Value: ["/prediction=(method:''genefinder'', version:''084'', score:''105.71''); /prediction=(method:''genscan'', version:''1.0''); /match=(desc:''BASEMENT MEMBRANE-SPECIFIC HEPARAN SULFATE PROTEOGLYCAN CORE PROTEIN PRECURSOR (HSPG) (PERLECAN) (PLC)'', species:''Homo sapiens (Human)'', ranges:(query:24292..24549, target:SWISS-PROT::P98160:3713..3628, score:''201.00''), (query:24016..24291, target:SWISS-PROT::P98160:3815..3724, score:''139.00''), (query:23857..24006, target:SWISS-PROT::P98160:3866..3817, score:''99.00''), (query:24052..24327, target:SWISS-PROT::P98160:4059..3968, score:''143.00''), (query:24046..24312, target:SWISS-PROT::P98160:4341..4253, score:''116.00''), (query:23806..23901, target:SWISS-PROT::P98160:4177..4146, score:''76.00''), (query:23203..23382, target:SWISS-PROT::P98160:4062..4003, score:''116.00''), (query:22523..22777, target:SWISS-PROT::P98160:4288..4204, score:''112.00''), (query:22235..22300, target:SWISS-PROT::P98160:4358..4337, score:''64.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''GM03359.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM03359 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:25024..25235, target:EMBL::AA801707:438..227, score:''1024.00''), (query:24851..24898, target:EMBL::AA801707:476..429, score:''204.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''LD08615.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD08615 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:24629..24727, target:EMBL::AA264808:99..1, score:''495.00''), (query:24417..24566, target:EMBL::AA264808:250..101, score:''687.00''), (query:24048..24420, target:EMBL::AA264808:618..246, score:''1847.00''), (query:23986..24036, target:EMBL::AA264808:678..628, score:''237.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''HL02745.5prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL02745 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:23944..24045, target:EMBL::AA697546:103..2, score:''510.00''), (query:23630..23943, target:EMBL::AA697546:416..103, score:''1570.00''), (query:23419..23561, target:EMBL::AA697546:558..416, score:''715.00''), (query:23306..23417, target:EMBL::AA697546:670..559, score:''524.00''), (query:23280..23316, target:EMBL::AA697546:695..659, score:''167.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''GM08137.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM08137 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:23235..23278, target:EMBL::AA696682:44..1, score:''139.00''), (query:22986..23251, target:EMBL::AA696682:294..29, score:''1321.00'')), method:''blastn'', version:''1.4.9'')"] Key: protein_id, Value: ['CAB72284.1'] Key: translation, Value: ['MACNCNQSMIYQSNERRDYNCPGAPQYPYNRFKGGVSLKDTPCMVLYICADFKSSKLSSAKPIISGPATTRAPAISYVCQPNDFKCVSHPHTCVRANMVCDGIYDCTDHSDEFNCIAGKGSGKSESNSGSGSFKRWKKSPEQGRRSLAKAVKNRKLRKRSFAKSRDYSLKLDDQSSNLRAGESTDVECYSSDDTYTDVVWERSDGAPLSNNVRQVGNRLVISNVSPSDAGNYVCKCKTDEGDLYTTSYKLEVEDQPHELKSSKIVYAKVGANADLQCGADESRQPTYRWSRQYGQLQAGRSLMNEKLSLDSVQANDAGTYICTAQYADGETADFPNILVVTGAIPQFRQEPRSYMSFPTLPNSSFKFNFELTFRPENGDGLLLFNGQTRGSGDYIALSLKDRYAEFRFDFGGKPMLVRAEEPLALNEWHTVRVSRFKRDGYIQVDEQHPVAFPTLQQIPQLDLIEDLYIGGVPNWELLPADAVSQQVGFVGCISRLTLQGRTVELIREAKYKEGITDCRPCAQGPCQNKGVCLESQTEQAYTCICQPGWTGRDCAIEGTQCTPGVCGAGRCENTENDMECLCPLNRSGDRCQYNEILNEHSLNFKGNSFAAYGTPKVTKVNITLSVRPASLEDSVILYTAESTLPSGDYLALVLRGGHAELLINTAARLDPVVVRSAEPLPLNRWTRIEIRRRLGEGILRVGDGPERKAKAPGSDRILSLKTHLYVGGYDRSTVKVNRDVNITKGFDGCISRLYNFQKPVNLLADIKDAANIQSCGETNMIGGDEDSDNEPPVPPPTPDVHENELQPYAMAPCASDPCENGGSCSEQEDVAVCSCPFGFSGKHCQEHLQLGFNASFRGDGYVELNRSHFQPALEQSYTSMGIVFTTNKPNGLLFWWGQEAGEEYTGQDFIAAAVVDGYVEYSMRLDGEEAVIRNSDIRVDNGERHIVIAKRDENTAILEVDRMLHSGETRPTSKKSMKLPGNVFVGGAPDLEVFTGFRYKHNLNGCIVVVEGETVGQINLSSAAVNGVNANVCPA'] type: gene location: [29925:33978](-) qualifiers: Key: gene, Value: ['EG:BACR25B3.10'] type: CDS location: join{[33816:33978](-), [33532:33713](-), [32685:33289](-), [32323:32634](-), [31658:31836](-), [31196:31591](-), [30616:31076](-), [30269:30519](-), [29925:30108](-)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6946670'] Key: gene, Value: ['EG:BACR25B3.10'] Key: note, Value: ["/prediction=(method:''genefinder'', version:''084'', score:''98.50''); /prediction=(method:''genscan'', version:''1.0''); /match=(desc:''BASEMENT MEMBRANE-SPECIFIC HEPARAN SULFATE PROTEOGLYCAN CORE PROTEIN PRECURSOR (HSPG) (PERLECAN) (PLC)'', species:''Homo sapiens (Human)'', ranges:(query:33540..33716, target:SWISS-PROT::P98160:2716..2658, score:''113.00''), (query:32859..32963, target:SWISS-PROT::P98160:3341..3307, score:''63.00''), (query:33150..33215, target:SWISS-PROT::P98160:3530..3509, score:''73.00''), (query:32973..33089, target:SWISS-PROT::P98160:3588..3550, score:''71.00''), (query:32358..32567, target:SWISS-PROT::P98160:3650..3581, score:''107.00''), (query:31222..31323, target:SWISS-PROT::P98160:2620..2587, score:''80.00''), (query:31489..31572, target:SWISS-PROT::P98160:3387..3360, score:''72.00''), (query:31495..31593, target:SWISS-PROT::P98160:3575..3543, score:''60.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''GM02481.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM02481 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:30008..30036, target:EMBL::AA695253:29..1, score:''145.00''), (query:29549..30004, target:EMBL::AA695253:487..32, score:''2262.00'')), method:''blastn'', version:''1.4.9'')"] Key: protein_id, Value: ['CAB72285.1'] Key: translation, Value: ['MFLATLDTNDPTDIGTEDPVLTQIIVSIQKPEITIVPVGGSMTLSCSGRMRWSNSPVIVNWYKENSRLPENVEVQGGNLYLYDLQVSDSGVYICQAVNNETASVFKDTVSITITKKDQLSPAEIVNLPSHVTFEEYVNNEIICEVLGNPAPRVTWARVDGHADAQSTRTYDNRLIFDSPRKSDEGRYRCQAENDQNRDEKYVIVYVQSNPPQPPPQQDRLYITPEEINGLAGESFQLNCQFTSVASLRYDWSHNGRSLSSSPARNVEIRGNTLEVRDASESDSGVYTCVAYDVRTRRNFTESARVNIDRREEQPFGVLMRMMILTDSLINHSNKPIIESLEQNILIIQGEDYSITCEASGSPYPSIKWAKVHDFMPENVHISGNVLTIYGARFENRGVYSCVAENDHGSDLSSTSIDIEPRERPSVKIVSAPLQTFSVGAPASLYCTVEGIPDPTVEWVRVDGQPLSPRHKIQSPGYMVIDDIQLEDSGDYECRAKNIVGEATGVATITVQEPTLVQIIPDNRDLRLTEGDELSLTCVGSGVPNPEVEWVNEMALKRDLYSPPSNTAILKIYRVTKADAGIYTCHGKNEAGSDEAHVRVEVQERRGDIGGVDDDSDRDPINYNPPQQQNPGIHQPGSNQLLATDIGDNVTLTCDMFQPLNTRWERVDGAPLPRNAYTIKNRLEIVRVEQQNLGQYRCNGIGRDGNVKTYFVKELVLMPLPRIRFYPNIPLTVEAGQNLDVHCQVENVRPEDVHWSTDNNRPLPSSVRIVGSVLRFVSITQAAAGEYRCSAFNQYGNRSQIARVAVKKPADFHQVPQSQLQRHREGENIQLQCTVTDQYGVRAQDNVEFNWFRDDRRPLPNNARTDSQILVLTNLRPEDAGRYICNSYDVDRGQQLPEVSIDLQVLSE'] type: gene location: [36118:56153](-) qualifiers: Key: gene, Value: ['EG:BACR25B3.1'] type: CDS location: join{[56030:56153](-), [52848:52966](-), [50826:50937](-), [50318:50441](-), [49970:50102](-), [49762:49876](-), [49436:49562](-), [48410:48878](-), [47682:47831](-), [47221:47315](-), [46517:46688](-), [45975:46125](-), [45660:45793](-), [45147:45233](-), [44811:44928](-), [44240:44438](-), [43603:43837](-), [42750:42876](-), [42187:42415](-), [41854:42085](-), [41545:41620](-), [40680:40814](-), [40518:40612](-), [40344:40434](-), [39655:40042](-), [37280:39517](-), [36118:37213](-)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6946671'] Key: gene, Value: ['EG:BACR25B3.1'] Key: note, Value: ["/prediction=(method:''genscan'', version:''1.0''); /prediction=(method:''genefinder'', version:''084''); /match=(desc:''LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN PRECURSOR (LRP)'', species:''Caenorhabditis elegans'', ranges:(query:50831..50941, target:SWISS-PROT::Q04833:1221..1185, score:''95.00''), (query:50840..51025, target:SWISS-PROT::Q04833:2865..2804, score:''102.00''), (query:50828..50935, target:SWISS-PROT::Q04833:3788..3753, score:''119.00''), (query:50323..50394, target:SWISS-PROT::Q04833:3706..3683, score:''77.00''), (query:50326..50433, target:SWISS-PROT::Q04833:1263..1228, score:''120.00''), (query:49948..50079, target:SWISS-PROT::Q04833:2917..2874, score:''88.00''), (query:49432..49587, target:SWISS-PROT::Q04833:4085..4034, score:''102.00''), (query:49429..49560, target:SWISS-PROT::Q04833:3915..3872, score:''97.00''), (query:48622..48720, target:SWISS-PROT::Q04833:1302..1270, score:''99.00''), (query:47698..47799, target:SWISS-PROT::Q04833:3996..3963, score:''88.00''), (query:47686..47775, target:SWISS-PROT::Q04833:3835..3806, score:''59.00''), (query:47692..47787, target:SWISS-PROT::Q04833:4041..4010, score:''83.00''), (query:47229..47315, target:SWISS-PROT::Q04833:3742..3714, score:''88.00''), (query:47220..47312, target:SWISS-PROT::Q04833:3829..3799, score:''67.00''), (query:47232..47318, target:SWISS-PROT::Q04833:3866..3838, score:''78.00''), (query:46552..46656, target:SWISS-PROT::Q04833:1344..1310, score:''95.00''), (query:46543..46650, target:SWISS-PROT::Q04833:3951..3916, score:''98.00''), (query:45983..46129, target:SWISS-PROT::Q04833:2870..2822, score:''82.00''), (query:45971..46096, target:SWISS-PROT::Q04833:4089..4048, score:''82.00''), (query:45678..45764, target:SWISS-PROT::Q04833:3666..3638, score:''80.00''), (query:45128..45238, target:SWISS-PROT::Q04833:94..58, score:''100.00''), (query:45158..45268, target:SWISS-PROT::Q04833:3990..3954, score:''80.00''), (query:44263..44379, target:SWISS-PROT::Q04833:85..47, score:''77.00''), (query:44251..44367, target:SWISS-PROT::Q04833:3995..3957, score:''100.00''), (query:43605..43688, target:SWISS-PROT::Q04833:2994..2967, score:''84.00''), (query:42764..42877, target:SWISS-PROT::Q04833:2951..2914, score:''77.00''), (query:42180..42377, target:SWISS-PROT::Q04833:260..195, score:''148.00''), (query:42234..42419, target:SWISS-PROT::Q04833:3199..3138, score:''106.00''), (query:39807..40013, target:SWISS-PROT::Q04833:2901..2833, score:''167.00''), (query:39645..39857, target:SWISS-PROT::Q04833:3138..3068, score:''151.00''), (query:39846..40046, target:SWISS-PROT::Q04833:3241..3175, score:''132.00''), (query:39654..39866, target:SWISS-PROT::Q04833:3913..3843, score:''201.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2 PRECURSOR (MEGALIN) (GLYCOPROTEIN 330)'', species:''Homo sapiens (Human)'', ranges:(query:50834..50935, target:SWISS-PROT::P98164:2733..2700, score:''99.00''), (query:50840..50947, target:SWISS-PROT::P98164:3063..3028, score:''94.00''), (query:50831..50926, target:SWISS-PROT::P98164:3918..3887, score:''102.00''), (query:50326..50433, target:SWISS-PROT::P98164:1222..1187, score:''107.00''), (query:50302..50394, target:SWISS-PROT::P98164:3762..3732, score:''91.00''), (query:49773..49904, target:SWISS-PROT::P98164:2939..2896, score:''90.00''), (query:49438..49578, target:SWISS-PROT::P98164:217..171, score:''116.00''), (query:49429..49545, target:SWISS-PROT::P98164:3796..3758, score:''108.00''), (query:48622..48720, target:SWISS-PROT::P98164:3544..3512, score:''94.00''), (query:48595..48708, target:SWISS-PROT::P98164:3720..3683, score:''86.00''), (query:47701..47814, target:SWISS-PROT::P98164:2817..2780, score:''90.00''), (query:47692..47799, target:SWISS-PROT::P98164:3674..3639, score:''60.00''), (query:47217..47366, target:SWISS-PROT::P98164:3716..3667, score:''96.00''), (query:46543..46647, target:SWISS-PROT::P98164:1101..1067, score:''107.00''), (query:46552..46656, target:SWISS-PROT::P98164:3873..3839, score:''84.00''), (query:45989..46126, target:SWISS-PROT::P98164:3832..3787, score:''98.00''), (query:45149..45274, target:SWISS-PROT::P98164:2775..2734, score:''99.00''), (query:44780..44893, target:SWISS-PROT::P98164:268..231, score:''76.00''), (query:44813..44905, target:SWISS-PROT::P98164:1223..1193, score:''73.00''), (query:44251..44361, target:SWISS-PROT::P98164:3630..3594, score:''119.00''), (query:43602..43700, target:SWISS-PROT::P98164:179..147, score:''97.00''), (query:43674..43781, target:SWISS-PROT::P98164:191..156, score:''90.00''), (query:43584..43685, target:SWISS-PROT::P98164:1107..1074, score:''89.00''), (query:42758..42865, target:SWISS-PROT::P98164:1264..1229, score:''79.00''), (query:42204..42413, target:SWISS-PROT::P98164:2810..2741, score:''136.00''), (query:42189..42377, target:SWISS-PROT::P98164:3027..2965, score:''125.00''), (query:42186..42293, target:SWISS-PROT::P98164:3110..3075, score:''109.00''), (query:42198..42389, target:SWISS-PROT::P98164:3584..3521, score:''137.00''), (query:42309..42422, target:SWISS-PROT::P98164:3793..3756, score:''95.00''), (query:39654..39791, target:SWISS-PROT::P98164:63..18, score:''132.00''), (query:39786..40049, target:SWISS-PROT::P98164:1183..1096, score:''230.00''), (query:39657..39890, target:SWISS-PROT::P98164:3109..3032, score:''200.00''), (query:39780..39983, target:SWISS-PROT::P98164:3756..3689, score:''194.00''), (query:39618..39761, target:SWISS-PROT::P98164:3845..3798, score:''105.00''), (query:39651..39779, target:SWISS-PROT::P98164:3964..3922, score:''128.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''GM06086.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM06086 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:50852..51290, target:EMBL::AA802674:672..234, score:''2195.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''SD04592.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD04592 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:37280..37708, target:EMBL::AI532939:429..1, score:''2136.00''), (query:37097..37217, target:EMBL::AI532939:545..425, score:''569.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''GH03622.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH03622 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:36446..37075, target:EMBL::AI063674:1..630, score:''3150.00'')), method:''blastn'', version:''1.4.9''); EST embl|AA802674|AA802674 comes from the 5' UTR"] Key: protein_id, Value: ['CAB72286.1'] Key: translation, Value: ['MLLLQLLLQLLLLGKLLLGKTPPTVFGFRLLFAAFRFPLSLHFPHRMHDHFFVRGDTHSCGWKNSTTFTIRISAIYRYLNQCQANEFRCNNGDCIDARKRCNNVSDCSEGEDENEECPAACSGMEYQCRDGTRCISVSQQCDGHSDCSDGDDEEHCDGIVPKLRYTCPKGKFTCRDLSCISIVHRCDGRADCPNDRSDEEGCPCLYDKWQCDDGTCIAKELLCNGNIDCPEDISDERYCEGGYDSEECRFDEFHCGTGECIPMRQVCDNIYDCNDYSDEVNCVEGEEEDRVGIPIGHQPWRPASKHDDWLHEMDTSEYQVYQPSNVYEKANSQNPCASNQFRCTTSNVCIPLHLRCDGFYHCNDMSDEKSCEQYQRHTTTRRPLTLATPTSRITTQGPGLLERRNTTTATEASRWPWATKTTTIATTTSNPITTVGVANSPPQTCLENIEFACHNRDCISIESVCDGIPDCGRNEDEDDALCKCSGDKYKCQRGGGCIPKSQVCDGKPQCHDRSDESACHLHGRLNKTRLGVKCLESQYQCGDGSCISGYKRCNGIHDCADASDEYNCIYDYEDTYDTDPNNNPLNECDILEFECDYSQCLPLEKKCDGYADCEDMSDELECQSYTDHCLESEFECDSYCLPRDQLCNGIPNCQDGSDERNCTFCREDAYLCNTGECVADNQRCNGIADCADGSDERHCARIYCPPNKLACNGTCVSRRIKCDGIRDCLDGYDEMYCPETNNHYPTQNVNVIRPKLGPNPIPKSCRPHEWQCANLECIDSSLQCNEIKDCSDGSDEELSVCFGTATTRLKPSDCSPEQFYCDESCYNRSVRCNGHVDCSDGSDEVGCSLPCPQHQCPSGRCYTESERCDRHRHCEDGSDEANCTAILCKDNEFLCFDRQFCINATQQCDGYYDCRDFSDEQNCIGCYANQFRCNNGDCVSGSAPCNGYSECSDHSDELNCGGTQECLPNQFRCNSGQCVSSSVRCNGRTDCQDSSDEQNCGHRHTEVSQGLETTGVFTTSTTSTTAMTPLRIICPPTSFKCENGPCISLGLKCNGRVDCPYDGSDEADCGQISNDIDPADSNDRRPNQLNLKTYPDSQIIKESREVIFRCRDEGPARAKVKWSRPGGRPLPPGFTDRNGRLEIPNIRVEDAGTYVCEAVGYASYIPGQQVTVNLNVERSWGENKYEEIRSNRIRYGTVPHIDLEFFGLDNDVGSRPESACTEYQATCMNGECIDKSSICDGNPDCSDASDEQSCSLGLKCQPNQFMCSNSKCVDRTWRCDGENDCGDNSDETSCDPEPSGAPCRYNEFQCRSGHCIPKSFQCDNVPDCTDGTDEVGCMAPLPIRPPPQSVSLLEYEVLELTCVATGTPTPTIVWRLNWGHVPDKCESKSYGGTGTLRCPDMRPQDSGAYSCEIINTRGTHFVNPDTIVTVRPVRTDVCEAGFFNMLARKAEECVQCFCFGVAKACDSANLFTYAIHPPILSHRVVSVELSPLRQIVINEAAPGQDLLTLLHGVQFRATNVHFSGRETPYLALPADYMGNQLKSYGGNLRYEVNYRGSGRPVNGPDVIITGNRFTLTYRVRTQPGQNNRVSIPFVPGGWQKPDGRKASREEIMMILANVDNILIRLGYLDSTAREVDLINIALDSAGTADKGLGSASLVEKCQCPPGYVGDSCESCASGYVRQPGGPWLGHCVPFIPDSCPSGTYGDPRRGVPCKECPCPLTGSNNFASGCQQSPDGDVVCRCNEGYTGRRCEQCAAGYQGNPLAAGGICRRIPDTSCNVDGTYSVHSNGTCQCKDSVIGEQCDTCKSKSFHLNSFTYTGCIECFCSGVGLDCDSSTWYRDQVTSTFGRSRVDHGFVLVTNYMQPTPDTVPVSMAAEPNALSFIGSADQSGNTLYWSLPAAFLGNKLSSYGGKLTYTLSYSPLPNGIMSRNSAPDVVIKSGEDLRLIHYRKSQVVPSVANTYSVEIKESAWQRGDEVVANREHVLMALSDITAIYIKATYTTSTKEASLRQVTLDVATPTNLGTPRAVEVEQCRCPEGYLGLSCEQCAPGYARDPEGGIYLGLCRPCECNGHSKYCNSDTGDCEECSDNTEGPSCERCAAGYVGDATRGTIYDCQPDEGYPIPSPPAPGNQTLECTAYCQIEGIYDCRGNECLCKRNVIGDQCDQCRPGTYGLSAQNQDGCKECYCSGLASQCRSAALYRQLIPVDFILNAPLITDESGAVQDTENLIPDISRNMYTYTHTSYLPKYWSLRGSVLGNQLFSYGGRLSYSLIVESYGNYERGHDIVLIGNGLKLIWSRPDGNENQEEYNVRLHEDEQWTRQDRESARPASRSDFMTVLSDLQHILIRATPRVPTQSTSIGNVILESAVTTRTPGATHASDIELCQCPSGYVGTSCESCAPLHYRDASGSCSLCPCDVSNTESCDLVSGGYVECRCKARWKGDRCREIGE'] type: gene location: [70719:75241](-) qualifiers: Key: gene, Value: ['EG:BACR25B3.2'] type: CDS location: join{[75216:75241](-), [73085:73559](-), [72838:73016](-), [72604:72768](-), [71423:71621](-), [70719:70988](-)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6946672'] Key: gene, Value: ['EG:BACR25B3.2'] Key: note, Value: ["/prediction=(method:''genefinder'', version:''084'', score:''41.82''); /prediction=(method:''genscan'', version:''1.0'')"] Key: protein_id, Value: ['CAB72287.1'] Key: translation, Value: ['MANSKVVAHDESLQGINDSEWQLMGDDIDDGLLDDVDETLKPMETKSEEEDLPTGNWFSQSVHRVRRSINRLFGSDDNQERGRRQQRERSQRNRDAINRQKELRRRQKEDHNRWKQMRMERQLEKQRLVKRTNHVVFNRATDPRKRASDLYDENEASGYHEEDTTLYRTYFVVNEPYDNEYRDRESVQFQNLQKLLDDDLRNFFHSNYEGNDDEEQEIRSTLERVEPTNDNFKIRVQLRIELPTSVNDFGSKLQQQLNVYNRIENLSAATDGVFSFTESSDIEEEAIDVTLPQEEVEGSGSDDSSCRGDATFTCPRSGKTICDEMRCDREIQCPDGEDEEYCNYPNVCTEDQFKCDDKCLELKKRCDGSIDCLDQTDEAGCINAPEPEPEPEPEPEPEPESEPEAEPEPEPEPEPESEPEQEPEPQVPEANGKFY'] type: gene location: [121866:127124](+) qualifiers: Key: gene, Value: ['EG:BACR25B3.3'] type: CDS location: join{[121866:122046](+), [122173:122630](+), [123671:123823](+), [124062:124320](+), [124391:124688](+), [124754:125018](+), [125093:125254](+), [125316:125576](+), [126792:127124](+)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6946673'] Key: gene, Value: ['EG:BACR25B3.3'] Key: note, Value: ["/prediction=(method:''genscan'', version:''1.0'', score:''174.91''); /prediction=(method:''genefinder'', version:''084''); /match=(desc:''PROBABLE G PROTEIN-COUPLED RECEPTOR C13B9.4 IN CHROMOSOME III'', species:''Caenorhabditis elegans'', ranges:(query:123671..123775, target:SWISS-PROT::Q09460:107..141, score:''80.00''), (query:123743..123829, target:SWISS-PROT::Q09460:235..263, score:''72.00''), (query:124072..124332, target:SWISS-PROT::Q09460:265..351, score:''161.00''), (query:124392..124691, target:SWISS-PROT::Q09460:349..448, score:''206.00''), (query:124755..124958, target:SWISS-PROT::Q09460:448..515, score:''123.00''), (query:124764..125027, target:SWISS-PROT::Q09460:454..541, score:''108.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''CALCITONIN RECEPTOR PRECURSOR (CT-R)'', species:''Sus scrofa (Pig)'', ranges:(query:124165..124236, target:SWISS-PROT::P25117:191..214, score:''54.00''), (query:124392..124580, target:SWISS-PROT::P25117:233..295, score:''118.00''), (query:124725..124886, target:SWISS-PROT::P25117:318..371, score:''127.00'')), method:''blastx'', version:''1.4.9'')"] Key: protein_id, Value: ['CAB72288.1'] Key: translation, Value: ['MGAGNRKSETKTKTEAEIEIEMERDQFSIAANACMSMGPMLISKDKAPCSGGRVRHADSLHIYYAVDGKMTLLSNILDCGGCISAQRFTRLLRQSGSSGPSPSAPTAGTFESKSMLEPTSSHSLATGRVPLLHDFDASTTESPGTYVLDGVARVAQLALEPTVMDALPDSDTEQVLGNLNSSAPWNLTLASAAATNFENCSALFVNYTLPQTEFAIRKCELDGRWGSRPNATEVNPPGWTDYGPCYKPEIIRLMQQMGSKDFDAYIDIARRTRTLEIVGLCLSLFALIVSLLIFCTFRSLRNNRTKIHKNLFVAMVLQVIIRLTLYLDQFRRGNKEAATNTSLSVIENTPYLCEASYVLLEYARTAMFMWMFIEGLYLHNMVTVAVFQGSFPLKFFSRLGWCVPILMTTVWARCTVMYMDTSLGECLWNYNLTPYYWILEGPRLAVILLNFCFLVNIIRVLVMKLRQSQASDIEQTRKAVRAAIVLLPLLGITNLLHQLAPLKTATNFAVWSYGTHFLTSFQGFFIALIYCFLNGEVRAVLLKSLATQLSVRGHPEWAPKRASMYSGAYNTAPDTDAVQPAGDPSATGKRISPPNKRLNGRKPSSASIVMIHEPQQRQRLMPRLQNKAREKGKDRVEKTDAEAEPDPTISHIHSKEAGSARSRTRGSKWIMGICFRGQMCDAGLAKDAANIHDVANAADVDACSGSNNNYHNINNNNGSQNNNSIHCNHRDDDKVKGESQSDFKEPSNTNAESLVHLALFTAHTSNTQNNTHRNTIFTPIRRRNCS'] type: gene location: [128488:129414](-) qualifiers: Key: gene, Value: ['EG:BACR25B3.4'] type: CDS location: join{[129373:129414](-), [129195:129313](-), [128776:129140](-), [128488:128715](-)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6946674'] Key: gene, Value: ['EG:BACR25B3.4'] Key: note, Value: ["/prediction=(method:''genefinder'', version:''084'', score:''61.35''); /prediction=(method:''genscan'', version:''1.0''); /match=(desc:''VACUOLAR PROTON-ATPASE SUBUNIT D'', species:''Oryctolagus cuniculus (Rabbit)'', ranges:(query:129190..129324, target:SPTREMBL::O97755:55..11, score:''130.00''), (query:128778..129176, target:SPTREMBL::O97755:174..42, score:''472.00''), (query:128546..128716, target:SPTREMBL::O97755:231..175, score:''169.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''VACUOLAR ATP SYNTHASE SUBUNIT D (EC 3.6.1.34) (V-ATPASE D SUBUNIT) (V- ATPASE 28 KD ACCESSORY PROTEIN)'', species:''Bos taurus (Bovine)'', ranges:(query:129190..129324, target:SWISS-PROT::P39942:55..11, score:''130.00''), (query:128778..129176, target:SWISS-PROT::P39942:174..42, score:''471.00''), (query:128546..128716, target:SWISS-PROT::P39942:231..175, score:''173.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''GH28048.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH28048 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:129196..129317, target:EMBL::AI517334:233..112, score:''412.00''), (query:128777..129145, target:EMBL::AI517334:597..229, score:''1251.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''GH07112.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH07112 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:129196..129317, target:EMBL::AI108302:223..102, score:''412.00''), (query:128777..129145, target:EMBL::AI108302:587..219, score:''1251.00''), (query:128636..128716, target:EMBL::AI108302:667..587, score:''243.00'')), method:''blastn'', version:''1.4.9'')"] Key: protein_id, Value: ['CAB72289.1'] Key: translation, Value: ['MAAKDRLPIFPSRGAQTLMKSRLAGATKGHGLLKKKADALQMRFRLILGKIIETKTLMGQVMKEAAFSLAEVKFTTGDINQIVLQNVTKAQIKIRTKKDNVAGVTLPIFEPYTDGVDTYELAGLARGGQQLAKLKKNYQSAVRLLVQLASLQTSFVTLDDVIKVTNRRVNAIEHVIIPRINRTIEYIISELDELEREEFYRLKKIQDKKREARKASDKLRAEQRLLGQMAEAQEVQNILDEDGDEDLLF'] type: gene location: [132239:132926](+) qualifiers: Key: gene, Value: ['EG:BACR25B3.5'] type: CDS location: [132239:132926](+) qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6946675'] Key: gene, Value: ['EG:BACR25B3.5'] Key: note, Value: ["/prediction=(method:''genefinder'', version:''084'', score:''48.06''); /prediction=(method:''genscan'', version:''1.0'', score:''132.90''); /match=(desc:''N-ACETYLTRANSFERASE'', species:''Drosophila melanogaster (Fruit fly)'', ranges:(query:132249..132326, target:SPTREMBL::Q94521:60..85, score:''64.00''), (query:132600..132842, target:SPTREMBL::Q94521:171..251, score:''105.00'')), method:''blastx'', version:''1.4.9''); EST embl|AI063093|AI063093 comes from the 3' UTR"] Key: protein_id, Value: ['CAB72290.1'] Key: translation, Value: ['MEYKMIAPEHSEQVMEHLRRNFFADEPLNKAAGLCQNGSSCPALEAHCAEAIQHRMSVMAVDAKEKDTLKIVGVVLNGILKPGDTAKALSKLDCNDDADFRKIFDLLHRHNLKHNLFEHFDVDCMFDVRILSVDSCYRGQGIANELVKRSVAVAKKNGFRLLKADATGIFSQKIFRSHGFEVFSEQPYSKYTDENGKVILPVEAPHIKLQQLYKAICADDQDEKKQSL'] type: gene location: [133491:134407](-) qualifiers: Key: gene, Value: ['EG:BACR25B3.6'] type: CDS location: join{[134197:134407](-), [133866:134135](-), [133662:133748](-), [133491:133595](-)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6946676'] Key: gene, Value: ['EG:BACR25B3.6'] Key: note, Value: ["/prediction=(method:''genscan'', version:''1.0'', score:''119.22''); /prediction=(method:''genefinder'', version:''084''); /match=(desc:''LD41675.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD41675 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:134192..134531, target:EMBL::AI515958:340..1, score:''1691.00''), (query:133879..134139, target:EMBL::AI515958:591..331, score:''1305.00'')), method:''blastn'', version:''1.4.9'')"] Key: protein_id, Value: ['CAB72291.1'] Key: translation, Value: ['MNGLPPSKHYNLTHYQQRYNWDCGLSCIIMILSAQQREQLLGNFDAVCGEEGFGSSTWTIDLCYLLMRYQVRHEYFTQTLGIDPNYAQHTYYSKIIDKDERRVTRKFKDARAHGLRVEQRTVDMEVILRHLARHGPVILLTNASLLTCEVCKRNVLEKFGYAGHYVVLCGYDMAAQKLFYHNPEVHDGHICRCLIESMDTARRAYGTDEDIIFIYEKKETRE'] type: gene location: [135478:136829](+) qualifiers: Key: gene, Value: ['EG:BACR25B3.7'] type: CDS location: join{[135478:135749](+), [135960:136586](+), [136640:136829](+)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6946677'] Key: gene, Value: ['EG:BACR25B3.7'] Key: note, Value: ["/prediction=(method:''genefinder'', version:''084'', score:''66.07''); /prediction=(method:''genscan'', version:''1.0'', score:''145.64''); /match=(desc:''HYPOTHETICAL 40.4 KD TRP-ASP REPEATS CONTAINING PROTEIN C14B1.4 IN CHROMOSOME III'', species:''Caenorhabditis elegans'', ranges:(query:135548..135748, target:SWISS-PROT::Q17963:39..105, score:''120.00''), (query:135957..136586, target:SWISS-PROT::Q17963:105..314, score:''899.00''), (query:136641..136823, target:SWISS-PROT::Q17963:315..375, score:''219.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''LD30385.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD30385 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:135288..135749, target:EMBL::AA950546:102..563, score:''2301.00''), (query:135956..136047, target:EMBL::AA950546:559..650, score:''442.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''LD10938.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD10938 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:136108..136288, target:EMBL::AA392005:776..596, score:''212.00'')), method:''blastn'', version:''1.4.9'')"] Key: protein_id, Value: ['CAB72292.1'] Key: translation, Value: ['MVPIGAVHGGHPGVVHPPQQPLPTAPSGPNSLQPNSVGQPGATTSSNSSASNKSSLSVKPNYTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPTENIIASAALENDKTIKLWKSDT'] type: gene location: [145402:147087](+) qualifiers: Key: gene, Value: ['EG:BACR25B3.8'] type: CDS location: join{[145402:146203](+), [146514:147087](+)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6946678'] Key: gene, Value: ['EG:BACR25B3.8'] Key: protein_id, Value: ['CAB72293.1'] Key: translation, Value: ['MNSTTKHLLHCTLLITVIVTFEVFSGGIKIDENSFTLVDPWTEYGQLATVLLYLLRFLTLLTLPQVLFNFCGLVFYNAFPEKVVLKGSPLLAPFICIRVVTRGDFPDLVKTNVLRNMNTCLDTGLENFLIEVVTDKAVNLSQHRRIREIVVPKEYKTRTGALFKSRALQYCLEDNVNVLNDSDWIVHLDEETLLTENSVRGIINFVLDGKHPFGQGLITYANENVVNWLTTLADSFRVSDDMGKLRLQFKLFHKPLFSWKGSYVVTQVSAERSVSFDNGIDGSVAEDCFFAMRAFSQGYTFNFIEGEMYEKSPFTLLDFLQQRKRWLQGILLVVHSKMIPFKHKLLLGISVYSWVTMPLSTSNIIFAALYPIPCPNLVDFVCAFIAAINIYMYVFGVIKSFSLYRFGLFRFLACVLGAVCTIPVNVVIENVAVIWGLVGKKHKFYVVQKDVRVLETV'] type: gene location: [148859:152785](-) qualifiers: Key: gene, Value: ['EG:BACR25B3.9'] type: CDS location: join{[152105:152785](-), [151880:152032](-), [149545:151809](-), [148965:149462](-), [148859:148905](-)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6946679'] Key: gene, Value: ['EG:BACR25B3.9'] Key: note, Value: ["/prediction=(method:''genscan'', version:''1.0''); /prediction=(method:''genefinder'', version:''084''); /match=(desc:''HYPOTHETICAL 135.8 KD PROTEIN'', species:''Drosophila melanogaster (Fruit fly)'', ranges:(query:152096..152785, target:SPTREMBL::Q9XZ29:230..1, score:''1147.00''), (query:151882..152043, target:SPTREMBL::Q9XZ29:277..224, score:''250.00''), (query:149546..151816, target:SPTREMBL::Q9XZ29:1032..276, score:''3735.00''), (query:148953..149465, target:SPTREMBL::Q9XZ29:1202..1032, score:''890.00''), (query:148863..148907, target:SPTREMBL::Q9XZ29:1212..1198, score:''76.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''LD21815.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD21815 5prime similar to L19117: Drosophila melanogaster (chromosome X 3A6-8) kinesin-like protein of 3A (klp3A) mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:152482..152787, target:EMBL::AA816942:460..155, score:''1485.00''), (query:152401..152483, target:EMBL::AA816942:540..458, score:''397.00'')), method:''blastn'', version:''1.4.9'')"] Key: protein_id, Value: ['CAB72294.1'] Key: translation, Value: ['MSSEDPSCVAVALRVRPLVQSELDRGCRIAVERSADGAPQVTVNRNESYTYNYVFDIDDSQKDLFETCVQAKVKKLLNGYNVTILAYGQTGSGKTYTMGTAFNGVLDDHVGVIPRAVHDIFTAIAEMQSEFRFAVTCSFVELYQEQFYDLFSSKTRDKATVDIREVKNRIIMPGLTELVVTSAQQVTDHLIRGSAGRAVAATAMNETSSRSHAIFTLTLVATKLDGKQSVTTSRFNLVDLAGSERCSKTLASGDRFKEGVNINKGLLALGNVINALGSGQAAGYIPYRQSKLTRLLQDSLGGNSITLMIACVSPADYNVAETLSTLRYADRALQIKNKPVVNLDPHAAEVNMLKDVIQKLRVELLSGGKMSSSLISAVGAAGLGAIPCEESLAGSMANAAEIQRLKEQVRTLQDRNRKLQQELHQSLLDLTEKEMRAHIAEQAHDKLRSHVSELKNKLDQREQAQFGNENTNGDNEMRDFSLLVNRVHVELQRTQEELESQGHESRQRLSSRSHTEGGESGGDEVHEMLHSHSEEYTNKQMNFAGELRNINRQLDLKQELHERIMRNFSRLDSDDEDVKLRLCNQKIDDLEAERRDLMDQLRNIKSKDISAKLAEERRKRLQLLEQEISDLRRKLITQANLLKIRDKEREKIQNLSTEIRTMKESKVKLIRAMRGESEKFRQWKMVREKELTQLKSKDRKMQSEIVRQQTLHSKQRQVLKRKCEEALAANKRLKDALERQASAQAQRHKYKDNGGSAAGSSNANAKTDSWVDRELEIILSLIDAEHSLEQLMEDRAVINNHYHLLQQEKTSDPAEAAEQARILASLEEELEMRNAQISDLQQKVCPTDLDSRIRSLAEGVQSLGESRTVSKQLLKTLVQQRRLQASSLNEQRTTLDELRAQLLDAQQQEDAASKRLRLLQSQHEEQMLAQQRAYEEKVSVLIRTANQRWAEARSPAEDQQRNQILEELLSSREALQQELDKLRAKNKSKSKAVKSEPQDLDDSFQIVDGNETVVLSDVSDDPDWVPSTSKSKRIQSDSRNVISPPEKQDANVTSLGNSSIQSLNSTSATEDGKRCKGCKCRTKCTTKRCGCLSGNNACSETCVCKSNCRNPLNLKDHASQCGDGDGQKDETEDADKSDDDGDDEPQTSKENAVKFVTPEAPGKVVASPKQTLQEPKAAATPLMNSNVVEDINGPKLAKMSGLAFDTPKRKFF'] type: gene location: join{[153489:154269](+), AL121804.2[40:610](+), AL121804.2[671:1487](+)} qualifiers: Key: gene, Value: ['EG:BACR7C10.3'] type: CDS location: join{[153489:154269](+), AL121804.2[40:610](+), AL121804.2[671:1487](+)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:6946680'] Key: gene, Value: ['EG:BACR7C10.3'] Key: protein_id, Value: ['CAB72295.1'] Key: translation, Value: ['MEEEAPRFNVLEEAFNGNGNGCANVEATQSAILKVLTRVNRFQMRVRKHIEDNYTEFLPNNTSPDIFLEESGSLNREIHDMLENLGSEGLDALDEANVKMAGNGRQLREILLGLGVSEHVLRIDELFQCVEEAKATKDYLVLLDLVGRLRAFIYGDDSVDGDAQVATPEVRRIFKALECYETIKVKYHVQAYMLQQSLQERFDRLVQLQCKSFPTSRCVTLQVSRDQTQLQDIVQALFQEPYNPARLAEFLLDNCIEPVIMRPVMADYSEEADGGTYVRLSLSYATKEPSSAHVRPNYKQVLENLRLLLHTLAGINCSVSRDQHVFGIIGDHVKDKMLKLLVDECLIPAVPESTEEYQTSTLCEDVAQLEQLLVDSFIINPEQDRALGQFVEKYETYYRNRMYRRVLETAREIIQRDLQDMVLVAPNNHSAEVANDPFLFPRCMISKSAQDFVKLMDRILRQPTDKLGDQEADPIAGVISIMLHTYINEVPKVHRKLLESIPQQAVLFHNNCMFFTHWVAQHANKGIESLAALAKTLQATGQQHFRVQVDYQSSILMGIMQEFEFESTHTLGSGPLKLVRQCLRQLELLKNVWANVLPETVYNATFCELINTFVAELIRRVFTLRHISAQMACELSDLIDVVLQRAPTLFREPNEVVQVLSWLKLQQLKAMLNASLMEITELWGDGVGPLTASYKSDEIKHLIRALFQDTDWRAKAITQIV'] DB cross refs [] ***Record from one_of.gb with the FeatureParser Seq: Seq('GAATTCAGATAGAATGTAGACAAGAGGGATGGTGAGGAAAACCTACGGCAAGCA...GGC', IUPACAmbiguousDNA()) Id: U18266.1 Name: HSTMPO1 Description Human thymopoietin (TMPO) gene, exon 1. Annotations*** Key: accessions Value: ['U18266'] Key: data_file_division Value: PRI Key: date Value: 01-JUL-1995 Key: gi Value: 885676 Key: keywords Value: [''] Key: organism Value: Homo sapiens References* location: [0:2509] authors: Harris,C.A., Andryuk,P.J., Cline,S.W., Siekierka,J.J. and Goldstein,G. title: Structure and mapping of the human thymopoietin (TMPO) gene and relationship of TMPO beta to rat lamin-associated polypeptide 2 journal: Unpublished medline id: pubmed id: comment: location: [0:2509] authors: Harris,C.A. title: Direct Submission journal: Submitted (07-DEC-1994) Crafford A. Harris, Immunobiology Research Institute, Route 22 East, Annandale, NJ 08801-0999, USA medline id: pubmed id: comment: Key: segment Value: 1 of 6 Key: sequence_version Value: 1 Key: source Value: human Key: taxonomy Value: ['Eukaryota', 'Metazoa', 'Chordata', 'Craniata', 'Vertebrata', 'Euteleostomi', 'Mammalia', 'Eutheria', 'Primates', 'Catarrhini', 'Hominidae', 'Homo'] Features type: source location: [0:2509](+) qualifiers: Key: chromosome, Value: ['12'] Key: clone, Value: ['P1.516 (DMPC-HFFno.1B-0943F)'] Key: clone_lib, Value: ['DuPont Merck Hum Fibroblast P1 Library no.1 Series B (compressed) (Genome Systems Inc)'] Key: db_xref, Value: ['taxon:9606'] Key: map, Value: ['12q22; 64% (% distance from centromere to telomere)'] Key: organism, Value: ['Homo sapiens'] type: 5'UTR location: [one-of(1887,1900):2200](+) qualifiers: Key: gene, Value: ['TMPO'] type: gene location: join{[1887:2509](+), U18267.1[0:270](+), U18268.1[0:309](+), U18270.1[0:6905](+), U18269.1[0:128](+), U18271.1[0:3234](+)} qualifiers: Key: gene, Value: ['TMPO'] type: exon location: [one-of(1887,1900):2479](+) qualifiers: Key: gene, Value: ['TMPO'] Key: number, Value: ['1'] type: CDS location: join{[2200:2479](+), U18267.1[119:246](+), U18268.1[129:288](+), U18270.1[4690:4788](+), U18269.1[81:>128](+)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:885684'] Key: gene, Value: ['TMPO'] Key: product, Value: ['thymopoietin beta'] Key: protein_id, Value: ['AAB60434.1'] Key: translation, Value: ['MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQSYSQAGITETEWTSGS'] type: CDS location: join{[2200:2479](+), U18267.1[119:246](+), U18268.1[129:288](+), U18270.1[38:1558](+)} qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:885683'] Key: gene, Value: ['TMPO'] Key: product, Value: ['thymopoietin alpha'] Key: protein_id, Value: ['AAB60433.1'] Key: translation, Value: ['MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEGKKKEHKKVKSTRDIVPFSELGTTPSGGGFFQGISFPEISTRPPLGSTELQAAKKVHTSKGDLPREPLVATNLPGRGQLQKLASERNLFISCKSSHDRCLEKSSSSSSQPEHSAMLVSTAASPSLIKETTTGYYKDIVENICGREKSGIQPLCPERSHISDQSPLSSKRKALEESESSQLISPPLAQAIRDYVNSLLVQGGVGSLPGTSNSMPPLDVENIQKRIDQSKFQETEFLSPPRKVPRLSEKSVEERDSGSFVAFQNIPGSELMSSFAKTVVSHSLTTLGLEVAKQSQHDKIDASELSFPFHESILKVIEEEWQQVDRQLPSLACKYPVSSREATQILSVPKVDDEILGFISEATPLGGIQAASTESCNQQLDLALCRAYEAAASALQIATHTAFVAKAMQADISEAAQILSSDPSRTHQALGILSKTYDAASYICEAAFDEVKMAAHTMGNATVGRRYLWLKDCKINLASKNKLASTPFKGGTLFGGEVCKVIKKRGNKH'] DB cross refs [] ***Record from NT_019265.gb with the FeatureParser Seq: UnknownSeq(1250660, alphabet = IUPACAmbiguousDNA(), character = 'N') Id: NT_019265.6 Name: NT_019265 Description Homo sapiens chromosome 1 working draft sequence segment. Annotations*** Key: accessions Value: ['NT_019265'] Key: comment Value: GENOME ANNOTATION REFSEQ: NCBI contigs are derived from assembled genomic sequence data. They may include both draft and finished sequence. On Oct 16, 2001 this sequence version replaced gi:15294341. COMPLETENESS: not full length. Key: contig Value: join(AL391218.9:105173..108462,gap(100),complement(AL512330.12:1..182490),complement(AL590128.4:9034..81287),gap(100),AL591163.7:85799..94832,gap(100),AL591163.7:94933..113245,gap(100),AL591163.7:42173..44897,complement(AL590128.4:1..6208),AL591163.7:51307..52779,gap(100),AL591163.7:52880..85698,gap(100),AL591163.7:113346..126143,complement(AL159177.12:184729..186047),AL031447.4:1..112158,complement(AL159177.12:1..72671),complement(AL591866.12:23507..86371),AL031848.11:1..142965,AL031847.17:1..166418,AL035406.25:1..161651,complement(AL356261.20:94599..98345),complement(AC026968.3:54432..54579),gap(100),complement(AC062024.2:98529..107911),gap(100),AC062024.2:7713..11594,gap(100),complement(AL356261.20:1..94498),complement(AL356693.18:19988..70853),gap(100),AL356693.18:17351..19887,gap(100),complement(AL356693.18:3037..17250),gap(100),complement(AL356693.18:1..2936),gap(100),AC026968.3:675..2393,gap(100),AC026968.3:1..574,gap(100),AL356261.20:179029..182233) Key: data_file_division Value: CON Key: date Value: 16-OCT-2001 Key: gi Value: 16156830 Key: keywords Value: [''] Key: organism Value: Homo sapiens References* location: [0:1250660] authors: NCBI Annotation Project. title: Direct Submission journal: Submitted (11-OCT-2001) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA medline id: pubmed id: comment: Key: sequence_version Value: 6 Key: source Value: human Key: taxonomy Value: ['Eukaryota', 'Metazoa', 'Chordata', 'Craniata', 'Vertebrata', 'Euteleostomi', 'Mammalia', 'Eutheria', 'Primates', 'Catarrhini', 'Hominidae', 'Homo'] Features type: source location: [0:1250660](+) qualifiers: Key: chromosome, Value: ['1'] Key: db_xref, Value: ['taxon:9606'] Key: organism, Value: ['Homo sapiens'] type: source location: [0:3290](+) qualifiers: Key: clone, Value: ['RP11-13G5'] Key: db_xref, Value: ['taxon:9606'] Key: note, Value: ['Accession AL391218 sequenced by The Sanger Centre'] Key: organism, Value: ['Homo sapiens'] type: misc_feature location: [215901:365470](+) qualifiers: Key: note, Value: ['FISH-mapped clone'] Key: standard_name, Value: ['RP11-242F24'] type: variation location: [217507:217508](+) qualifiers: Key: allele, Value: ['T', 'C'] Key: db_xref, Value: ['dbSNP:811400'] type: mRNA location: join{[342429:342515](+), [363170:363300](+), [365740:365814](+), [376397:376499](+), [390168:390297](+), [391256:391379](+), [392605:392679](+), [398229:398419](+), [399081:399167](+), [399533:399650](+), [405843:405913](+), [406703:406761](+), [406867:407010](+), [407961:408091](+), [408507:409092](+)} qualifiers: Key: db_xref, Value: ['LocusID:55735'] Key: gene, Value: ['FLJ10737'] Key: product, Value: ['hypothetical protein FLJ10737'] Key: transcript_id, Value: ['XM_057697.1'] DB cross refs [] ***Record from origin_line.gb with the FeatureParser Seq: Seq('TTAATTAACTGTCTTCGATTGCGTTTAATTGACGGTTTTCGATTAAAAGCGGTA...CGC', IUPACAmbiguousDNA()) Id: NC_002678.1 Name: NC_002678 Description Mesorhizobium loti, complete genome (edited). Annotations*** Key: accessions Value: ['NC_002678'] Key: data_file_division Value: BCT Key: date Value: 28-MAR-2001 Key: gi Value: 13470324 Key: keywords Value: [''] Key: organism Value: Mesorhizobium loti References* authors: Kaneko,T., Nakamura,Y., Sato,S., Asamizu,E., Kato,T., Sasamoto,S., Watanabe,A., Idesawa,K., Ishikawa,A., Kawashima,K., Kimura,T., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Mochizuki,Y., Nakayama,S., Nakazaki,N., Shimpo,S., Sugimoto,M., Takeuchi,C., Yamada,M. and Tabata,S. title: Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti journal: DNA Res. 7, 331-338 (2000) medline id: pubmed id: comment: location: [0:180] authors: Kaneko,T. title: Direct Submission journal: Submitted (05-DEC-2000) Takakazu Kaneko, Kazusa DNA Research Institute, The First Laboratory for Plant Gene Research; Yana 1532-3, Kisarazu, Chiba 292-0812, Japan (E-mail:kaneko@kazusa.or.jp, URL:http://www.kazusa.or.jp/rhizobase/, Tel:81-438-52-3935, Fax:81-438-52-3934) medline id: pubmed id: comment: Key: sequence_version Value: 1 Key: source Value: Mesorhizobium loti Key: taxonomy Value: ['Bacteria', 'Proteobacteria', 'alpha subdivision', 'Rhizobiaceae group', 'Phyllobacteriaceae', 'Mesorhizobium'] Key: topology Value: circular Features type: source location: [0:180](+) qualifiers: Key: db_xref, Value: ['taxon:381'] Key: organism, Value: ['Mesorhizobium loti'] Key: strain, Value: ['MAFF303099'] type: gene location: [19:120](+) qualifiers: Key: gene, Value: ['fake'] DB cross refs [] ***Record from blank_seq.gb with the FeatureParser Seq: Seq('MEECWVTEIANGSKDGLDSNPMKDYMILSGPQKTAVAVLCTLLGLLSALENVAV...SDC', IUPACProtein()) Id: NP_001832.1 Name: NP_001832 Description cannabinoid receptor 2 (macrophage) [Homo sapiens]. Annotations*** Key: accessions Value: ['NP_001832'] Key: comment Value: REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from X74328.1. Summary: The cannabinoid delta-9-tetrahydrocannabinol is the principal psychoactive ingredient of marijuana. The proteins encoded by this gene and the cannabinoid receptor 1 (brain) (CNR1) gene have the characteristics of a guanine nucleotide-binding protein (G-protein)-coupled receptor for cannabinoids. They inhibit adenylate cyclase activity in a dose-dependent, stereoselective, and pertussis toxin-sensitive manner. These proteins have been found to be involved in the cannabinoid-induced CNS effects (including alterations in mood and cognition) experienced by users of marijuana. The cannabinoid receptors are members of family 1 of the G-protein-coupled receptors. Key: data_file_division Value: PRI Key: date Value: 18-DEC-2001 Key: db_source Value: REFSEQ: accession NM_001841.1 Key: gi Value: 4502929 Key: keywords Value: [''] Key: organism Value: Homo sapiens Key: pid Value: g4502929 References* location: [0:360] authors: Munro,S., Thomas,K.L. and Abu-Shaar,M. title: Molecular characterization of a peripheral receptor for cannabinoids journal: Nature 365 (6441), 61-65 (1993) medline id: 93368659 pubmed id: 7689702 comment: location: [0:360] authors: Galiegue,S., Mary,S., Marchand,J., Dussossoy,D., Carriere,D., Carayon,P., Bouaboula,M., Shire,D., Le Fur,G. and Casellas,P. title: Expression of central and peripheral cannabinoid receptors in human immune tissues and leukocyte subpopulations journal: Eur. J. Biochem. 232 (1), 54-61 (1995) medline id: 96048028 pubmed id: 7556170 comment: location: [0:360] authors: Shire,D., Calandra,B., Rinaldi-Carmona,M., Oustric,D., Pessegue,B., Bonnin-Cabanne,O., Le Fur,G., Caput,D. and Ferrara,P. title: Molecular cloning, expression and function of the murine CB2 peripheral cannabinoid receptor journal: Biochim. Biophys. Acta 1307 (2), 132-136 (1996) medline id: 96283804 pubmed id: 8679694 comment: Key: sequence_version Value: 1 Key: source Value: human Key: taxonomy Value: ['Eukaryota', 'Metazoa', 'Chordata', 'Craniata', 'Vertebrata', 'Euteleostomi', 'Mammalia', 'Eutheria', 'Primates', 'Catarrhini', 'Hominidae', 'Homo'] Key: topology Value: linear Features type: source location: [0:360] qualifiers: Key: chromosome, Value: ['1'] Key: db_xref, Value: ['taxon:9606'] Key: map, Value: ['1p36.11'] Key: organism, Value: ['Homo sapiens'] type: Protein location: [0:360] qualifiers: Key: product, Value: ['cannabinoid receptor 2 (macrophage)'] type: Region location: [49:299] qualifiers: Key: db_xref, Value: ['CDD:pfam00001'] Key: note, Value: ['7tm_1'] Key: region_name, Value: ['7 transmembrane receptor (rhodopsin family)'] type: CDS location: [0:360] qualifiers: Key: coded_by, Value: ['NM_001841.1:127..1209'] Key: db_xref, Value: ['LocusID:1269', 'MIM:605051'] Key: gene, Value: ['CNR2'] Key: pseudo, Value: [''] DB cross refs [] ***Record from dbsource_wrap.gb with the FeatureParser Seq: Seq('VKDGYIVDDRNCTYFCGRNAYCNEECTKLKGESGYCQWASPYGNACYCYKVPDH...RCN', IUPACProtein()) Id: P01485 Name: SCX3_BUTOC Description Neurotoxin III. Annotations*** Key: accessions Value: ['P01485'] Key: comment Value: [FUNCTION] BINDS TO SODIUM CHANNELS AND INHIBITS THE INACTIVATION OF THE ACTIVATED CHANNELS, THEREBY BLOCKING NEURONAL TRANSMISSION. [SUBCELLULAR LOCATION] SECRETED. [SIMILARITY] BELONGS TO THE ALPHA/BETA-SCORPION TOXIN FAMILY. ALPHA-TOXIN SUBFAMILY. Key: data_file_division Value: INV Key: date Value: 16-OCT-2001 Key: db_source Value: swissprot: locus SCX3_BUTOC, accession P01485; class: standard. created: Jul 21, 1986. sequence updated: Jul 21, 1986. annotation updated: Oct 16, 2001. xrefs: gi: gi: 69530 xrefs (non-sequence databases): HSSP P01484, InterPro IPR003614, InterPro IPR002061, InterPro IPR001219, Pfam PF00537, PRINTS PR00284, ProDom PD000908, SMART SM00505 Key: gi Value: 134354 Key: keywords Value: ['Neurotoxin', 'Sodium channel inhibitor', 'Amidation'] Key: organism Value: Buthus occitanus tunetanus Key: pid Value: g134354 References* location: [0:64] authors: Vargas,O., Gregoire,J., Martin,M.-F., Bechis,G. and Rochat,H. title: Neurotoxins from the venoms of two scorpions: Buthus occitanus tunetanus and Buthus occitanus mardochei journal: Toxicon 20, 79-79 (1982) medline id: pubmed id: comment: SEQUENCE. Key: source Value: Tunisian scorpion Key: taxonomy Value: ['Eukaryota', 'Metazoa', 'Arthropoda', 'Chelicerata', 'Arachnida', 'Scorpiones', 'Buthoidea', 'Buthidae', 'Buthus'] Key: topology Value: linear Features type: source location: [0:64] qualifiers: Key: db_xref, Value: ['taxon:6871'] Key: organism, Value: ['Buthus occitanus tunetanus'] type: Protein location: [0:64] qualifiers: Key: product, Value: ['Neurotoxin III'] type: Bond location: bond{[11:12], [62:63]} qualifiers: Key: bond_type, Value: ['disulfide'] Key: note, Value: ['BY SIMILARITY.'] type: Bond location: bond{[15:16], [35:36]} qualifiers: Key: bond_type, Value: ['disulfide'] Key: note, Value: ['BY SIMILARITY.'] type: Bond location: bond{[21:22], [45:46]} qualifiers: Key: bond_type, Value: ['disulfide'] Key: note, Value: ['BY SIMILARITY.'] type: Bond location: bond{[25:26], [47:48]} qualifiers: Key: bond_type, Value: ['disulfide'] Key: note, Value: ['BY SIMILARITY.'] type: Site location: [63:64] qualifiers: Key: site_type, Value: ['amidation'] DB cross refs [] ***Record from gbvrl1_start.seq with the FeatureParser Seq: Seq('ATGTCTGGCAACCAGTATACTGAGGAAGTTATGGAGGGAGTAAATTGGTTAAAG...TAA', IUPACAmbiguousDNA()) Id: AB000048.1 Name: AB000048 Description Feline panleukopenia virus DNA for nonstructural protein 1, complete cds. Annotations*** Key: accessions Value: ['AB000048'] Key: data_file_division Value: VRL Key: date Value: 05-FEB-1999 Key: gi Value: 1769753 Key: keywords Value: ['nonstructural protein 1'] Key: organism Value: Feline panleukopenia virus References* location: [0:2007] authors: Horiuchi,M. title: Evolutionary pattern of feline panleukopenia virus differs from that of canine parvovirus journal: Unpublished medline id: pubmed id: comment: location: [0:2007] authors: Horiuchi,M. title: Direct Submission journal: Submitted (22-DEC-1996) Motohiro Horiuchi, Obihiro University of Agriculture and Veterinary Medicine, Veterinary Public Health; Inada cho, Obihiro, Hokkaido 080, Japan (E-mail:horiuchi@obihiro.ac.jp, Tel:0155-49-5392, Fax:0155-49-5402) medline id: pubmed id: comment: Key: sequence_version Value: 1 Key: source Value: Feline panleukopenia virus Key: taxonomy Value: ['Viruses', 'ssDNA viruses', 'Parvoviridae', 'Parvovirinae', 'Parvovirus'] Key: topology Value: linear Features type: source location: [0:2007](+) qualifiers: Key: db_xref, Value: ['taxon:10786'] Key: isolate, Value: ['483'] Key: lab_host, Value: ['Felis domesticus'] Key: mol_type, Value: ['genomic DNA'] Key: organism, Value: ['Feline panleukopenia virus'] type: CDS location: [0:2007](+) qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:1769754'] Key: product, Value: ['nonstructural protein 1'] Key: protein_id, Value: ['BAA19009.1'] Key: translation, Value: ['MSGNQYTEEVMEGVNWLKKHAEDEAFSFVFKCDNVQLNGKDVRWNNYTKPIQNEELTSLIRGAQTAMDQTEEEEMDWESEVDSLAKKQVQTFDALIKKCLFEVFVSKNIEPNECVWFIQHEWGKDQGWHCHVLLHSKNLQQATGKWLRRQMNMYWSRWLVTLCSINLTPTEKIKLREIAEDSEWVTILTYRHKQTKKDYVKMVHFGNMIAYYFLTKKKIVHMTKESGYFLSTDSGWKFNFMKYQDRHTVSTLYTEQMKPETVETTVTTAQETKRGRIQTKKEVSIKCTLRDLVSKRVTSPEDWMMLQPDSYIEMMAQPGGENLLKNTLEICTLTLARTKTAFELILEKADNTKLTNFDLANSRTCQIFRMHGWNWIKVCHAIACVLNRQGGKRNTVLFHGPASTGKSIIAQAIAQAVGNVGCYNAANVNFPFNDCTNKNLIWVEEAGNFGQQVNQFKAICSGQTIRIDQKGKGSKQIEPTPVIMTTNENITIVRIGCEERPEHTQPIRDRMLNIKLVCKLPGDFGLVDKEEWPLICAWLVKHGYQSTMANYTHHWGKVPEWDENWAEPKIQEGINSPGCKDLETQAASNPQSQDHVLTPLTPDVVDLALEPWSTPDTPIAETANQQSNQLGVTHKDVQASPTWSEIEADLRAIFTSEQLEEDFRDDLD'] DB cross refs [] ***Record from gbvrl1_start.seq with the FeatureParser Seq: Seq('ATGTCTGGCAACCAGTATACTGAGGAAGTTATGGAGGGAGTAAATTGGTTAAAG...TAA', IUPACAmbiguousDNA()) Id: AB000049.1 Name: AB000049 Description Feline panleukopenia virus DNA for nonstructural protein 1, complete cds. Annotations*** Key: accessions Value: ['AB000049'] Key: data_file_division Value: VRL Key: date Value: 05-FEB-1999 Key: gi Value: 1769755 Key: keywords Value: ['nonstructural protein 1'] Key: organism Value: Feline panleukopenia virus References* location: [0:2007] authors: Horiuchi,M. title: Evolutionary pattern of feline panleukopenia virus differs that of canine parvovirus journal: Unpublished medline id: pubmed id: comment: location: [0:2007] authors: Horiuchi,M. title: Direct Submission journal: Submitted (22-DEC-1996) Motohiro Horiuchi, Obihiro University of Agriculture and Veterinary Medicine, Veterinary Public Health; Inada cho, Obihiro, Hokkaido 080, Japan (E-mail:horiuchi@obihiro.ac.jp, Tel:0155-49-5392, Fax:0155-49-5402) medline id: pubmed id: comment: Key: sequence_version Value: 1 Key: source Value: Feline panleukopenia virus Key: taxonomy Value: ['Viruses', 'ssDNA viruses', 'Parvoviridae', 'Parvovirinae', 'Parvovirus'] Key: topology Value: linear Features type: source location: [0:2007](+) qualifiers: Key: db_xref, Value: ['taxon:10786'] Key: isolate, Value: ['94-1'] Key: lab_host, Value: ['Felis domesticus'] Key: mol_type, Value: ['genomic DNA'] Key: organism, Value: ['Feline panleukopenia virus'] type: CDS location: [0:2007](+) qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:1769756'] Key: product, Value: ['nonstructural protein 1'] Key: protein_id, Value: ['BAA19010.1'] Key: translation, Value: ['MSGNQYTEEVMEGVNWLKKHAEDEAFSFVFKCDNVQLNGKDVRWNNYTKPIQNEELTSLIRGAQTAMDQTEEEEMDWESEVDSLAKKQVQTFDALIKKCLFEVFVSKNIEPNECVWFIQHEWGKDQGWHCHVLLHSKNLQQATGKWLRRQMNMYWSRWLVTLCSINLTPTEKIKLREIAEDSEWVTILTYRHKQTKKDYVKMVHFGNMIAYYFLTKKKIVHMTKESGYFLSTDSGWKFNFMKYQDRHTVSTLYTEQMKPETVETTVTTAQETKRGRIQTKKEVSIKCTLRDLVSKRVTSPEDWMMLQPDSYIEMMAQPGGENLLKNTLEICTLTLARTKTAFELILEKADNTKLTNFDLANSRTCQIFRMHGWNWIKVCHAIACVLNRQGGKRNTVLFHGPASTGKSIIAQAIAQAVGNVGCYNAANVNFPFNDCTNKNLIWVEEAGNFGQQVNQFKAICSGQTIRIDQKGKGSKQIEPTPVIMTTNENITIVRIGCEERPEHTQPIRDRMLNIKLVCKLPGDFGLVDKEEWPLICAWLVKHGYQSTMANYTHHWGKVPEWDENWAEPKIQEGINSPGCKDLETQAASNPQSQDHVLTPLTPDVVDLALEPWSTPDTPIAETANQQSNQLGVTHKDVQASPTWSEIEADLRAIFTSEQLEEDFRDDLD'] DB cross refs [] ***Record from gbvrl1_start.seq with the FeatureParser Seq: Seq('ATGAGTGATGGAGCAGTTCAACCAGACGGTGGTCAACCTGCTGTCAGAAATGAA...TAA', IUPACAmbiguousDNA()) Id: AB000050.1 Name: AB000050 Description Feline panleukopenia virus DNA for capsid protein 2, complete cds. Annotations*** Key: accessions Value: ['AB000050'] Key: data_file_division Value: VRL Key: date Value: 05-FEB-1999 Key: gi Value: 1769757 Key: keywords Value: ['capsid protein 2'] Key: organism Value: Feline panleukopenia virus References* location: [0:1755] authors: Horiuchi,M. title: Evolutionary pattern of feline panleukopenia virus differs from that of canine parvovirus journal: Unpublished medline id: pubmed id: comment: location: [0:1755] authors: Horiuchi,M. title: Direct Submission journal: Submitted (22-DEC-1996) Motohiro Horiuchi, Obihiro University of Agriculture and Veterinary Medicine, Veterinary Public Health; Inada cho, Obihiro, Hokkaido 080, Japan (E-mail:horiuchi@obihiro.ac.jp, Tel:0155-49-5392, Fax:0155-49-5402) medline id: pubmed id: comment: Key: sequence_version Value: 1 Key: source Value: Feline panleukopenia virus Key: taxonomy Value: ['Viruses', 'ssDNA viruses', 'Parvoviridae', 'Parvovirinae', 'Parvovirus'] Key: topology Value: linear Features type: source location: [0:1755](+) qualifiers: Key: db_xref, Value: ['taxon:10786'] Key: isolate, Value: ['94-1'] Key: lab_host, Value: ['Felis domesticus'] Key: mol_type, Value: ['genomic DNA'] Key: organism, Value: ['Feline panleukopenia virus'] type: CDS location: [0:1755](+) qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:1769758'] Key: product, Value: ['capsid protein 2'] Key: protein_id, Value: ['BAA19011.1'] Key: translation, Value: ['MSDGAVQPDGGQPAVRNERATGSGNGSGGGGGGGSGGVGISTGTFNNQTEFKFLENGWVEITANSSRLVHLNMPESENYKRVVVNNMDKTAVKGNMALDDTHVQIVTPWSLVDANAWGVWFNPGDWQLIVNTMSELHLVSFEQEIFNVVLKTVSESATQPPTKVYNNDLTASLMVALDSNNTMPFTPAAMRSETLGFYPWKPTIPTPWRYYFQWDRTLIPSHTGTSGTPTNVYHGTDPDDVQFYTIENSVPVHLLRTGDEFATGTFFFDCKPCRLTHTWQTNRALGLPPFLNSLPQSEGATNFGDIGVQQDKRRGVTQMGNTDYITEATIMRPAEVGYSAPYYSFEASTQGPFKTPIAAGRGGAQTDENQAADGDPRYAFGRQHGQKTTTTGETPERFTYIAHQDTGRYPEGDWIQNINFNLPVTNDNVLLPTDPIGGKTGINYTNIFNTYGPLTALNNVPPVYPNGQIWDKEFDTDLKPRLHVNAPFVCQNNCPGQLFVKVAPNLTNEYDPDASANMSRIVTYSDFWWKGKLVFKAKLRASHTWNPIQQMSINVDNQFNYVPNNIGAMKIVYEKSQLAPRKLY'] DB cross refs [] ***Record from NC_005816.gb with the FeatureParser Seq: Seq('TGTAACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGG...CTG', IUPACAmbiguousDNA()) Id: NC_005816.1 Name: NC_005816 Description Yersinia pestis biovar Microtus str. 91001 plasmid pPCP1, complete sequence. Annotations*** Key: accessions Value: ['NC_005816'] Key: comment Value: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AE017046. COMPLETENESS: full length. Key: data_file_division Value: BCT Key: date Value: 21-JUL-2008 Key: gi Value: 45478711 Key: keywords Value: [''] Key: organism Value: Yersinia pestis biovar Microtus str. 91001 References* location: [0:9609] authors: Zhou,D., Tong,Z., Song,Y., Han,Y., Pei,D., Pang,X., Zhai,J., Li,M., Cui,B., Qi,Z., Jin,L., Dai,R., Du,Z., Wang,J., Guo,Z., Wang,J., Huang,P. and Yang,R. title: Genetics of metabolic variations between Yersinia pestis biovars and the proposal of a new biovar, microtus journal: J. Bacteriol. 186 (15), 5147-5152 (2004) medline id: pubmed id: 15262951 comment: location: [0:9609] authors: Song,Y., Tong,Z., Wang,J., Wang,L., Guo,Z., Han,Y., Zhang,J., Pei,D., Zhou,D., Qin,H., Pang,X., Han,Y., Zhai,J., Li,M., Cui,B., Qi,Z., Jin,L., Dai,R., Chen,F., Li,S., Ye,C., Du,Z., Lin,W., Wang,J., Yu,J., Yang,H., Wang,J., Huang,P. and Yang,R. title: Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans journal: DNA Res. 11 (3), 179-197 (2004) medline id: pubmed id: 15368893 comment: location: [0:9609] authors: consrtm: NCBI Genome Project title: Direct Submission journal: Submitted (16-MAR-2004) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA medline id: pubmed id: comment: location: [0:9609] authors: Song,Y., Tong,Z., Wang,L., Han,Y., Zhang,J., Pei,D., Wang,J., Zhou,D., Han,Y., Pang,X., Zhai,J., Chen,F., Qin,H., Wang,J., Li,S., Guo,Z., Ye,C., Du,Z., Lin,W., Wang,J., Yu,J., Yang,H., Wang,J., Huang,P. and Yang,R. title: Direct Submission journal: Submitted (24-APR-2003) The Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences, No. 20, Dongdajie Street, Fengtai District, Beijing 100071, People's Republic of China medline id: pubmed id: comment: Key: sequence_version Value: 1 Key: source Value: Yersinia pestis biovar Microtus str. 91001 Key: taxonomy Value: ['Bacteria', 'Proteobacteria', 'Gammaproteobacteria', 'Enterobacteriales', 'Enterobacteriaceae', 'Yersinia'] Key: topology Value: circular Features type: source location: [0:9609](+) qualifiers: Key: biovar, Value: ['Microtus'] Key: db_xref, Value: ['taxon:229193'] Key: mol_type, Value: ['genomic DNA'] Key: organism, Value: ['Yersinia pestis biovar Microtus str. 91001'] Key: plasmid, Value: ['pPCP1'] Key: strain, Value: ['91001'] type: repeat_region location: [0:1954](+) qualifiers: type: gene location: [86:1109](+) qualifiers: Key: db_xref, Value: ['GeneID:2767718'] Key: locus_tag, Value: ['YP_pPCP01'] type: CDS location: [86:1109](+) qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:45478712', 'GeneID:2767718'] Key: locus_tag, Value: ['YP_pPCP01'] Key: note, Value: ['similar to corresponding CDS from previously sequenced pPCP plasmid of Yersinia pestis KIM (AF053945) and CO92 (AL109969), also many transposase entries for insertion sequence IS100 of Yersinia pestis. Contains IS21-like element transposase, HTH domain (Interpro|IPR007101)'] Key: product, Value: ['putative transposase'] Key: protein_id, Value: ['NP_995567.1'] Key: transl_table, Value: ['11'] Key: translation, Value: ['MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVA'] type: misc_feature location: [86:959](+) qualifiers: Key: db_xref, Value: ['CDD:34222'] Key: locus_tag, Value: ['YP_pPCP01'] Key: note, Value: ['Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584'] type: misc_feature location: [<110:209](+) qualifiers: Key: db_xref, Value: ['CDD:186341'] Key: locus_tag, Value: ['YP_pPCP01'] Key: note, Value: ['Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116'] type: misc_feature location: [437:812](+) qualifiers: Key: db_xref, Value: ['CDD:194099'] Key: locus_tag, Value: ['YP_pPCP01'] Key: note, Value: ['Integrase core domain; Region: rve; cl01316'] type: gene location: [1105:1888](+) qualifiers: Key: db_xref, Value: ['GeneID:2767716'] Key: locus_tag, Value: ['YP_pPCP02'] type: CDS location: [1105:1888](+) qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:45478713', 'GeneID:2767716'] Key: locus_tag, Value: ['YP_pPCP02'] Key: note, Value: ['similar to corresponding CDS form previously sequenced pPCP plasmid of Yersinia pestis KIM (AF053945) and CO92 (AL109969), also many ATP-binding protein entries for insertion sequence IS100 of Yersinia pestis. Contains Chaperonin clpA/B (Interpro|IPR001270). Contains ATP/GTP-binding site motif A (P-loop) (Interpro|IPR001687, Molecular Function: ATP binding (GO:0005524)). Contains Bacterial chromosomal replication initiator protein, DnaA (Interpro|IPR001957, Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA replication origin binding (GO:0003688), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication initiation (GO:0006270), Biological Process: regulation of DNA replication (GO:0006275)). Contains AAA ATPase (Interpro|IPR003593, Molecular Function: nucleotide binding (GO:0000166))'] Key: product, Value: ['transposase/IS protein'] Key: protein_id, Value: ['NP_995568.1'] Key: transl_table, Value: ['11'] Key: translation, Value: ['MMMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE'] type: misc_feature location: [1108:1885](+) qualifiers: Key: db_xref, Value: ['CDD:181681'] Key: locus_tag, Value: ['YP_pPCP02'] Key: note, Value: ['transposase/IS protein; Provisional; Region: PRK09183'] type: misc_feature location: [1366:>1669](+) qualifiers: Key: db_xref, Value: ['CDD:99707'] Key: locus_tag, Value: ['YP_pPCP02'] Key: note, Value: ['The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009'] type: misc_feature location: [1432:1456](+) qualifiers: Key: db_xref, Value: ['CDD:99707'] Key: locus_tag, Value: ['YP_pPCP02'] Key: note, Value: ['Walker A motif; other site'] type: misc_feature location: order{[1435:1459](+), [1618:1621](+)} qualifiers: Key: db_xref, Value: ['CDD:99707'] Key: locus_tag, Value: ['YP_pPCP02'] Key: note, Value: ['ATP binding site [chemical binding]; other site'] type: misc_feature location: [1606:1624](+) qualifiers: Key: db_xref, Value: ['CDD:99707'] Key: locus_tag, Value: ['YP_pPCP02'] Key: note, Value: ['Walker B motif; other site'] type: gene location: [2924:3119](+) qualifiers: Key: db_xref, Value: ['GeneID:2767717'] Key: gene, Value: ['rop'] Key: gene_synonym, Value: ['rom'] Key: locus_tag, Value: ['YP_pPCP03'] type: CDS location: [2924:3119](+) qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:45478714', 'GeneID:2767717'] Key: gene, Value: ['rop'] Key: gene_synonym, Value: ['rom'] Key: locus_tag, Value: ['YP_pPCP03'] Key: note, Value: ['Best Blastp hit =gi|16082682|ref|NP_395229.1| (NC_003132) putative replication regulatory protein [Yersinia pestis], gi|5763813|emb|CAB531 66.1| (AL109969) putative replication regulatory protein [Yersinia pestis]; similar to gb|AAK91579.1| (AY048853), RNAI modulator protein Rom [Salmonella choleraesuis], Contains Regulatory protein Rop (Interpro|IPR000769)'] Key: product, Value: ['putative replication regulatory protein'] Key: protein_id, Value: ['NP_995569.1'] Key: transl_table, Value: ['11'] Key: translation, Value: ['MNKQQQTALNMARFIRSQSLILLEKLDALDADEQAAMCERLHELAEELQNSIQARFEAESETGT'] type: misc_feature location: [2924:3107](+) qualifiers: Key: db_xref, Value: ['CDD:145136'] Key: gene, Value: ['rop'] Key: gene_synonym, Value: ['rom'] Key: locus_tag, Value: ['YP_pPCP03'] Key: note, Value: ['Rop protein; Region: Rop; pfam01815'] type: gene location: [3485:3857](+) qualifiers: Key: db_xref, Value: ['GeneID:2767720'] Key: locus_tag, Value: ['YP_pPCP04'] type: CDS location: [3485:3857](+) qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:45478715', 'GeneID:2767720'] Key: locus_tag, Value: ['YP_pPCP04'] Key: note, Value: ['Best Blastp hit = gi|321919|pir||JQ1541 hypothetical 16.9K protein - Salmonella typhi murium plasmid NTP16.'] Key: product, Value: ['hypothetical protein'] Key: protein_id, Value: ['NP_995570.1'] Key: transl_table, Value: ['11'] Key: translation, Value: ['MSKKRRPQKRPRRRRFFHRLRPPDEHHKNRRSSQRWRNPTGLKDTRRFPPEAPSCALLFRPCRLPDTSPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTTAPYPVTIVLSPTR'] type: misc_feature location: [3497:3626](+) qualifiers: Key: locus_tag, Value: ['YP_pPCP04'] Key: note, Value: ['ProfileScan match to entry PS50323 ARG_RICH, E-value 8.981'] type: gene location: [4342:4780](+) qualifiers: Key: db_xref, Value: ['GeneID:2767712'] Key: gene, Value: ['pim'] Key: locus_tag, Value: ['YP_pPCP05'] type: CDS location: [4342:4780](+) qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:45478716', 'GeneID:2767712'] Key: gene, Value: ['pim'] Key: locus_tag, Value: ['YP_pPCP05'] Key: note, Value: ['similar to many previously sequenced pesticin immunity protein entries of Yersinia pestis plasmid pPCP, e.g. gi| 16082683|,ref|NP_395230.1| (NC_003132) , gi|1200166|emb|CAA90861.1| (Z54145 ) , gi|1488655| emb|CAA63439.1| (X92856) , gi|2996219|gb|AAC62543.1| (AF053945) , and gi|5763814|emb|CAB531 67.1| (AL109969)'] Key: product, Value: ['pesticin immunity protein'] Key: protein_id, Value: ['NP_995571.1'] Key: transl_table, Value: ['11'] Key: translation, Value: ['MGGGMISKLFCLALIFLSSSGLAEKNTYTAKDILQNLELNTFGNSLSHGIYGKQTTFKQTEFTNIKSNTKKHIALINKDNSWMISLKILGIKRDEYTVCFEDFSLIRPPTYVAIHPLLIKKVKSGNFIVVKEIKKSIPGCTVYYH'] type: gene location: [4814:5888](-) qualifiers: Key: db_xref, Value: ['GeneID:2767721'] Key: gene, Value: ['pst'] Key: locus_tag, Value: ['YP_pPCP06'] type: CDS location: [4814:5888](-) qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:45478717', 'GeneID:2767721'] Key: gene, Value: ['pst'] Key: locus_tag, Value: ['YP_pPCP06'] Key: note, Value: ['Best Blastp hit =|16082684|ref|NP_395231.1| (NC_003132) pesticin [Yersinia pestis], gi|984824|gb|AAA75369.1| (U31974) pesticin [Yersinia pestis], gi|1488654|emb|CAA63438.1| (X92856) pesticin [Yersinia pestis], gi|2996220|gb|AAC62544.1| (AF053945) pesticin [Yersinia pestis], gi|5763815|emb|CAB53168.1| (AL1099 69) pesticin [Yersinia pestis]'] Key: product, Value: ['pesticin'] Key: protein_id, Value: ['NP_995572.1'] Key: transl_table, Value: ['11'] Key: translation, Value: ['MSDTMVVNGSGGVPAFLFSGSTLSSYRPNFEANSITIALPHYVDLPGRSNFKLMYIMGFPIDTEMEKDSEYSNKIRQESKISKTEGTVSYEQKITVETGQEKDGVKVYRVMVLEGTIAESIEHLDKKENEDILNNNRNRIVLADNTVINFDNISQLKEFLRRSVNIVDHDIFSSNGFEGFNPTSHFPSNPSSDYFNSTGVTFGSGVDLGQRSKQDLLNDGVPQYIADRLDGYYMLRGKEAYDKVRTAPLTLSDNEAHLLSNIYIDKFSHKIEGLFNDANIGLRFSDLPLRTRTALVSIGYQKGFKLSRTAPTVWNKVIAKDWNGLVNAFNNIVDGMSDRRKREGALVQKDIDSGLLK'] type: variation location: [5909:5911](+) qualifiers: Key: note, Value: ['compared to AF053945'] Key: replace, Value: [''] type: variation location: [5933:5933](+) qualifiers: Key: note, Value: ['compared to AL109969'] Key: replace, Value: ['a'] type: variation location: [5933:5933](+) qualifiers: Key: note, Value: ['compared to AF053945'] Key: replace, Value: ['aa'] type: variation location: [5947:5948](+) qualifiers: Key: note, Value: ['compared to AL109969'] Key: replace, Value: ['c'] type: gene location: [6004:6421](+) qualifiers: Key: db_xref, Value: ['GeneID:2767719'] Key: locus_tag, Value: ['YP_pPCP07'] type: CDS location: [6004:6421](+) qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:45478718', 'GeneID:2767719'] Key: locus_tag, Value: ['YP_pPCP07'] Key: note, Value: ['Best Blastp hit = gi|16082685|ref|NP_395232.1| (NC_003132) hypothetical protein [Yersinia pestis], gi|5763816|emb|CAB53169.1| (AL109969) hypothetical protein [Yersinia pestis]'] Key: product, Value: ['hypothetical protein'] Key: protein_id, Value: ['NP_995573.1'] Key: transl_table, Value: ['11'] Key: translation, Value: ['MKFHFCDLNHSYKNQEGKIRSRKTAPGNIRKKQKGDNVSKTKSGRHRLSKTDKRLLAALVVAGYEERTARDLIQKHVYTLTQADLRHLVSEISNGVGQSQAYDAIYQARRIRLARKYLSGKKPEGVEPREGQEREDLP'] type: variation location: [6524:6525](+) qualifiers: Key: note, Value: ['compared to AF053945 and AL109969'] Key: replace, Value: ['c'] type: gene location: [6663:7602](+) qualifiers: Key: db_xref, Value: ['GeneID:2767715'] Key: gene, Value: ['pla'] Key: locus_tag, Value: ['YP_pPCP08'] type: CDS location: [6663:7602](+) qualifiers: Key: EC_number, Value: ['3.4.23.48'] Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:45478719', 'GeneID:2767715'] Key: gene, Value: ['pla'] Key: locus_tag, Value: ['YP_pPCP08'] Key: note, Value: ['outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves the autotransporter IcsA'] Key: product, Value: ['outer membrane protease'] Key: protein_id, Value: ['NP_995574.1'] Key: transl_table, Value: ['11'] Key: translation, Value: ['MKKSSIVATIITILSGSANAASSQLIPNISPDSFTVAASTGMLSGKSHEMLYDAETGRKISQLDWKIKNVAILKGDISWDPYSFLTLNARGWTSLASGSGNMDDYDWMNENQSEWTDHSSHPATNVNHANEYDLNVKGWLLQDENYKAGITAGYQETRFSWTATGGSYSYNNGAYTGNFPKGVRVIGYNQRFSMPYIGLAGQYRINDFELNALFKFSDWVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSKYDEGKGGTQIIDKNSGDSVSIGGDAAGISNKNYTVTAGLQYRF'] type: misc_feature location: [6663:7599](+) qualifiers: Key: db_xref, Value: ['CDD:186487'] Key: gene, Value: ['pla'] Key: locus_tag, Value: ['YP_pPCP08'] Key: note, Value: ['Omptin family; Region: Omptin; cl01886'] type: gene location: [7788:8088](-) qualifiers: Key: db_xref, Value: ['GeneID:2767713'] Key: locus_tag, Value: ['YP_pPCP09'] type: CDS location: [7788:8088](-) qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:45478720', 'GeneID:2767713'] Key: locus_tag, Value: ['YP_pPCP09'] Key: note, Value: ['Best Blastp hit = gi|16082687|ref|NP_395234.1| (NC_003132) putative transcriptional regulator [Yersinia pestis], gi|5763818|emb|CAB53171.1| (AL109969) putative transcriptional regulator [Yersinia pestis].'] Key: product, Value: ['putative transcriptional regulator'] Key: protein_id, Value: ['NP_995575.1'] Key: transl_table, Value: ['11'] Key: translation, Value: ['MRTLDEVIASRSPESQTRIKEMADEMILEVGLQMMREELQLSQKQVAEAMGISQPAVTKLEQRGNDLKLATLKRYVEAMGGKLSLDVELPTGRRVAFHV'] type: misc_feature location: [7836:7995](-) qualifiers: Key: db_xref, Value: ['CDD:195788'] Key: locus_tag, Value: ['YP_pPCP09'] Key: note, Value: ['Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl09100'] type: gene location: [8087:8360](-) qualifiers: Key: db_xref, Value: ['GeneID:2767714'] Key: locus_tag, Value: ['YP_pPCP10'] type: CDS location: [8087:8360](-) qualifiers: Key: codon_start, Value: ['1'] Key: db_xref, Value: ['GI:45478721', 'GeneID:2767714'] Key: locus_tag, Value: ['YP_pPCP10'] Key: note, Value: ['Best Blastp hit = gi|16082688|ref|NP_395235.1| (NC_003132) hypothetical protein [ Yersinia pestis], gi|5763819|emb|CAB53172.1| (AL109969) hypothetical protein [Yersinia pestis]'] Key: product, Value: ['hypothetical protein'] Key: protein_id, Value: ['NP_995576.1'] Key: transl_table, Value: ['11'] Key: translation, Value: ['MADLKKLQVYGPELPRPYADTVKGSRYKNMKELRVQFSGRPIRAFYAFDPIRRAIVLCAGDKSNDKRFYEKLVRIAEDEFTAHLNTLESK'] type: misc_feature location: [8090:>8357](-) qualifiers: Key: db_xref, Value: ['CDD:194142'] Key: locus_tag, Value: ['YP_pPCP10'] Key: note, Value: ['Phage derived protein Gp49-like (DUF891); Region: Gp49; cl01470'] type: variation location: [8529:8529](+) qualifiers: Key: note, Value: ['compared to AL109969'] Key: replace, Value: ['tt'] DB cross refs ['Project:58037'] ***Record from no_end_marker.gb with the FeatureParser Seq: Seq('CTAGCAGCCCGCATCGCCCTCGACGTTGGCGATCATCGTGCGCAGCACCTTGAG...TGA', IUPACAmbiguousDNA()) Id: AB070938.1 Name: AB070938 Description Streptomyces avermitilis melanin biosynthetic gene cluster. Annotations*** Key: accessions Value: ['AB070938'] Key: data_file_division Value: BCT Key: date Value: 11-OCT-2001 Key: gi Value: 15823953 Key: keywords Value: [''] Key: organism Value: Streptomyces avermitilis Key: sequence_version Value: 1 Key: source Value: Streptomyces avermitilis Key: taxonomy Value: ['Bacteria', 'Actinobacteria', 'Actinobacteridae', 'Actinomycetales', 'Streptomycineae', 'Streptomycetaceae', 'Streptomyces'] Key: topology Value: linear Features type: source location: [0:6497](+) qualifiers: Key: db_xref, Value: ['taxon:33903'] Key: mol_type, Value: ['genomic DNA'] Key: organism, Value: ['Streptomyces avermitilis'] DB cross refs [] ***Record from wrong_sequence_indent.gb with the FeatureParser Seq: Seq('CTAGCAGCCCGCATCGCCCTCGACGTTGGCGATCATCGTGCGCAGCACCTTGAG...TGA', IUPACAmbiguousDNA()) Id: AB070938.1 Name: AB070938 Description Streptomyces avermitilis melanin biosynthetic gene cluster. Annotations*** Key: accessions Value: ['AB070938'] Key: data_file_division Value: BCT Key: date Value: 11-OCT-2001 Key: gi Value: 15823953 Key: keywords Value: [''] Key: organism Value: Streptomyces avermitilis Key: sequence_version Value: 1 Key: source Value: Streptomyces avermitilis Key: taxonomy Value: ['Bacteria', 'Actinobacteria', 'Actinobacteridae', 'Actinomycetales', 'Streptomycineae', 'Streptomycetaceae', 'Streptomyces'] Key: topology Value: linear Features type: source location: [0:6497](+) qualifiers: Key: db_xref, Value: ['taxon:33903'] Key: mol_type, Value: ['genomic DNA'] Key: organism, Value: ['Streptomyces avermitilis'] DB cross refs [] ***Record from invalid_locus_line_spacing.gb with the FeatureParser Seq: Seq('CTAGCAGCCCGCATCGCCCTCGACGTTGGCGATCATCGTGCGCAGCACCTTGAG...TGA', IUPACAmbiguousDNA()) Id: AB070938.1 Name: AB070938 Description Streptomyces avermitilis melanin biosynthetic gene cluster. Annotations*** Key: accessions Value: ['AB070938'] Key: data_file_division Value: BCT Key: date Value: 11-OCT-2001 Key: gi Value: 15823953 Key: keywords Value: [''] Key: organism Value: Streptomyces avermitilis Key: sequence_version Value: 1 Key: source Value: Streptomyces avermitilis Key: taxonomy Value: ['Bacteria', 'Actinobacteria', 'Actinobacteridae', 'Actinomycetales', 'Streptomycineae', 'Streptomycetaceae', 'Streptomyces'] Features type: source location: [0:6497](+) qualifiers: Key: db_xref, Value: ['taxon:33903'] Key: mol_type, Value: ['genomic DNA'] Key: organism, Value: ['Streptomyces avermitilis'] DB cross refs [] ***Record from empty_feature_qualifier.gb with the FeatureParser Seq: Seq('CTAGCAGCCCGCATCGCCCTCGACGTTGGCGATCATCGTGCGCAGCACCTTGAG...TGA', IUPACAmbiguousDNA()) Id: AB070938.1 Name: AB070938 Description Streptomyces avermitilis melanin biosynthetic gene cluster. Annotations*** Key: accessions Value: ['AB070938'] Key: data_file_division Value: BCT Key: date Value: 11-OCT-2001 Key: gi Value: 15823953 Key: keywords Value: [''] Key: organism Value: Streptomyces avermitilis Key: sequence_version Value: 1 Key: source Value: Streptomyces avermitilis Key: taxonomy Value: ['Bacteria', 'Actinobacteria', 'Actinobacteridae', 'Actinomycetales', 'Streptomycineae', 'Streptomycetaceae', 'Streptomyces'] Key: topology Value: linear Features type: source location: [0:6497](+) qualifiers: Key: db_xref, Value: ['taxon:33903'] Key: mol_type, Value: ['genomic DNA'] Key: note, Value: ["This is a correct note, the following one isn't"] Key: organism, Value: ['Streptomyces avermitilis'] DB cross refs [] ***Record from invalid_misc_feature.gb with the FeatureParser Seq: Seq('CTAGCAGCCCGCATCGCCCTCGACGTTGGCGATCATCGTGCGCAGCACCTTGAG...TGA', IUPACAmbiguousDNA()) Id: AB070938.1 Name: AB070938 Description Streptomyces avermitilis melanin biosynthetic gene cluster. Annotations*** Key: accessions Value: ['AB070938'] Key: data_file_division Value: BCT Key: date Value: 11-OCT-2001 Key: gi Value: 15823953 Key: keywords Value: [''] Key: organism Value: Streptomyces avermitilis Key: sequence_version Value: 1 Key: source Value: Streptomyces avermitilis Key: taxonomy Value: ['Bacteria', 'Actinobacteria', 'Actinobacteridae', 'Actinomycetales', 'Streptomycineae', 'Streptomycetaceae', 'Streptomyces'] Key: topology Value: linear Features type: source location: [0:6497](+) qualifiers: Key: db_xref, Value: ['taxon:33903'] Key: mol_type, Value: ['genomic DNA'] Key: organism, Value: ['Streptomyces avermitilis'] DB cross refs [] ***Record from 1MRR_A.gp with the FeatureParser Seq: Seq('AYTTFSATKNDQLKEPMFFGQPVQVARYDQQKYDIFEKLIEKQLSFFWRPEEVD...FQL', IUPACProtein()) Id: 1MRR_A Name: 1MRR_A Description Chain A, Substitution Of Manganese For Iron In Ribonucleotide Reductase From Escherichia Coli. Spectroscopic And Crystallographic Characterization. Annotations*** Key: accessions Value: ['1MRR_A'] Key: comment Value: 1 Ribonucleotide Reductase R1 Protein. Key: data_file_division Value: BCT Key: date Value: 10-OCT-2012 Key: db_source Value: pdb: molecule 1MRR, chain 65, release Aug 28, 2012; deposition: Jul 28, 1992; class: Reductase(Acting On Ch2); source: Mmdb_id: 50351, Pdb_id 1: 1MRR; Exp. method: X-Ray Diffraction. Key: gi Value: 494379 Key: keywords Value: [''] Key: organism Value: Escherichia coli References* location: [0:375] authors: Nordlund,P., Sjoberg,B.M. and Eklund,H. title: Three-dimensional structure of the free radical protein of ribonucleotide reductase journal: Nature 345 (6276), 593-598 (1990) medline id: pubmed id: 2190093 comment: location: [0:375] authors: Atta,M., Nordlund,P., Aberg,A., Eklund,H. and Fontecave,M. title: Substitution of manganese for iron in ribonucleotide reductase from Escherichia coli. Spectroscopic and crystallographic characterization journal: J. Biol. Chem. 267 (29), 20682-20688 (1992) medline id: pubmed id: 1328209 comment: location: [0:375] authors: Eklund,H. and Nordlund,P. title: Direct Submission journal: Submitted (28-JUL-1992) medline id: pubmed id: comment: Key: source Value: Escherichia coli Key: taxonomy Value: ['Bacteria', 'Proteobacteria', 'Gammaproteobacteria', 'Enterobacteriales', 'Enterobacteriaceae', 'Escherichia'] Key: topology Value: linear Features type: source location: [0:375] qualifiers: Key: db_xref, Value: ['taxon:562'] Key: organism, Value: ['Escherichia coli'] type: Region location: [27:340] qualifiers: Key: db_xref, Value: ['CDD:153108'] Key: note, Value: ['Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain; cd01049'] Key: region_name, Value: ['RNRR2'] type: SecStr location: [34:46] qualifiers: Key: note, Value: ['helix 1'] Key: sec_str_type, Value: ['helix'] type: Site location: order{[36:37], [43:44], [108:110], [112:113], [115:117], [119:120], [122:123], [136:138], [140:141]} qualifiers: Key: db_xref, Value: ['CDD:153108'] Key: note, Value: ['dimer interface [polypeptide binding]'] Key: site_type, Value: ['other'] type: Site location: order{[47:48], [83:84], [114:115], [117:118], [121:122], [235:237], [240:241]} qualifiers: Key: db_xref, Value: ['CDD:153108'] Key: note, Value: ['putative radical transfer pathway'] Key: site_type, Value: ['other'] type: SecStr location: [56:65] qualifiers: Key: note, Value: ['helix 2'] Key: sec_str_type, Value: ['helix'] type: SecStr location: [66:87] qualifiers: Key: note, Value: ['helix 3'] Key: sec_str_type, Value: ['helix'] type: Site location: order{[83:84], [114:115], [117:118], [203:204], [237:238], [240:241]} qualifiers: Key: db_xref, Value: ['CDD:153108'] Key: note, Value: ['diiron center [ion binding]'] Key: site_type, Value: ['other'] type: Het location: join{[83:84], [114:115], [117:118], [237:238]} qualifiers: Key: heterogen, Value: ['( MN,1000 )'] type: SecStr location: [101:129] qualifiers: Key: note, Value: ['helix 4'] Key: sec_str_type, Value: ['helix'] type: Het location: join{[114:115], [203:204], [237:238], [240:241]} qualifiers: Key: heterogen, Value: ['( MN,1001 )'] type: Site location: [121:122] qualifiers: Key: db_xref, Value: ['CDD:153108'] Key: note, Value: ['tyrosyl radical'] Key: site_type, Value: ['other'] type: SecStr location: [132:140] qualifiers: Key: note, Value: ['helix 5'] Key: sec_str_type, Value: ['helix'] type: SecStr location: [142:151] qualifiers: Key: note, Value: ['helix 6'] Key: sec_str_type, Value: ['helix'] type: SecStr location: [152:169] qualifiers: Key: note, Value: ['helix 7'] Key: sec_str_type, Value: ['helix'] type: SecStr location: [171:177] qualifiers: Key: note, Value: ['strand 1'] Key: sec_str_type, Value: ['sheet'] type: SecStr location: [179:185] qualifiers: Key: note, Value: ['strand 2'] Key: sec_str_type, Value: ['sheet'] type: SecStr location: [185:216] qualifiers: Key: note, Value: ['helix 8'] Key: sec_str_type, Value: ['helix'] type: Het location: join{[193:194], [271:272]} qualifiers: Key: heterogen, Value: ['( HG,1003 )'] type: Het location: [195:196] qualifiers: Key: heterogen, Value: ['( HG,1005 )'] type: Het location: join{[195:196], [195:196]} qualifiers: Key: heterogen, Value: ['( HG,1002 )'] type: Het location: join{[209:210], [213:214], [213:214]} qualifiers: Key: heterogen, Value: ['( HG,1004 )'] type: SecStr location: [224:253] qualifiers: Key: note, Value: ['helix 9'] Key: sec_str_type, Value: ['helix'] type: SecStr location: [259:269] qualifiers: Key: note, Value: ['helix 10'] Key: sec_str_type, Value: ['helix'] type: Bond location: bond{[267:268], [271:272]} qualifiers: Key: bond_type, Value: ['disulfide'] type: SecStr location: [269:285] qualifiers: Key: note, Value: ['helix 11'] Key: sec_str_type, Value: ['helix'] type: Het location: join{[283:284], [304:305], [308:309], [304:305]} qualifiers: Key: heterogen, Value: ['( HG,1006 )'] type: SecStr location: [300:319] qualifiers: Key: note, Value: ['helix 12'] Key: sec_str_type, Value: ['helix'] DB cross refs [] ***Record from noref.gb with the RecordParser sequence length: 1622 locus: NM_006141 definition: Homo sapiens dynein, cytoplasmic, light intermediate polypeptide 2 (DNCLI2), mRNA. accession: ['NM_006141'] feature key: source location: 1..1622 num qualifiers: 3 key: /organism= value: "Homo sapiens" key: /db_xref= value: "taxon:9606" key: /map= value: "16" feature key: gene location: 1..1622 num qualifiers: 3 key: /gene= value: "DNCLI2" key: /note= value: "LIC2" key: /db_xref= value: "LocusID:1783" feature key: CDS location: 7..1485 num qualifiers: 8 key: /gene= value: "DNCLI2" key: /note= value: "similar to R. norvegicus and G. gallus dynein light intermediate chain 2, Swiss-Prot Accession Numbers Q62698 and Q90828, respectively" key: /codon_start= value: 1 key: /db_xref= value: "LocusID:1783" key: /product= value: "dynein, cytoplasmic, light intermediate polypeptide 2" key: /protein_id= value: "NP_006132.1" key: /db_xref= value: "GI:5453634" key: /translation= value: "MAPVGVEKKLLLGPNGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVFGEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYHKGLLKFAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEKMRELERKFVKDFQDYMEPEEGCQGSPQRRGPLTSGSDEENVALPLGDNVLTHNLGIPVLVVCTKCDAVSVLEKEHDYRDEHLDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPALVVEKDAVFIPAGWDNEKKIAILHENFTTVKPEDAYEDFIVKPPVRKLVHDKELAAEDEQVFLMKQQSLLAKQPATPTRASESPARGPSGSPRTQGRGGPASVPSSSPGTSVKKPDPNIKNNAASEGVLASFFNSLLSKKTGSPGSPGAGGVQSTAKKSGQKTVLSNVQEELDRMTRKPDSMVTNSSTENEA" ***Record from cor6_6.gb with the RecordParser sequence length: 513 locus: ATCOR66M definition: A.thaliana cor6.6 mRNA. accession: ['X55053'] reference title: Direct Submission reference title: cDNA sequence analysis and expression of two cold-regulated genes of Arabidopsis thaliana feature key: source location: 1..513 num qualifiers: 3 key: /organism= value: "Arabidopsis thaliana" key: /strain= value: "Columbia" key: /db_xref= value: "taxon:3702" feature key: gene location: 50..250 num qualifiers: 1 key: /gene= value: "cor6.6" feature key: CDS location: 50..250 num qualifiers: 7 key: /gene= value: "cor6.6" key: /note= value: "cold regulated" key: /codon_start= value: 1 key: /protein_id= value: "CAA38894.1" key: /db_xref= value: "GI:16230" key: /db_xref= value: "SWISS-PROT:P31169" key: /translation= value: "MSETNKNAFQAGQAAGKAEEKSNVLLDKAKDAAAAAGASAQQAGKSISDAAVGGVNFVKDKTGLNK" ***Record from cor6_6.gb with the RecordParser sequence length: 880 locus: ATKIN2 definition: A.thaliana kin2 gene. accession: ['X62281'] reference title: Direct Submission reference title: Structure and expression of kin2, one of two cold- and ABA-induced genes of Arabidopsis thaliana feature key: source location: 1..880 num qualifiers: 3 key: /organism= value: "Arabidopsis thaliana" key: /strain= value: "ssp. L. Heynh, Colombia" key: /db_xref= value: "taxon:3702" feature key: TATA_signal location: 9..20 num qualifiers: 0 feature key: exon location: 44..160 num qualifiers: 2 key: /gene= value: "kin2" key: /number= value: 1 feature key: prim_transcript location: 44..>579 num qualifiers: 1 key: /gene= value: "kin2" feature key: mRNA location: join(44..160,320..390,504..>579) num qualifiers: 1 key: /gene= value: "kin2" feature key: gene location: 44..579 num qualifiers: 1 key: /gene= value: "kin2" feature key: CDS location: join(104..160,320..390,504..579) num qualifiers: 6 key: /gene= value: "kin2" key: /codon_start= value: 1 key: /protein_id= value: "CAA44171.1" key: /db_xref= value: "GI:16354" key: /db_xref= value: "SWISS-PROT:P31169" key: /translation= value: "MSETNKNAFQAGQAAGKAERRRAMFCWTRPRMLLLQLELPRNRAGKSISDAAVGGVNFVKDKTGLNK" feature key: intron location: 161..319 num qualifiers: 2 key: /gene= value: "kin2" key: /number= value: 1 feature key: exon location: 320..390 num qualifiers: 2 key: /gene= value: "kin2" key: /number= value: 2 feature key: intron location: 391..503 num qualifiers: 2 key: /gene= value: "kin2" key: /number= value: 2 feature key: exon location: 504..>579 num qualifiers: 2 key: /gene= value: "kin2" key: /number= value: 3 feature key: polyA_signal location: 620..625 num qualifiers: 0 feature key: polyA_signal location: 641..646 num qualifiers: 0 feature key: polyA_site location: 785 num qualifiers: 0 feature key: polyA_site location: 800 num qualifiers: 0 ***Record from cor6_6.gb with the RecordParser sequence length: 441 locus: BNAKINI definition: Rapeseed Kin1 protein (kin1) mRNA, complete cds. accession: ['M81224'] reference title: Nucleotide sequence of a winter B. napus Kin 1 cDNA feature key: source location: 1..441 num qualifiers: 5 key: /organism= value: "Brassica napus" key: /cultivar= value: "Jet neuf" key: /db_xref= value: "taxon:3708" key: /dev_stage= value: "cold induced" key: /tissue_type= value: "leaf" feature key: gene location: 34..300 num qualifiers: 1 key: /gene= value: "kin1" feature key: CDS location: 34..231 num qualifiers: 6 key: /gene= value: "kin1" key: /codon_start= value: 1 key: /evidence= value: experimental key: /protein_id= value: "AAA32993.1" key: /db_xref= value: "GI:167146" key: /translation= value: "MADNKQSFQAGQASGRAEEKGNVLMDKVKDAATAAGASAQTAGQKITEAAGGAVNLVKEKTGMNK" feature key: polyA_signal location: 241..247 num qualifiers: 2 key: /gene= value: "kin1" key: /note= value: "putative" feature key: polyA_signal location: 294..300 num qualifiers: 2 key: /gene= value: "kin1" key: /note= value: "putative" feature key: polyA_site location: 441 num qualifiers: 1 key: /gene= value: "kin1" ***Record from cor6_6.gb with the RecordParser sequence length: 206 locus: ARU237582 definition: Armoracia rusticana csp14 gene (partial), exons 2-3. accession: ['AJ237582'] reference title: reference title: Direct Submission feature key: source location: 1..206 num qualifiers: 3 key: /organism= value: "Armoracia rusticana" key: /db_xref= value: "taxon:3704" key: /country= value: "Russia:Bashkortostan" feature key: mRNA location: join(<1..48,143..>206) num qualifiers: 1 key: /gene= value: "csp14" feature key: exon location: 1..48 num qualifiers: 2 key: /gene= value: "csp14" key: /number= value: 2 feature key: gene location: 1..206 num qualifiers: 1 key: /gene= value: "csp14" feature key: CDS location: join(<1..48,143..>206) num qualifiers: 6 key: /gene= value: "csp14" key: /codon_start= value: 2 key: /product= value: "cold shock protein" key: /protein_id= value: "CAB39890.1" key: /db_xref= value: "GI:4538893" key: /translation= value: "DKAKDAAAAAGASAQQAGKNISDAAAGGVNFVKEKTG" feature key: intron location: 49..142 num qualifiers: 2 key: /gene= value: "csp14" key: /number= value: 2 feature key: exon location: 143..206 num qualifiers: 2 key: /gene= value: "csp14" key: /number= value: 3 ***Record from cor6_6.gb with the RecordParser sequence length: 282 locus: BRRBIF72 definition: Brassica rapa (clone bif72) kin mRNA, complete cds. accession: ['L31939'] reference title: Nucleotide sequences of kin gene in chinese cabbage feature key: source location: 1..282 num qualifiers: 3 key: /organism= value: "Brassica rapa" key: /db_xref= value: "taxon:3711" key: /dev_stage= value: "flower" feature key: gene location: 24..221 num qualifiers: 1 key: /gene= value: "kin" feature key: CDS location: 24..221 num qualifiers: 5 key: /gene= value: "kin" key: /codon_start= value: 1 key: /protein_id= value: "AAA91051.1" key: /db_xref= value: "GI:1209262" key: /translation= value: "MADNKQSFQAGQAAGRAEEKGNVLLMDKVKDAATAAGALQTAGQKITEAAGGAVNLVKEKTGMNK" ***Record from cor6_6.gb with the RecordParser sequence length: 497 locus: AF297471 definition: Brassica napus BN28a (BN28a) gene, complete cds. accession: ['AF297471'] reference title: BN28a, a low temperature-induced gene of Brassica napus reference title: Direct Submission feature key: source location: 1..497 num qualifiers: 3 key: /organism= value: "Brassica napus" key: /cultivar= value: "Cascade" key: /db_xref= value: "taxon:3708" feature key: mRNA location: join(<1..54,241..309,423..>497) num qualifiers: 2 key: /gene= value: "BN28a" key: /product= value: "BN28a" feature key: gene location: <1..>497 num qualifiers: 1 key: /gene= value: "BN28a" feature key: CDS location: join(1..54,241..309,423..497) num qualifiers: 7 key: /gene= value: "BN28a" key: /note= value: "low temperature-induced; similar to Brassica napus Kin1 in Accession Number M81224" key: /codon_start= value: 1 key: /product= value: "BN28a" key: /protein_id= value: "AAG13407.1" key: /db_xref= value: "GI:10121869" key: /translation= value: "MADNKQSFQAGQAAGRAEEKGNVLMDKVKDAATAAGASAQTAGQKITEAAGGAVNLVKEKTGMNK" ***Record from iro.gb with the RecordParser sequence length: 1326 locus: IRO125195 definition: Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 125195. accession: ['AL109817'] reference title: The European IMAGE consortium for integrated Molecular analysis of human gene transcripts reference title: Direct Submission feature key: source location: 1..1326 num qualifiers: 6 key: /organism= value: "Homo sapiens" key: /db_xref= value: "taxon:9606" key: /chromosome= value: "21" key: /clone= value: "IMAGE cDNA clone 125195" key: /clone_lib= value: "Soares fetal liver spleen 1NFLS" key: /note= value: "contains Alu repeat; likely to be be derived from unprocessed nuclear RNA or genomic DNA; encodes putative exons identical to FTCD; formimino transferase cyclodeaminase; formimino transferase (EC 2.1.2.5) /formimino tetrahydro folate cyclodeaminase (EC 4.3.1.4)" feature key: gene location: 341..756 num qualifiers: 1 key: /gene= value: "FTCD" feature key: exon location: 341..384 num qualifiers: 2 key: /gene= value: "FTCD" key: /number= value: 1 feature key: intron location: 385..617 num qualifiers: 2 key: /gene= value: "FTCD" key: /number= value: 1 feature key: exon location: 618..756 num qualifiers: 2 key: /gene= value: "FTCD" key: /number= value: 2 ***Record from pri1.gb with the RecordParser sequence length: 741 locus: HUGLUT1 definition: Human fructose transporter (GLUT5) gene, promoter and exon 1. accession: ['U05344'] reference title: Regulation of expression of the human fructose transporter (GLUT5) by cyclic AMP reference title: Direct Submission feature key: source location: 1..741 num qualifiers: 8 key: /organism= value: "Homo sapiens" key: /db_xref= value: "taxon:9606" key: /chromosome= value: "1" key: /map= value: "1p31" key: /clone= value: "lambda hGT5-157" key: /tissue_type= value: "liver" key: /clone_lib= value: "partial Hae III/Alu I fetal human liver library in lambda Ch4A of Maniatis" key: /dev_stage= value: "fetal" feature key: repeat_region location: 1..73 num qualifiers: 1 key: /rpt_family= value: "Alu" feature key: promoter location: 1..513 num qualifiers: 0 feature key: 5'UTR location: 514..609 num qualifiers: 1 key: /gene= value: "GLUT5" feature key: exon location: 514..642 num qualifiers: 3 key: /gene= value: "GLUT5" key: /number= value: 1 key: /product= value: "fructose transporter" ***Record from arab1.gb with the RecordParser sequence length: 86436 locus: AC007323 definition: Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I, complete sequence. accession: ['AC007323'] reference title: Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I reference title: Direct Submission reference title: Direct Submission reference title: Direct Submission reference title: Direct Submission feature key: source location: 1..86436 num qualifiers: 4 key: /organism= value: "Arabidopsis thaliana" key: /db_xref= value: "taxon:3702" key: /chromosome= value: "1" key: /clone= value: "T25K16" feature key: CDS location: join(3462..3615,3698..3978,4077..4307,4408..4797,4876..5028,5141..5332) num qualifiers: 7 key: /note= value: "containing similarity to NAM-like proteins gi|3695378" key: /codon_start= value: 1 key: /evidence= value: not_experimental key: /product= value: "T25K16.1" key: /protein_id= value: "AAF26460.1" key: /db_xref= value: "GI:6715633" key: /translation= value: "MEDQVGFGFRPNDEELVGHYLRNKIEGNTSRDVEVAISEVNICSYDPWNLRFQSKYKSRDAMWYFFSRRENNKGNRQSRTTVSGKWKLTGESVEVKDQWGFCSEGFRGKIGHKRVLVFLDGRYPDKTKSDWVIHEFHYDLLPEHQKLCNVTLFRFSSYFRLSLLSPMFYTDELMCLPPEILQRTYVICRLEYKGDDADILSAYAIDPTPAFVPNMTSSAGSVVNQSRQRNSGSYNTYSEYDSANHGQQFNENSNIMQQQPLQGSFNPLLEYDFANHGGQWLSDYIDLQQQVPYLAPYENESEMIWKHVIEENFEFLVDERTSMQQHYSDHRPKKPVSGVLPDDSSDTETGSMIFEDTSSSTDSVGSSDEPGHTRIDDIPSLNIIEPLHNYKAQEQPKQQSKEKVISSQKSECEWKMAEDSIKIPPSTNTVKQSWIVLENAQWNYLKNMIIGVLLFISVISWIILVG" feature key: CDS location: complement(join(6617..6953,7266..7351,7464..7603,7916..7998,8087..8166,8273..8368)) num qualifiers: 7 key: /note= value: "hypothetical protein" key: /codon_start= value: 1 key: /evidence= value: not_experimental key: /product= value: "T25K16.2" key: /protein_id= value: "AAF26477.1" key: /db_xref= value: "GI:6715650" key: /translation= value: "MAASEHRCVGCGFRVKSLFIQYSPGNIRLMKCGNCKEVADEYIECERMVCFNHFLSLFGPKVYRHVLYNAINPATVNIQVKNYFNSTSRCVVGEIHRQTYLKSPELIIDRSLLLRKSDEESSFSDSPVLLSIKVLIGVLSANAAFIISFAIATKGLLNEVSRESLLLQVWEFPMSVIFFVDILLLTSNSMALKGQTFKMFSMQIVFCCCYFGISQCKFVFKPVMTESTMTRCIAVCLIAHLIRFLVGQIFEPTIFLIQIGSLLQYMSYFFRIV" feature key: CDS location: complement(11566..12642) num qualifiers: 7 key: /note= value: "putative RAP2.8 protein gi|3695373" key: /codon_start= value: 1 key: /evidence= value: not_experimental key: /product= value: "T25K16.3" key: /protein_id= value: "AAF26476.1" key: /db_xref= value: "GI:6715649" key: /translation= value: "MDLSLAPTTTTSSDQEQDRDQELTSNIGASSSSGPSGNNNNLPMMMIPPPEKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGIGDESERSKLYIDWRHRPDMSLVQAHQFGNFGFNFNFPTTSQYSNRFHPLPEYNSVPIHRGLNIGNHQRSYYNTQRQEFVGYGYGNLAGRCYYTGSPLDHRNIVGSEPLVIDSVPVVPGRLTPVMLPPLPPPPSTAGKRLRLFGVNMECGNDYNQQEESWLVPRGEIGASSSSSSALRLNLSTDHDDDNDDGDDGDDDQFAKKGKSSLSLNFNP" feature key: CDS location: join(23221..24174,24244..24357,24412..24664,24743..25137,25226..25445,25527..25711,25783..25905,25994..26478,26564..26730,26814..26983,27074..27235,27320..27415,27505..28133,28314..28507,28592..28782,28862..30013,30112..30518,30604..30781) num qualifiers: 7 key: /note= value: "similar to UFD1 protein emb|CAB10321.1; similar to ESTs gb|H36434, gb|AI996152.1" key: /codon_start= value: 1 key: /evidence= value: not_experimental key: /product= value: "T25K16.4" key: /protein_id= value: "AAF26461.1" key: /db_xref= value: "GI:6715634" key: /translation= value: "MVMEDEPREATIKPSYWLDACEDISCDLIDDLVSEFDPSSVAVNESTDENGVINDFFGGIDHILDSIKNGGGLPNNGVSDTNSQINEVTVTPQVIAKETVKENGLQKNGGKRDEFSKEEGDKDRKRARVCSYQSERSNLSGRGHVNNSREGDRFMNRKRTRNWDEAGNNKKKRECNNYRRDGRDREVRGYWERDKVGSNELVYRSGTWEADHERDVKKVSGGNRECDVKAEENKSKPEERKEKVVEEQARRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLVYQVPPNKKHQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQFLKLTSFFLFSSTQVLVMTAQILLNILRHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKGVSSQVDCAIKIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWSLHETIKQMIAAVEEAAQASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHKLRAINYTLAELGQWCAYKVGQSFLSALQSDERVNFQVDVKFQESYLSEVVSLLQCELLEGAAAEKVAAEVGKPENGNAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVTPKVQSLIKLLLKYQHTADFRAIVFVERVVAALVLPKVRIKVFAELPSLSFIRCASMIGHNNSQEMKSSQMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYILMVERYIKSFKNYILIFVTTGHQISTDMSTCVTCRGNVSHAAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISIDAVPGTVYKVEATGAMVSLNSAVGLVHFYCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFEILEGPVCSSMRLAQQVDIIVSACKKLHEMGAFTDMLLPDKGSGQDAEKADQDDEGEPVPGTARHREFYPEGVADVLKGEWVSSGKEVCESSKLFHLYMYNVRCVDFGSSKDPFLSEVSEFAILFGNELDAEVLSMSMDLYVARAMITKASLAFKGSLDITENQLSSLKKFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPVTDNTSMEPIKGINWELVEKITKTTAWDNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHNIVFGQKSHPTYGIRGAVASFDVVRASGLLPVRDAFEKEVEEDLSKGKLMMADGCMVAEDLIGKIVTAAHSGKRFYVDSICYDMSAETSFPRKEGYLGPLEYNTYADYYKQKIYVVQDRLFFYFLHNLRLLRLYKSSSIMLFIRYGVDLNCKQQPLIKGRGVSYCKNLLSPRFEQSGESETVLDKTYYVFLPPELCVVHPLSGSLIRGAQRLPSIMRRVESMLLAVQLKNLISYPIPTSKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVEDDPDEVDGTLKNVNVPESVLKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQVNKIKKQSILFSKSFKCLTVWLLFVFQIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEKEIAESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKTFS" feature key: CDS location: complement(join(31084..31126,31223..31304,31341..31515,31635..31700,31790..31897,31984..32049,32133..32161,32249..32372)) num qualifiers: 7 key: /note= value: "putative inorganic pyrophosphatase gi|3510259; similar to ESTs gb|T42316, gb|AI994042.1, gb|AI994013.1, emb|Z29202" key: /codon_start= value: 1 key: /evidence= value: not_experimental key: /product= value: "T25K16.5" key: /protein_id= value: "AAF26475.1" key: /db_xref= value: "GI:6715648" key: /translation= value: "MSEETKDNQRLQRPAPRLNERILSSLSRRSVAAHPWHDLEIGPGAPQIFNVVVEITKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFVPRTLCEDNDPIDVLVIMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCVDDPEYKHYTDIKELPPHRLSEIRRFFEDCILFLQCSSLFISIDLSTNKKNENKEVAVNDFLPSESAVEAIQYSMDLYAEYILHTLRR" feature key: CDS location: complement(join(33694..34029,34103..35173,35269..35349,35432..35701,36326..36387,36512..36623,36725..36763)) num qualifiers: 7 key: /note= value: "putative late elongated hypocotyl emb|CAA07004; similar to ESTS gb|AI993521.1, gb|AA650979" key: /codon_start= value: 1 key: /evidence= value: not_experimental key: /product= value: "T25K16.6" key: /protein_id= value: "AAF26474.1" key: /db_xref= value: "GI:6715647" key: /translation= value: "MDTNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKFGKAHSFWFTFQLEKEAEVKGIPVCQALDIEIPPPRPKRKPNTPYPRKPGNNGTSSSQVSSAKDAKLVSSASSSQLNQAFLDLEKMPFSEKTSTGKENQDENCSGVSTVNKYPLPTKVSGDIETSKTSTVDNAVQDVPKKNKDKDGNDGTTVHSMQNYPWHFHADIVNGNIAKCPQNHPSGMVSQDFMFHPMREETHGHANLQATTASATTTASHQAFPACHSQDDYRSFLQISSTFSNLIMSTLLQNPAAHAAATFAASVWPYASVGNSGDSSTPMSSSPPSITAIAAATVAAATAWWASHGLLPVCAPAPITCVPFSTVAVPTPAMTEMDTVENTQPFEKQNTALQDQNLASKSPASSSDDSDETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLVDRSSCGSNTPSGSDAETDALDKMEKDKEDVKETDENQPDVIELNNRKIKMRDNNSNNNATTDSWKEVSEEGRIAFQALFARERLPQSFSPPQVAENVNRKQSDTSMPLAPNFKSQDSCAADQEGVVMIGVGTCKSLKTRQTGFKPYKRCSMEVKESQVGNINNQSDEKVCKRLRLEGEAST" feature key: CDS location: complement(join(38600..38756,38838..38989,39111..39516,39915..40031,40377..40579)) num qualifiers: 7 key: /note= value: "similar to Medicago truncatula MtN2 gi|3193308; similar to EST gb|H77065" key: /codon_start= value: 1 key: /evidence= value: not_experimental key: /product= value: "T25K16.7" key: /protein_id= value: "AAF26473.1" key: /db_xref= value: "GI:6715646" key: /translation= value: "MAGDMQGVRVVEKYSPVIVMVMSNVAMGSVNALVKKALDVGVNHMVIGAYRMAISALILVPFAYVLERASLMQFFFLLGLSYTSATVSCALVSMLPAITFALALIFRTENVKILKTKAGMLKVIGTLICISGALFLTFYKGPQISNSHSHSHGGASHNNNDQDKANNWLLGCLYLTIGTVLLSLWMLFQGTLSIKYPCKYSSTCLMSIFAAFQCALLSLYKSRDVNDWIIDDRFVITVIIYAGVVGQAMTTVATTWGIKKLGAVFASAFFPLTLISATLFDFLILHTPLYLGSVIGSLVTITGLYMFLWGKNKETESSTALSSGMDNEAQYTTPNKDNDSKSPV" feature key: CDS location: complement(join(45150..45261,45343..45656,45719..45847,46075..46313,47448..47684,47777..48554,48638..48868)) num qualifiers: 7 key: /note= value: "putative pyruvate dehydrogenase E1 alpha subunit gi|2454182; similar to ESTs emb|Z48417, gb|AW039459.1, gb|T15146, emb|Z48416, gb|AF066871, gb|T76832, gb|AI996061.1" key: /codon_start= value: 1 key: /evidence= value: not_experimental key: /product= value: "T25K16.8" key: /protein_id= value: "AAF26472.1" key: /db_xref= value: "GI:6715645" key: /translation= value: "MATAFAPTKLTATVPLHGSHENRLLLPIRLAPPSSFLGSTRSLSLRRLNHSNATRRSPVVSVQEVVKEKQSTNNTSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLTKSDSVVSTYRDHVHALSKGVSARAVMSELFGKVTGCCRGQGGSMHMFSKEHNMLGGFAFIGEGIPVATGAAFSSKYRREVLKQDCDDVTVAFFGDGTCNNGQFFECLNMAALYKLPIIFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAVTRARRGEGPTLVECETYRFRGHSLADPDELRDAAEKAKYAARDPIAALKKYLIENKLAKEAELKSIEKKIDELVEEAVEFADASPQPGRSQLLENVFADPKGFGIGPDGRYRSQPLQIKVSSSELSVLDEEKEEEVVKGEAEPNKDSVVSKAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTVRARETKKQEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTVNNMKVAESSSEKVSRRVSRKPTVLLLLQRHLLDTNNV" feature key: CDS location: complement(join(49986..50039,50121..50333,50585..50656)) num qualifiers: 7 key: /note= value: "similar to acidic ribosomal protein p1 gi|2252857; similar to ESTs gb|T42111, gb|AI099979, gb|AA728491" key: /codon_start= value: 1 key: /evidence= value: not_experimental key: /product= value: "T25K16.9" key: /protein_id= value: "AAF26471.1" key: /db_xref= value: "GI:6715644" key: /translation= value: "MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD" feature key: CDS location: join(51941..52048,52136..52432,52640..52885,53186..53326,53405..54196) num qualifiers: 7 key: /note= value: "hypothetical protein" key: /codon_start= value: 1 key: /evidence= value: not_experimental key: /product= value: "T25K16.10" key: /protein_id= value: "AAF26462.1" key: /db_xref= value: "GI:6715635" key: /translation= value: "MGKKNGSSSWLTAVKRAFRSPTKKDHSNDVEEDEEKKREKRRWFRKPATQESPVKSSGISPPAPQEDSLNVNSKPSPETAPSYATTTPPSNAGKPPSAVVPIATSASKTLAPRRIYYARENYAAVVIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQSRVLDQRKRLSHDGSRKSAFSDSHAVFESRYLQDLSDRQSMSREGSSAAEDWDDRPHTIDAVKVMLQRRRDTALRHDKTNLSQAFSQKMWRTVGNQSTEGHHEVELEEERPKWLDRWMATRPWDKRASSRASVDQRVSVKTVEIDTSQPYSRTGAGSPSRGQRPSSPSRTSHHYQSRNNFSATPSPAKSRPILIRSASPRCQRDPREDRDRAAYSYTSNTPSLRSNYSFTARSGCSISTTMVNNASLLPNYMASTESAKARIRSHSAPRQRPSTPERDRAGLVKKRLSYPVPPPAEYEDNNSLRSPSFKSVAGSHFGGMLEQQSNYSSCCTESNGVEISPASTSDFRNWLR" feature key: CDS location: complement(57094..58680) num qualifiers: 7 key: /note= value: "putative fatty acid elongase 3-ketoacyl-coA synthase 1 gi|4091810; similar to ESTs gb|T42377, gb|N96054, gb|T44368, gb|AI999379.1, emb|Z26005" key: /codon_start= value: 1 key: /evidence= value: not_experimental key: /product= value: "T25K16.11" key: /protein_id= value: "AAF26470.1" key: /db_xref= value: "GI:6715643" key: /translation= value: "MERTNSIEMDRERLTAEMAFRDSSSAVIRIRRRLPDLLTSVKLKYVKLGLHNSCNVTTILFFLIILPLTGTVLVQLTGLTFDTFSELWSNQAVQLDTATRLTCLVFLSFVLTLYVANRSKPVYLVDFSCYKPEDERKISVDSFLTMTEENGSFTDDTVQFQQRISNRAGLGDETYLPRGITSTPPKLNMSEARAEAEAVMFGALDSLFEKTGIKPAEVGILIVNCSLFNPTPSLSAMIVNHYKMREDIKSYNLGGMGCSAGLISIDLANNLLKANPNSYAVVVSTENITLNWYFGNDRSMLLCNCIFRMGGAAILLSNRRQDRKKSKYSLVNVVRTHKGSDDKNYNCVYQKEDERGTIGVSLARELMSVAGDALKTNITTLGPMVLPLSEQLMFLISLVKRKMFKLKVKPYIPDFKLAFEHFCIHAGGRAVLDEVQKNLDLKDWHMEPSRMTLHRFGNTSSSSLWYEMAYTEAKGRVKAGDRLWQIAFGSGFKCNSAVWKALRPVSTEEMTGNAWAGSIDQYPVKVVQ" feature key: CDS location: complement(join(59508..59665,61670..61826,63133..63513)) num qualifiers: 7 key: /note= value: "hypothetical protein" key: /codon_start= value: 1 key: /evidence= value: not_experimental key: /product= value: "T25K16.12" key: /protein_id= value: "AAF26469.1" key: /db_xref= value: "GI:6715642" key: /translation= value: "MEKRSDSESVEILGDWDSPPPEERIVMVSVPTSPESDYARSNQPKEIESRVSDKETASASGEVAARRVLPPWMDPSYEWGGGKWKVDGRKNKNKKEKEKEKEEIIPFKEIIEALLGNSGDKVQQDNKVFEVAPSLHVVELRKTGDDTLEFHKVYFRFNLYQPVQLPLILFVVIRFSMLKIIHYHQFTMAHIKEFVCMWDTHLYKEITNLNIWDTLSSTLVLAIWTVNASHE" feature key: CDS location: complement(join(64100..64177,64272..64358,64453..64509,64603..64719,64812..64919,65033..65158,65265..65354,65435..65566,65809..65862,65964..66044,66152..66259,66380..66451,66537..66599,67026..67214)) num qualifiers: 7 key: /note= value: "similar to wpk4 protein kinase dbj|BAA34675; similar to ESTs dbj|AB015122, gb|AI997157.1" key: /codon_start= value: 1 key: /evidence= value: not_experimental key: /product= value: "T25K16.13" key: /protein_id= value: "AAF26468.1" key: /db_xref= value: "GI:6715641" key: /translation= value: "MSGSRRKATPASRTRVGNYEMGRTLGEGSFAKVKYAKNTVTGDQAAIKILDREKVFRHKMVEQLKREISTMKLIKHPNVVEIIEVMASKTKIYIVLELVNGGELFDKIAQQGRLKEDEARRYFQQLINAVDYCHSRGVYHRDLKPENLILDANGVLKVSDFGLSAFSRQVREDGLLHTACGTPNYVAPEVLSDKGYDGAAADVWSCGVILFVLMAGYLPFDEPNLMTLYKRVRICKAEFSCPPWFSQGAKRVIKRILEPNPITRISIAELLEDEWFKKGYKPPSFDQDDEDITIDDVDAAFSNSKECLVTEKKEKPVSMNAFELISSSSEFSLENLFEKQAQLVKKETRFTSQRSASEIMSKMEETAKPLGFNVRKDNYKIKMKGDKSGRKGQLSVATEVFEVAPSLHVVELRKTGGDTLEFHKVCDSFYKNFSSGLKDVVWNTDAAAEEQKQ" feature key: CDS location: complement(join(69831..69987,70534..70670,70743..71357,71644..71700)) num qualifiers: 7 key: /note= value: "similar to ataxia-telangiectasia group D protein pir|A49618" key: /codon_start= value: 1 key: /evidence= value: not_experimental key: /product= value: "T25K16.14" key: /protein_id= value: "AAF26467.1" key: /db_xref= value: "GI:6715640" key: /translation= value: "MVSDLPLDEDDIALLKSPYCDDGGDEDVNSAPNIFTYDNVPLKKRHYLGTSDTFRSFEPLNEHACIVCDIADDGVVPCSGNECPLAVHRKCVELDCEDPATFYCPYCWFKEQATRSTALRTRGVAAAKTLVQYGCSELRSGDIVMTRENSQLENGSDNSLPMQLHENLHQLQELVKHLKARNSQLDESTDQFIDMEKSCGEAYAVVNDQPKRVLWTVNEEKMLREGVEKFSDTINKNMPWKKILEMGKGIFHTTRNSSDLKDKWRNMVRIIILIWLRSRLTSSSSSQRSEIKMERERNAGVMKKMSPTGTIQRLEFVGWYL" feature key: CDS location: join(72285..72371,72789..72865,72989..73097,73190..73442,73524..73585) num qualifiers: 7 key: /note= value: "similar to SYT gi|2252866; similar to ESTs emb|F14390, gb|H36066, emb|F14391" key: /codon_start= value: 1 key: /evidence= value: not_experimental key: /product= value: "T25K16.15" key: /protein_id= value: "AAF26463.1" key: /db_xref= value: "GI:6715636" key: /translation= value: "MQQQQSPQMFPMVPSIPPANNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLAAIADAQPPPPTPGPSPSTAVAAQMATPHSGMQPPSYFMQHPQASPAGIFAPRGPLQFGSPLQFQDPQQQQQIHQQAMQGHMGIRPMGMTNNGMQHAMQQPETGLGGNVGLRGGKQDGADGQGKDDGK" feature key: CDS location: complement(join(73807..73990,74036..74145)) num qualifiers: 7 key: /note= value: "similar to stress-induced protein OZI1 precursor pir|S59544; similar to EST gb|AI995719.1" key: /codon_start= value: 1 key: /evidence= value: not_experimental key: /product= value: "T25K16.16" key: /protein_id= value: "AAF26466.1" key: /db_xref= value: "GI:6715639" key: /translation= value: "MASGGKAKYIIGALIGSFGISYIFDKVISDNKIFGGKDDLNGYLLVKISGTTPGTVSNKEWWAATDEKFQAWPRTAGPPVVMNPISRQNFIVKTRPE" feature key: CDS location: join(75335..76249,76516..76653,76733..76982,77015..77148) num qualifiers: 7 key: /note= value: "putative reverse transcriptase gb|AAD17395" key: /codon_start= value: 1 key: /evidence= value: not_experimental key: /product= value: "T25K16.17" key: /protein_id= value: "AAF26464.1" key: /db_xref= value: "GI:6715637" key: /translation= value: "MKEDRRLPHKRDAFQFLKTKAAYVIVIVLTYAFGYFSAYHYHQPLQQQLPPSTTAVETTKPQVCSIDNFRVTTPCGNLVPPELIRQTVIDRIFNGTSPYIDFPPPHAKKFLRPKRIKGWGSYGAVFENLIRRVKPKTIVEVGSFLGASAIHMANLTRRLGLEETQILCVDDFRGWPGFRDRFKDMALVNGDVLLMYQFMQNVVISDFSGSILPVPFSTGSALEKLCEWGVTADLVEIDAGHDFNSAWADINRAVRILRPGGVIFGHDYFTAADNRGVRRAVNLFAEINRLKVKTDGQHWVIDSVKVINKGTRFAISKTVAKIKEDANQWFFAQVLENQDLVNEQAVHISVKVLRGFLRDEHGKVLIHARRSFASVHSKLDATFLCWQWAMESMKSLRVDKIIFASEDNDLIGAVTRLPSWPSYKFQIHFLLGELIRSSNLGAHLIAKSVTMEDRRQSYVATGFPFWLKHLFEKERSIA" feature key: CDS location: complement(join(82723..82738,82751..83373,83586..84581)) num qualifiers: 7 key: /note= value: "putative cytochrome P450 gi|3831440" key: /codon_start= value: 1 key: /evidence= value: not_experimental key: /product= value: "T25K16.18" key: /protein_id= value: "AAF26465.1" key: /db_xref= value: "GI:6715638" key: /translation= value: "MFSLNMRTEIESLWVFALASKFNIYMQQHFASLLVAIAITWFTITIVFWSTPGGPAWGKYFFTRRFISLDYNRKYKNLIPGPRGFPLVGSMSLRSSHVAHQRIASVAEMSNAKRLMAFSLGDTKVVVTCHPAVAKEILNSSVFADRPVDETAYGLMFNRAMGFAPNGTYWRTLRRLGSNHLFNPKQIKQSEDQRRVIATQMVNAFARNPKSACAVRDLLKTASLCNMMGLVFGREYELESNNNLESECLKGLVEEGYDLLGTLNWTDHLPWLAGLDFQQIRFRCSQLVPKVNLLLSRIIHEQRAATGNFLDMLLSLQGSEKLSESDMVAVLWEMIFRGTDTVAVLVEWVLARIVMHPKVQLTVHDELDRVVGRSRTVDESDLPSLTYLTAMIKEVLRLHPPGPLLSWARLSITDTSVDGYHVPAGTTAMVNMWAIARDPHVWEDPLEFKPERFVAKEGEAEFSVFGSDLRLAPFGSGKRVCPGKNLGLTTVSFWVATLLHEFEWLPSVEANPPDLSEVLRLSCEMACPLIVNVSSRRKIIAWMF" ***Record from protein_refseq.gb with the RecordParser sequence length: 182 locus: NP_034640 definition: interferon beta, fibroblast [Mus musculus]. accession: ['NP_034640'] reference title: structure and expression of a cloned cdna for mouse interferon-beta feature key: source location: 1..182 num qualifiers: 4 key: /organism= value: "Mus musculus" key: /db_xref= value: "taxon:10090" key: /chromosome= value: "4" key: /map= value: "4 42.6 cM" feature key: Protein location: 1..182 num qualifiers: 1 key: /product= value: "interferon beta, fibroblast" feature key: sig_peptide location: 1..21 num qualifiers: 0 feature key: Region location: 1..182 num qualifiers: 3 key: /region_name= value: "Interferon alpha/beta domain" key: /db_xref= value: "CDD:pfam00143" key: /note= value: "interferon" feature key: mat_peptide location: 22..182 num qualifiers: 1 key: /product= value: "ifn-beta" feature key: Region location: 56..170 num qualifiers: 3 key: /region_name= value: "Interferon alpha, beta and delta." key: /db_xref= value: "CDD:IFabd" key: /note= value: "IFabd" feature key: CDS location: 1..182 num qualifiers: 4 key: /gene= value: "Ifnb" key: /db_xref= value: "LocusID:15977" key: /db_xref= value: "MGD:MGI:107657" key: /coded_by= value: "NM_010510.1:21..569" ***Record from extra_keywords.gb with the RecordParser sequence length: 154329 locus: DMBR25B3 definition: Drosophila melanogaster BAC clone BACR25B3. accession: ['AL138972'] reference title: Sequencing the distal X chromosome of Drosophila melanogaster reference title: Direct Submission feature key: source location: 1..154329 num qualifiers: 3 key: /organism= value: "Drosophila melanogaster" key: /db_xref= value: "taxon:7227" key: /clone= value: "BAC BACR25B3" feature key: gene location: complement(22148..27773) num qualifiers: 2 key: /gene= value: "EG:BACR25B3.11" key: /note= value: feature key: CDS location: complement(join(22148..22299,22375..22791,22860..23560,23630..24555,24616..24888,25024..25178,26677..27009,27623..27773)) num qualifiers: 6 key: /gene= value: "EG:BACR25B3.11" key: /note= value: "/prediction=(method:''genefinder'', version:''084'', score:''105.71''); /prediction=(method:''genscan'', version:''1.0''); /match=(desc:''BASEMENT MEMBRANE-SPECIFIC HEPARAN SULFATE PROTEOGLYCAN CORE PROTEIN PRECURSOR (HSPG) (PERLECAN) (PLC)'', species:''Homo sapiens (Human)'', ranges:(query:24292..24549, target:SWISS-PROT::P98160:3713..3628, score:''201.00''), (query:24016..24291, target:SWISS-PROT::P98160:3815..3724, score:''139.00''), (query:23857..24006, target:SWISS-PROT::P98160:3866..3817, score:''99.00''), (query:24052..24327, target:SWISS-PROT::P98160:4059..3968, score:''143.00''), (query:24046..24312, target:SWISS-PROT::P98160:4341..4253, score:''116.00''), (query:23806..23901, target:SWISS-PROT::P98160:4177..4146, score:''76.00''), (query:23203..23382, target:SWISS-PROT::P98160:4062..4003, score:''116.00''), (query:22523..22777, target:SWISS-PROT::P98160:4288..4204, score:''112.00''), (query:22235..22300, target:SWISS-PROT::P98160:4358..4337, score:''64.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''GM03359.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM03359 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:25024..25235, target:EMBL::AA801707:438..227, score:''1024.00''), (query:24851..24898, target:EMBL::AA801707:476..429, score:''204.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''LD08615.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD08615 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:24629..24727, target:EMBL::AA264808:99..1, score:''495.00''), (query:24417..24566, target:EMBL::AA264808:250..101, score:''687.00''), (query:24048..24420, target:EMBL::AA264808:618..246, score:''1847.00''), (query:23986..24036, target:EMBL::AA264808:678..628, score:''237.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''HL02745.5prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL02745 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:23944..24045, target:EMBL::AA697546:103..2, score:''510.00''), (query:23630..23943, target:EMBL::AA697546:416..103, score:''1570.00''), (query:23419..23561, target:EMBL::AA697546:558..416, score:''715.00''), (query:23306..23417, target:EMBL::AA697546:670..559, score:''524.00''), (query:23280..23316, target:EMBL::AA697546:695..659, score:''167.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''GM08137.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM08137 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:23235..23278, target:EMBL::AA696682:44..1, score:''139.00''), (query:22986..23251, target:EMBL::AA696682:294..29, score:''1321.00'')), method:''blastn'', version:''1.4.9'')" key: /codon_start= value: 1 key: /protein_id= value: "CAB72284.1" key: /db_xref= value: "GI:6946669" key: /translation= value: "MACNCNQSMIYQSNERRDYNCPGAPQYPYNRFKGGVSLKDTPCMVLYICADFKSSKLSSAKPIISGPATTRAPAISYVCQPNDFKCVSHPHTCVRANMVCDGIYDCTDHSDEFNCIAGKGSGKSESNSGSGSFKRWKKSPEQGRRSLAKAVKNRKLRKRSFAKSRDYSLKLDDQSSNLRAGESTDVECYSSDDTYTDVVWERSDGAPLSNNVRQVGNRLVISNVSPSDAGNYVCKCKTDEGDLYTTSYKLEVEDQPHELKSSKIVYAKVGANADLQCGADESRQPTYRWSRQYGQLQAGRSLMNEKLSLDSVQANDAGTYICTAQYADGETADFPNILVVTGAIPQFRQEPRSYMSFPTLPNSSFKFNFELTFRPENGDGLLLFNGQTRGSGDYIALSLKDRYAEFRFDFGGKPMLVRAEEPLALNEWHTVRVSRFKRDGYIQVDEQHPVAFPTLQQIPQLDLIEDLYIGGVPNWELLPADAVSQQVGFVGCISRLTLQGRTVELIREAKYKEGITDCRPCAQGPCQNKGVCLESQTEQAYTCICQPGWTGRDCAIEGTQCTPGVCGAGRCENTENDMECLCPLNRSGDRCQYNEILNEHSLNFKGNSFAAYGTPKVTKVNITLSVRPASLEDSVILYTAESTLPSGDYLALVLRGGHAELLINTAARLDPVVVRSAEPLPLNRWTRIEIRRRLGEGILRVGDGPERKAKAPGSDRILSLKTHLYVGGYDRSTVKVNRDVNITKGFDGCISRLYNFQKPVNLLADIKDAANIQSCGETNMIGGDEDSDNEPPVPPPTPDVHENELQPYAMAPCASDPCENGGSCSEQEDVAVCSCPFGFSGKHCQEHLQLGFNASFRGDGYVELNRSHFQPALEQSYTSMGIVFTTNKPNGLLFWWGQEAGEEYTGQDFIAAAVVDGYVEYSMRLDGEEAVIRNSDIRVDNGERHIVIAKRDENTAILEVDRMLHSGETRPTSKKSMKLPGNVFVGGAPDLEVFTGFRYKHNLNGCIVVVEGETVGQINLSSAAVNGVNANVCPA" feature key: gene location: complement(29926..33978) num qualifiers: 1 key: /gene= value: "EG:BACR25B3.10" feature key: CDS location: complement(join(29926..30108,30270..30519,30617..31076,31197..31591,31659..31836,32324..32634,32686..33289,33533..33713,33817..33978)) num qualifiers: 6 key: /gene= value: "EG:BACR25B3.10" key: /note= value: "/prediction=(method:''genefinder'', version:''084'', score:''98.50''); /prediction=(method:''genscan'', version:''1.0''); /match=(desc:''BASEMENT MEMBRANE-SPECIFIC HEPARAN SULFATE PROTEOGLYCAN CORE PROTEIN PRECURSOR (HSPG) (PERLECAN) (PLC)'', species:''Homo sapiens (Human)'', ranges:(query:33540..33716, target:SWISS-PROT::P98160:2716..2658, score:''113.00''), (query:32859..32963, target:SWISS-PROT::P98160:3341..3307, score:''63.00''), (query:33150..33215, target:SWISS-PROT::P98160:3530..3509, score:''73.00''), (query:32973..33089, target:SWISS-PROT::P98160:3588..3550, score:''71.00''), (query:32358..32567, target:SWISS-PROT::P98160:3650..3581, score:''107.00''), (query:31222..31323, target:SWISS-PROT::P98160:2620..2587, score:''80.00''), (query:31489..31572, target:SWISS-PROT::P98160:3387..3360, score:''72.00''), (query:31495..31593, target:SWISS-PROT::P98160:3575..3543, score:''60.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''GM02481.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM02481 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:30008..30036, target:EMBL::AA695253:29..1, score:''145.00''), (query:29549..30004, target:EMBL::AA695253:487..32, score:''2262.00'')), method:''blastn'', version:''1.4.9'')" key: /codon_start= value: 1 key: /protein_id= value: "CAB72285.1" key: /db_xref= value: "GI:6946670" key: /translation= value: "MFLATLDTNDPTDIGTEDPVLTQIIVSIQKPEITIVPVGGSMTLSCSGRMRWSNSPVIVNWYKENSRLPENVEVQGGNLYLYDLQVSDSGVYICQAVNNETASVFKDTVSITITKKDQLSPAEIVNLPSHVTFEEYVNNEIICEVLGNPAPRVTWARVDGHADAQSTRTYDNRLIFDSPRKSDEGRYRCQAENDQNRDEKYVIVYVQSNPPQPPPQQDRLYITPEEINGLAGESFQLNCQFTSVASLRYDWSHNGRSLSSSPARNVEIRGNTLEVRDASESDSGVYTCVAYDVRTRRNFTESARVNIDRREEQPFGVLMRMMILTDSLINHSNKPIIESLEQNILIIQGEDYSITCEASGSPYPSIKWAKVHDFMPENVHISGNVLTIYGARFENRGVYSCVAENDHGSDLSSTSIDIEPRERPSVKIVSAPLQTFSVGAPASLYCTVEGIPDPTVEWVRVDGQPLSPRHKIQSPGYMVIDDIQLEDSGDYECRAKNIVGEATGVATITVQEPTLVQIIPDNRDLRLTEGDELSLTCVGSGVPNPEVEWVNEMALKRDLYSPPSNTAILKIYRVTKADAGIYTCHGKNEAGSDEAHVRVEVQERRGDIGGVDDDSDRDPINYNPPQQQNPGIHQPGSNQLLATDIGDNVTLTCDMFQPLNTRWERVDGAPLPRNAYTIKNRLEIVRVEQQNLGQYRCNGIGRDGNVKTYFVKELVLMPLPRIRFYPNIPLTVEAGQNLDVHCQVENVRPEDVHWSTDNNRPLPSSVRIVGSVLRFVSITQAAAGEYRCSAFNQYGNRSQIARVAVKKPADFHQVPQSQLQRHREGENIQLQCTVTDQYGVRAQDNVEFNWFRDDRRPLPNNARTDSQILVLTNLRPEDAGRYICNSYDVDRGQQLPEVSIDLQVLSE" feature key: gene location: complement(36119..56153) num qualifiers: 1 key: /gene= value: "EG:BACR25B3.1" feature key: CDS location: complement(join(36119..37213,37281..39517,39656..40042,40345..40434,40519..40612,40681..40814,41546..41620,41855..42085,42188..42415,42751..42876,43604..43837,44241..44438,44812..44928,45148..45233,45661..45793,45976..46125,46518..46688,47222..47315,47683..47831,48411..48878,49437..49562,49763..49876,49971..50102,50319..50441,50827..50937,52849..52966,56031..56153)) num qualifiers: 6 key: /gene= value: "EG:BACR25B3.1" key: /note= value: "/prediction=(method:''genscan'', version:''1.0''); /prediction=(method:''genefinder'', version:''084''); /match=(desc:''LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN PRECURSOR (LRP)'', species:''Caenorhabditis elegans'', ranges:(query:50831..50941, target:SWISS-PROT::Q04833:1221..1185, score:''95.00''), (query:50840..51025, target:SWISS-PROT::Q04833:2865..2804, score:''102.00''), (query:50828..50935, target:SWISS-PROT::Q04833:3788..3753, score:''119.00''), (query:50323..50394, target:SWISS-PROT::Q04833:3706..3683, score:''77.00''), (query:50326..50433, target:SWISS-PROT::Q04833:1263..1228, score:''120.00''), (query:49948..50079, target:SWISS-PROT::Q04833:2917..2874, score:''88.00''), (query:49432..49587, target:SWISS-PROT::Q04833:4085..4034, score:''102.00''), (query:49429..49560, target:SWISS-PROT::Q04833:3915..3872, score:''97.00''), (query:48622..48720, target:SWISS-PROT::Q04833:1302..1270, score:''99.00''), (query:47698..47799, target:SWISS-PROT::Q04833:3996..3963, score:''88.00''), (query:47686..47775, target:SWISS-PROT::Q04833:3835..3806, score:''59.00''), (query:47692..47787, target:SWISS-PROT::Q04833:4041..4010, score:''83.00''), (query:47229..47315, target:SWISS-PROT::Q04833:3742..3714, score:''88.00''), (query:47220..47312, target:SWISS-PROT::Q04833:3829..3799, score:''67.00''), (query:47232..47318, target:SWISS-PROT::Q04833:3866..3838, score:''78.00''), (query:46552..46656, target:SWISS-PROT::Q04833:1344..1310, score:''95.00''), (query:46543..46650, target:SWISS-PROT::Q04833:3951..3916, score:''98.00''), (query:45983..46129, target:SWISS-PROT::Q04833:2870..2822, score:''82.00''), (query:45971..46096, target:SWISS-PROT::Q04833:4089..4048, score:''82.00''), (query:45678..45764, target:SWISS-PROT::Q04833:3666..3638, score:''80.00''), (query:45128..45238, target:SWISS-PROT::Q04833:94..58, score:''100.00''), (query:45158..45268, target:SWISS-PROT::Q04833:3990..3954, score:''80.00''), (query:44263..44379, target:SWISS-PROT::Q04833:85..47, score:''77.00''), (query:44251..44367, target:SWISS-PROT::Q04833:3995..3957, score:''100.00''), (query:43605..43688, target:SWISS-PROT::Q04833:2994..2967, score:''84.00''), (query:42764..42877, target:SWISS-PROT::Q04833:2951..2914, score:''77.00''), (query:42180..42377, target:SWISS-PROT::Q04833:260..195, score:''148.00''), (query:42234..42419, target:SWISS-PROT::Q04833:3199..3138, score:''106.00''), (query:39807..40013, target:SWISS-PROT::Q04833:2901..2833, score:''167.00''), (query:39645..39857, target:SWISS-PROT::Q04833:3138..3068, score:''151.00''), (query:39846..40046, target:SWISS-PROT::Q04833:3241..3175, score:''132.00''), (query:39654..39866, target:SWISS-PROT::Q04833:3913..3843, score:''201.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2 PRECURSOR (MEGALIN) (GLYCOPROTEIN 330)'', species:''Homo sapiens (Human)'', ranges:(query:50834..50935, target:SWISS-PROT::P98164:2733..2700, score:''99.00''), (query:50840..50947, target:SWISS-PROT::P98164:3063..3028, score:''94.00''), (query:50831..50926, target:SWISS-PROT::P98164:3918..3887, score:''102.00''), (query:50326..50433, target:SWISS-PROT::P98164:1222..1187, score:''107.00''), (query:50302..50394, target:SWISS-PROT::P98164:3762..3732, score:''91.00''), (query:49773..49904, target:SWISS-PROT::P98164:2939..2896, score:''90.00''), (query:49438..49578, target:SWISS-PROT::P98164:217..171, score:''116.00''), (query:49429..49545, target:SWISS-PROT::P98164:3796..3758, score:''108.00''), (query:48622..48720, target:SWISS-PROT::P98164:3544..3512, score:''94.00''), (query:48595..48708, target:SWISS-PROT::P98164:3720..3683, score:''86.00''), (query:47701..47814, target:SWISS-PROT::P98164:2817..2780, score:''90.00''), (query:47692..47799, target:SWISS-PROT::P98164:3674..3639, score:''60.00''), (query:47217..47366, target:SWISS-PROT::P98164:3716..3667, score:''96.00''), (query:46543..46647, target:SWISS-PROT::P98164:1101..1067, score:''107.00''), (query:46552..46656, target:SWISS-PROT::P98164:3873..3839, score:''84.00''), (query:45989..46126, target:SWISS-PROT::P98164:3832..3787, score:''98.00''), (query:45149..45274, target:SWISS-PROT::P98164:2775..2734, score:''99.00''), (query:44780..44893, target:SWISS-PROT::P98164:268..231, score:''76.00''), (query:44813..44905, target:SWISS-PROT::P98164:1223..1193, score:''73.00''), (query:44251..44361, target:SWISS-PROT::P98164:3630..3594, score:''119.00''), (query:43602..43700, target:SWISS-PROT::P98164:179..147, score:''97.00''), (query:43674..43781, target:SWISS-PROT::P98164:191..156, score:''90.00''), (query:43584..43685, target:SWISS-PROT::P98164:1107..1074, score:''89.00''), (query:42758..42865, target:SWISS-PROT::P98164:1264..1229, score:''79.00''), (query:42204..42413, target:SWISS-PROT::P98164:2810..2741, score:''136.00''), (query:42189..42377, target:SWISS-PROT::P98164:3027..2965, score:''125.00''), (query:42186..42293, target:SWISS-PROT::P98164:3110..3075, score:''109.00''), (query:42198..42389, target:SWISS-PROT::P98164:3584..3521, score:''137.00''), (query:42309..42422, target:SWISS-PROT::P98164:3793..3756, score:''95.00''), (query:39654..39791, target:SWISS-PROT::P98164:63..18, score:''132.00''), (query:39786..40049, target:SWISS-PROT::P98164:1183..1096, score:''230.00''), (query:39657..39890, target:SWISS-PROT::P98164:3109..3032, score:''200.00''), (query:39780..39983, target:SWISS-PROT::P98164:3756..3689, score:''194.00''), (query:39618..39761, target:SWISS-PROT::P98164:3845..3798, score:''105.00''), (query:39651..39779, target:SWISS-PROT::P98164:3964..3922, score:''128.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''GM06086.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM06086 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:50852..51290, target:EMBL::AA802674:672..234, score:''2195.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''SD04592.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD04592 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:37280..37708, target:EMBL::AI532939:429..1, score:''2136.00''), (query:37097..37217, target:EMBL::AI532939:545..425, score:''569.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''GH03622.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH03622 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:36446..37075, target:EMBL::AI063674:1..630, score:''3150.00'')), method:''blastn'', version:''1.4.9''); EST embl|AA802674|AA802674 comes from the 5' UTR" key: /codon_start= value: 1 key: /protein_id= value: "CAB72286.1" key: /db_xref= value: "GI:6946671" key: /translation= value: "MLLLQLLLQLLLLGKLLLGKTPPTVFGFRLLFAAFRFPLSLHFPHRMHDHFFVRGDTHSCGWKNSTTFTIRISAIYRYLNQCQANEFRCNNGDCIDARKRCNNVSDCSEGEDENEECPAACSGMEYQCRDGTRCISVSQQCDGHSDCSDGDDEEHCDGIVPKLRYTCPKGKFTCRDLSCISIVHRCDGRADCPNDRSDEEGCPCLYDKWQCDDGTCIAKELLCNGNIDCPEDISDERYCEGGYDSEECRFDEFHCGTGECIPMRQVCDNIYDCNDYSDEVNCVEGEEEDRVGIPIGHQPWRPASKHDDWLHEMDTSEYQVYQPSNVYEKANSQNPCASNQFRCTTSNVCIPLHLRCDGFYHCNDMSDEKSCEQYQRHTTTRRPLTLATPTSRITTQGPGLLERRNTTTATEASRWPWATKTTTIATTTSNPITTVGVANSPPQTCLENIEFACHNRDCISIESVCDGIPDCGRNEDEDDALCKCSGDKYKCQRGGGCIPKSQVCDGKPQCHDRSDESACHLHGRLNKTRLGVKCLESQYQCGDGSCISGYKRCNGIHDCADASDEYNCIYDYEDTYDTDPNNNPLNECDILEFECDYSQCLPLEKKCDGYADCEDMSDELECQSYTDHCLESEFECDSYCLPRDQLCNGIPNCQDGSDERNCTFCREDAYLCNTGECVADNQRCNGIADCADGSDERHCARIYCPPNKLACNGTCVSRRIKCDGIRDCLDGYDEMYCPETNNHYPTQNVNVIRPKLGPNPIPKSCRPHEWQCANLECIDSSLQCNEIKDCSDGSDEELSVCFGTATTRLKPSDCSPEQFYCDESCYNRSVRCNGHVDCSDGSDEVGCSLPCPQHQCPSGRCYTESERCDRHRHCEDGSDEANCTAILCKDNEFLCFDRQFCINATQQCDGYYDCRDFSDEQNCIGCYANQFRCNNGDCVSGSAPCNGYSECSDHSDELNCGGTQECLPNQFRCNSGQCVSSSVRCNGRTDCQDSSDEQNCGHRHTEVSQGLETTGVFTTSTTSTTAMTPLRIICPPTSFKCENGPCISLGLKCNGRVDCPYDGSDEADCGQISNDIDPADSNDRRPNQLNLKTYPDSQIIKESREVIFRCRDEGPARAKVKWSRPGGRPLPPGFTDRNGRLEIPNIRVEDAGTYVCEAVGYASYIPGQQVTVNLNVERSWGENKYEEIRSNRIRYGTVPHIDLEFFGLDNDVGSRPESACTEYQATCMNGECIDKSSICDGNPDCSDASDEQSCSLGLKCQPNQFMCSNSKCVDRTWRCDGENDCGDNSDETSCDPEPSGAPCRYNEFQCRSGHCIPKSFQCDNVPDCTDGTDEVGCMAPLPIRPPPQSVSLLEYEVLELTCVATGTPTPTIVWRLNWGHVPDKCESKSYGGTGTLRCPDMRPQDSGAYSCEIINTRGTHFVNPDTIVTVRPVRTDVCEAGFFNMLARKAEECVQCFCFGVAKACDSANLFTYAIHPPILSHRVVSVELSPLRQIVINEAAPGQDLLTLLHGVQFRATNVHFSGRETPYLALPADYMGNQLKSYGGNLRYEVNYRGSGRPVNGPDVIITGNRFTLTYRVRTQPGQNNRVSIPFVPGGWQKPDGRKASREEIMMILANVDNILIRLGYLDSTAREVDLINIALDSAGTADKGLGSASLVEKCQCPPGYVGDSCESCASGYVRQPGGPWLGHCVPFIPDSCPSGTYGDPRRGVPCKECPCPLTGSNNFASGCQQSPDGDVVCRCNEGYTGRRCEQCAAGYQGNPLAAGGICRRIPDTSCNVDGTYSVHSNGTCQCKDSVIGEQCDTCKSKSFHLNSFTYTGCIECFCSGVGLDCDSSTWYRDQVTSTFGRSRVDHGFVLVTNYMQPTPDTVPVSMAAEPNALSFIGSADQSGNTLYWSLPAAFLGNKLSSYGGKLTYTLSYSPLPNGIMSRNSAPDVVIKSGEDLRLIHYRKSQVVPSVANTYSVEIKESAWQRGDEVVANREHVLMALSDITAIYIKATYTTSTKEASLRQVTLDVATPTNLGTPRAVEVEQCRCPEGYLGLSCEQCAPGYARDPEGGIYLGLCRPCECNGHSKYCNSDTGDCEECSDNTEGPSCERCAAGYVGDATRGTIYDCQPDEGYPIPSPPAPGNQTLECTAYCQIEGIYDCRGNECLCKRNVIGDQCDQCRPGTYGLSAQNQDGCKECYCSGLASQCRSAALYRQLIPVDFILNAPLITDESGAVQDTENLIPDISRNMYTYTHTSYLPKYWSLRGSVLGNQLFSYGGRLSYSLIVESYGNYERGHDIVLIGNGLKLIWSRPDGNENQEEYNVRLHEDEQWTRQDRESARPASRSDFMTVLSDLQHILIRATPRVPTQSTSIGNVILESAVTTRTPGATHASDIELCQCPSGYVGTSCESCAPLHYRDASGSCSLCPCDVSNTESCDLVSGGYVECRCKARWKGDRCREIGE" feature key: gene location: complement(70720..75241) num qualifiers: 1 key: /gene= value: "EG:BACR25B3.2" feature key: CDS location: complement(join(70720..70988,71424..71621,72605..72768,72839..73016,73086..73559,75217..75241)) num qualifiers: 6 key: /gene= value: "EG:BACR25B3.2" key: /note= value: "/prediction=(method:''genefinder'', version:''084'', score:''41.82''); /prediction=(method:''genscan'', version:''1.0'')" key: /codon_start= value: 1 key: /protein_id= value: "CAB72287.1" key: /db_xref= value: "GI:6946672" key: /translation= value: "MANSKVVAHDESLQGINDSEWQLMGDDIDDGLLDDVDETLKPMETKSEEEDLPTGNWFSQSVHRVRRSINRLFGSDDNQERGRRQQRERSQRNRDAINRQKELRRRQKEDHNRWKQMRMERQLEKQRLVKRTNHVVFNRATDPRKRASDLYDENEASGYHEEDTTLYRTYFVVNEPYDNEYRDRESVQFQNLQKLLDDDLRNFFHSNYEGNDDEEQEIRSTLERVEPTNDNFKIRVQLRIELPTSVNDFGSKLQQQLNVYNRIENLSAATDGVFSFTESSDIEEEAIDVTLPQEEVEGSGSDDSSCRGDATFTCPRSGKTICDEMRCDREIQCPDGEDEEYCNYPNVCTEDQFKCDDKCLELKKRCDGSIDCLDQTDEAGCINAPEPEPEPEPEPEPEPESEPEAEPEPEPEPEPESEPEQEPEPQVPEANGKFY" feature key: gene location: 121867..127124 num qualifiers: 1 key: /gene= value: "EG:BACR25B3.3" feature key: CDS location: join(121867..122046,122174..122630,123672..123823,124063..124320,124392..124688,124755..125018,125094..125254,125317..125576,126793..127124) num qualifiers: 6 key: /gene= value: "EG:BACR25B3.3" key: /note= value: "/prediction=(method:''genscan'', version:''1.0'', score:''174.91''); /prediction=(method:''genefinder'', version:''084''); /match=(desc:''PROBABLE G PROTEIN-COUPLED RECEPTOR C13B9.4 IN CHROMOSOME III'', species:''Caenorhabditis elegans'', ranges:(query:123671..123775, target:SWISS-PROT::Q09460:107..141, score:''80.00''), (query:123743..123829, target:SWISS-PROT::Q09460:235..263, score:''72.00''), (query:124072..124332, target:SWISS-PROT::Q09460:265..351, score:''161.00''), (query:124392..124691, target:SWISS-PROT::Q09460:349..448, score:''206.00''), (query:124755..124958, target:SWISS-PROT::Q09460:448..515, score:''123.00''), (query:124764..125027, target:SWISS-PROT::Q09460:454..541, score:''108.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''CALCITONIN RECEPTOR PRECURSOR (CT-R)'', species:''Sus scrofa (Pig)'', ranges:(query:124165..124236, target:SWISS-PROT::P25117:191..214, score:''54.00''), (query:124392..124580, target:SWISS-PROT::P25117:233..295, score:''118.00''), (query:124725..124886, target:SWISS-PROT::P25117:318..371, score:''127.00'')), method:''blastx'', version:''1.4.9'')" key: /codon_start= value: 1 key: /protein_id= value: "CAB72288.1" key: /db_xref= value: "GI:6946673" key: /translation= value: "MGAGNRKSETKTKTEAEIEIEMERDQFSIAANACMSMGPMLISKDKAPCSGGRVRHADSLHIYYAVDGKMTLLSNILDCGGCISAQRFTRLLRQSGSSGPSPSAPTAGTFESKSMLEPTSSHSLATGRVPLLHDFDASTTESPGTYVLDGVARVAQLALEPTVMDALPDSDTEQVLGNLNSSAPWNLTLASAAATNFENCSALFVNYTLPQTEFAIRKCELDGRWGSRPNATEVNPPGWTDYGPCYKPEIIRLMQQMGSKDFDAYIDIARRTRTLEIVGLCLSLFALIVSLLIFCTFRSLRNNRTKIHKNLFVAMVLQVIIRLTLYLDQFRRGNKEAATNTSLSVIENTPYLCEASYVLLEYARTAMFMWMFIEGLYLHNMVTVAVFQGSFPLKFFSRLGWCVPILMTTVWARCTVMYMDTSLGECLWNYNLTPYYWILEGPRLAVILLNFCFLVNIIRVLVMKLRQSQASDIEQTRKAVRAAIVLLPLLGITNLLHQLAPLKTATNFAVWSYGTHFLTSFQGFFIALIYCFLNGEVRAVLLKSLATQLSVRGHPEWAPKRASMYSGAYNTAPDTDAVQPAGDPSATGKRISPPNKRLNGRKPSSASIVMIHEPQQRQRLMPRLQNKAREKGKDRVEKTDAEAEPDPTISHIHSKEAGSARSRTRGSKWIMGICFRGQMCDAGLAKDAANIHDVANAADVDACSGSNNNYHNINNNNGSQNNNSIHCNHRDDDKVKGESQSDFKEPSNTNAESLVHLALFTAHTSNTQNNTHRNTIFTPIRRRNCS" feature key: gene location: complement(128489..129414) num qualifiers: 1 key: /gene= value: "EG:BACR25B3.4" feature key: CDS location: complement(join(128489..128715,128777..129140,129196..129313,129374..129414)) num qualifiers: 6 key: /gene= value: "EG:BACR25B3.4" key: /note= value: "/prediction=(method:''genefinder'', version:''084'', score:''61.35''); /prediction=(method:''genscan'', version:''1.0''); /match=(desc:''VACUOLAR PROTON-ATPASE SUBUNIT D'', species:''Oryctolagus cuniculus (Rabbit)'', ranges:(query:129190..129324, target:SPTREMBL::O97755:55..11, score:''130.00''), (query:128778..129176, target:SPTREMBL::O97755:174..42, score:''472.00''), (query:128546..128716, target:SPTREMBL::O97755:231..175, score:''169.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''VACUOLAR ATP SYNTHASE SUBUNIT D (EC 3.6.1.34) (V-ATPASE D SUBUNIT) (V- ATPASE 28 KD ACCESSORY PROTEIN)'', species:''Bos taurus (Bovine)'', ranges:(query:129190..129324, target:SWISS-PROT::P39942:55..11, score:''130.00''), (query:128778..129176, target:SWISS-PROT::P39942:174..42, score:''471.00''), (query:128546..128716, target:SWISS-PROT::P39942:231..175, score:''173.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''GH28048.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH28048 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:129196..129317, target:EMBL::AI517334:233..112, score:''412.00''), (query:128777..129145, target:EMBL::AI517334:597..229, score:''1251.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''GH07112.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH07112 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:129196..129317, target:EMBL::AI108302:223..102, score:''412.00''), (query:128777..129145, target:EMBL::AI108302:587..219, score:''1251.00''), (query:128636..128716, target:EMBL::AI108302:667..587, score:''243.00'')), method:''blastn'', version:''1.4.9'')" key: /codon_start= value: 1 key: /protein_id= value: "CAB72289.1" key: /db_xref= value: "GI:6946674" key: /translation= value: "MAAKDRLPIFPSRGAQTLMKSRLAGATKGHGLLKKKADALQMRFRLILGKIIETKTLMGQVMKEAAFSLAEVKFTTGDINQIVLQNVTKAQIKIRTKKDNVAGVTLPIFEPYTDGVDTYELAGLARGGQQLAKLKKNYQSAVRLLVQLASLQTSFVTLDDVIKVTNRRVNAIEHVIIPRINRTIEYIISELDELEREEFYRLKKIQDKKREARKASDKLRAEQRLLGQMAEAQEVQNILDEDGDEDLLF" feature key: gene location: 132240..132926 num qualifiers: 1 key: /gene= value: "EG:BACR25B3.5" feature key: CDS location: 132240..132926 num qualifiers: 6 key: /gene= value: "EG:BACR25B3.5" key: /note= value: "/prediction=(method:''genefinder'', version:''084'', score:''48.06''); /prediction=(method:''genscan'', version:''1.0'', score:''132.90''); /match=(desc:''N-ACETYLTRANSFERASE'', species:''Drosophila melanogaster (Fruit fly)'', ranges:(query:132249..132326, target:SPTREMBL::Q94521:60..85, score:''64.00''), (query:132600..132842, target:SPTREMBL::Q94521:171..251, score:''105.00'')), method:''blastx'', version:''1.4.9''); EST embl|AI063093|AI063093 comes from the 3' UTR" key: /codon_start= value: 1 key: /protein_id= value: "CAB72290.1" key: /db_xref= value: "GI:6946675" key: /translation= value: "MEYKMIAPEHSEQVMEHLRRNFFADEPLNKAAGLCQNGSSCPALEAHCAEAIQHRMSVMAVDAKEKDTLKIVGVVLNGILKPGDTAKALSKLDCNDDADFRKIFDLLHRHNLKHNLFEHFDVDCMFDVRILSVDSCYRGQGIANELVKRSVAVAKKNGFRLLKADATGIFSQKIFRSHGFEVFSEQPYSKYTDENGKVILPVEAPHIKLQQLYKAICADDQDEKKQSL" feature key: gene location: complement(133492..134407) num qualifiers: 1 key: /gene= value: "EG:BACR25B3.6" feature key: CDS location: complement(join(133492..133595,133663..133748,133867..134135,134198..134407)) num qualifiers: 6 key: /gene= value: "EG:BACR25B3.6" key: /note= value: "/prediction=(method:''genscan'', version:''1.0'', score:''119.22''); /prediction=(method:''genefinder'', version:''084''); /match=(desc:''LD41675.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD41675 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:134192..134531, target:EMBL::AI515958:340..1, score:''1691.00''), (query:133879..134139, target:EMBL::AI515958:591..331, score:''1305.00'')), method:''blastn'', version:''1.4.9'')" key: /codon_start= value: 1 key: /protein_id= value: "CAB72291.1" key: /db_xref= value: "GI:6946676" key: /translation= value: "MNGLPPSKHYNLTHYQQRYNWDCGLSCIIMILSAQQREQLLGNFDAVCGEEGFGSSTWTIDLCYLLMRYQVRHEYFTQTLGIDPNYAQHTYYSKIIDKDERRVTRKFKDARAHGLRVEQRTVDMEVILRHLARHGPVILLTNASLLTCEVCKRNVLEKFGYAGHYVVLCGYDMAAQKLFYHNPEVHDGHICRCLIESMDTARRAYGTDEDIIFIYEKKETRE" feature key: gene location: 135479..136829 num qualifiers: 1 key: /gene= value: "EG:BACR25B3.7" feature key: CDS location: join(135479..135749,135961..136586,136641..136829) num qualifiers: 6 key: /gene= value: "EG:BACR25B3.7" key: /note= value: "/prediction=(method:''genefinder'', version:''084'', score:''66.07''); /prediction=(method:''genscan'', version:''1.0'', score:''145.64''); /match=(desc:''HYPOTHETICAL 40.4 KD TRP-ASP REPEATS CONTAINING PROTEIN C14B1.4 IN CHROMOSOME III'', species:''Caenorhabditis elegans'', ranges:(query:135548..135748, target:SWISS-PROT::Q17963:39..105, score:''120.00''), (query:135957..136586, target:SWISS-PROT::Q17963:105..314, score:''899.00''), (query:136641..136823, target:SWISS-PROT::Q17963:315..375, score:''219.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''LD30385.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD30385 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:135288..135749, target:EMBL::AA950546:102..563, score:''2301.00''), (query:135956..136047, target:EMBL::AA950546:559..650, score:''442.00'')), method:''blastn'', version:''1.4.9''); /match=(desc:''LD10938.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD10938 5prime, mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:136108..136288, target:EMBL::AA392005:776..596, score:''212.00'')), method:''blastn'', version:''1.4.9'')" key: /codon_start= value: 1 key: /protein_id= value: "CAB72292.1" key: /db_xref= value: "GI:6946677" key: /translation= value: "MVPIGAVHGGHPGVVHPPQQPLPTAPSGPNSLQPNSVGQPGATTSSNSSASNKSSLSVKPNYTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPTENIIASAALENDKTIKLWKSDT" feature key: gene location: 145403..147087 num qualifiers: 1 key: /gene= value: "EG:BACR25B3.8" feature key: CDS location: join(145403..146203,146515..147087) num qualifiers: 5 key: /gene= value: "EG:BACR25B3.8" key: /codon_start= value: 1 key: /protein_id= value: "CAB72293.1" key: /db_xref= value: "GI:6946678" key: /translation= value: "MNSTTKHLLHCTLLITVIVTFEVFSGGIKIDENSFTLVDPWTEYGQLATVLLYLLRFLTLLTLPQVLFNFCGLVFYNAFPEKVVLKGSPLLAPFICIRVVTRGDFPDLVKTNVLRNMNTCLDTGLENFLIEVVTDKAVNLSQHRRIREIVVPKEYKTRTGALFKSRALQYCLEDNVNVLNDSDWIVHLDEETLLTENSVRGIINFVLDGKHPFGQGLITYANENVVNWLTTLADSFRVSDDMGKLRLQFKLFHKPLFSWKGSYVVTQVSAERSVSFDNGIDGSVAEDCFFAMRAFSQGYTFNFIEGEMYEKSPFTLLDFLQQRKRWLQGILLVVHSKMIPFKHKLLLGISVYSWVTMPLSTSNIIFAALYPIPCPNLVDFVCAFIAAINIYMYVFGVIKSFSLYRFGLFRFLACVLGAVCTIPVNVVIENVAVIWGLVGKKHKFYVVQKDVRVLETV" feature key: gene location: complement(148860..152785) num qualifiers: 1 key: /gene= value: "EG:BACR25B3.9" feature key: CDS location: complement(join(148860..148905,148966..149462,149546..151809,151881..152032,152106..152785)) num qualifiers: 6 key: /gene= value: "EG:BACR25B3.9" key: /note= value: "/prediction=(method:''genscan'', version:''1.0''); /prediction=(method:''genefinder'', version:''084''); /match=(desc:''HYPOTHETICAL 135.8 KD PROTEIN'', species:''Drosophila melanogaster (Fruit fly)'', ranges:(query:152096..152785, target:SPTREMBL::Q9XZ29:230..1, score:''1147.00''), (query:151882..152043, target:SPTREMBL::Q9XZ29:277..224, score:''250.00''), (query:149546..151816, target:SPTREMBL::Q9XZ29:1032..276, score:''3735.00''), (query:148953..149465, target:SPTREMBL::Q9XZ29:1202..1032, score:''890.00''), (query:148863..148907, target:SPTREMBL::Q9XZ29:1212..1198, score:''76.00'')), method:''blastx'', version:''1.4.9''); /match=(desc:''LD21815.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD21815 5prime similar to L19117: Drosophila melanogaster (chromosome X 3A6-8) kinesin-like protein of 3A (klp3A) mRNA sequence'', species:''Drosophila melanogaster (fruit fly)'', ranges:(query:152482..152787, target:EMBL::AA816942:460..155, score:''1485.00''), (query:152401..152483, target:EMBL::AA816942:540..458, score:''397.00'')), method:''blastn'', version:''1.4.9'')" key: /codon_start= value: 1 key: /protein_id= value: "CAB72294.1" key: /db_xref= value: "GI:6946679" key: /translation= value: "MSSEDPSCVAVALRVRPLVQSELDRGCRIAVERSADGAPQVTVNRNESYTYNYVFDIDDSQKDLFETCVQAKVKKLLNGYNVTILAYGQTGSGKTYTMGTAFNGVLDDHVGVIPRAVHDIFTAIAEMQSEFRFAVTCSFVELYQEQFYDLFSSKTRDKATVDIREVKNRIIMPGLTELVVTSAQQVTDHLIRGSAGRAVAATAMNETSSRSHAIFTLTLVATKLDGKQSVTTSRFNLVDLAGSERCSKTLASGDRFKEGVNINKGLLALGNVINALGSGQAAGYIPYRQSKLTRLLQDSLGGNSITLMIACVSPADYNVAETLSTLRYADRALQIKNKPVVNLDPHAAEVNMLKDVIQKLRVELLSGGKMSSSLISAVGAAGLGAIPCEESLAGSMANAAEIQRLKEQVRTLQDRNRKLQQELHQSLLDLTEKEMRAHIAEQAHDKLRSHVSELKNKLDQREQAQFGNENTNGDNEMRDFSLLVNRVHVELQRTQEELESQGHESRQRLSSRSHTEGGESGGDEVHEMLHSHSEEYTNKQMNFAGELRNINRQLDLKQELHERIMRNFSRLDSDDEDVKLRLCNQKIDDLEAERRDLMDQLRNIKSKDISAKLAEERRKRLQLLEQEISDLRRKLITQANLLKIRDKEREKIQNLSTEIRTMKESKVKLIRAMRGESEKFRQWKMVREKELTQLKSKDRKMQSEIVRQQTLHSKQRQVLKRKCEEALAANKRLKDALERQASAQAQRHKYKDNGGSAAGSSNANAKTDSWVDRELEIILSLIDAEHSLEQLMEDRAVINNHYHLLQQEKTSDPAEAAEQARILASLEEELEMRNAQISDLQQKVCPTDLDSRIRSLAEGVQSLGESRTVSKQLLKTLVQQRRLQASSLNEQRTTLDELRAQLLDAQQQEDAASKRLRLLQSQHEEQMLAQQRAYEEKVSVLIRTANQRWAEARSPAEDQQRNQILEELLSSREALQQELDKLRAKNKSKSKAVKSEPQDLDDSFQIVDGNETVVLSDVSDDPDWVPSTSKSKRIQSDSRNVISPPEKQDANVTSLGNSSIQSLNSTSATEDGKRCKGCKCRTKCTTKRCGCLSGNNACSETCVCKSNCRNPLNLKDHASQCGDGDGQKDETEDADKSDDDGDDEPQTSKENAVKFVTPEAPGKVVASPKQTLQEPKAAATPLMNSNVVEDINGPKLAKMSGLAFDTPKRKFF" feature key: gene location: join(153490..154269,AL121804.2:41..610,AL121804.2:672..1487) num qualifiers: 1 key: /gene= value: "EG:BACR7C10.3" feature key: CDS location: join(153490..154269,AL121804.2:41..610,AL121804.2:672..1487) num qualifiers: 5 key: /gene= value: "EG:BACR7C10.3" key: /codon_start= value: 1 key: /protein_id= value: "CAB72295.1" key: /db_xref= value: "GI:6946680" key: /translation= value: "MEEEAPRFNVLEEAFNGNGNGCANVEATQSAILKVLTRVNRFQMRVRKHIEDNYTEFLPNNTSPDIFLEESGSLNREIHDMLENLGSEGLDALDEANVKMAGNGRQLREILLGLGVSEHVLRIDELFQCVEEAKATKDYLVLLDLVGRLRAFIYGDDSVDGDAQVATPEVRRIFKALECYETIKVKYHVQAYMLQQSLQERFDRLVQLQCKSFPTSRCVTLQVSRDQTQLQDIVQALFQEPYNPARLAEFLLDNCIEPVIMRPVMADYSEEADGGTYVRLSLSYATKEPSSAHVRPNYKQVLENLRLLLHTLAGINCSVSRDQHVFGIIGDHVKDKMLKLLVDECLIPAVPESTEEYQTSTLCEDVAQLEQLLVDSFIINPEQDRALGQFVEKYETYYRNRMYRRVLETAREIIQRDLQDMVLVAPNNHSAEVANDPFLFPRCMISKSAQDFVKLMDRILRQPTDKLGDQEADPIAGVISIMLHTYINEVPKVHRKLLESIPQQAVLFHNNCMFFTHWVAQHANKGIESLAALAKTLQATGQQHFRVQVDYQSSILMGIMQEFEFESTHTLGSGPLKLVRQCLRQLELLKNVWANVLPETVYNATFCELINTFVAELIRRVFTLRHISAQMACELSDLIDVVLQRAPTLFREPNEVVQVLSWLKLQQLKAMLNASLMEITELWGDGVGPLTASYKSDEIKHLIRALFQDTDWRAKAITQIV" ***Record from one_of.gb with the RecordParser sequence length: 2509 locus: HSTMPO1 definition: Human thymopoietin (TMPO) gene, exon 1. accession: ['U18266'] reference title: Structure and mapping of the human thymopoietin (TMPO) gene and relationship of TMPO beta to rat lamin-associated polypeptide 2 reference title: Direct Submission feature key: source location: 1..2509 num qualifiers: 6 key: /organism= value: "Homo sapiens" key: /db_xref= value: "taxon:9606" key: /chromosome= value: "12" key: /map= value: "12q22; 64% (% distance from centromere to telomere)" key: /clone= value: "P1.516 (DMPC-HFFno.1B-0943F)" key: /clone_lib= value: "DuPont Merck Hum Fibroblast P1 Library no.1 Series B (compressed) (Genome Systems Inc)" feature key: 5'UTR location: one-of(1888,1901)..2200 num qualifiers: 1 key: /gene= value: "TMPO" feature key: gene location: join(1888..2509,U18267.1:1..270,U18268.1:1..309,U18270.1:1..6905,U18269.1:1..128,U18271.1:1..3234) num qualifiers: 1 key: /gene= value: "TMPO" feature key: exon location: one-of(1888,1901)..2479 num qualifiers: 2 key: /gene= value: "TMPO" key: /number= value: 1 feature key: CDS location: join(2201..2479,U18267.1:120..246,U18268.1:130..288,U18270.1:4691..4788,U18269.1:82..>128) num qualifiers: 6 key: /gene= value: "TMPO" key: /codon_start= value: 1 key: /product= value: "thymopoietin beta" key: /protein_id= value: "AAB60434.1" key: /db_xref= value: "GI:885684" key: /translation= value: "MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQSYSQAGITETEWTSGS" feature key: CDS location: join(2201..2479,U18267.1:120..246,U18268.1:130..288,U18270.1:39..1558) num qualifiers: 6 key: /gene= value: "TMPO" key: /codon_start= value: 1 key: /product= value: "thymopoietin alpha" key: /protein_id= value: "AAB60433.1" key: /db_xref= value: "GI:885683" key: /translation= value: "MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEGKKKEHKKVKSTRDIVPFSELGTTPSGGGFFQGISFPEISTRPPLGSTELQAAKKVHTSKGDLPREPLVATNLPGRGQLQKLASERNLFISCKSSHDRCLEKSSSSSSQPEHSAMLVSTAASPSLIKETTTGYYKDIVENICGREKSGIQPLCPERSHISDQSPLSSKRKALEESESSQLISPPLAQAIRDYVNSLLVQGGVGSLPGTSNSMPPLDVENIQKRIDQSKFQETEFLSPPRKVPRLSEKSVEERDSGSFVAFQNIPGSELMSSFAKTVVSHSLTTLGLEVAKQSQHDKIDASELSFPFHESILKVIEEEWQQVDRQLPSLACKYPVSSREATQILSVPKVDDEILGFISEATPLGGIQAASTESCNQQLDLALCRAYEAAASALQIATHTAFVAKAMQADISEAAQILSSDPSRTHQALGILSKTYDAASYICEAAFDEVKMAAHTMGNATVGRRYLWLKDCKINLASKNKLASTPFKGGTLFGGEVCKVIKKRGNKH" ***Record from NT_019265.gb with the RecordParser sequence length: 0 locus: NT_019265 definition: Homo sapiens chromosome 1 working draft sequence segment. accession: ['NT_019265'] reference title: Direct Submission feature key: source location: 1..1250660 num qualifiers: 3 key: /organism= value: "Homo sapiens" key: /db_xref= value: "taxon:9606" key: /chromosome= value: "1" feature key: source location: 1..3290 num qualifiers: 4 key: /note= value: "Accession AL391218 sequenced by The Sanger Centre" key: /organism= value: "Homo sapiens" key: /db_xref= value: "taxon:9606" key: /clone= value: "RP11-13G5" feature key: misc_feature location: 215902..365470 num qualifiers: 2 key: /standard_name= value: "RP11-242F24" key: /note= value: "FISH-mapped clone" feature key: variation location: 217508 num qualifiers: 3 key: /allele= value: "T" key: /allele= value: "C" key: /db_xref= value: "dbSNP:811400" feature key: mRNA location: join(342430..342515,363171..363300,365741..365814,376398..376499,390169..390297,391257..391379,392606..392679,398230..398419,399082..399167,399534..399650,405844..405913,406704..406761,406868..407010,407962..408091,408508..409092) num qualifiers: 4 key: /gene= value: "FLJ10737" key: /product= value: "hypothetical protein FLJ10737" key: /transcript_id= value: "XM_057697.1" key: /db_xref= value: "LocusID:55735" ***Record from origin_line.gb with the RecordParser sequence length: 180 locus: NC_002678 definition: Mesorhizobium loti, complete genome (edited). accession: ['NC_002678'] reference title: Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti reference title: Direct Submission feature key: source location: 1..180 num qualifiers: 3 key: /organism= value: "Mesorhizobium loti" key: /strain= value: "MAFF303099" key: /db_xref= value: "taxon:381" feature key: gene location: 20..120 num qualifiers: 1 key: /gene= value: "fake" ***Record from blank_seq.gb with the RecordParser sequence length: 360 locus: NP_001832 definition: cannabinoid receptor 2 (macrophage) [Homo sapiens]. accession: ['NP_001832'] reference title: Molecular characterization of a peripheral receptor for cannabinoids reference title: Expression of central and peripheral cannabinoid receptors in human immune tissues and leukocyte subpopulations reference title: Molecular cloning, expression and function of the murine CB2 peripheral cannabinoid receptor feature key: source location: 1..360 num qualifiers: 4 key: /organism= value: "Homo sapiens" key: /db_xref= value: "taxon:9606" key: /chromosome= value: "1" key: /map= value: "1p36.11" feature key: Protein location: 1..360 num qualifiers: 1 key: /product= value: "cannabinoid receptor 2 (macrophage)" feature key: Region location: 50..299 num qualifiers: 3 key: /region_name= value: "7 transmembrane receptor (rhodopsin family)" key: /db_xref= value: "CDD:pfam00001" key: /note= value: "7tm_1" feature key: CDS location: 1..360 num qualifiers: 5 key: /pseudo value: key: /gene= value: "CNR2" key: /db_xref= value: "LocusID:1269" key: /db_xref= value: "MIM:605051" key: /coded_by= value: "NM_001841.1:127..1209" ***Record from dbsource_wrap.gb with the RecordParser sequence length: 64 locus: SCX3_BUTOC definition: Neurotoxin III. accession: ['P01485'] reference title: Neurotoxins from the venoms of two scorpions: Buthus occitanus tunetanus and Buthus occitanus mardochei feature key: source location: 1..64 num qualifiers: 2 key: /organism= value: "Buthus occitanus tunetanus" key: /db_xref= value: "taxon:6871" feature key: Protein location: 1..64 num qualifiers: 1 key: /product= value: "Neurotoxin III" feature key: Bond location: bond(12,63) num qualifiers: 2 key: /bond_type= value: "disulfide" key: /note= value: "BY SIMILARITY." feature key: Bond location: bond(16,36) num qualifiers: 2 key: /bond_type= value: "disulfide" key: /note= value: "BY SIMILARITY." feature key: Bond location: bond(22,46) num qualifiers: 2 key: /bond_type= value: "disulfide" key: /note= value: "BY SIMILARITY." feature key: Bond location: bond(26,48) num qualifiers: 2 key: /bond_type= value: "disulfide" key: /note= value: "BY SIMILARITY." feature key: Site location: 64 num qualifiers: 1 key: /site_type= value: "amidation" ***Record from gbvrl1_start.seq with the RecordParser sequence length: 2007 locus: AB000048 definition: Feline panleukopenia virus DNA for nonstructural protein 1, complete cds. accession: ['AB000048'] reference title: Evolutionary pattern of feline panleukopenia virus differs from that of canine parvovirus reference title: Direct Submission feature key: source location: 1..2007 num qualifiers: 5 key: /organism= value: "Feline panleukopenia virus" key: /mol_type= value: "genomic DNA" key: /isolate= value: "483" key: /db_xref= value: "taxon:10786" key: /lab_host= value: "Felis domesticus" feature key: CDS location: 1..2007 num qualifiers: 5 key: /codon_start= value: 1 key: /product= value: "nonstructural protein 1" key: /protein_id= value: "BAA19009.1" key: /db_xref= value: "GI:1769754" key: /translation= value: "MSGNQYTEEVMEGVNWLKKHAEDEAFSFVFKCDNVQLNGKDVRWNNYTKPIQNEELTSLIRGAQTAMDQTEEEEMDWESEVDSLAKKQVQTFDALIKKCLFEVFVSKNIEPNECVWFIQHEWGKDQGWHCHVLLHSKNLQQATGKWLRRQMNMYWSRWLVTLCSINLTPTEKIKLREIAEDSEWVTILTYRHKQTKKDYVKMVHFGNMIAYYFLTKKKIVHMTKESGYFLSTDSGWKFNFMKYQDRHTVSTLYTEQMKPETVETTVTTAQETKRGRIQTKKEVSIKCTLRDLVSKRVTSPEDWMMLQPDSYIEMMAQPGGENLLKNTLEICTLTLARTKTAFELILEKADNTKLTNFDLANSRTCQIFRMHGWNWIKVCHAIACVLNRQGGKRNTVLFHGPASTGKSIIAQAIAQAVGNVGCYNAANVNFPFNDCTNKNLIWVEEAGNFGQQVNQFKAICSGQTIRIDQKGKGSKQIEPTPVIMTTNENITIVRIGCEERPEHTQPIRDRMLNIKLVCKLPGDFGLVDKEEWPLICAWLVKHGYQSTMANYTHHWGKVPEWDENWAEPKIQEGINSPGCKDLETQAASNPQSQDHVLTPLTPDVVDLALEPWSTPDTPIAETANQQSNQLGVTHKDVQASPTWSEIEADLRAIFTSEQLEEDFRDDLD" ***Record from gbvrl1_start.seq with the RecordParser sequence length: 2007 locus: AB000049 definition: Feline panleukopenia virus DNA for nonstructural protein 1, complete cds. accession: ['AB000049'] reference title: Evolutionary pattern of feline panleukopenia virus differs that of canine parvovirus reference title: Direct Submission feature key: source location: 1..2007 num qualifiers: 5 key: /organism= value: "Feline panleukopenia virus" key: /mol_type= value: "genomic DNA" key: /isolate= value: "94-1" key: /db_xref= value: "taxon:10786" key: /lab_host= value: "Felis domesticus" feature key: CDS location: 1..2007 num qualifiers: 5 key: /codon_start= value: 1 key: /product= value: "nonstructural protein 1" key: /protein_id= value: "BAA19010.1" key: /db_xref= value: "GI:1769756" key: /translation= value: "MSGNQYTEEVMEGVNWLKKHAEDEAFSFVFKCDNVQLNGKDVRWNNYTKPIQNEELTSLIRGAQTAMDQTEEEEMDWESEVDSLAKKQVQTFDALIKKCLFEVFVSKNIEPNECVWFIQHEWGKDQGWHCHVLLHSKNLQQATGKWLRRQMNMYWSRWLVTLCSINLTPTEKIKLREIAEDSEWVTILTYRHKQTKKDYVKMVHFGNMIAYYFLTKKKIVHMTKESGYFLSTDSGWKFNFMKYQDRHTVSTLYTEQMKPETVETTVTTAQETKRGRIQTKKEVSIKCTLRDLVSKRVTSPEDWMMLQPDSYIEMMAQPGGENLLKNTLEICTLTLARTKTAFELILEKADNTKLTNFDLANSRTCQIFRMHGWNWIKVCHAIACVLNRQGGKRNTVLFHGPASTGKSIIAQAIAQAVGNVGCYNAANVNFPFNDCTNKNLIWVEEAGNFGQQVNQFKAICSGQTIRIDQKGKGSKQIEPTPVIMTTNENITIVRIGCEERPEHTQPIRDRMLNIKLVCKLPGDFGLVDKEEWPLICAWLVKHGYQSTMANYTHHWGKVPEWDENWAEPKIQEGINSPGCKDLETQAASNPQSQDHVLTPLTPDVVDLALEPWSTPDTPIAETANQQSNQLGVTHKDVQASPTWSEIEADLRAIFTSEQLEEDFRDDLD" ***Record from gbvrl1_start.seq with the RecordParser sequence length: 1755 locus: AB000050 definition: Feline panleukopenia virus DNA for capsid protein 2, complete cds. accession: ['AB000050'] reference title: Evolutionary pattern of feline panleukopenia virus differs from that of canine parvovirus reference title: Direct Submission feature key: source location: 1..1755 num qualifiers: 5 key: /organism= value: "Feline panleukopenia virus" key: /mol_type= value: "genomic DNA" key: /isolate= value: "94-1" key: /db_xref= value: "taxon:10786" key: /lab_host= value: "Felis domesticus" feature key: CDS location: 1..1755 num qualifiers: 5 key: /codon_start= value: 1 key: /product= value: "capsid protein 2" key: /protein_id= value: "BAA19011.1" key: /db_xref= value: "GI:1769758" key: /translation= value: "MSDGAVQPDGGQPAVRNERATGSGNGSGGGGGGGSGGVGISTGTFNNQTEFKFLENGWVEITANSSRLVHLNMPESENYKRVVVNNMDKTAVKGNMALDDTHVQIVTPWSLVDANAWGVWFNPGDWQLIVNTMSELHLVSFEQEIFNVVLKTVSESATQPPTKVYNNDLTASLMVALDSNNTMPFTPAAMRSETLGFYPWKPTIPTPWRYYFQWDRTLIPSHTGTSGTPTNVYHGTDPDDVQFYTIENSVPVHLLRTGDEFATGTFFFDCKPCRLTHTWQTNRALGLPPFLNSLPQSEGATNFGDIGVQQDKRRGVTQMGNTDYITEATIMRPAEVGYSAPYYSFEASTQGPFKTPIAAGRGGAQTDENQAADGDPRYAFGRQHGQKTTTTGETPERFTYIAHQDTGRYPEGDWIQNINFNLPVTNDNVLLPTDPIGGKTGINYTNIFNTYGPLTALNNVPPVYPNGQIWDKEFDTDLKPRLHVNAPFVCQNNCPGQLFVKVAPNLTNEYDPDASANMSRIVTYSDFWWKGKLVFKAKLRASHTWNPIQQMSINVDNQFNYVPNNIGAMKIVYEKSQLAPRKLY" ***Record from NC_005816.gb with the RecordParser sequence length: 9609 locus: NC_005816 definition: Yersinia pestis biovar Microtus str. 91001 plasmid pPCP1, complete sequence. accession: ['NC_005816'] reference title: Genetics of metabolic variations between Yersinia pestis biovars and the proposal of a new biovar, microtus reference title: Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans reference title: Direct Submission reference title: Direct Submission feature key: source location: 1..9609 num qualifiers: 6 key: /organism= value: "Yersinia pestis biovar Microtus str. 91001" key: /mol_type= value: "genomic DNA" key: /strain= value: "91001" key: /db_xref= value: "taxon:229193" key: /plasmid= value: "pPCP1" key: /biovar= value: "Microtus" feature key: repeat_region location: 1..1954 num qualifiers: 0 feature key: gene location: 87..1109 num qualifiers: 2 key: /locus_tag= value: "YP_pPCP01" key: /db_xref= value: "GeneID:2767718" feature key: CDS location: 87..1109 num qualifiers: 9 key: /locus_tag= value: "YP_pPCP01" key: /note= value: "similar to corresponding CDS from previously sequenced pPCP plasmid of Yersinia pestis KIM (AF053945) and CO92 (AL109969), also many transposase entries for insertion sequence IS100 of Yersinia pestis. Contains IS21-like element transposase, HTH domain (Interpro|IPR007101)" key: /codon_start= value: 1 key: /transl_table= value: 11 key: /product= value: "putative transposase" key: /protein_id= value: "NP_995567.1" key: /db_xref= value: "GI:45478712" key: /db_xref= value: "GeneID:2767718" key: /translation= value: "MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVA" feature key: misc_feature location: 87..959 num qualifiers: 3 key: /locus_tag= value: "YP_pPCP01" key: /note= value: "Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584" key: /db_xref= value: "CDD:34222" feature key: misc_feature location: <111..209 num qualifiers: 3 key: /locus_tag= value: "YP_pPCP01" key: /note= value: "Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cl01116" key: /db_xref= value: "CDD:186341" feature key: misc_feature location: 438..812 num qualifiers: 3 key: /locus_tag= value: "YP_pPCP01" key: /note= value: "Integrase core domain; Region: rve; cl01316" key: /db_xref= value: "CDD:194099" feature key: gene location: 1106..1888 num qualifiers: 2 key: /locus_tag= value: "YP_pPCP02" key: /db_xref= value: "GeneID:2767716" feature key: CDS location: 1106..1888 num qualifiers: 9 key: /locus_tag= value: "YP_pPCP02" key: /note= value: "similar to corresponding CDS form previously sequenced pPCP plasmid of Yersinia pestis KIM (AF053945) and CO92 (AL109969), also many ATP-binding protein entries for insertion sequence IS100 of Yersinia pestis. Contains Chaperonin clpA/B (Interpro|IPR001270). Contains ATP/GTP-binding site motif A (P-loop) (Interpro|IPR001687, Molecular Function: ATP binding (GO:0005524)). Contains Bacterial chromosomal replication initiator protein, DnaA (Interpro|IPR001957, Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA replication origin binding (GO:0003688), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication initiation (GO:0006270), Biological Process: regulation of DNA replication (GO:0006275)). Contains AAA ATPase (Interpro|IPR003593, Molecular Function: nucleotide binding (GO:0000166))" key: /codon_start= value: 1 key: /transl_table= value: 11 key: /product= value: "transposase/IS protein" key: /protein_id= value: "NP_995568.1" key: /db_xref= value: "GI:45478713" key: /db_xref= value: "GeneID:2767716" key: /translation= value: "MMMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE" feature key: misc_feature location: 1109..1885 num qualifiers: 3 key: /locus_tag= value: "YP_pPCP02" key: /note= value: "transposase/IS protein; Provisional; Region: PRK09183" key: /db_xref= value: "CDD:181681" feature key: misc_feature location: 1367..>1669 num qualifiers: 3 key: /locus_tag= value: "YP_pPCP02" key: /note= value: "The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes...; Region: AAA; cd00009" key: /db_xref= value: "CDD:99707" feature key: misc_feature location: 1433..1456 num qualifiers: 3 key: /locus_tag= value: "YP_pPCP02" key: /note= value: "Walker A motif; other site" key: /db_xref= value: "CDD:99707" feature key: misc_feature location: order(1436..1459,1619..1621) num qualifiers: 3 key: /locus_tag= value: "YP_pPCP02" key: /note= value: "ATP binding site [chemical binding]; other site" key: /db_xref= value: "CDD:99707" feature key: misc_feature location: 1607..1624 num qualifiers: 3 key: /locus_tag= value: "YP_pPCP02" key: /note= value: "Walker B motif; other site" key: /db_xref= value: "CDD:99707" feature key: gene location: 2925..3119 num qualifiers: 4 key: /gene= value: "rop" key: /locus_tag= value: "YP_pPCP03" key: /gene_synonym= value: "rom" key: /db_xref= value: "GeneID:2767717" feature key: CDS location: 2925..3119 num qualifiers: 11 key: /gene= value: "rop" key: /locus_tag= value: "YP_pPCP03" key: /gene_synonym= value: "rom" key: /note= value: "Best Blastp hit =gi|16082682|ref|NP_395229.1| (NC_003132) putative replication regulatory protein [Yersinia pestis], gi|5763813|emb|CAB531 66.1| (AL109969) putative replication regulatory protein [Yersinia pestis]; similar to gb|AAK91579.1| (AY048853), RNAI modulator protein Rom [Salmonella choleraesuis], Contains Regulatory protein Rop (Interpro|IPR000769)" key: /codon_start= value: 1 key: /transl_table= value: 11 key: /product= value: "putative replication regulatory protein" key: /protein_id= value: "NP_995569.1" key: /db_xref= value: "GI:45478714" key: /db_xref= value: "GeneID:2767717" key: /translation= value: "MNKQQQTALNMARFIRSQSLILLEKLDALDADEQAAMCERLHELAEELQNSIQARFEAESETGT" feature key: misc_feature location: 2925..3107 num qualifiers: 5 key: /gene= value: "rop" key: /locus_tag= value: "YP_pPCP03" key: /gene_synonym= value: "rom" key: /note= value: "Rop protein; Region: Rop; pfam01815" key: /db_xref= value: "CDD:145136" feature key: gene location: 3486..3857 num qualifiers: 2 key: /locus_tag= value: "YP_pPCP04" key: /db_xref= value: "GeneID:2767720" feature key: CDS location: 3486..3857 num qualifiers: 9 key: /locus_tag= value: "YP_pPCP04" key: /note= value: "Best Blastp hit = gi|321919|pir||JQ1541 hypothetical 16.9K protein - Salmonella typhi murium plasmid NTP16." key: /codon_start= value: 1 key: /transl_table= value: 11 key: /product= value: "hypothetical protein" key: /protein_id= value: "NP_995570.1" key: /db_xref= value: "GI:45478715" key: /db_xref= value: "GeneID:2767720" key: /translation= value: "MSKKRRPQKRPRRRRFFHRLRPPDEHHKNRRSSQRWRNPTGLKDTRRFPPEAPSCALLFRPCRLPDTSPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTTAPYPVTIVLSPTR" feature key: misc_feature location: 3498..3626 num qualifiers: 2 key: /locus_tag= value: "YP_pPCP04" key: /note= value: "ProfileScan match to entry PS50323 ARG_RICH, E-value 8.981" feature key: gene location: 4343..4780 num qualifiers: 3 key: /gene= value: "pim" key: /locus_tag= value: "YP_pPCP05" key: /db_xref= value: "GeneID:2767712" feature key: CDS location: 4343..4780 num qualifiers: 10 key: /gene= value: "pim" key: /locus_tag= value: "YP_pPCP05" key: /note= value: "similar to many previously sequenced pesticin immunity protein entries of Yersinia pestis plasmid pPCP, e.g. gi| 16082683|,ref|NP_395230.1| (NC_003132) , gi|1200166|emb|CAA90861.1| (Z54145 ) , gi|1488655| emb|CAA63439.1| (X92856) , gi|2996219|gb|AAC62543.1| (AF053945) , and gi|5763814|emb|CAB531 67.1| (AL109969)" key: /codon_start= value: 1 key: /transl_table= value: 11 key: /product= value: "pesticin immunity protein" key: /protein_id= value: "NP_995571.1" key: /db_xref= value: "GI:45478716" key: /db_xref= value: "GeneID:2767712" key: /translation= value: "MGGGMISKLFCLALIFLSSSGLAEKNTYTAKDILQNLELNTFGNSLSHGIYGKQTTFKQTEFTNIKSNTKKHIALINKDNSWMISLKILGIKRDEYTVCFEDFSLIRPPTYVAIHPLLIKKVKSGNFIVVKEIKKSIPGCTVYYH" feature key: gene location: complement(4815..5888) num qualifiers: 3 key: /gene= value: "pst" key: /locus_tag= value: "YP_pPCP06" key: /db_xref= value: "GeneID:2767721" feature key: CDS location: complement(4815..5888) num qualifiers: 10 key: /gene= value: "pst" key: /locus_tag= value: "YP_pPCP06" key: /note= value: "Best Blastp hit =|16082684|ref|NP_395231.1| (NC_003132) pesticin [Yersinia pestis], gi|984824|gb|AAA75369.1| (U31974) pesticin [Yersinia pestis], gi|1488654|emb|CAA63438.1| (X92856) pesticin [Yersinia pestis], gi|2996220|gb|AAC62544.1| (AF053945) pesticin [Yersinia pestis], gi|5763815|emb|CAB53168.1| (AL1099 69) pesticin [Yersinia pestis]" key: /codon_start= value: 1 key: /transl_table= value: 11 key: /product= value: "pesticin" key: /protein_id= value: "NP_995572.1" key: /db_xref= value: "GI:45478717" key: /db_xref= value: "GeneID:2767721" key: /translation= value: "MSDTMVVNGSGGVPAFLFSGSTLSSYRPNFEANSITIALPHYVDLPGRSNFKLMYIMGFPIDTEMEKDSEYSNKIRQESKISKTEGTVSYEQKITVETGQEKDGVKVYRVMVLEGTIAESIEHLDKKENEDILNNNRNRIVLADNTVINFDNISQLKEFLRRSVNIVDHDIFSSNGFEGFNPTSHFPSNPSSDYFNSTGVTFGSGVDLGQRSKQDLLNDGVPQYIADRLDGYYMLRGKEAYDKVRTAPLTLSDNEAHLLSNIYIDKFSHKIEGLFNDANIGLRFSDLPLRTRTALVSIGYQKGFKLSRTAPTVWNKVIAKDWNGLVNAFNNIVDGMSDRRKREGALVQKDIDSGLLK" feature key: variation location: 5910..5911 num qualifiers: 2 key: /note= value: "compared to AF053945" key: /replace= value: "" feature key: variation location: 5933^5934 num qualifiers: 2 key: /note= value: "compared to AL109969" key: /replace= value: "a" feature key: variation location: 5933^5934 num qualifiers: 2 key: /note= value: "compared to AF053945" key: /replace= value: "aa" feature key: variation location: 5948 num qualifiers: 2 key: /note= value: "compared to AL109969" key: /replace= value: "c" feature key: gene location: 6005..6421 num qualifiers: 2 key: /locus_tag= value: "YP_pPCP07" key: /db_xref= value: "GeneID:2767719" feature key: CDS location: 6005..6421 num qualifiers: 9 key: /locus_tag= value: "YP_pPCP07" key: /note= value: "Best Blastp hit = gi|16082685|ref|NP_395232.1| (NC_003132) hypothetical protein [Yersinia pestis], gi|5763816|emb|CAB53169.1| (AL109969) hypothetical protein [Yersinia pestis]" key: /codon_start= value: 1 key: /transl_table= value: 11 key: /product= value: "hypothetical protein" key: /protein_id= value: "NP_995573.1" key: /db_xref= value: "GI:45478718" key: /db_xref= value: "GeneID:2767719" key: /translation= value: "MKFHFCDLNHSYKNQEGKIRSRKTAPGNIRKKQKGDNVSKTKSGRHRLSKTDKRLLAALVVAGYEERTARDLIQKHVYTLTQADLRHLVSEISNGVGQSQAYDAIYQARRIRLARKYLSGKKPEGVEPREGQEREDLP" feature key: variation location: 6525 num qualifiers: 2 key: /note= value: "compared to AF053945 and AL109969" key: /replace= value: "c" feature key: gene location: 6664..7602 num qualifiers: 3 key: /gene= value: "pla" key: /locus_tag= value: "YP_pPCP08" key: /db_xref= value: "GeneID:2767715" feature key: CDS location: 6664..7602 num qualifiers: 11 key: /gene= value: "pla" key: /locus_tag= value: "YP_pPCP08" key: /EC_number= value: "3.4.23.48" key: /note= value: "outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves the autotransporter IcsA" key: /codon_start= value: 1 key: /transl_table= value: 11 key: /product= value: "outer membrane protease" key: /protein_id= value: "NP_995574.1" key: /db_xref= value: "GI:45478719" key: /db_xref= value: "GeneID:2767715" key: /translation= value: "MKKSSIVATIITILSGSANAASSQLIPNISPDSFTVAASTGMLSGKSHEMLYDAETGRKISQLDWKIKNVAILKGDISWDPYSFLTLNARGWTSLASGSGNMDDYDWMNENQSEWTDHSSHPATNVNHANEYDLNVKGWLLQDENYKAGITAGYQETRFSWTATGGSYSYNNGAYTGNFPKGVRVIGYNQRFSMPYIGLAGQYRINDFELNALFKFSDWVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSKYDEGKGGTQIIDKNSGDSVSIGGDAAGISNKNYTVTAGLQYRF" feature key: misc_feature location: 6664..7599 num qualifiers: 4 key: /gene= value: "pla" key: /locus_tag= value: "YP_pPCP08" key: /note= value: "Omptin family; Region: Omptin; cl01886" key: /db_xref= value: "CDD:186487" feature key: gene location: complement(7789..8088) num qualifiers: 2 key: /locus_tag= value: "YP_pPCP09" key: /db_xref= value: "GeneID:2767713" feature key: CDS location: complement(7789..8088) num qualifiers: 9 key: /locus_tag= value: "YP_pPCP09" key: /note= value: "Best Blastp hit = gi|16082687|ref|NP_395234.1| (NC_003132) putative transcriptional regulator [Yersinia pestis], gi|5763818|emb|CAB53171.1| (AL109969) putative transcriptional regulator [Yersinia pestis]." key: /codon_start= value: 1 key: /transl_table= value: 11 key: /product= value: "putative transcriptional regulator" key: /protein_id= value: "NP_995575.1" key: /db_xref= value: "GI:45478720" key: /db_xref= value: "GeneID:2767713" key: /translation= value: "MRTLDEVIASRSPESQTRIKEMADEMILEVGLQMMREELQLSQKQVAEAMGISQPAVTKLEQRGNDLKLATLKRYVEAMGGKLSLDVELPTGRRVAFHV" feature key: misc_feature location: complement(7837..7995) num qualifiers: 3 key: /locus_tag= value: "YP_pPCP09" key: /note= value: "Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl09100" key: /db_xref= value: "CDD:195788" feature key: gene location: complement(8088..8360) num qualifiers: 2 key: /locus_tag= value: "YP_pPCP10" key: /db_xref= value: "GeneID:2767714" feature key: CDS location: complement(8088..8360) num qualifiers: 9 key: /locus_tag= value: "YP_pPCP10" key: /note= value: "Best Blastp hit = gi|16082688|ref|NP_395235.1| (NC_003132) hypothetical protein [ Yersinia pestis], gi|5763819|emb|CAB53172.1| (AL109969) hypothetical protein [Yersinia pestis]" key: /codon_start= value: 1 key: /transl_table= value: 11 key: /product= value: "hypothetical protein" key: /protein_id= value: "NP_995576.1" key: /db_xref= value: "GI:45478721" key: /db_xref= value: "GeneID:2767714" key: /translation= value: "MADLKKLQVYGPELPRPYADTVKGSRYKNMKELRVQFSGRPIRAFYAFDPIRRAIVLCAGDKSNDKRFYEKLVRIAEDEFTAHLNTLESK" feature key: misc_feature location: complement(8091..>8357) num qualifiers: 3 key: /locus_tag= value: "YP_pPCP10" key: /note= value: "Phage derived protein Gp49-like (DUF891); Region: Gp49; cl01470" key: /db_xref= value: "CDD:194142" feature key: variation location: 8529^8530 num qualifiers: 2 key: /note= value: "compared to AL109969" key: /replace= value: "tt" ***Record from no_end_marker.gb with the RecordParser sequence length: 6497 locus: AB070938 definition: Streptomyces avermitilis melanin biosynthetic gene cluster. accession: ['AB070938'] feature key: source location: 1..6497 num qualifiers: 3 key: /organism= value: "Streptomyces avermitilis" key: /mol_type= value: "genomic DNA" key: /db_xref= value: "taxon:33903" ***Record from wrong_sequence_indent.gb with the RecordParser sequence length: 6497 locus: AB070938 definition: Streptomyces avermitilis melanin biosynthetic gene cluster. accession: ['AB070938'] feature key: source location: 1..6497 num qualifiers: 3 key: /organism= value: "Streptomyces avermitilis" key: /mol_type= value: "genomic DNA" key: /db_xref= value: "taxon:33903" ***Record from invalid_locus_line_spacing.gb with the RecordParser sequence length: 6497 locus: AB070938 definition: Streptomyces avermitilis melanin biosynthetic gene cluster. accession: ['AB070938'] feature key: source location: 1..6497 num qualifiers: 3 key: /organism= value: "Streptomyces avermitilis" key: /mol_type= value: "genomic DNA" key: /db_xref= value: "taxon:33903" ***Record from empty_feature_qualifier.gb with the RecordParser sequence length: 6497 locus: AB070938 definition: Streptomyces avermitilis melanin biosynthetic gene cluster. accession: ['AB070938'] feature key: source location: 1..6497 num qualifiers: 5 key: /organism= value: "Streptomyces avermitilis" key: /mol_type= value: "genomic DNA" key: /db_xref= value: "taxon:33903" key: /note= value: "This is a correct note, the following one isn't" key: /note value: ***Record from invalid_misc_feature.gb with the RecordParser sequence length: 6497 locus: AB070938 definition: Streptomyces avermitilis melanin biosynthetic gene cluster. accession: ['AB070938'] feature key: source location: 1..6497 num qualifiers: 3 key: /organism= value: "Streptomyces avermitilis" key: /mol_type= value: "genomic DNA" key: /db_xref= value: "taxon:33903" ***Record from 1MRR_A.gp with the RecordParser sequence length: 375 locus: 1MRR_A definition: Chain A, Substitution Of Manganese For Iron In Ribonucleotide Reductase From Escherichia Coli. Spectroscopic And Crystallographic Characterization. accession: ['1MRR_A'] reference title: Three-dimensional structure of the free radical protein of ribonucleotide reductase reference title: Substitution of manganese for iron in ribonucleotide reductase from Escherichia coli. Spectroscopic and crystallographic characterization reference title: Direct Submission feature key: source location: 1..375 num qualifiers: 2 key: /organism= value: "Escherichia coli" key: /db_xref= value: "taxon:562" feature key: Region location: 28..340 num qualifiers: 3 key: /region_name= value: "RNRR2" key: /note= value: "Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain; cd01049" key: /db_xref= value: "CDD:153108" feature key: SecStr location: 35..46 num qualifiers: 2 key: /sec_str_type= value: "helix" key: /note= value: "helix 1" feature key: Site location: order(37,44,109..110,113,116..117,120,123,137..138,141) num qualifiers: 3 key: /site_type= value: "other" key: /note= value: "dimer interface [polypeptide binding]" key: /db_xref= value: "CDD:153108" feature key: Site location: order(48,84,115,118,122,236..237,241) num qualifiers: 3 key: /site_type= value: "other" key: /note= value: "putative radical transfer pathway" key: /db_xref= value: "CDD:153108" feature key: SecStr location: 57..65 num qualifiers: 2 key: /sec_str_type= value: "helix" key: /note= value: "helix 2" feature key: SecStr location: 67..87 num qualifiers: 2 key: /sec_str_type= value: "helix" key: /note= value: "helix 3" feature key: Site location: order(84,115,118,204,238,241) num qualifiers: 3 key: /site_type= value: "other" key: /note= value: "diiron center [ion binding]" key: /db_xref= value: "CDD:153108" feature key: Het location: join(bond(84),bond(115),bond(118),bond(238)) num qualifiers: 1 key: /heterogen= value: "( MN,1000 )" feature key: SecStr location: 102..129 num qualifiers: 2 key: /sec_str_type= value: "helix" key: /note= value: "helix 4" feature key: Het location: join(bond(115),bond(204),bond(238),bond(241)) num qualifiers: 1 key: /heterogen= value: "( MN,1001 )" feature key: Site location: 122 num qualifiers: 3 key: /site_type= value: "other" key: /note= value: "tyrosyl radical" key: /db_xref= value: "CDD:153108" feature key: SecStr location: 133..140 num qualifiers: 2 key: /sec_str_type= value: "helix" key: /note= value: "helix 5" feature key: SecStr location: 143..151 num qualifiers: 2 key: /sec_str_type= value: "helix" key: /note= value: "helix 6" feature key: SecStr location: 153..169 num qualifiers: 2 key: /sec_str_type= value: "helix" key: /note= value: "helix 7" feature key: SecStr location: 172..177 num qualifiers: 2 key: /sec_str_type= value: "sheet" key: /note= value: "strand 1" feature key: SecStr location: 180..185 num qualifiers: 2 key: /sec_str_type= value: "sheet" key: /note= value: "strand 2" feature key: SecStr location: 186..216 num qualifiers: 2 key: /sec_str_type= value: "helix" key: /note= value: "helix 8" feature key: Het location: join(bond(194),bond(272)) num qualifiers: 1 key: /heterogen= value: "( HG,1003 )" feature key: Het location: bond(196) num qualifiers: 1 key: /heterogen= value: "( HG,1005 )" feature key: Het location: join(bond(196),bond(196)) num qualifiers: 1 key: /heterogen= value: "( HG,1002 )" feature key: Het location: join(bond(210),bond(214),bond(214)) num qualifiers: 1 key: /heterogen= value: "( HG,1004 )" feature key: SecStr location: 225..253 num qualifiers: 2 key: /sec_str_type= value: "helix" key: /note= value: "helix 9" feature key: SecStr location: 260..269 num qualifiers: 2 key: /sec_str_type= value: "helix" key: /note= value: "helix 10" feature key: Bond location: bond(268,272) num qualifiers: 1 key: /bond_type= value: "disulfide" feature key: SecStr location: 270..285 num qualifiers: 2 key: /sec_str_type= value: "helix" key: /note= value: "helix 11" feature key: Het location: join(bond(284),bond(305),bond(309),bond(305)) num qualifiers: 1 key: /heterogen= value: "( HG,1006 )" feature key: SecStr location: 301..319 num qualifiers: 2 key: /sec_str_type= value: "helix" key: /note= value: "helix 12" Testing writing GenBank format... Testing GenBank writing for noref.gb... Testing for NM_006141.1 Testing GenBank writing for cor6_6.gb... Testing for X55053.1 Testing for X62281.1 Testing for M81224.1 Testing for AJ237582.1 Testing for L31939.1 Testing for AF297471.1 Testing GenBank writing for iro.gb... Testing for AL109817.1 Testing GenBank writing for pri1.gb... Testing for U05344.1 Testing GenBank writing for arab1.gb... Testing for AC007323.5 Testing GenBank writing for extra_keywords.gb... Testing for AL138972.1 Testing GenBank writing for one_of.gb... Testing for U18266.1 Testing GenBank writing for origin_line.gb... Testing for NC_002678.1 Testing feature cleaning... Testing EnsEMBL LOCUS lines... Done