CHANGES.txt Dockerfile LICENSE.txt MANIFEST.in README.md VERSION.txt icarus.py install.sh install_full.sh manual.html metaquast.py quast.py setup.py quast.egg-info/PKG-INFO quast.egg-info/SOURCES.txt quast.egg-info/dependency_links.txt quast.egg-info/not-zip-safe quast.egg-info/requires.txt quast.egg-info/top_level.txt quast_libs/N50.py quast_libs/__init__.py quast_libs/aligned_stats.py quast_libs/basic_stats.py quast_libs/contigs_analyzer.py quast_libs/create_meta_summary.py quast_libs/fastaparser.py quast_libs/gage.py quast_libs/genemark.py quast_libs/genes_parser.py quast_libs/genome_analyzer.py quast_libs/glimmer.py quast_libs/icarus.py quast_libs/icarus_builder.py quast_libs/icarus_parser.py quast_libs/icarus_utils.py quast_libs/log.py quast_libs/metautils.py quast_libs/options_parser.py quast_libs/plotter.py quast_libs/plotter_data.py quast_libs/qconfig.py quast_libs/qutils.py quast_libs/reads_analyzer.py quast_libs/reporting.py quast_libs/search_references_meta.py quast_libs/svg_alignment_plotter.py quast_libs/version.py quast_libs/MUMmer/ACKNOWLEDGEMENTS quast_libs/MUMmer/COPYRIGHT quast_libs/MUMmer/ChangeLog quast_libs/MUMmer/INSTALL quast_libs/MUMmer/LICENSE quast_libs/MUMmer/Makefile quast_libs/MUMmer/README quast_libs/MUMmer/annotate quast_libs/MUMmer/combineMUMs quast_libs/MUMmer/delta-filter quast_libs/MUMmer/dnadiff quast_libs/MUMmer/e-mem-osx quast_libs/MUMmer/exact-tandems quast_libs/MUMmer/gaps quast_libs/MUMmer/mapview quast_libs/MUMmer/mgaps quast_libs/MUMmer/mummer quast_libs/MUMmer/mummerplot quast_libs/MUMmer/nucmer quast_libs/MUMmer/nucmer2xfig quast_libs/MUMmer/promer quast_libs/MUMmer/repeat-match quast_libs/MUMmer/run-mummer1 quast_libs/MUMmer/run-mummer3 quast_libs/MUMmer/show-aligns quast_libs/MUMmer/show-coords quast_libs/MUMmer/show-diff quast_libs/MUMmer/show-snps quast_libs/MUMmer/show-tiling quast_libs/MUMmer/aux_bin/postnuc quast_libs/MUMmer/aux_bin/postpro quast_libs/MUMmer/aux_bin/prenuc quast_libs/MUMmer/aux_bin/prepro quast_libs/MUMmer/docs/README quast_libs/MUMmer/docs/differences.README quast_libs/MUMmer/docs/dnadiff.README quast_libs/MUMmer/docs/mapview.README quast_libs/MUMmer/docs/nucmer.README quast_libs/MUMmer/docs/run-mummer1.README quast_libs/MUMmer/docs/run-mummer3.README quast_libs/MUMmer/e-mem-src/LICENSE quast_libs/MUMmer/e-mem-src/Makefile quast_libs/MUMmer/e-mem-src/README quast_libs/MUMmer/e-mem-src/e-mem.cpp quast_libs/MUMmer/e-mem-src/e-mem.h quast_libs/MUMmer/e-mem-src/file.h quast_libs/MUMmer/e-mem-src/qlist.h quast_libs/MUMmer/scripts/Foundation.pm quast_libs/MUMmer/scripts/Makefile quast_libs/MUMmer/scripts/dnadiff.pl quast_libs/MUMmer/scripts/exact-tandems.csh quast_libs/MUMmer/scripts/mapview.pl quast_libs/MUMmer/scripts/mummerplot.pl quast_libs/MUMmer/scripts/nucmer.pl quast_libs/MUMmer/scripts/nucmer2xfig.pl quast_libs/MUMmer/scripts/promer.pl quast_libs/MUMmer/scripts/run-mummer1.csh quast_libs/MUMmer/scripts/run-mummer3.csh quast_libs/MUMmer/scripts/tandem-repeat.awk quast_libs/MUMmer/src/kurtz/Makedef quast_libs/MUMmer/src/kurtz/Makefile quast_libs/MUMmer/src/kurtz/README quast_libs/MUMmer/src/kurtz/Splintoptions quast_libs/MUMmer/src/kurtz/libbasedir/Cuthere.awk quast_libs/MUMmer/src/kurtz/libbasedir/Dependencies.mf quast_libs/MUMmer/src/kurtz/libbasedir/Excludemulti quast_libs/MUMmer/src/kurtz/libbasedir/Filegoals.mf quast_libs/MUMmer/src/kurtz/libbasedir/Filelists.mf quast_libs/MUMmer/src/kurtz/libbasedir/Importfiles quast_libs/MUMmer/src/kurtz/libbasedir/Makefile quast_libs/MUMmer/src/kurtz/libbasedir/Mkprotodef.sh quast_libs/MUMmer/src/kurtz/libbasedir/Mksrc.sh quast_libs/MUMmer/src/kurtz/libbasedir/README quast_libs/MUMmer/src/kurtz/libbasedir/args.h quast_libs/MUMmer/src/kurtz/libbasedir/arraydef.h quast_libs/MUMmer/src/kurtz/libbasedir/chardef.h quast_libs/MUMmer/src/kurtz/libbasedir/cleanMUMcand.c quast_libs/MUMmer/src/kurtz/libbasedir/cleanMUMcand.o quast_libs/MUMmer/src/kurtz/libbasedir/clock.c quast_libs/MUMmer/src/kurtz/libbasedir/clock.o quast_libs/MUMmer/src/kurtz/libbasedir/debug.c quast_libs/MUMmer/src/kurtz/libbasedir/debugdef.h quast_libs/MUMmer/src/kurtz/libbasedir/errordef.h quast_libs/MUMmer/src/kurtz/libbasedir/fopen.h quast_libs/MUMmer/src/kurtz/libbasedir/intbits.h quast_libs/MUMmer/src/kurtz/libbasedir/libbase.a quast_libs/MUMmer/src/kurtz/libbasedir/mapfile.c quast_libs/MUMmer/src/kurtz/libbasedir/mapfile.o quast_libs/MUMmer/src/kurtz/libbasedir/megabytes.h quast_libs/MUMmer/src/kurtz/libbasedir/minmax.h quast_libs/MUMmer/src/kurtz/libbasedir/multidef.h quast_libs/MUMmer/src/kurtz/libbasedir/multiseq.c quast_libs/MUMmer/src/kurtz/libbasedir/multiseq.o quast_libs/MUMmer/src/kurtz/libbasedir/mumcand.h quast_libs/MUMmer/src/kurtz/libbasedir/optdesc.h quast_libs/MUMmer/src/kurtz/libbasedir/procopt.c quast_libs/MUMmer/src/kurtz/libbasedir/procopt.o quast_libs/MUMmer/src/kurtz/libbasedir/protodef.h quast_libs/MUMmer/src/kurtz/libbasedir/safescpy.c quast_libs/MUMmer/src/kurtz/libbasedir/safescpy.o quast_libs/MUMmer/src/kurtz/libbasedir/seterror.c quast_libs/MUMmer/src/kurtz/libbasedir/seterror.o quast_libs/MUMmer/src/kurtz/libbasedir/space.c quast_libs/MUMmer/src/kurtz/libbasedir/space.o quast_libs/MUMmer/src/kurtz/libbasedir/spacedef.h quast_libs/MUMmer/src/kurtz/libbasedir/types.h quast_libs/MUMmer/src/kurtz/libbasedir/visible.h quast_libs/MUMmer/src/kurtz/mm3src/Dependencies.mf quast_libs/MUMmer/src/kurtz/mm3src/Filegoals.mf quast_libs/MUMmer/src/kurtz/mm3src/Makefile quast_libs/MUMmer/src/kurtz/mm3src/README quast_libs/MUMmer/src/kurtz/mm3src/findmaxmat.c quast_libs/MUMmer/src/kurtz/mm3src/findmaxmat.o quast_libs/MUMmer/src/kurtz/mm3src/findmumcand.c quast_libs/MUMmer/src/kurtz/mm3src/findmumcand.o quast_libs/MUMmer/src/kurtz/mm3src/maxmat3.c quast_libs/MUMmer/src/kurtz/mm3src/maxmat3.o quast_libs/MUMmer/src/kurtz/mm3src/maxmatdef.h quast_libs/MUMmer/src/kurtz/mm3src/maxmatinp.c quast_libs/MUMmer/src/kurtz/mm3src/maxmatinp.o quast_libs/MUMmer/src/kurtz/mm3src/maxmatopt.c quast_libs/MUMmer/src/kurtz/mm3src/maxmatopt.o quast_libs/MUMmer/src/kurtz/mm3src/procmaxmat.c quast_libs/MUMmer/src/kurtz/mm3src/procmaxmat.o quast_libs/MUMmer/src/kurtz/streesrc/Dependencies.mf quast_libs/MUMmer/src/kurtz/streesrc/Filegoals.mf quast_libs/MUMmer/src/kurtz/streesrc/Macronames quast_libs/MUMmer/src/kurtz/streesrc/Makefile quast_libs/MUMmer/src/kurtz/streesrc/Mkstreeproto.sh quast_libs/MUMmer/src/kurtz/streesrc/access.c quast_libs/MUMmer/src/kurtz/streesrc/access.o quast_libs/MUMmer/src/kurtz/streesrc/addleafcount.c quast_libs/MUMmer/src/kurtz/streesrc/addleafcount.o quast_libs/MUMmer/src/kurtz/streesrc/construct.c quast_libs/MUMmer/src/kurtz/streesrc/construct.gen quast_libs/MUMmer/src/kurtz/streesrc/construct.o quast_libs/MUMmer/src/kurtz/streesrc/depthtab.c quast_libs/MUMmer/src/kurtz/streesrc/depthtab.o quast_libs/MUMmer/src/kurtz/streesrc/dfs.c quast_libs/MUMmer/src/kurtz/streesrc/dfs.gen quast_libs/MUMmer/src/kurtz/streesrc/dfs.o quast_libs/MUMmer/src/kurtz/streesrc/ex2leav.c quast_libs/MUMmer/src/kurtz/streesrc/ex2leav.o quast_libs/MUMmer/src/kurtz/streesrc/iterator.c quast_libs/MUMmer/src/kurtz/streesrc/iterator.o quast_libs/MUMmer/src/kurtz/streesrc/libstree.a quast_libs/MUMmer/src/kurtz/streesrc/linkloc.c quast_libs/MUMmer/src/kurtz/streesrc/linkloc.o quast_libs/MUMmer/src/kurtz/streesrc/loc.c quast_libs/MUMmer/src/kurtz/streesrc/overmax.c quast_libs/MUMmer/src/kurtz/streesrc/overmax.o quast_libs/MUMmer/src/kurtz/streesrc/oversucc.c quast_libs/MUMmer/src/kurtz/streesrc/oversucc.o quast_libs/MUMmer/src/kurtz/streesrc/scanpref.c quast_libs/MUMmer/src/kurtz/streesrc/scanpref.o quast_libs/MUMmer/src/kurtz/streesrc/stree.c quast_libs/MUMmer/src/kurtz/streesrc/streeacc.h quast_libs/MUMmer/src/kurtz/streesrc/streedbg.c quast_libs/MUMmer/src/kurtz/streesrc/streedef.h quast_libs/MUMmer/src/kurtz/streesrc/streefiledoc.c quast_libs/MUMmer/src/kurtz/streesrc/streehuge.h quast_libs/MUMmer/src/kurtz/streesrc/streelarge.h quast_libs/MUMmer/src/kurtz/streesrc/streemac.h quast_libs/MUMmer/src/kurtz/streesrc/streeproto.h quast_libs/MUMmer/src/kurtz/streesrc/streesmall.h quast_libs/MUMmer/src/kurtz/streesrc/streetyp.h quast_libs/MUMmer/src/kurtz/streesrc/symboldef.h quast_libs/MUMmer/src/tigr/Makefile quast_libs/MUMmer/src/tigr/annotate.cc quast_libs/MUMmer/src/tigr/combineMUMs.cc quast_libs/MUMmer/src/tigr/delta-filter.cc quast_libs/MUMmer/src/tigr/delta.cc quast_libs/MUMmer/src/tigr/delta.hh quast_libs/MUMmer/src/tigr/delta.o quast_libs/MUMmer/src/tigr/gaps.cc quast_libs/MUMmer/src/tigr/mgaps.cc quast_libs/MUMmer/src/tigr/postnuc.cc quast_libs/MUMmer/src/tigr/postpro.cc quast_libs/MUMmer/src/tigr/prenuc.cc quast_libs/MUMmer/src/tigr/prepro.cc quast_libs/MUMmer/src/tigr/repeat-match.cc quast_libs/MUMmer/src/tigr/show-aligns.cc quast_libs/MUMmer/src/tigr/show-coords.cc quast_libs/MUMmer/src/tigr/show-diff.cc quast_libs/MUMmer/src/tigr/show-snps.cc quast_libs/MUMmer/src/tigr/show-tiling.cc quast_libs/MUMmer/src/tigr/sw_align.cc quast_libs/MUMmer/src/tigr/sw_align.hh quast_libs/MUMmer/src/tigr/sw_align.o quast_libs/MUMmer/src/tigr/sw_alignscore.hh quast_libs/MUMmer/src/tigr/tigrinc.cc quast_libs/MUMmer/src/tigr/tigrinc.hh quast_libs/MUMmer/src/tigr/tigrinc.o quast_libs/MUMmer/src/tigr/translate.cc quast_libs/MUMmer/src/tigr/translate.hh quast_libs/MUMmer/src/tigr/translate.o quast_libs/bedtools/.gitignore quast_libs/bedtools/.travis.yml quast_libs/bedtools/LICENSE quast_libs/bedtools/Makefile quast_libs/bedtools/README.md quast_libs/bedtools/RELEASE_HISTORY quast_libs/bedtools/bin/annotateBed quast_libs/bedtools/bin/bamToBed quast_libs/bedtools/bin/bamToFastq quast_libs/bedtools/bin/bed12ToBed6 quast_libs/bedtools/bin/bedToBam quast_libs/bedtools/bin/bedToIgv quast_libs/bedtools/bin/bedpeToBam quast_libs/bedtools/bin/bedtools quast_libs/bedtools/bin/closestBed quast_libs/bedtools/bin/clusterBed quast_libs/bedtools/bin/complementBed quast_libs/bedtools/bin/coverageBed quast_libs/bedtools/bin/expandCols quast_libs/bedtools/bin/fastaFromBed quast_libs/bedtools/bin/flankBed quast_libs/bedtools/bin/genomeCoverageBed quast_libs/bedtools/bin/getOverlap quast_libs/bedtools/bin/groupBy quast_libs/bedtools/bin/intersectBed quast_libs/bedtools/bin/linksBed quast_libs/bedtools/bin/mapBed quast_libs/bedtools/bin/maskFastaFromBed quast_libs/bedtools/bin/mergeBed quast_libs/bedtools/bin/multiBamCov quast_libs/bedtools/bin/multiIntersectBed quast_libs/bedtools/bin/nucBed quast_libs/bedtools/bin/pairToBed quast_libs/bedtools/bin/pairToPair quast_libs/bedtools/bin/randomBed quast_libs/bedtools/bin/shuffleBed quast_libs/bedtools/bin/slopBed quast_libs/bedtools/bin/sortBed quast_libs/bedtools/bin/subtractBed quast_libs/bedtools/bin/tagBam quast_libs/bedtools/bin/unionBedGraphs quast_libs/bedtools/bin/windowBed quast_libs/bedtools/bin/windowMaker quast_libs/bedtools/obj/BamAncillary.h quast_libs/bedtools/obj/BamAncillary.o quast_libs/bedtools/obj/BamFileReader.o quast_libs/bedtools/obj/BamRecord.o quast_libs/bedtools/obj/Bed12Interval.o quast_libs/bedtools/obj/Bed3Interval.o quast_libs/bedtools/obj/Bed4Interval.o quast_libs/bedtools/obj/Bed5Interval.o quast_libs/bedtools/obj/Bed6Interval.o quast_libs/bedtools/obj/BedGraphInterval.o quast_libs/bedtools/obj/BedPlusInterval.o quast_libs/bedtools/obj/BedtoolsDriver.o quast_libs/bedtools/obj/BinTree.o quast_libs/bedtools/obj/BlockMgr.o quast_libs/bedtools/obj/BlockedIntervals.o quast_libs/bedtools/obj/BufferedStreamMgr.o quast_libs/bedtools/obj/CloseSweep.o quast_libs/bedtools/obj/CommonHelp.o quast_libs/bedtools/obj/CompressionTools.o quast_libs/bedtools/obj/ContextBase.o quast_libs/bedtools/obj/ContextClosest.o quast_libs/bedtools/obj/ContextComplement.o quast_libs/bedtools/obj/ContextCoverage.o quast_libs/bedtools/obj/ContextFisher.o quast_libs/bedtools/obj/ContextGroupBy.o quast_libs/bedtools/obj/ContextIntersect.o quast_libs/bedtools/obj/ContextJaccard.o quast_libs/bedtools/obj/ContextMap.o quast_libs/bedtools/obj/ContextMerge.o quast_libs/bedtools/obj/ContextSample.o quast_libs/bedtools/obj/ContextSpacing.o quast_libs/bedtools/obj/ContextSubtract.o quast_libs/bedtools/obj/EmptyRecord.o quast_libs/bedtools/obj/Fasta.o quast_libs/bedtools/obj/FileReader.o quast_libs/bedtools/obj/FileRecordMergeMgr.o quast_libs/bedtools/obj/FileRecordMgr.o quast_libs/bedtools/obj/FileRecordTypeChecker.o quast_libs/bedtools/obj/GenomeFile.o quast_libs/bedtools/obj/GffPlusRecord.o quast_libs/bedtools/obj/GffRecord.o quast_libs/bedtools/obj/InputStreamMgr.o quast_libs/bedtools/obj/KeyListOps.o quast_libs/bedtools/obj/KeyListOpsMethods.o quast_libs/bedtools/obj/NewChromsweep.o quast_libs/bedtools/obj/NewGenomeFile.o quast_libs/bedtools/obj/NoPosPlusRecord.o quast_libs/bedtools/obj/ParseTools.o quast_libs/bedtools/obj/PlusFields.o quast_libs/bedtools/obj/PushBackStreamBuf.o quast_libs/bedtools/obj/QuickString.o quast_libs/bedtools/obj/Record.o quast_libs/bedtools/obj/RecordKeyList.o quast_libs/bedtools/obj/RecordKeyVector.o quast_libs/bedtools/obj/RecordList.o quast_libs/bedtools/obj/RecordMgr.o quast_libs/bedtools/obj/RecordOutputMgr.o quast_libs/bedtools/obj/RegressTest.o quast_libs/bedtools/obj/SingleLineDelimTextFileReader.o quast_libs/bedtools/obj/StrandQueue.o quast_libs/bedtools/obj/Tokenizer.o quast_libs/bedtools/obj/ToolBase.o quast_libs/bedtools/obj/VcfRecord.o quast_libs/bedtools/obj/VectorOps.o quast_libs/bedtools/obj/annotateBed.o quast_libs/bedtools/obj/annotateMain.o quast_libs/bedtools/obj/bamToBed.o quast_libs/bedtools/obj/bamToFastq.o quast_libs/bedtools/obj/bamToFastqMain.o quast_libs/bedtools/obj/bed12ToBed6.o quast_libs/bedtools/obj/bedFile.o quast_libs/bedtools/obj/bedFilePE.o quast_libs/bedtools/obj/bedGraphFile.o quast_libs/bedtools/obj/bedToBam.o quast_libs/bedtools/obj/bedToIgv.o quast_libs/bedtools/obj/bedpeToBam.o quast_libs/bedtools/obj/bedtools.o quast_libs/bedtools/obj/chromsweep.o quast_libs/bedtools/obj/closestFile.o quast_libs/bedtools/obj/closestHelp.o quast_libs/bedtools/obj/clusterBed.o quast_libs/bedtools/obj/clusterMain.o quast_libs/bedtools/obj/complementFile.o quast_libs/bedtools/obj/complementHelp.o quast_libs/bedtools/obj/coverageFile.o quast_libs/bedtools/obj/coverageHelp.o quast_libs/bedtools/obj/expand.o quast_libs/bedtools/obj/fastaFromBed.o quast_libs/bedtools/obj/fastaFromBedMain.o quast_libs/bedtools/obj/fileType.o quast_libs/bedtools/obj/fisher.o quast_libs/bedtools/obj/fisherHelp.o quast_libs/bedtools/obj/flankBed.o quast_libs/bedtools/obj/flankBedMain.o quast_libs/bedtools/obj/genomeCoverageBed.o quast_libs/bedtools/obj/genomeCoverageMain.o quast_libs/bedtools/obj/getOverlap.o quast_libs/bedtools/obj/groupBy.o quast_libs/bedtools/obj/groupByHelp.o quast_libs/bedtools/obj/gzstream.o quast_libs/bedtools/obj/intersectFile.o quast_libs/bedtools/obj/intersectHelp.o quast_libs/bedtools/obj/jaccard.o quast_libs/bedtools/obj/jaccardHelp.o quast_libs/bedtools/obj/kfunc.o quast_libs/bedtools/obj/linksBed.o quast_libs/bedtools/obj/linksMain.o quast_libs/bedtools/obj/mapFile.o quast_libs/bedtools/obj/mapHelp.o quast_libs/bedtools/obj/maskFastaFromBed.o quast_libs/bedtools/obj/maskFastaFromBedMain.o quast_libs/bedtools/obj/mergeFile.o quast_libs/bedtools/obj/mergeHelp.o quast_libs/bedtools/obj/multiBamCov.o quast_libs/bedtools/obj/multiBamCovMain.o quast_libs/bedtools/obj/multiIntersectBed.o quast_libs/bedtools/obj/multiIntersectBedMain.o quast_libs/bedtools/obj/nekSandboxMain.o quast_libs/bedtools/obj/nucBed.o quast_libs/bedtools/obj/nucBedMain.o quast_libs/bedtools/obj/pairToBed.o quast_libs/bedtools/obj/pairToBedMain.o quast_libs/bedtools/obj/pairToPair.o quast_libs/bedtools/obj/pairToPairMain.o quast_libs/bedtools/obj/randomBed.o quast_libs/bedtools/obj/randomBedMain.o quast_libs/bedtools/obj/regressTestMain.o quast_libs/bedtools/obj/reldist.o quast_libs/bedtools/obj/reldistMain.o quast_libs/bedtools/obj/sampleFile.o quast_libs/bedtools/obj/sampleHelp.o quast_libs/bedtools/obj/sequenceUtils.o quast_libs/bedtools/obj/shuffleBed.o quast_libs/bedtools/obj/shuffleBedMain.o quast_libs/bedtools/obj/slopBed.o quast_libs/bedtools/obj/slopBedMain.o quast_libs/bedtools/obj/sortBed.o quast_libs/bedtools/obj/sortMain.o quast_libs/bedtools/obj/spacingFile.o quast_libs/bedtools/obj/spacingHelp.o quast_libs/bedtools/obj/split.o quast_libs/bedtools/obj/splitBed.o quast_libs/bedtools/obj/splitBedMain.o quast_libs/bedtools/obj/subtractFile.o quast_libs/bedtools/obj/subtractHelp.o quast_libs/bedtools/obj/tabFile.o quast_libs/bedtools/obj/tagBam.o quast_libs/bedtools/obj/tagBamMain.o quast_libs/bedtools/obj/unionBedGraphs.o quast_libs/bedtools/obj/unionBedGraphsMain.o quast_libs/bedtools/obj/version.o quast_libs/bedtools/obj/windowBed.o quast_libs/bedtools/obj/windowMain.o quast_libs/bedtools/obj/windowMaker.o quast_libs/bedtools/obj/windowMakerMain.o quast_libs/bedtools/scripts/makeBashScripts.py quast_libs/bedtools/scripts/vcfsort.sh quast_libs/bedtools/src/bedtools.cpp quast_libs/bedtools/src/annotateBed/Makefile quast_libs/bedtools/src/annotateBed/annotateBed.cpp quast_libs/bedtools/src/annotateBed/annotateBed.h quast_libs/bedtools/src/annotateBed/annotateMain.cpp quast_libs/bedtools/src/bamToBed/Makefile quast_libs/bedtools/src/bamToBed/bamToBed.cpp quast_libs/bedtools/src/bamToFastq/Makefile quast_libs/bedtools/src/bamToFastq/bamToFastq.cpp quast_libs/bedtools/src/bamToFastq/bamToFastq.h quast_libs/bedtools/src/bamToFastq/bamToFastqMain.cpp quast_libs/bedtools/src/bed12ToBed6/Makefile quast_libs/bedtools/src/bed12ToBed6/bed12ToBed6.cpp quast_libs/bedtools/src/bedToBam/Makefile quast_libs/bedtools/src/bedToBam/bedToBam.cpp quast_libs/bedtools/src/bedToIgv/Makefile quast_libs/bedtools/src/bedToIgv/bedToIgv.cpp quast_libs/bedtools/src/bedpeToBam/Makefile quast_libs/bedtools/src/bedpeToBam/bedpeToBam.cpp quast_libs/bedtools/src/bedpeToBam/notes.txt quast_libs/bedtools/src/closestFile/Makefile quast_libs/bedtools/src/closestFile/closestFile.cpp quast_libs/bedtools/src/closestFile/closestFile.h quast_libs/bedtools/src/closestFile/closestHelp.cpp quast_libs/bedtools/src/clusterBed/Makefile quast_libs/bedtools/src/clusterBed/clusterBed.cpp quast_libs/bedtools/src/clusterBed/clusterBed.h quast_libs/bedtools/src/clusterBed/clusterMain.cpp quast_libs/bedtools/src/complementFile/Makefile quast_libs/bedtools/src/complementFile/complementFile.cpp quast_libs/bedtools/src/complementFile/complementFile.h quast_libs/bedtools/src/complementFile/complementHelp.cpp quast_libs/bedtools/src/coverageFile/Makefile quast_libs/bedtools/src/coverageFile/coverageFile.cpp quast_libs/bedtools/src/coverageFile/coverageFile.h quast_libs/bedtools/src/coverageFile/coverageHelp.cpp quast_libs/bedtools/src/expand/Makefile quast_libs/bedtools/src/expand/expand.cpp quast_libs/bedtools/src/fastaFromBed/Makefile quast_libs/bedtools/src/fastaFromBed/fastaFromBed.cpp quast_libs/bedtools/src/fastaFromBed/fastaFromBed.h quast_libs/bedtools/src/fastaFromBed/fastaFromBedMain.cpp quast_libs/bedtools/src/fisher/Makefile quast_libs/bedtools/src/fisher/fisher.cpp quast_libs/bedtools/src/fisher/fisher.h quast_libs/bedtools/src/fisher/fisherHelp.cpp quast_libs/bedtools/src/fisher/kfunc.cpp quast_libs/bedtools/src/fisher/kfunc.h quast_libs/bedtools/src/flankBed/Makefile quast_libs/bedtools/src/flankBed/flankBed.cpp quast_libs/bedtools/src/flankBed/flankBed.h quast_libs/bedtools/src/flankBed/flankBedMain.cpp quast_libs/bedtools/src/genomeCoverageBed/Makefile quast_libs/bedtools/src/genomeCoverageBed/genomeCoverageBed.cpp quast_libs/bedtools/src/genomeCoverageBed/genomeCoverageBed.h quast_libs/bedtools/src/genomeCoverageBed/genomeCoverageMain.cpp quast_libs/bedtools/src/getOverlap/Makefile quast_libs/bedtools/src/getOverlap/getOverlap.cpp quast_libs/bedtools/src/groupBy/Makefile quast_libs/bedtools/src/groupBy/groupBy.cpp quast_libs/bedtools/src/groupBy/groupBy.h quast_libs/bedtools/src/groupBy/groupByHelp.cpp quast_libs/bedtools/src/intersectFile/Makefile quast_libs/bedtools/src/intersectFile/intersectFile.cpp quast_libs/bedtools/src/intersectFile/intersectFile.h quast_libs/bedtools/src/intersectFile/intersectHelp.cpp quast_libs/bedtools/src/jaccard/Makefile quast_libs/bedtools/src/jaccard/jaccard.cpp quast_libs/bedtools/src/jaccard/jaccard.h quast_libs/bedtools/src/jaccard/jaccardHelp.cpp quast_libs/bedtools/src/linksBed/Makefile quast_libs/bedtools/src/linksBed/linksBed.cpp quast_libs/bedtools/src/linksBed/linksBed.h quast_libs/bedtools/src/linksBed/linksMain.cpp quast_libs/bedtools/src/mapFile/Makefile quast_libs/bedtools/src/mapFile/mapFile.cpp quast_libs/bedtools/src/mapFile/mapFile.h quast_libs/bedtools/src/mapFile/mapHelp.cpp quast_libs/bedtools/src/maskFastaFromBed/Makefile quast_libs/bedtools/src/maskFastaFromBed/maskFastaFromBed.cpp quast_libs/bedtools/src/maskFastaFromBed/maskFastaFromBed.h quast_libs/bedtools/src/maskFastaFromBed/maskFastaFromBedMain.cpp quast_libs/bedtools/src/mergeFile/Makefile quast_libs/bedtools/src/mergeFile/mergeFile.cpp quast_libs/bedtools/src/mergeFile/mergeFile.h quast_libs/bedtools/src/mergeFile/mergeHelp.cpp quast_libs/bedtools/src/multiBamCov/Makefile quast_libs/bedtools/src/multiBamCov/multiBamCov.cpp quast_libs/bedtools/src/multiBamCov/multiBamCov.h quast_libs/bedtools/src/multiBamCov/multiBamCovMain.cpp quast_libs/bedtools/src/multiIntersectBed/Makefile quast_libs/bedtools/src/multiIntersectBed/multiIntersectBed.cpp quast_libs/bedtools/src/multiIntersectBed/multiIntersectBed.h quast_libs/bedtools/src/multiIntersectBed/multiIntersectBedMain.cpp quast_libs/bedtools/src/nekSandbox1/FormatGuess.h quast_libs/bedtools/src/nekSandbox1/Makefile quast_libs/bedtools/src/nekSandbox1/nekSandboxMain.cpp quast_libs/bedtools/src/nucBed/LargeFileSupport.h quast_libs/bedtools/src/nucBed/Makefile quast_libs/bedtools/src/nucBed/nucBed.cpp quast_libs/bedtools/src/nucBed/nucBed.h quast_libs/bedtools/src/nucBed/nucBedMain.cpp quast_libs/bedtools/src/pairToBed/Makefile quast_libs/bedtools/src/pairToBed/pairToBed.cpp quast_libs/bedtools/src/pairToBed/pairToBed.h quast_libs/bedtools/src/pairToBed/pairToBedMain.cpp quast_libs/bedtools/src/pairToPair/Makefile quast_libs/bedtools/src/pairToPair/pairToPair.cpp quast_libs/bedtools/src/pairToPair/pairToPair.h quast_libs/bedtools/src/pairToPair/pairToPairMain.cpp quast_libs/bedtools/src/randomBed/Makefile quast_libs/bedtools/src/randomBed/randomBed.cpp quast_libs/bedtools/src/randomBed/randomBed.h quast_libs/bedtools/src/randomBed/randomBedMain.cpp quast_libs/bedtools/src/regressTest/Makefile quast_libs/bedtools/src/regressTest/RegressTest.cpp quast_libs/bedtools/src/regressTest/RegressTest.h quast_libs/bedtools/src/regressTest/regressTestMain.cpp quast_libs/bedtools/src/reldist/Makefile quast_libs/bedtools/src/reldist/reldist.cpp quast_libs/bedtools/src/reldist/reldist.h quast_libs/bedtools/src/reldist/reldistMain.cpp quast_libs/bedtools/src/sampleFile/Makefile quast_libs/bedtools/src/sampleFile/sampleFile.cpp quast_libs/bedtools/src/sampleFile/sampleFile.h quast_libs/bedtools/src/sampleFile/sampleHelp.cpp quast_libs/bedtools/src/shuffleBed/Makefile quast_libs/bedtools/src/shuffleBed/shuffleBed.cpp quast_libs/bedtools/src/shuffleBed/shuffleBed.h quast_libs/bedtools/src/shuffleBed/shuffleBedMain.cpp quast_libs/bedtools/src/slopBed/Makefile quast_libs/bedtools/src/slopBed/slopBed.cpp quast_libs/bedtools/src/slopBed/slopBed.h quast_libs/bedtools/src/slopBed/slopBedMain.cpp quast_libs/bedtools/src/sortBed/Makefile quast_libs/bedtools/src/sortBed/sortBed.cpp quast_libs/bedtools/src/sortBed/sortBed.h quast_libs/bedtools/src/sortBed/sortMain.cpp quast_libs/bedtools/src/spacingFile/Makefile quast_libs/bedtools/src/spacingFile/spacingFile.cpp quast_libs/bedtools/src/spacingFile/spacingFile.h quast_libs/bedtools/src/spacingFile/spacingHelp.cpp quast_libs/bedtools/src/split/Makefile quast_libs/bedtools/src/split/splitBed.cpp quast_libs/bedtools/src/split/splitBed.h quast_libs/bedtools/src/split/splitBedMain.cpp quast_libs/bedtools/src/subtractFile/Makefile quast_libs/bedtools/src/subtractFile/subtractFile.cpp quast_libs/bedtools/src/subtractFile/subtractFile.h quast_libs/bedtools/src/subtractFile/subtractHelp.cpp quast_libs/bedtools/src/tagBam/Makefile quast_libs/bedtools/src/tagBam/tagBam.cpp quast_libs/bedtools/src/tagBam/tagBam.h quast_libs/bedtools/src/tagBam/tagBamMain.cpp quast_libs/bedtools/src/unionBedGraphs/Makefile quast_libs/bedtools/src/unionBedGraphs/unionBedGraphs.cpp quast_libs/bedtools/src/unionBedGraphs/unionBedGraphs.h quast_libs/bedtools/src/unionBedGraphs/unionBedGraphsMain.cpp quast_libs/bedtools/src/utils/BamTools/.gitignore quast_libs/bedtools/src/utils/BamTools/LICENSE quast_libs/bedtools/src/utils/BamTools/Makefile quast_libs/bedtools/src/utils/BamTools-Ancillary/BamAncillary.cpp quast_libs/bedtools/src/utils/BamTools-Ancillary/BamAncillary.h quast_libs/bedtools/src/utils/BamTools-Ancillary/Makefile quast_libs/bedtools/src/utils/BamTools/include/api/BamAlgorithms.h quast_libs/bedtools/src/utils/BamTools/include/api/BamAlignment.h quast_libs/bedtools/src/utils/BamTools/include/api/BamAux.h quast_libs/bedtools/src/utils/BamTools/include/api/BamConstants.h quast_libs/bedtools/src/utils/BamTools/include/api/BamIndex.h quast_libs/bedtools/src/utils/BamTools/include/api/BamMultiReader.h quast_libs/bedtools/src/utils/BamTools/include/api/BamReader.h quast_libs/bedtools/src/utils/BamTools/include/api/BamWriter.h quast_libs/bedtools/src/utils/BamTools/include/api/IBamIODevice.h quast_libs/bedtools/src/utils/BamTools/include/api/SamConstants.h quast_libs/bedtools/src/utils/BamTools/include/api/SamHeader.h quast_libs/bedtools/src/utils/BamTools/include/api/SamProgram.h quast_libs/bedtools/src/utils/BamTools/include/api/SamProgramChain.h quast_libs/bedtools/src/utils/BamTools/include/api/SamReadGroup.h quast_libs/bedtools/src/utils/BamTools/include/api/SamReadGroupDictionary.h quast_libs/bedtools/src/utils/BamTools/include/api/SamSequence.h quast_libs/bedtools/src/utils/BamTools/include/api/SamSequenceDictionary.h quast_libs/bedtools/src/utils/BamTools/include/api/api_global.h quast_libs/bedtools/src/utils/BamTools/include/shared/bamtools_global.h quast_libs/bedtools/src/utils/BamTools/lib/libbamtools.a quast_libs/bedtools/src/utils/BamTools/src/api/BamAlgorithms.h quast_libs/bedtools/src/utils/BamTools/src/api/BamAlignment.cpp quast_libs/bedtools/src/utils/BamTools/src/api/BamAlignment.h quast_libs/bedtools/src/utils/BamTools/src/api/BamAlignment.o quast_libs/bedtools/src/utils/BamTools/src/api/BamAux.h quast_libs/bedtools/src/utils/BamTools/src/api/BamConstants.h quast_libs/bedtools/src/utils/BamTools/src/api/BamIndex.h quast_libs/bedtools/src/utils/BamTools/src/api/BamMultiReader.cpp quast_libs/bedtools/src/utils/BamTools/src/api/BamMultiReader.h quast_libs/bedtools/src/utils/BamTools/src/api/BamMultiReader.o quast_libs/bedtools/src/utils/BamTools/src/api/BamReader.cpp quast_libs/bedtools/src/utils/BamTools/src/api/BamReader.h quast_libs/bedtools/src/utils/BamTools/src/api/BamReader.o quast_libs/bedtools/src/utils/BamTools/src/api/BamWriter.cpp quast_libs/bedtools/src/utils/BamTools/src/api/BamWriter.h quast_libs/bedtools/src/utils/BamTools/src/api/BamWriter.o quast_libs/bedtools/src/utils/BamTools/src/api/IBamIODevice.h quast_libs/bedtools/src/utils/BamTools/src/api/SamConstants.h quast_libs/bedtools/src/utils/BamTools/src/api/SamHeader.cpp quast_libs/bedtools/src/utils/BamTools/src/api/SamHeader.h quast_libs/bedtools/src/utils/BamTools/src/api/SamHeader.o quast_libs/bedtools/src/utils/BamTools/src/api/SamProgram.cpp quast_libs/bedtools/src/utils/BamTools/src/api/SamProgram.h quast_libs/bedtools/src/utils/BamTools/src/api/SamProgram.o quast_libs/bedtools/src/utils/BamTools/src/api/SamProgramChain.cpp quast_libs/bedtools/src/utils/BamTools/src/api/SamProgramChain.h quast_libs/bedtools/src/utils/BamTools/src/api/SamProgramChain.o quast_libs/bedtools/src/utils/BamTools/src/api/SamReadGroup.cpp quast_libs/bedtools/src/utils/BamTools/src/api/SamReadGroup.h quast_libs/bedtools/src/utils/BamTools/src/api/SamReadGroup.o quast_libs/bedtools/src/utils/BamTools/src/api/SamReadGroupDictionary.cpp quast_libs/bedtools/src/utils/BamTools/src/api/SamReadGroupDictionary.h quast_libs/bedtools/src/utils/BamTools/src/api/SamReadGroupDictionary.o quast_libs/bedtools/src/utils/BamTools/src/api/SamSequence.cpp quast_libs/bedtools/src/utils/BamTools/src/api/SamSequence.h quast_libs/bedtools/src/utils/BamTools/src/api/SamSequence.o quast_libs/bedtools/src/utils/BamTools/src/api/SamSequenceDictionary.cpp quast_libs/bedtools/src/utils/BamTools/src/api/SamSequenceDictionary.h quast_libs/bedtools/src/utils/BamTools/src/api/SamSequenceDictionary.o quast_libs/bedtools/src/utils/BamTools/src/api/api_global.h quast_libs/bedtools/src/utils/BamTools/src/api/algorithms/Sort.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamHeader_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamHeader_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamHeader_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamMultiMerger_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamMultiReader_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamMultiReader_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamMultiReader_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamRandomAccessController_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamRandomAccessController_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamRandomAccessController_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamReader_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamReader_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamReader_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamWriter_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamWriter_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamWriter_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/index/BamIndexFactory_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/index/BamIndexFactory_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/index/BamIndexFactory_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/index/BamStandardIndex_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/index/BamStandardIndex_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/index/BamStandardIndex_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/index/BamToolsIndex_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/index/BamToolsIndex_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/index/BamToolsIndex_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamDeviceFactory_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamDeviceFactory_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamDeviceFactory_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamFile_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamFile_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamFile_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamFtp_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamFtp_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamFtp_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamHttp_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamHttp_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamHttp_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamPipe_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamPipe_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamPipe_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BgzfStream_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BgzfStream_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BgzfStream_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/ByteArray_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/ByteArray_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/ByteArray_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/HostAddress_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/HostAddress_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/HostAddress_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/HostInfo_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/HostInfo_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/HostInfo_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/HttpHeader_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/HttpHeader_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/HttpHeader_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/ILocalIODevice_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/ILocalIODevice_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/ILocalIODevice_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/NetUnix_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/NetWin_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/RollingBuffer_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/RollingBuffer_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/RollingBuffer_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/StdStreamDevice_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/TcpSocketEngine_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/TcpSocketEngine_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/TcpSocketEngine_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/TcpSocketEngine_unix_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/TcpSocketEngine_unix_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/TcpSocketEngine_win_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/TcpSocket_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/TcpSocket_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/TcpSocket_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/sam/SamFormatParser_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/sam/SamFormatParser_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/sam/SamFormatParser_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/sam/SamFormatPrinter_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/sam/SamFormatPrinter_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/sam/SamFormatPrinter_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/sam/SamHeaderValidator_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/sam/SamHeaderValidator_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/sam/SamHeaderValidator_p.o quast_libs/bedtools/src/utils/BamTools/src/api/internal/sam/SamHeaderVersion_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/utils/BamException_p.cpp quast_libs/bedtools/src/utils/BamTools/src/api/internal/utils/BamException_p.h quast_libs/bedtools/src/utils/BamTools/src/api/internal/utils/BamException_p.o quast_libs/bedtools/src/utils/BamTools/src/shared/bamtools_global.h quast_libs/bedtools/src/utils/BinTree/BinTree.cpp quast_libs/bedtools/src/utils/BinTree/BinTree.h quast_libs/bedtools/src/utils/BinTree/Makefile quast_libs/bedtools/src/utils/BlockedIntervals/BlockedIntervals.cpp quast_libs/bedtools/src/utils/BlockedIntervals/BlockedIntervals.h quast_libs/bedtools/src/utils/BlockedIntervals/Makefile quast_libs/bedtools/src/utils/Contexts/ContextBase.cpp quast_libs/bedtools/src/utils/Contexts/ContextBase.h quast_libs/bedtools/src/utils/Contexts/ContextClosest.cpp quast_libs/bedtools/src/utils/Contexts/ContextClosest.h quast_libs/bedtools/src/utils/Contexts/ContextComplement.cpp quast_libs/bedtools/src/utils/Contexts/ContextComplement.h quast_libs/bedtools/src/utils/Contexts/ContextCoverage.cpp quast_libs/bedtools/src/utils/Contexts/ContextCoverage.h quast_libs/bedtools/src/utils/Contexts/ContextFisher.cpp quast_libs/bedtools/src/utils/Contexts/ContextFisher.h quast_libs/bedtools/src/utils/Contexts/ContextGroupBy.cpp quast_libs/bedtools/src/utils/Contexts/ContextGroupBy.h quast_libs/bedtools/src/utils/Contexts/ContextIntersect.cpp quast_libs/bedtools/src/utils/Contexts/ContextIntersect.h quast_libs/bedtools/src/utils/Contexts/ContextJaccard.cpp quast_libs/bedtools/src/utils/Contexts/ContextJaccard.h quast_libs/bedtools/src/utils/Contexts/ContextMap.cpp quast_libs/bedtools/src/utils/Contexts/ContextMap.h quast_libs/bedtools/src/utils/Contexts/ContextMerge.cpp quast_libs/bedtools/src/utils/Contexts/ContextMerge.h quast_libs/bedtools/src/utils/Contexts/ContextSample.cpp quast_libs/bedtools/src/utils/Contexts/ContextSample.h quast_libs/bedtools/src/utils/Contexts/ContextSpacing.cpp quast_libs/bedtools/src/utils/Contexts/ContextSpacing.h quast_libs/bedtools/src/utils/Contexts/ContextSubtract.cpp quast_libs/bedtools/src/utils/Contexts/ContextSubtract.h quast_libs/bedtools/src/utils/Contexts/Makefile quast_libs/bedtools/src/utils/Fasta/Fasta.cpp quast_libs/bedtools/src/utils/Fasta/Fasta.h quast_libs/bedtools/src/utils/Fasta/LargeFileSupport.h quast_libs/bedtools/src/utils/Fasta/Makefile quast_libs/bedtools/src/utils/Fasta/split.cpp quast_libs/bedtools/src/utils/Fasta/split.h quast_libs/bedtools/src/utils/FileRecordTools/FileRecordMergeMgr.cpp quast_libs/bedtools/src/utils/FileRecordTools/FileRecordMergeMgr.h quast_libs/bedtools/src/utils/FileRecordTools/FileRecordMgr.cpp quast_libs/bedtools/src/utils/FileRecordTools/FileRecordMgr.h quast_libs/bedtools/src/utils/FileRecordTools/Makefile quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/BamFileReader.cpp quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/BamFileReader.h quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/BufferedStreamMgr.cpp quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/BufferedStreamMgr.h quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/FileReader.cpp quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/FileReader.h quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/InputStreamMgr.cpp quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/InputStreamMgr.h quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/Makefile quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/SingleLineDelimTextFileReader.cpp quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/SingleLineDelimTransferBuffer.cpp quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/SingleLineDelimTransferBuffer.h quast_libs/bedtools/src/utils/FileRecordTools/Records/BamRecord.cpp quast_libs/bedtools/src/utils/FileRecordTools/Records/BamRecord.h quast_libs/bedtools/src/utils/FileRecordTools/Records/Bed12Interval.cpp quast_libs/bedtools/src/utils/FileRecordTools/Records/Bed12Interval.h quast_libs/bedtools/src/utils/FileRecordTools/Records/Bed3Interval.cpp quast_libs/bedtools/src/utils/FileRecordTools/Records/Bed3Interval.h quast_libs/bedtools/src/utils/FileRecordTools/Records/Bed4Interval.cpp quast_libs/bedtools/src/utils/FileRecordTools/Records/Bed4Interval.h quast_libs/bedtools/src/utils/FileRecordTools/Records/Bed5Interval.cpp quast_libs/bedtools/src/utils/FileRecordTools/Records/Bed5Interval.h quast_libs/bedtools/src/utils/FileRecordTools/Records/Bed6Interval.cpp quast_libs/bedtools/src/utils/FileRecordTools/Records/Bed6Interval.h quast_libs/bedtools/src/utils/FileRecordTools/Records/BedGraphInterval.cpp quast_libs/bedtools/src/utils/FileRecordTools/Records/BedGraphInterval.h quast_libs/bedtools/src/utils/FileRecordTools/Records/BedPlusInterval.cpp quast_libs/bedtools/src/utils/FileRecordTools/Records/BedPlusInterval.h quast_libs/bedtools/src/utils/FileRecordTools/Records/BlockMgr.cpp quast_libs/bedtools/src/utils/FileRecordTools/Records/BlockMgr.h quast_libs/bedtools/src/utils/FileRecordTools/Records/EmptyRecord.cpp quast_libs/bedtools/src/utils/FileRecordTools/Records/EmptyRecord.h quast_libs/bedtools/src/utils/FileRecordTools/Records/GffPlusRecord.cpp quast_libs/bedtools/src/utils/FileRecordTools/Records/GffPlusRecord.h quast_libs/bedtools/src/utils/FileRecordTools/Records/GffRecord.cpp quast_libs/bedtools/src/utils/FileRecordTools/Records/GffRecord.h quast_libs/bedtools/src/utils/FileRecordTools/Records/Makefile quast_libs/bedtools/src/utils/FileRecordTools/Records/NoPosPlusRecord.cpp quast_libs/bedtools/src/utils/FileRecordTools/Records/NoPosPlusRecord.h quast_libs/bedtools/src/utils/FileRecordTools/Records/PlusFields.cpp quast_libs/bedtools/src/utils/FileRecordTools/Records/PlusFields.h quast_libs/bedtools/src/utils/FileRecordTools/Records/Record.cpp quast_libs/bedtools/src/utils/FileRecordTools/Records/Record.h quast_libs/bedtools/src/utils/FileRecordTools/Records/RecordKeyList.cpp quast_libs/bedtools/src/utils/FileRecordTools/Records/RecordKeyList.h quast_libs/bedtools/src/utils/FileRecordTools/Records/RecordKeyVector.cpp quast_libs/bedtools/src/utils/FileRecordTools/Records/RecordKeyVector.h quast_libs/bedtools/src/utils/FileRecordTools/Records/RecordList.cpp quast_libs/bedtools/src/utils/FileRecordTools/Records/RecordList.h quast_libs/bedtools/src/utils/FileRecordTools/Records/RecordMgr.cpp quast_libs/bedtools/src/utils/FileRecordTools/Records/RecordMgr.h quast_libs/bedtools/src/utils/FileRecordTools/Records/StrandQueue.cpp quast_libs/bedtools/src/utils/FileRecordTools/Records/StrandQueue.h quast_libs/bedtools/src/utils/FileRecordTools/Records/VcfRecord.cpp quast_libs/bedtools/src/utils/FileRecordTools/Records/VcfRecord.h quast_libs/bedtools/src/utils/GenomeFile/GenomeFile.cpp quast_libs/bedtools/src/utils/GenomeFile/GenomeFile.h quast_libs/bedtools/src/utils/GenomeFile/Makefile quast_libs/bedtools/src/utils/GenomeFile/NewGenomeFile.cpp quast_libs/bedtools/src/utils/GenomeFile/NewGenomeFile.h quast_libs/bedtools/src/utils/KeyListOps/KeyListOps.cpp quast_libs/bedtools/src/utils/KeyListOps/KeyListOps.h quast_libs/bedtools/src/utils/KeyListOps/KeyListOpsMethods.cpp quast_libs/bedtools/src/utils/KeyListOps/KeyListOpsMethods.h quast_libs/bedtools/src/utils/KeyListOps/Makefile quast_libs/bedtools/src/utils/NewChromsweep/CloseSweep.cpp quast_libs/bedtools/src/utils/NewChromsweep/CloseSweep.h quast_libs/bedtools/src/utils/NewChromsweep/Makefile quast_libs/bedtools/src/utils/NewChromsweep/NewChromsweep.cpp quast_libs/bedtools/src/utils/NewChromsweep/NewChromsweep.h quast_libs/bedtools/src/utils/Point/Point.h quast_libs/bedtools/src/utils/RecordOutputMgr/Makefile quast_libs/bedtools/src/utils/RecordOutputMgr/RecordOutputMgr.cpp quast_libs/bedtools/src/utils/RecordOutputMgr/RecordOutputMgr.h quast_libs/bedtools/src/utils/ToolBase/Makefile quast_libs/bedtools/src/utils/ToolBase/ToolBase.cpp quast_libs/bedtools/src/utils/ToolBase/ToolBase.h quast_libs/bedtools/src/utils/VectorOps/Makefile quast_libs/bedtools/src/utils/VectorOps/VectorOps.cpp quast_libs/bedtools/src/utils/VectorOps/VectorOps.h quast_libs/bedtools/src/utils/bedFile/Makefile quast_libs/bedtools/src/utils/bedFile/bedFile.cpp quast_libs/bedtools/src/utils/bedFile/bedFile.h quast_libs/bedtools/src/utils/bedFilePE/Makefile quast_libs/bedtools/src/utils/bedFilePE/bedFilePE.cpp quast_libs/bedtools/src/utils/bedFilePE/bedFilePE.h quast_libs/bedtools/src/utils/bedGraphFile/Makefile quast_libs/bedtools/src/utils/bedGraphFile/bedGraphFile.cpp quast_libs/bedtools/src/utils/bedGraphFile/bedGraphFile.h quast_libs/bedtools/src/utils/chromsweep/Makefile quast_libs/bedtools/src/utils/chromsweep/chromsweep.cpp quast_libs/bedtools/src/utils/chromsweep/chromsweep.h quast_libs/bedtools/src/utils/driver/BedtoolsDriver.cpp quast_libs/bedtools/src/utils/driver/BedtoolsDriver.h quast_libs/bedtools/src/utils/driver/Makefile quast_libs/bedtools/src/utils/fileType/FileRecordTypeChecker.cpp quast_libs/bedtools/src/utils/fileType/FileRecordTypeChecker.h quast_libs/bedtools/src/utils/fileType/Makefile quast_libs/bedtools/src/utils/fileType/fileType.cpp quast_libs/bedtools/src/utils/fileType/fileType.h quast_libs/bedtools/src/utils/general/BTlist.h quast_libs/bedtools/src/utils/general/BedtoolsTypes.h quast_libs/bedtools/src/utils/general/CommonHelp.cpp quast_libs/bedtools/src/utils/general/CommonHelp.h quast_libs/bedtools/src/utils/general/CompressionTools.cpp quast_libs/bedtools/src/utils/general/CompressionTools.h quast_libs/bedtools/src/utils/general/ErrorMsg.cpp quast_libs/bedtools/src/utils/general/ErrorMsg.h quast_libs/bedtools/src/utils/general/FreeList.h quast_libs/bedtools/src/utils/general/InflateStreamBuf.h quast_libs/bedtools/src/utils/general/Makefile quast_libs/bedtools/src/utils/general/ParseTools.cpp quast_libs/bedtools/src/utils/general/ParseTools.h quast_libs/bedtools/src/utils/general/PushBackStreamBuf.cpp quast_libs/bedtools/src/utils/general/PushBackStreamBuf.h quast_libs/bedtools/src/utils/general/QuickString.cpp quast_libs/bedtools/src/utils/general/QuickString.h quast_libs/bedtools/src/utils/general/Tokenizer.cpp quast_libs/bedtools/src/utils/general/Tokenizer.h quast_libs/bedtools/src/utils/gzstream/COPYING.LIB quast_libs/bedtools/src/utils/gzstream/Makefile quast_libs/bedtools/src/utils/gzstream/README quast_libs/bedtools/src/utils/gzstream/gzstream.C quast_libs/bedtools/src/utils/gzstream/gzstream.h quast_libs/bedtools/src/utils/gzstream/version quast_libs/bedtools/src/utils/lineFileUtilities/lineFileUtilities.h quast_libs/bedtools/src/utils/sequenceUtilities/Makefile quast_libs/bedtools/src/utils/sequenceUtilities/sequenceUtils.cpp quast_libs/bedtools/src/utils/sequenceUtilities/sequenceUtils.h quast_libs/bedtools/src/utils/stringUtilities/stringUtilities.h quast_libs/bedtools/src/utils/tabFile/Makefile quast_libs/bedtools/src/utils/tabFile/tabFile.cpp quast_libs/bedtools/src/utils/tabFile/tabFile.h quast_libs/bedtools/src/utils/version/Makefile quast_libs/bedtools/src/utils/version/version.cpp quast_libs/bedtools/src/utils/version/version.h quast_libs/bedtools/src/utils/version/version_git.h quast_libs/bedtools/src/utils/version/version_release.txt quast_libs/bedtools/src/windowBed/Makefile quast_libs/bedtools/src/windowBed/windowBed.cpp quast_libs/bedtools/src/windowBed/windowBed.h quast_libs/bedtools/src/windowBed/windowMain.cpp quast_libs/bedtools/src/windowMaker/Makefile quast_libs/bedtools/src/windowMaker/windowMaker.cpp quast_libs/bedtools/src/windowMaker/windowMaker.h quast_libs/bedtools/src/windowMaker/windowMakerMain.cpp quast_libs/bwa/.gitignore quast_libs/bwa/.travis.yml quast_libs/bwa/COPYING quast_libs/bwa/ChangeLog quast_libs/bwa/Makefile quast_libs/bwa/NEWS.md quast_libs/bwa/QSufSort.c quast_libs/bwa/QSufSort.h quast_libs/bwa/QSufSort.o quast_libs/bwa/README-alt.md quast_libs/bwa/README.md quast_libs/bwa/bamlite.c quast_libs/bwa/bamlite.h quast_libs/bwa/bamlite.o quast_libs/bwa/bntseq.c quast_libs/bwa/bntseq.h quast_libs/bwa/bntseq.o quast_libs/bwa/bwa quast_libs/bwa/bwa.1 quast_libs/bwa/bwa.c quast_libs/bwa/bwa.h quast_libs/bwa/bwa.o quast_libs/bwa/bwamem.c quast_libs/bwa/bwamem.h quast_libs/bwa/bwamem.o quast_libs/bwa/bwamem_extra.c quast_libs/bwa/bwamem_extra.o quast_libs/bwa/bwamem_pair.c quast_libs/bwa/bwamem_pair.o quast_libs/bwa/bwape.c quast_libs/bwa/bwape.o quast_libs/bwa/bwase.c quast_libs/bwa/bwase.h quast_libs/bwa/bwase.o quast_libs/bwa/bwaseqio.c quast_libs/bwa/bwaseqio.o quast_libs/bwa/bwashm.c quast_libs/bwa/bwashm.o quast_libs/bwa/bwt.c quast_libs/bwa/bwt.h quast_libs/bwa/bwt.o quast_libs/bwa/bwt_gen.c quast_libs/bwa/bwt_gen.o quast_libs/bwa/bwt_lite.c quast_libs/bwa/bwt_lite.h quast_libs/bwa/bwt_lite.o quast_libs/bwa/bwtaln.c quast_libs/bwa/bwtaln.h quast_libs/bwa/bwtaln.o quast_libs/bwa/bwtgap.c quast_libs/bwa/bwtgap.h quast_libs/bwa/bwtgap.o quast_libs/bwa/bwtindex.c quast_libs/bwa/bwtindex.o quast_libs/bwa/bwtsw2.h quast_libs/bwa/bwtsw2_aux.c quast_libs/bwa/bwtsw2_aux.o quast_libs/bwa/bwtsw2_chain.c quast_libs/bwa/bwtsw2_chain.o quast_libs/bwa/bwtsw2_core.c quast_libs/bwa/bwtsw2_core.o quast_libs/bwa/bwtsw2_main.c quast_libs/bwa/bwtsw2_main.o quast_libs/bwa/bwtsw2_pair.c quast_libs/bwa/bwtsw2_pair.o quast_libs/bwa/example.c quast_libs/bwa/fastmap.c quast_libs/bwa/fastmap.o quast_libs/bwa/is.c quast_libs/bwa/is.o quast_libs/bwa/kbtree.h quast_libs/bwa/khash.h quast_libs/bwa/kopen.c quast_libs/bwa/kopen.o quast_libs/bwa/kseq.h quast_libs/bwa/ksort.h quast_libs/bwa/kstring.c quast_libs/bwa/kstring.h quast_libs/bwa/kstring.o quast_libs/bwa/ksw.c quast_libs/bwa/ksw.h quast_libs/bwa/ksw.o quast_libs/bwa/kthread.c quast_libs/bwa/kthread.o quast_libs/bwa/kvec.h quast_libs/bwa/libbwa.a quast_libs/bwa/main.c quast_libs/bwa/main.o quast_libs/bwa/malloc_wrap.c quast_libs/bwa/malloc_wrap.h quast_libs/bwa/malloc_wrap.o quast_libs/bwa/maxk.c quast_libs/bwa/maxk.o quast_libs/bwa/pemerge.c quast_libs/bwa/pemerge.o quast_libs/bwa/qualfa2fq.pl quast_libs/bwa/rle.c quast_libs/bwa/rle.h quast_libs/bwa/rle.o quast_libs/bwa/rope.c quast_libs/bwa/rope.h quast_libs/bwa/rope.o quast_libs/bwa/utils.c quast_libs/bwa/utils.h quast_libs/bwa/utils.o quast_libs/bwa/xa2multi.pl quast_libs/bwa/bwakit/README.md quast_libs/bwa/bwakit/bwa-postalt.js quast_libs/bwa/bwakit/run-HLA quast_libs/bwa/bwakit/run-bwamem quast_libs/bwa/bwakit/run-gen-ref quast_libs/bwa/bwakit/typeHLA-selctg.js quast_libs/bwa/bwakit/typeHLA.js quast_libs/bwa/bwakit/typeHLA.sh quast_libs/ca_utils/__init__.py quast_libs/ca_utils/align_contigs.py quast_libs/ca_utils/analyze_contigs.py quast_libs/ca_utils/analyze_coverage.py quast_libs/ca_utils/analyze_misassemblies.py quast_libs/ca_utils/best_set_selection.py quast_libs/ca_utils/misc.py quast_libs/ca_utils/save_results.py quast_libs/gage/GetFastaStats.java quast_libs/gage/SizeFasta.java quast_libs/gage/Utils.java quast_libs/gage/colsum.pl quast_libs/gage/getCorrectnessStats.sh quast_libs/gage/getMummerStats.sh quast_libs/genemark/MetaGeneMark_v1.mod quast_libs/genemark-es/lib/LineFit.pm quast_libs/genemark-es/lib/ReadBackwards.pm quast_libs/genemark-es/lib/YAML.pm quast_libs/genemark-es/lib/Class/Data/Inheritable.pm quast_libs/genemark-es/lib/Devel/StackTrace.pm quast_libs/genemark-es/lib/Devel/StackTrace/Frame.pm quast_libs/genemark-es/lib/Exception/Class.pm quast_libs/genemark-es/lib/Exception/Class/Base.pm quast_libs/genemark-es/lib/Hash/Merge.pm quast_libs/genemark-es/lib/Logger/Simple.pm quast_libs/genemark-es/lib/Object/InsideOut.pm quast_libs/genemark-es/lib/Object/InsideOut.pod quast_libs/genemark-es/lib/Object/InsideOut/Autoload.pm quast_libs/genemark-es/lib/Object/InsideOut/Chained.pm quast_libs/genemark-es/lib/Object/InsideOut/Cumulative.pm quast_libs/genemark-es/lib/Object/InsideOut/Dump.pm quast_libs/genemark-es/lib/Object/InsideOut/Dynamic.pm quast_libs/genemark-es/lib/Object/InsideOut/Exception.pm quast_libs/genemark-es/lib/Object/InsideOut/Foreign.pm quast_libs/genemark-es/lib/Object/InsideOut/Metadata.pm quast_libs/genemark-es/lib/Object/InsideOut/Overload.pm quast_libs/genemark-es/lib/Object/InsideOut/Secure.pm quast_libs/genemark-es/lib/Object/InsideOut/Universal.pm quast_libs/genemark-es/lib/Object/InsideOut/Util.pm quast_libs/genemark-es/lib/Object/InsideOut/attributes.pm quast_libs/genemark-es/lib/Object/InsideOut/lvalue.pm quast_libs/genemark-es/lib/Parallel/ForkManager.pm quast_libs/genemark-es/lib/YAML/Any.pm quast_libs/genemark-es/lib/YAML/Dumper.pm quast_libs/genemark-es/lib/YAML/Error.pm quast_libs/genemark-es/lib/YAML/Loader.pm quast_libs/genemark-es/lib/YAML/Marshall.pm quast_libs/genemark-es/lib/YAML/Mo.pm quast_libs/genemark-es/lib/YAML/Node.pm quast_libs/genemark-es/lib/YAML/Tag.pm quast_libs/genemark-es/lib/YAML/Types.pm quast_libs/genemark-es/lib/YAML/Dumper/Base.pm quast_libs/genemark-es/lib/YAML/Loader/Base.pm quast_libs/genemark-es/linux_32/Gibbs3 quast_libs/genemark-es/linux_32/LICENSE quast_libs/genemark-es/linux_32/README.GeneMark-ET quast_libs/genemark-es/linux_32/bet_to_gff.pl quast_libs/genemark-es/linux_32/bp_seq_select.pl quast_libs/genemark-es/linux_32/build_mod.pl quast_libs/genemark-es/linux_32/gc_distr.pl quast_libs/genemark-es/linux_32/get_sequence_from_GTF.pl quast_libs/genemark-es/linux_32/gibbs-3.1.tar.gz quast_libs/genemark-es/linux_32/gmes.cfg quast_libs/genemark-es/linux_32/gmes_petap.pl quast_libs/genemark-es/linux_32/gmhmme3 quast_libs/genemark-es/linux_32/histogram.pl quast_libs/genemark-es/linux_32/hmm_to_gtf.pl quast_libs/genemark-es/linux_32/make_nt_freq_mat.pl quast_libs/genemark-es/linux_32/parse_ET.pl quast_libs/genemark-es/linux_32/parse_by_introns.pl quast_libs/genemark-es/linux_32/parse_gibbs.pl quast_libs/genemark-es/linux_32/parse_set.pl quast_libs/genemark-es/linux_32/predict_genes.pl quast_libs/genemark-es/linux_32/prior.bp quast_libs/genemark-es/linux_32/probuild quast_libs/genemark-es/linux_32/reformat_fasta.pl quast_libs/genemark-es/linux_32/reformat_gff.pl quast_libs/genemark-es/linux_32/rescale_gff.pl quast_libs/genemark-es/linux_32/rnaseq_introns_to_gff.pl quast_libs/genemark-es/linux_32/run_hmm_pbs.pl quast_libs/genemark-es/linux_32/scan_for_bp.pl quast_libs/genemark-es/linux_32/verify_evidence_gmhmm.pl quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_32.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_33.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_34.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_35.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_36.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_37.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_38.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_39.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_40.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_41.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_42.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_43.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_44.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_45.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_46.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_47.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_48.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_49.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_50.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_51.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_52.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_53.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_54.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_55.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_56.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_57.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_58.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_59.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_60.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_61.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_62.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_63.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_64.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_65.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_66.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_67.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_68.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_69.mod quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_70.mod quast_libs/genemark-es/linux_32/lib/LineFit.pm quast_libs/genemark-es/linux_32/lib/ReadBackwards.pm quast_libs/genemark-es/linux_64/Gibbs3 quast_libs/genemark-es/linux_64/INSTALL quast_libs/genemark-es/linux_64/LICENSE quast_libs/genemark-es/linux_64/README.GeneMark-ES-suite quast_libs/genemark-es/linux_64/bet_to_gff.pl quast_libs/genemark-es/linux_64/bp_seq_select.pl quast_libs/genemark-es/linux_64/build_mod.pl quast_libs/genemark-es/linux_64/gc_distr.pl quast_libs/genemark-es/linux_64/get_sequence_from_GTF.pl quast_libs/genemark-es/linux_64/gibbs-3.1.tar.gz quast_libs/genemark-es/linux_64/gmes.cfg quast_libs/genemark-es/linux_64/gmes_petap.pl quast_libs/genemark-es/linux_64/gmhmme3 quast_libs/genemark-es/linux_64/histogram.pl quast_libs/genemark-es/linux_64/hmm_to_gtf.pl quast_libs/genemark-es/linux_64/make_nt_freq_mat.pl quast_libs/genemark-es/linux_64/parse_ET.pl quast_libs/genemark-es/linux_64/parse_by_introns.pl quast_libs/genemark-es/linux_64/parse_gibbs.pl quast_libs/genemark-es/linux_64/parse_set.pl quast_libs/genemark-es/linux_64/predict_genes.pl quast_libs/genemark-es/linux_64/prior.bp quast_libs/genemark-es/linux_64/probuild quast_libs/genemark-es/linux_64/reformat_fasta.pl quast_libs/genemark-es/linux_64/reformat_gff.pl quast_libs/genemark-es/linux_64/rescale_gff.pl quast_libs/genemark-es/linux_64/rnaseq_introns_to_gff.pl quast_libs/genemark-es/linux_64/run_hmm_pbs.pl quast_libs/genemark-es/linux_64/scan_for_bp.pl quast_libs/genemark-es/linux_64/star_to_gff.pl quast_libs/genemark-es/linux_64/verify_evidence_gmhmm.pl quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_32.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_33.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_34.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_35.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_36.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_37.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_38.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_39.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_40.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_41.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_42.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_43.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_44.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_45.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_46.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_47.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_48.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_49.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_50.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_51.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_52.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_53.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_54.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_55.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_56.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_57.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_58.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_59.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_60.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_61.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_62.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_63.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_64.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_65.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_66.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_67.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_68.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_69.mod quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_70.mod quast_libs/genemark-es/linux_64/lib/LineFit.pm quast_libs/genemark-es/linux_64/lib/ReadBackwards.pm quast_libs/genemark-es/macosx/Gibbs3 quast_libs/genemark-es/macosx/LICENSE quast_libs/genemark-es/macosx/README.GeneMark-ET quast_libs/genemark-es/macosx/bet_to_gff.pl quast_libs/genemark-es/macosx/bp_seq_select.pl quast_libs/genemark-es/macosx/build_mod.pl quast_libs/genemark-es/macosx/gc_distr.pl quast_libs/genemark-es/macosx/get_sequence_from_GTF.pl quast_libs/genemark-es/macosx/gibbs-3.1.tar.gz quast_libs/genemark-es/macosx/gmes.cfg quast_libs/genemark-es/macosx/gmes_petap.pl quast_libs/genemark-es/macosx/gmhmme3 quast_libs/genemark-es/macosx/histogram.pl quast_libs/genemark-es/macosx/hmm_to_gtf.pl quast_libs/genemark-es/macosx/make_nt_freq_mat.pl quast_libs/genemark-es/macosx/parse_ET.pl quast_libs/genemark-es/macosx/parse_by_introns.pl quast_libs/genemark-es/macosx/parse_gibbs.pl quast_libs/genemark-es/macosx/parse_set.pl quast_libs/genemark-es/macosx/predict_genes.pl quast_libs/genemark-es/macosx/prior.bp quast_libs/genemark-es/macosx/probuild quast_libs/genemark-es/macosx/reformat_fasta.pl quast_libs/genemark-es/macosx/reformat_gff.pl quast_libs/genemark-es/macosx/rescale_gff.pl quast_libs/genemark-es/macosx/rnaseq_introns_to_gff.pl quast_libs/genemark-es/macosx/run_hmm_pbs.pl quast_libs/genemark-es/macosx/scan_for_bp.pl quast_libs/genemark-es/macosx/verify_evidence_gmhmm.pl quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_32.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_33.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_34.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_35.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_36.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_37.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_38.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_39.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_40.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_41.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_42.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_43.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_44.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_45.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_46.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_47.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_48.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_49.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_50.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_51.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_52.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_53.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_54.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_55.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_56.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_57.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_58.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_59.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_60.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_61.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_62.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_63.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_64.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_65.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_66.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_67.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_68.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_69.mod quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_70.mod quast_libs/genemark-es/macosx/lib/LineFit.pm quast_libs/genemark-es/macosx/lib/ReadBackwards.pm quast_libs/genemark/gm_keys/gm_key_32 quast_libs/genemark/gm_keys/gm_key_64 quast_libs/genemark/linux_32/Gibbs3 quast_libs/genemark/linux_32/INSTALL quast_libs/genemark/linux_32/LICENSE quast_libs/genemark/linux_32/README.GeneMarkSuite quast_libs/genemark/linux_32/README.MetaGeneMark quast_libs/genemark/linux_32/README.heuristic quast_libs/genemark/linux_32/gc quast_libs/genemark/linux_32/gibbs quast_libs/genemark/linux_32/gibbs-3.1.tar.gz quast_libs/genemark/linux_32/gibbs9_95.tar.gz quast_libs/genemark/linux_32/gm quast_libs/genemark/linux_32/gm.pl quast_libs/genemark/linux_32/gm_1.tbl quast_libs/genemark/linux_32/gm_25.tbl quast_libs/genemark/linux_32/gm_4.tbl quast_libs/genemark/linux_32/gmhmmp quast_libs/genemark/linux_32/gmhmmp.pl quast_libs/genemark/linux_32/gmhmmp_heuristic.pl quast_libs/genemark/linux_32/gmsn.pl quast_libs/genemark/linux_32/heu_1.mod quast_libs/genemark/linux_32/heu_11.mod quast_libs/genemark/linux_32/heu_4.mod quast_libs/genemark/linux_32/matinfo quast_libs/genemark/linux_32/mkmat quast_libs/genemark/linux_32/par_1.default quast_libs/genemark/linux_32/par_11.default quast_libs/genemark/linux_32/par_4.default quast_libs/genemark/linux_32/par_EST.default quast_libs/genemark/linux_32/probuild quast_libs/genemark/linux_32/ps_gm_overlay.pl quast_libs/genemark/linux_32/viewmat quast_libs/genemark/linux_32/heuristic_mod/heu_11_30.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_31.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_32.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_33.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_34.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_35.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_36.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_37.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_38.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_39.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_40.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_41.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_42.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_43.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_44.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_45.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_46.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_47.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_48.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_49.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_50.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_51.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_52.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_53.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_54.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_55.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_56.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_57.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_58.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_59.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_60.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_61.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_62.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_63.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_64.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_65.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_66.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_67.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_68.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_69.mod quast_libs/genemark/linux_32/heuristic_mod/heu_11_70.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_30.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_31.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_32.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_33.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_34.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_35.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_36.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_37.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_38.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_39.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_40.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_41.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_42.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_43.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_44.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_45.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_46.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_47.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_48.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_49.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_50.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_51.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_52.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_53.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_54.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_55.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_56.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_57.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_58.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_59.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_60.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_61.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_62.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_63.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_64.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_65.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_66.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_67.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_68.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_69.mod quast_libs/genemark/linux_32/heuristic_mod/heu_1_70.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_30.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_31.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_32.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_33.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_34.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_35.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_36.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_37.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_38.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_39.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_40.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_41.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_42.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_43.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_44.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_45.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_46.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_47.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_48.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_49.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_50.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_51.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_52.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_53.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_54.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_55.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_56.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_57.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_58.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_59.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_60.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_61.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_62.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_63.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_64.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_65.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_66.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_67.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_68.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_69.mod quast_libs/genemark/linux_32/heuristic_mod/heu_4_70.mod quast_libs/genemark/linux_64/Gibbs3 quast_libs/genemark/linux_64/INSTALL quast_libs/genemark/linux_64/LICENSE quast_libs/genemark/linux_64/README.GeneMarkSuite quast_libs/genemark/linux_64/README.MetaGeneMark quast_libs/genemark/linux_64/README.heuristic quast_libs/genemark/linux_64/gc quast_libs/genemark/linux_64/gibbs quast_libs/genemark/linux_64/gibbs-3.1.tar.gz quast_libs/genemark/linux_64/gibbs9_95.tar.gz quast_libs/genemark/linux_64/gm quast_libs/genemark/linux_64/gm.pl quast_libs/genemark/linux_64/gm_1.tbl quast_libs/genemark/linux_64/gm_25.tbl quast_libs/genemark/linux_64/gm_4.tbl quast_libs/genemark/linux_64/gmhmmp quast_libs/genemark/linux_64/gmhmmp.pl quast_libs/genemark/linux_64/gmhmmp_heuristic.pl quast_libs/genemark/linux_64/gmsn.pl quast_libs/genemark/linux_64/heu_1.mod quast_libs/genemark/linux_64/heu_11.mod quast_libs/genemark/linux_64/heu_4.mod quast_libs/genemark/linux_64/matinfo quast_libs/genemark/linux_64/mkmat quast_libs/genemark/linux_64/par_1.default quast_libs/genemark/linux_64/par_11.default quast_libs/genemark/linux_64/par_4.default quast_libs/genemark/linux_64/par_EST.default quast_libs/genemark/linux_64/probuild quast_libs/genemark/linux_64/ps_gm_overlay.pl quast_libs/genemark/linux_64/viewmat quast_libs/genemark/linux_64/heuristic_mod/heu_11_30.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_31.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_32.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_33.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_34.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_35.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_36.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_37.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_38.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_39.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_40.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_41.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_42.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_43.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_44.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_45.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_46.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_47.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_48.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_49.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_50.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_51.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_52.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_53.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_54.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_55.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_56.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_57.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_58.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_59.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_60.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_61.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_62.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_63.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_64.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_65.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_66.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_67.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_68.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_69.mod quast_libs/genemark/linux_64/heuristic_mod/heu_11_70.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_30.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_31.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_32.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_33.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_34.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_35.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_36.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_37.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_38.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_39.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_40.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_41.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_42.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_43.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_44.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_45.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_46.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_47.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_48.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_49.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_50.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_51.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_52.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_53.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_54.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_55.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_56.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_57.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_58.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_59.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_60.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_61.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_62.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_63.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_64.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_65.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_66.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_67.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_68.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_69.mod quast_libs/genemark/linux_64/heuristic_mod/heu_1_70.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_30.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_31.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_32.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_33.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_34.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_35.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_36.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_37.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_38.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_39.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_40.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_41.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_42.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_43.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_44.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_45.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_46.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_47.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_48.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_49.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_50.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_51.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_52.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_53.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_54.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_55.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_56.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_57.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_58.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_59.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_60.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_61.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_62.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_63.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_64.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_65.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_66.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_67.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_68.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_69.mod quast_libs/genemark/linux_64/heuristic_mod/heu_4_70.mod quast_libs/genemark/macosx/Gibbs3 quast_libs/genemark/macosx/INSTALL quast_libs/genemark/macosx/LICENSE quast_libs/genemark/macosx/README.GeneMarkSuite quast_libs/genemark/macosx/README.MetaGeneMark quast_libs/genemark/macosx/README.heuristic quast_libs/genemark/macosx/gc quast_libs/genemark/macosx/gibbs quast_libs/genemark/macosx/gibbs-3.1.tar.gz quast_libs/genemark/macosx/gibbs9_95.tar.gz quast_libs/genemark/macosx/gm quast_libs/genemark/macosx/gm.pl quast_libs/genemark/macosx/gm_1.tbl quast_libs/genemark/macosx/gm_25.tbl quast_libs/genemark/macosx/gm_4.tbl quast_libs/genemark/macosx/gmhmmp quast_libs/genemark/macosx/gmhmmp.pl quast_libs/genemark/macosx/gmhmmp_heuristic.pl quast_libs/genemark/macosx/gmsn.pl quast_libs/genemark/macosx/heu_1.mod quast_libs/genemark/macosx/heu_11.mod quast_libs/genemark/macosx/heu_4.mod quast_libs/genemark/macosx/matinfo quast_libs/genemark/macosx/mkmat quast_libs/genemark/macosx/par_1.default quast_libs/genemark/macosx/par_11.default quast_libs/genemark/macosx/par_4.default quast_libs/genemark/macosx/par_EST.default quast_libs/genemark/macosx/probuild quast_libs/genemark/macosx/ps_gm_overlay.pl quast_libs/genemark/macosx/viewmat quast_libs/genemark/macosx/heuristic_mod/heu_11_30.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_31.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_32.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_33.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_34.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_35.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_36.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_37.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_38.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_39.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_40.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_41.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_42.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_43.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_44.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_45.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_46.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_47.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_48.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_49.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_50.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_51.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_52.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_53.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_54.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_55.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_56.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_57.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_58.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_59.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_60.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_61.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_62.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_63.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_64.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_65.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_66.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_67.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_68.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_69.mod quast_libs/genemark/macosx/heuristic_mod/heu_11_70.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_30.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_31.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_32.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_33.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_34.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_35.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_36.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_37.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_38.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_39.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_40.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_41.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_42.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_43.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_44.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_45.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_46.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_47.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_48.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_49.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_50.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_51.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_52.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_53.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_54.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_55.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_56.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_57.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_58.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_59.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_60.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_61.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_62.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_63.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_64.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_65.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_66.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_67.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_68.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_69.mod quast_libs/genemark/macosx/heuristic_mod/heu_1_70.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_30.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_31.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_32.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_33.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_34.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_35.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_36.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_37.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_38.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_39.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_40.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_41.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_42.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_43.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_44.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_45.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_46.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_47.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_48.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_49.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_50.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_51.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_52.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_53.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_54.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_55.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_56.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_57.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_58.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_59.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_60.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_61.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_62.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_63.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_64.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_65.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_66.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_67.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_68.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_69.mod quast_libs/genemark/macosx/heuristic_mod/heu_4_70.mod quast_libs/glimmer/COPYRIGHT quast_libs/glimmer/LICENSE quast_libs/glimmer/README.first quast_libs/glimmer/glimmerhmm quast_libs/glimmer/version_update quast_libs/glimmer/src/context.h quast_libs/glimmer/src/delcher.h quast_libs/glimmer/src/gene.h quast_libs/glimmer/src/glimmerhmm.c quast_libs/glimmer/src/glimmerhmm.o quast_libs/glimmer/src/graph.c quast_libs/glimmer/src/graph.h quast_libs/glimmer/src/graph.o quast_libs/glimmer/src/icm.h quast_libs/glimmer/src/makefile quast_libs/glimmer/src/oc1.h quast_libs/glimmer/src/sites.c quast_libs/glimmer/src/sites.h quast_libs/glimmer/src/sites.o quast_libs/glimmer/src/strarray.h quast_libs/glimmer/src/tree_util_prob.c quast_libs/glimmer/src/tree_util_prob.o quast_libs/glimmer/src/util.c quast_libs/glimmer/src/util.o quast_libs/glimmer/trained/arabidopsis/acc.dt quast_libs/glimmer/trained/arabidopsis/acc1.mar quast_libs/glimmer/trained/arabidopsis/acc2 quast_libs/glimmer/trained/arabidopsis/acc4 quast_libs/glimmer/trained/arabidopsis/acc5 quast_libs/glimmer/trained/arabidopsis/acc6 quast_libs/glimmer/trained/arabidopsis/all.hexfreq quast_libs/glimmer/trained/arabidopsis/atg.dt quast_libs/glimmer/trained/arabidopsis/atg.markov quast_libs/glimmer/trained/arabidopsis/coding_0_100.model quast_libs/glimmer/trained/arabidopsis/config.file quast_libs/glimmer/trained/arabidopsis/don.dt quast_libs/glimmer/trained/arabidopsis/don1.mar quast_libs/glimmer/trained/arabidopsis/don2 quast_libs/glimmer/trained/arabidopsis/don4 quast_libs/glimmer/trained/arabidopsis/don5 quast_libs/glimmer/trained/arabidopsis/don6 quast_libs/glimmer/trained/arabidopsis/exon.distr quast_libs/glimmer/trained/arabidopsis/exon.hexfreq quast_libs/glimmer/trained/arabidopsis/exonno.distr quast_libs/glimmer/trained/arabidopsis/exons.dat quast_libs/glimmer/trained/arabidopsis/false.acc quast_libs/glimmer/trained/arabidopsis/false.atg quast_libs/glimmer/trained/arabidopsis/false.don quast_libs/glimmer/trained/arabidopsis/false.stop quast_libs/glimmer/trained/arabidopsis/genelist quast_libs/glimmer/trained/arabidopsis/noncoding_0_100.model quast_libs/glimmer/trained/arabidopsis/outex quast_libs/glimmer/trained/arabidopsis/outin quast_libs/glimmer/trained/arabidopsis/score_ex.acc quast_libs/glimmer/trained/arabidopsis/score_ex.don quast_libs/glimmer/trained/arabidopsis/score_in.acc quast_libs/glimmer/trained/arabidopsis/score_in.don quast_libs/glimmer/trained/arabidopsis/seqs quast_libs/glimmer/trained/arabidopsis/stop.dt quast_libs/glimmer/trained/arabidopsis/stop.markov quast_libs/glimmer/trained/arabidopsis/train_0_100.cfg quast_libs/gnuplot/BUGS quast_libs/gnuplot/ChangeLog quast_libs/gnuplot/CodeStyle quast_libs/gnuplot/Copyright quast_libs/gnuplot/FAQ.pdf quast_libs/gnuplot/GNUmakefile quast_libs/gnuplot/INSTALL quast_libs/gnuplot/INSTALL.gnu quast_libs/gnuplot/Makefile quast_libs/gnuplot/Makefile.am quast_libs/gnuplot/Makefile.in quast_libs/gnuplot/Makefile.maint quast_libs/gnuplot/NEWS quast_libs/gnuplot/PATCHLEVEL quast_libs/gnuplot/PGPKEYS quast_libs/gnuplot/PORTING quast_libs/gnuplot/README quast_libs/gnuplot/RELEASE_NOTES quast_libs/gnuplot/TODO quast_libs/gnuplot/VERSION quast_libs/gnuplot/aclocal.m4 quast_libs/gnuplot/compile quast_libs/gnuplot/config.h quast_libs/gnuplot/config.hin quast_libs/gnuplot/config.log quast_libs/gnuplot/config.status quast_libs/gnuplot/configure quast_libs/gnuplot/configure.in quast_libs/gnuplot/configure.vms quast_libs/gnuplot/depcomp quast_libs/gnuplot/install-sh quast_libs/gnuplot/missing quast_libs/gnuplot/mkinstalldirs quast_libs/gnuplot/stamp-h quast_libs/gnuplot/stamp-h1 quast_libs/gnuplot/config/Makefile quast_libs/gnuplot/config/Makefile.am quast_libs/gnuplot/config/Makefile.am.in quast_libs/gnuplot/config/Makefile.in quast_libs/gnuplot/config/README quast_libs/gnuplot/config/buildvms.com quast_libs/gnuplot/config/config.cyg quast_libs/gnuplot/config/config.dj2 quast_libs/gnuplot/config/config.mgw quast_libs/gnuplot/config/config.nt quast_libs/gnuplot/config/config.os2 quast_libs/gnuplot/config/config.oww quast_libs/gnuplot/config/config.wc quast_libs/gnuplot/config/djconfig.sh quast_libs/gnuplot/config/make_vms.com quast_libs/gnuplot/config/makefile.cyg quast_libs/gnuplot/config/makefile.dj2 quast_libs/gnuplot/config/makefile.emx quast_libs/gnuplot/config/makefile.g quast_libs/gnuplot/config/makefile.os2 quast_libs/gnuplot/config/makefile.vms quast_libs/gnuplot/config/makefile.wc quast_libs/gnuplot/config/MacOSX/ReadMe.rtf quast_libs/gnuplot/config/MacOSX/createdist.sh quast_libs/gnuplot/config/MacOSX/gnuplot.packproj quast_libs/gnuplot/config/MacOSX/PkgResources/InstallationCheck quast_libs/gnuplot/config/MacOSX/PkgResources/License.rtf quast_libs/gnuplot/config/MacOSX/PkgResources/postinstall quast_libs/gnuplot/config/MacOSX/PkgResources/English.lproj/InstallationCheck.strings quast_libs/gnuplot/config/cygwin/Makefile quast_libs/gnuplot/config/mingw/Makefile quast_libs/gnuplot/config/msvc/Makefile quast_libs/gnuplot/config/watcom/Makefile quast_libs/gnuplot/config/watcom/config.h quast_libs/gnuplot/m4/Makefile quast_libs/gnuplot/m4/Makefile.am quast_libs/gnuplot/m4/Makefile.am.in quast_libs/gnuplot/m4/Makefile.in quast_libs/gnuplot/m4/README quast_libs/gnuplot/m4/alpha.m4 quast_libs/gnuplot/m4/apple.m4 quast_libs/gnuplot/m4/beos.m4 quast_libs/gnuplot/m4/msdos.m4 quast_libs/gnuplot/m4/next.m4 quast_libs/gnuplot/m4/pkg.m4 quast_libs/gnuplot/man/Makefile quast_libs/gnuplot/man/Makefile.am quast_libs/gnuplot/man/Makefile.in quast_libs/gnuplot/man/gnuplot-ja.1 quast_libs/gnuplot/man/gnuplot.1 quast_libs/gnuplot/pm3d/README quast_libs/gnuplot/pm3d/contrib/README quast_libs/gnuplot/pm3d/contrib/colorpts-demo.gp quast_libs/gnuplot/pm3d/contrib/colorpts.awk quast_libs/gnuplot/pm3d/contrib/pm3dCompress.awk quast_libs/gnuplot/pm3d/contrib/pm3dConvertToImage.awk quast_libs/gnuplot/pm3d/contrib/pts.dat quast_libs/gnuplot/share/Gnuplot quast_libs/gnuplot/share/Gnuplot.app-defaults quast_libs/gnuplot/share/Makefile quast_libs/gnuplot/share/Makefile.am quast_libs/gnuplot/share/Makefile.in quast_libs/gnuplot/share/colors_default.gp quast_libs/gnuplot/share/colors_mono.gp quast_libs/gnuplot/share/colors_podo.gp quast_libs/gnuplot/share/gnuplotrc quast_libs/gnuplot/share/LaTeX/Makefile quast_libs/gnuplot/share/LaTeX/Makefile.am quast_libs/gnuplot/share/LaTeX/Makefile.in quast_libs/gnuplot/share/LaTeX/README quast_libs/gnuplot/share/LaTeX/gnuplot-lua-tikz-common.tex quast_libs/gnuplot/share/LaTeX/gnuplot-lua-tikz.sty quast_libs/gnuplot/share/LaTeX/gnuplot-lua-tikz.tex quast_libs/gnuplot/share/LaTeX/gnuplot.cfg quast_libs/gnuplot/share/LaTeX/t-gnuplot-lua-tikz.tex quast_libs/gnuplot/src/GNUmakefile quast_libs/gnuplot/src/Makefile quast_libs/gnuplot/src/Makefile.am quast_libs/gnuplot/src/Makefile.in quast_libs/gnuplot/src/Makefile.maint quast_libs/gnuplot/src/alloc.c quast_libs/gnuplot/src/alloc.h quast_libs/gnuplot/src/alloc.o quast_libs/gnuplot/src/axis.c quast_libs/gnuplot/src/axis.h quast_libs/gnuplot/src/axis.o quast_libs/gnuplot/src/bf_test quast_libs/gnuplot/src/bf_test.c quast_libs/gnuplot/src/bf_test.o quast_libs/gnuplot/src/bitmap.c quast_libs/gnuplot/src/bitmap.h quast_libs/gnuplot/src/boundary.c quast_libs/gnuplot/src/boundary.h quast_libs/gnuplot/src/boundary.o quast_libs/gnuplot/src/breaders.c quast_libs/gnuplot/src/breaders.h quast_libs/gnuplot/src/breaders.o quast_libs/gnuplot/src/color.c quast_libs/gnuplot/src/color.h quast_libs/gnuplot/src/color.o quast_libs/gnuplot/src/command.c quast_libs/gnuplot/src/command.h quast_libs/gnuplot/src/command.o quast_libs/gnuplot/src/contour.c quast_libs/gnuplot/src/contour.h quast_libs/gnuplot/src/contour.o quast_libs/gnuplot/src/datablock.c quast_libs/gnuplot/src/datablock.h quast_libs/gnuplot/src/datablock.o quast_libs/gnuplot/src/datafile.c quast_libs/gnuplot/src/datafile.h quast_libs/gnuplot/src/datafile.o quast_libs/gnuplot/src/dynarray.c quast_libs/gnuplot/src/dynarray.h quast_libs/gnuplot/src/dynarray.o quast_libs/gnuplot/src/eval.c quast_libs/gnuplot/src/eval.h quast_libs/gnuplot/src/eval.o quast_libs/gnuplot/src/external.c quast_libs/gnuplot/src/external.h quast_libs/gnuplot/src/external.o quast_libs/gnuplot/src/fit.c quast_libs/gnuplot/src/fit.h quast_libs/gnuplot/src/fit.o quast_libs/gnuplot/src/gadgets.c quast_libs/gnuplot/src/gadgets.h quast_libs/gnuplot/src/gadgets.o quast_libs/gnuplot/src/genopt.com quast_libs/gnuplot/src/getcolor.c quast_libs/gnuplot/src/getcolor.h quast_libs/gnuplot/src/getcolor.o quast_libs/gnuplot/src/gnuplot quast_libs/gnuplot/src/gnuplot.opt quast_libs/gnuplot/src/gnuplot_x11 quast_libs/gnuplot/src/gnuplot_x11-getcolor.o quast_libs/gnuplot/src/gnuplot_x11-gpexecute.o quast_libs/gnuplot/src/gnuplot_x11-gplt_x11.o quast_libs/gnuplot/src/gnuplot_x11-version.o quast_libs/gnuplot/src/gp_hist.h quast_libs/gnuplot/src/gp_time.h quast_libs/gnuplot/src/gp_types.h quast_libs/gnuplot/src/gpexecute.c quast_libs/gnuplot/src/gpexecute.h quast_libs/gnuplot/src/gplt_x11.c quast_libs/gnuplot/src/gplt_x11.h quast_libs/gnuplot/src/graph3d.c quast_libs/gnuplot/src/graph3d.h quast_libs/gnuplot/src/graph3d.o quast_libs/gnuplot/src/graphics.c quast_libs/gnuplot/src/graphics.h quast_libs/gnuplot/src/graphics.o quast_libs/gnuplot/src/help.c quast_libs/gnuplot/src/help.h quast_libs/gnuplot/src/help.o quast_libs/gnuplot/src/hidden3d.c quast_libs/gnuplot/src/hidden3d.h quast_libs/gnuplot/src/hidden3d.o quast_libs/gnuplot/src/history.c quast_libs/gnuplot/src/history.o quast_libs/gnuplot/src/internal.c quast_libs/gnuplot/src/internal.h quast_libs/gnuplot/src/internal.o quast_libs/gnuplot/src/interpol.c quast_libs/gnuplot/src/interpol.h quast_libs/gnuplot/src/interpol.o quast_libs/gnuplot/src/libcerf.c quast_libs/gnuplot/src/libcerf.h quast_libs/gnuplot/src/libcerf.o quast_libs/gnuplot/src/linkopt.vms quast_libs/gnuplot/src/makefile.all quast_libs/gnuplot/src/makefile.awc quast_libs/gnuplot/src/matrix.c quast_libs/gnuplot/src/matrix.h quast_libs/gnuplot/src/matrix.o quast_libs/gnuplot/src/misc.c quast_libs/gnuplot/src/misc.h quast_libs/gnuplot/src/misc.o quast_libs/gnuplot/src/mouse.c quast_libs/gnuplot/src/mouse.h quast_libs/gnuplot/src/mouse.o quast_libs/gnuplot/src/mousecmn.h quast_libs/gnuplot/src/multiplot.c quast_libs/gnuplot/src/multiplot.h quast_libs/gnuplot/src/multiplot.o quast_libs/gnuplot/src/national.h quast_libs/gnuplot/src/parse.c quast_libs/gnuplot/src/parse.h quast_libs/gnuplot/src/parse.o quast_libs/gnuplot/src/plot.c quast_libs/gnuplot/src/plot.h quast_libs/gnuplot/src/plot.o quast_libs/gnuplot/src/plot2d.c quast_libs/gnuplot/src/plot2d.h quast_libs/gnuplot/src/plot2d.o quast_libs/gnuplot/src/plot3d.c quast_libs/gnuplot/src/plot3d.h quast_libs/gnuplot/src/plot3d.o quast_libs/gnuplot/src/pm3d.c quast_libs/gnuplot/src/pm3d.h quast_libs/gnuplot/src/pm3d.o quast_libs/gnuplot/src/readline.c quast_libs/gnuplot/src/readline.h quast_libs/gnuplot/src/readline.o quast_libs/gnuplot/src/save.c quast_libs/gnuplot/src/save.h quast_libs/gnuplot/src/save.o quast_libs/gnuplot/src/scanner.c quast_libs/gnuplot/src/scanner.h quast_libs/gnuplot/src/scanner.o quast_libs/gnuplot/src/set.c quast_libs/gnuplot/src/set.o quast_libs/gnuplot/src/setshow.h quast_libs/gnuplot/src/show.c quast_libs/gnuplot/src/show.o quast_libs/gnuplot/src/specfun.c quast_libs/gnuplot/src/specfun.h quast_libs/gnuplot/src/specfun.o quast_libs/gnuplot/src/standard.c quast_libs/gnuplot/src/standard.h quast_libs/gnuplot/src/standard.o quast_libs/gnuplot/src/stats.c quast_libs/gnuplot/src/stats.h quast_libs/gnuplot/src/stats.o quast_libs/gnuplot/src/stdfn.c quast_libs/gnuplot/src/stdfn.h quast_libs/gnuplot/src/stdfn.o quast_libs/gnuplot/src/strftime.c quast_libs/gnuplot/src/syscfg.h quast_libs/gnuplot/src/tables.c quast_libs/gnuplot/src/tables.h quast_libs/gnuplot/src/tables.o quast_libs/gnuplot/src/tabulate.c quast_libs/gnuplot/src/tabulate.h quast_libs/gnuplot/src/tabulate.o quast_libs/gnuplot/src/template.h quast_libs/gnuplot/src/term.c quast_libs/gnuplot/src/term.h quast_libs/gnuplot/src/term.o quast_libs/gnuplot/src/term_api.h quast_libs/gnuplot/src/time.c quast_libs/gnuplot/src/time.o quast_libs/gnuplot/src/timestamp.h quast_libs/gnuplot/src/unset.c quast_libs/gnuplot/src/unset.o quast_libs/gnuplot/src/util.c quast_libs/gnuplot/src/util.h quast_libs/gnuplot/src/util.o quast_libs/gnuplot/src/util3d.c quast_libs/gnuplot/src/util3d.h quast_libs/gnuplot/src/util3d.o quast_libs/gnuplot/src/variable.c quast_libs/gnuplot/src/variable.h quast_libs/gnuplot/src/variable.o quast_libs/gnuplot/src/version.c quast_libs/gnuplot/src/version.h quast_libs/gnuplot/src/version.o quast_libs/gnuplot/src/vms.c quast_libs/gnuplot/src/x11.opt quast_libs/gnuplot/src/.deps/alloc.Po quast_libs/gnuplot/src/.deps/axis.Po quast_libs/gnuplot/src/.deps/bf_test.Po quast_libs/gnuplot/src/.deps/bitmap.Po quast_libs/gnuplot/src/.deps/boundary.Po quast_libs/gnuplot/src/.deps/breaders.Po quast_libs/gnuplot/src/.deps/color.Po quast_libs/gnuplot/src/.deps/command.Po quast_libs/gnuplot/src/.deps/contour.Po quast_libs/gnuplot/src/.deps/datablock.Po quast_libs/gnuplot/src/.deps/datafile.Po quast_libs/gnuplot/src/.deps/dynarray.Po quast_libs/gnuplot/src/.deps/eval.Po quast_libs/gnuplot/src/.deps/external.Po quast_libs/gnuplot/src/.deps/fit.Po quast_libs/gnuplot/src/.deps/gadgets.Po quast_libs/gnuplot/src/.deps/getcolor.Po quast_libs/gnuplot/src/.deps/gnuplot_x11-getcolor.Po quast_libs/gnuplot/src/.deps/gnuplot_x11-gpexecute.Po quast_libs/gnuplot/src/.deps/gnuplot_x11-gplt_x11.Po quast_libs/gnuplot/src/.deps/gnuplot_x11-version.Po quast_libs/gnuplot/src/.deps/graph3d.Po quast_libs/gnuplot/src/.deps/graphics.Po quast_libs/gnuplot/src/.deps/help.Po quast_libs/gnuplot/src/.deps/hidden3d.Po quast_libs/gnuplot/src/.deps/history.Po quast_libs/gnuplot/src/.deps/internal.Po quast_libs/gnuplot/src/.deps/interpol.Po quast_libs/gnuplot/src/.deps/libcerf.Po quast_libs/gnuplot/src/.deps/matrix.Po quast_libs/gnuplot/src/.deps/misc.Po quast_libs/gnuplot/src/.deps/mouse.Po quast_libs/gnuplot/src/.deps/multiplot.Po quast_libs/gnuplot/src/.deps/parse.Po quast_libs/gnuplot/src/.deps/plot.Po quast_libs/gnuplot/src/.deps/plot2d.Po quast_libs/gnuplot/src/.deps/plot3d.Po quast_libs/gnuplot/src/.deps/pm3d.Po quast_libs/gnuplot/src/.deps/readline.Po quast_libs/gnuplot/src/.deps/save.Po quast_libs/gnuplot/src/.deps/scanner.Po quast_libs/gnuplot/src/.deps/set.Po quast_libs/gnuplot/src/.deps/show.Po quast_libs/gnuplot/src/.deps/specfun.Po quast_libs/gnuplot/src/.deps/standard.Po quast_libs/gnuplot/src/.deps/stats.Po quast_libs/gnuplot/src/.deps/stdfn.Po quast_libs/gnuplot/src/.deps/strftime.Po quast_libs/gnuplot/src/.deps/tables.Po quast_libs/gnuplot/src/.deps/tabulate.Po quast_libs/gnuplot/src/.deps/term.Po quast_libs/gnuplot/src/.deps/time.Po quast_libs/gnuplot/src/.deps/unset.Po quast_libs/gnuplot/src/.deps/util.Po quast_libs/gnuplot/src/.deps/util3d.Po quast_libs/gnuplot/src/.deps/variable.Po quast_libs/gnuplot/src/.deps/version.Po quast_libs/gnuplot/src/.deps/vms.Po quast_libs/gnuplot/src/NeXT/Controller.h quast_libs/gnuplot/src/NeXT/Controller.m quast_libs/gnuplot/src/NeXT/GnuTerm.iconheader quast_libs/gnuplot/src/NeXT/GnuTerm.tiff quast_libs/gnuplot/src/NeXT/GnuTerm_main.m quast_libs/gnuplot/src/NeXT/GnuView.h quast_libs/gnuplot/src/NeXT/GnuView.m quast_libs/gnuplot/src/NeXT/Makefile quast_libs/gnuplot/src/NeXT/Makefile.postamble quast_libs/gnuplot/src/NeXT/Makefile.preamble quast_libs/gnuplot/src/NeXT/PB.gdbinit quast_libs/gnuplot/src/NeXT/PB.project quast_libs/gnuplot/src/NeXT/README.rtf quast_libs/gnuplot/src/NeXT/bigger.tiff quast_libs/gnuplot/src/NeXT/gnuviewController.h quast_libs/gnuplot/src/NeXT/gnuviewController.m quast_libs/gnuplot/src/NeXT/smaller.tiff quast_libs/gnuplot/src/NeXT/English.lproj/GnuTerm.nib/data.classes quast_libs/gnuplot/src/NeXT/English.lproj/GnuTerm.nib/data.nib quast_libs/gnuplot/src/NeXT/English.lproj/gnuview.nib/bigger.tiff quast_libs/gnuplot/src/NeXT/English.lproj/gnuview.nib/data.classes quast_libs/gnuplot/src/NeXT/English.lproj/gnuview.nib/data.nib quast_libs/gnuplot/src/NeXT/English.lproj/gnuview.nib/smaller.tiff quast_libs/gnuplot/src/OpenStep/Controller.h quast_libs/gnuplot/src/OpenStep/Controller.m quast_libs/gnuplot/src/OpenStep/GnuTerm.iconheader quast_libs/gnuplot/src/OpenStep/GnuTerm.tiff quast_libs/gnuplot/src/OpenStep/GnuTerm_main.m quast_libs/gnuplot/src/OpenStep/GnuView.h quast_libs/gnuplot/src/OpenStep/GnuView.m quast_libs/gnuplot/src/OpenStep/GnuViewController.h quast_libs/gnuplot/src/OpenStep/GnuViewController.m quast_libs/gnuplot/src/OpenStep/Makefile quast_libs/gnuplot/src/OpenStep/Makefile.postamble quast_libs/gnuplot/src/OpenStep/Makefile.preamble quast_libs/gnuplot/src/OpenStep/PB.project quast_libs/gnuplot/src/OpenStep/TODO quast_libs/gnuplot/src/OpenStep/English.lproj/GnuTerm.nib/classes.nib quast_libs/gnuplot/src/OpenStep/English.lproj/GnuTerm.nib/objects.nib quast_libs/gnuplot/src/OpenStep/English.lproj/gnuview.nib/data.classes quast_libs/gnuplot/src/OpenStep/English.lproj/gnuview.nib/objects.nib quast_libs/gnuplot/src/OpenStep/PBUserInfo/PBUserInfo_leigh.plist quast_libs/gnuplot/src/beos/GPApp.cpp quast_libs/gnuplot/src/beos/GPApp.h quast_libs/gnuplot/src/beos/GPBitmap.cpp quast_libs/gnuplot/src/beos/GPBitmap.h quast_libs/gnuplot/src/beos/GPView.cpp quast_libs/gnuplot/src/beos/GPView.h quast_libs/gnuplot/src/beos/GPWindow.cpp quast_libs/gnuplot/src/beos/GPWindow.h quast_libs/gnuplot/src/beos/Makefile quast_libs/gnuplot/src/beos/Makefile.in quast_libs/gnuplot/src/beos/XStringList.cpp quast_libs/gnuplot/src/beos/XStringList.h quast_libs/gnuplot/src/beos/constants.h quast_libs/gnuplot/src/os2/4allterm.cmd quast_libs/gnuplot/src/os2/dialogs.c quast_libs/gnuplot/src/os2/dialogs.h quast_libs/gnuplot/src/os2/gclient.c quast_libs/gnuplot/src/os2/gnuplot.ico quast_libs/gnuplot/src/os2/gnupmdrv.c quast_libs/gnuplot/src/os2/gnupmdrv.def quast_libs/gnuplot/src/os2/gnupmdrv.h quast_libs/gnuplot/src/os2/gnupmdrv.ipf quast_libs/gnuplot/src/os2/gnupmdrv.rc quast_libs/gnuplot/src/os2/pm_msgs.h quast_libs/gnuplot/src/os2/print.c quast_libs/gnuplot/src/os2/ptrcross.ptr quast_libs/gnuplot/src/os2/rotating.ptr quast_libs/gnuplot/src/os2/scaling.ptr quast_libs/gnuplot/src/qtterminal/Makefile quast_libs/gnuplot/src/qtterminal/Makefile.am quast_libs/gnuplot/src/qtterminal/Makefile.in quast_libs/gnuplot/src/qtterminal/QtGnuplot.pro quast_libs/gnuplot/src/qtterminal/QtGnuplotApplication.cpp quast_libs/gnuplot/src/qtterminal/QtGnuplotApplication.h quast_libs/gnuplot/src/qtterminal/QtGnuplotEvent.cpp quast_libs/gnuplot/src/qtterminal/QtGnuplotEvent.h quast_libs/gnuplot/src/qtterminal/QtGnuplotInstance.cpp quast_libs/gnuplot/src/qtterminal/QtGnuplotInstance.h quast_libs/gnuplot/src/qtterminal/QtGnuplotItems.cpp quast_libs/gnuplot/src/qtterminal/QtGnuplotItems.h quast_libs/gnuplot/src/qtterminal/QtGnuplotResource.qrc quast_libs/gnuplot/src/qtterminal/QtGnuplotScene.cpp quast_libs/gnuplot/src/qtterminal/QtGnuplotScene.h quast_libs/gnuplot/src/qtterminal/QtGnuplotSettings.ui quast_libs/gnuplot/src/qtterminal/QtGnuplotWidget.cpp quast_libs/gnuplot/src/qtterminal/QtGnuplotWidget.h quast_libs/gnuplot/src/qtterminal/QtGnuplotWindow.cpp quast_libs/gnuplot/src/qtterminal/QtGnuplotWindow.h quast_libs/gnuplot/src/qtterminal/README.Qt quast_libs/gnuplot/src/qtterminal/embed_example.cpp quast_libs/gnuplot/src/qtterminal/embed_example.h quast_libs/gnuplot/src/qtterminal/gnuplot_qt.cpp quast_libs/gnuplot/src/qtterminal/qt_conversion.cpp quast_libs/gnuplot/src/qtterminal/qt_term.cpp quast_libs/gnuplot/src/qtterminal/qt_term.h quast_libs/gnuplot/src/qtterminal/.deps/QtGnuplotApplication.Po quast_libs/gnuplot/src/qtterminal/.deps/QtGnuplotEvent.Po quast_libs/gnuplot/src/qtterminal/.deps/QtGnuplotItems.Po quast_libs/gnuplot/src/qtterminal/.deps/QtGnuplotScene.Po quast_libs/gnuplot/src/qtterminal/.deps/QtGnuplotWidget.Po quast_libs/gnuplot/src/qtterminal/.deps/QtGnuplotWindow.Po quast_libs/gnuplot/src/qtterminal/.deps/gnuplot_qt.Po quast_libs/gnuplot/src/qtterminal/.deps/moc_QtGnuplotApplication.Po quast_libs/gnuplot/src/qtterminal/.deps/moc_QtGnuplotEvent.Po quast_libs/gnuplot/src/qtterminal/.deps/moc_QtGnuplotScene.Po quast_libs/gnuplot/src/qtterminal/.deps/moc_QtGnuplotWidget.Po quast_libs/gnuplot/src/qtterminal/.deps/moc_QtGnuplotWindow.Po quast_libs/gnuplot/src/qtterminal/.deps/qrc_QtGnuplotResource.Po quast_libs/gnuplot/src/qtterminal/.deps/qt_term.Po quast_libs/gnuplot/src/qtterminal/images/application-pdf.png quast_libs/gnuplot/src/qtterminal/images/configure.png quast_libs/gnuplot/src/qtterminal/images/document-export.png quast_libs/gnuplot/src/qtterminal/images/document-print.png quast_libs/gnuplot/src/qtterminal/images/edit-paste.png quast_libs/gnuplot/src/qtterminal/images/grid.png quast_libs/gnuplot/src/qtterminal/images/icon32x32.xpm quast_libs/gnuplot/src/qtterminal/images/image-bmp.png quast_libs/gnuplot/src/qtterminal/images/image-x-eps.png quast_libs/gnuplot/src/qtterminal/images/view-refresh.png quast_libs/gnuplot/src/qtterminal/images/zoom-in.png quast_libs/gnuplot/src/qtterminal/images/zoom-original.png quast_libs/gnuplot/src/qtterminal/images/zoom-out.png quast_libs/gnuplot/src/qtterminal/po/qtgnuplot_fr.ts quast_libs/gnuplot/src/qtterminal/po/qtgnuplot_ja.ts quast_libs/gnuplot/src/win/README.win-ja quast_libs/gnuplot/src/win/grpicon.ico quast_libs/gnuplot/src/win/pgnuplot.c quast_libs/gnuplot/src/win/rotating.cur quast_libs/gnuplot/src/win/scaling.cur quast_libs/gnuplot/src/win/screenbuf.c quast_libs/gnuplot/src/win/screenbuf.h quast_libs/gnuplot/src/win/texticon.ico quast_libs/gnuplot/src/win/wcommon.h quast_libs/gnuplot/src/win/wgdiplus.cpp quast_libs/gnuplot/src/win/wgdiplus.h quast_libs/gnuplot/src/win/wgnuplib.c quast_libs/gnuplot/src/win/wgnuplib.h quast_libs/gnuplot/src/win/wgnuplib.rc quast_libs/gnuplot/src/win/wgnuplot-ja.mnu quast_libs/gnuplot/src/win/wgnuplot.exe.manifest quast_libs/gnuplot/src/win/wgnuplot.exe.manifest64 quast_libs/gnuplot/src/win/wgnuplot.mnu quast_libs/gnuplot/src/win/wgnuplot.rc quast_libs/gnuplot/src/win/wgraph.c quast_libs/gnuplot/src/win/winmain.c quast_libs/gnuplot/src/win/winmain.h quast_libs/gnuplot/src/win/wmenu.c quast_libs/gnuplot/src/win/wpause.c quast_libs/gnuplot/src/win/wprinter.c quast_libs/gnuplot/src/win/wredirect.cpp quast_libs/gnuplot/src/win/wresourc.h quast_libs/gnuplot/src/win/wtext.c quast_libs/gnuplot/src/win/wtext.h quast_libs/gnuplot/src/wxterminal/Makefile quast_libs/gnuplot/src/wxterminal/Makefile.am quast_libs/gnuplot/src/wxterminal/Makefile.in quast_libs/gnuplot/src/wxterminal/gp_cairo.c quast_libs/gnuplot/src/wxterminal/gp_cairo.h quast_libs/gnuplot/src/wxterminal/gp_cairo_helpers.c quast_libs/gnuplot/src/wxterminal/gp_cairo_helpers.h quast_libs/gnuplot/src/wxterminal/wxt_gui.cpp quast_libs/gnuplot/src/wxterminal/wxt_gui.h quast_libs/gnuplot/src/wxterminal/wxt_term.h quast_libs/gnuplot/src/wxterminal/.deps/gp_cairo.Po quast_libs/gnuplot/src/wxterminal/.deps/gp_cairo_helpers.Po quast_libs/gnuplot/src/wxterminal/.deps/wxt_gui.Po quast_libs/gnuplot/src/wxterminal/bitmaps/png/README.embedding quast_libs/gnuplot/src/wxterminal/bitmaps/png/autoscale.png quast_libs/gnuplot/src/wxterminal/bitmaps/png/autoscale_png.h quast_libs/gnuplot/src/wxterminal/bitmaps/png/clipboard.png quast_libs/gnuplot/src/wxterminal/bitmaps/png/clipboard_png.h quast_libs/gnuplot/src/wxterminal/bitmaps/png/config.png quast_libs/gnuplot/src/wxterminal/bitmaps/png/config_png.h quast_libs/gnuplot/src/wxterminal/bitmaps/png/grid.png quast_libs/gnuplot/src/wxterminal/bitmaps/png/grid_png.h quast_libs/gnuplot/src/wxterminal/bitmaps/png/help.png quast_libs/gnuplot/src/wxterminal/bitmaps/png/help_png.h quast_libs/gnuplot/src/wxterminal/bitmaps/png/nextzoom.png quast_libs/gnuplot/src/wxterminal/bitmaps/png/nextzoom_png.h quast_libs/gnuplot/src/wxterminal/bitmaps/png/previouszoom.png quast_libs/gnuplot/src/wxterminal/bitmaps/png/previouszoom_png.h quast_libs/gnuplot/src/wxterminal/bitmaps/png/replot.png quast_libs/gnuplot/src/wxterminal/bitmaps/png/replot_png.h quast_libs/gnuplot/src/wxterminal/bitmaps/xpm/cross.xpm quast_libs/gnuplot/src/wxterminal/bitmaps/xpm/icon16x16.xpm quast_libs/gnuplot/src/wxterminal/bitmaps/xpm/icon32x32.xpm quast_libs/gnuplot/src/wxterminal/bitmaps/xpm/icon64x64.xpm quast_libs/gnuplot/src/wxterminal/bitmaps/xpm/notfound.xpm quast_libs/gnuplot/src/wxterminal/bitmaps/xpm/right.xpm quast_libs/gnuplot/src/wxterminal/bitmaps/xpm/rotate.xpm quast_libs/gnuplot/src/wxterminal/bitmaps/xpm/size.xpm quast_libs/gnuplot/term/Makefile quast_libs/gnuplot/term/Makefile.am quast_libs/gnuplot/term/Makefile.am.in quast_libs/gnuplot/term/Makefile.in quast_libs/gnuplot/term/README quast_libs/gnuplot/term/ai.trm quast_libs/gnuplot/term/aquaterm.trm quast_libs/gnuplot/term/be.trm quast_libs/gnuplot/term/caca.trm quast_libs/gnuplot/term/cairo.trm quast_libs/gnuplot/term/canvas.trm quast_libs/gnuplot/term/cgm.trm quast_libs/gnuplot/term/context.trm quast_libs/gnuplot/term/corel.trm quast_libs/gnuplot/term/debug.trm quast_libs/gnuplot/term/djsvga.trm quast_libs/gnuplot/term/driver.h quast_libs/gnuplot/term/dumb.trm quast_libs/gnuplot/term/dxf.trm quast_libs/gnuplot/term/dxy.trm quast_libs/gnuplot/term/eepic.trm quast_libs/gnuplot/term/emf.trm quast_libs/gnuplot/term/emxvga.trm quast_libs/gnuplot/term/epson.trm quast_libs/gnuplot/term/estimate.trm quast_libs/gnuplot/term/excl.trm quast_libs/gnuplot/term/fig.trm quast_libs/gnuplot/term/gd.trm quast_libs/gnuplot/term/ggi.trm quast_libs/gnuplot/term/gpic.trm quast_libs/gnuplot/term/grass.trm quast_libs/gnuplot/term/hp26.trm quast_libs/gnuplot/term/hp2648.trm quast_libs/gnuplot/term/hp500c.trm quast_libs/gnuplot/term/hpgl.trm quast_libs/gnuplot/term/hpljii.trm quast_libs/gnuplot/term/hppj.trm quast_libs/gnuplot/term/imagen.trm quast_libs/gnuplot/term/impcodes.h quast_libs/gnuplot/term/kyo.trm quast_libs/gnuplot/term/latex.trm quast_libs/gnuplot/term/linux.trm quast_libs/gnuplot/term/lua.trm quast_libs/gnuplot/term/metafont.trm quast_libs/gnuplot/term/metapost.trm quast_libs/gnuplot/term/mif.trm quast_libs/gnuplot/term/next.trm quast_libs/gnuplot/term/object.h quast_libs/gnuplot/term/openstep.trm quast_libs/gnuplot/term/pbm.trm quast_libs/gnuplot/term/pc.trm quast_libs/gnuplot/term/pdf.trm quast_libs/gnuplot/term/pm.trm quast_libs/gnuplot/term/post.h quast_libs/gnuplot/term/post.trm quast_libs/gnuplot/term/pslatex.trm quast_libs/gnuplot/term/pstricks.trm quast_libs/gnuplot/term/qms.trm quast_libs/gnuplot/term/qt.trm quast_libs/gnuplot/term/regis.trm quast_libs/gnuplot/term/sun.trm quast_libs/gnuplot/term/svg.trm quast_libs/gnuplot/term/t410x.trm quast_libs/gnuplot/term/tek.trm quast_libs/gnuplot/term/texdraw.trm quast_libs/gnuplot/term/tgif.trm quast_libs/gnuplot/term/tkcanvas.trm quast_libs/gnuplot/term/tpic.trm quast_libs/gnuplot/term/vgagl.trm quast_libs/gnuplot/term/vws.trm quast_libs/gnuplot/term/win.trm quast_libs/gnuplot/term/write_png_image.c quast_libs/gnuplot/term/wxt.trm quast_libs/gnuplot/term/x11.trm quast_libs/gnuplot/term/xlib.trm quast_libs/gnuplot/term/PostScript/8859-1.ps quast_libs/gnuplot/term/PostScript/8859-15.ps quast_libs/gnuplot/term/PostScript/8859-2.ps quast_libs/gnuplot/term/PostScript/8859-9.ps quast_libs/gnuplot/term/PostScript/README quast_libs/gnuplot/term/PostScript/aglfn.txt quast_libs/gnuplot/term/PostScript/cp1250.ps quast_libs/gnuplot/term/PostScript/cp1251.ps quast_libs/gnuplot/term/PostScript/cp1252.ps quast_libs/gnuplot/term/PostScript/cp437.ps quast_libs/gnuplot/term/PostScript/cp850.ps quast_libs/gnuplot/term/PostScript/cp852.ps quast_libs/gnuplot/term/PostScript/koi8r.ps quast_libs/gnuplot/term/PostScript/koi8u.ps quast_libs/gnuplot/term/PostScript/prologue.ps quast_libs/gnuplot/term/PostScript/prologues.h quast_libs/gnuplot/term/PostScript/ps_header.sh quast_libs/gnuplot/term/PostScript/unicode_big.map quast_libs/gnuplot/term/PostScript/unicode_maps.README quast_libs/gnuplot/term/PostScript/unicode_small.map quast_libs/gnuplot/term/PostScript/utf-8.ps quast_libs/gnuplot/term/js/README quast_libs/gnuplot/term/js/canvas_help.html quast_libs/gnuplot/term/js/canvasmath.js quast_libs/gnuplot/term/js/canvastext.js quast_libs/gnuplot/term/js/gnuplot_common.js quast_libs/gnuplot/term/js/gnuplot_dashedlines.js quast_libs/gnuplot/term/js/gnuplot_mouse.css quast_libs/gnuplot/term/js/gnuplot_mouse.js quast_libs/gnuplot/term/js/gnuplot_svg.js quast_libs/gnuplot/term/js/grid.png quast_libs/gnuplot/term/js/help.png quast_libs/gnuplot/term/js/nextzoom.png quast_libs/gnuplot/term/js/previouszoom.png quast_libs/gnuplot/term/js/return.png quast_libs/gnuplot/term/js/textzoom.png quast_libs/gnuplot/term/lua/NEWS quast_libs/gnuplot/term/lua/README quast_libs/gnuplot/term/lua/TODO quast_libs/gnuplot/term/lua/gnuplot-tikz.help quast_libs/gnuplot/term/lua/gnuplot-tikz.lua quast_libs/gnuplot/win/Copyright-ja.txt quast_libs/gnuplot/win/README-Windows-ja.txt quast_libs/gnuplot/win/README-Windows.txt quast_libs/gnuplot/win/gnuplot.iss quast_libs/gnuplot/win/modpath.iss quast_libs/html_saver/__init__.py quast_libs/html_saver/glossary.json quast_libs/html_saver/html_saver.py quast_libs/html_saver/icarus_menu_templ.html quast_libs/html_saver/json_saver.py quast_libs/html_saver/template.html quast_libs/html_saver/viewers_template.html quast_libs/html_saver/static/common.css quast_libs/html_saver/static/d3.js quast_libs/html_saver/static/dragtable.js quast_libs/html_saver/static/icarus.css quast_libs/html_saver/static/ie_html5.js quast_libs/html_saver/static/jquery-1.7.2.min.js quast_libs/html_saver/static/jquery-1.8.2.js quast_libs/html_saver/static/jquery-1.8.2.min.js quast_libs/html_saver/static/jquery-ui.js quast_libs/html_saver/static/jquery.css quast_libs/html_saver/static/report.css quast_libs/html_saver/static/bootstrap/bootstrap-tooltip-5px-lower.min.js quast_libs/html_saver/static/bootstrap/bootstrap-tooltip-vlad.js quast_libs/html_saver/static/bootstrap/bootstrap.css quast_libs/html_saver/static/bootstrap/bootstrap.min.css quast_libs/html_saver/static/bootstrap/bootstrap.min.js quast_libs/html_saver/static/flot/API.txt quast_libs/html_saver/static/flot/FAQ.txt quast_libs/html_saver/static/flot/LICENSE.txt quast_libs/html_saver/static/flot/Makefile quast_libs/html_saver/static/flot/NEWS.txt quast_libs/html_saver/static/flot/PLUGINS.txt quast_libs/html_saver/static/flot/README.txt quast_libs/html_saver/static/flot/excanvas.js quast_libs/html_saver/static/flot/excanvas.min.js quast_libs/html_saver/static/flot/jquery.colorhelpers.js quast_libs/html_saver/static/flot/jquery.colorhelpers.min.js quast_libs/html_saver/static/flot/jquery.flot.crosshair.js quast_libs/html_saver/static/flot/jquery.flot.crosshair.min.js quast_libs/html_saver/static/flot/jquery.flot.dashes.js quast_libs/html_saver/static/flot/jquery.flot.fillbetween.js quast_libs/html_saver/static/flot/jquery.flot.fillbetween.min.js quast_libs/html_saver/static/flot/jquery.flot.image.js quast_libs/html_saver/static/flot/jquery.flot.image.min.js quast_libs/html_saver/static/flot/jquery.flot.js quast_libs/html_saver/static/flot/jquery.flot.min.js quast_libs/html_saver/static/flot/jquery.flot.navigate.js quast_libs/html_saver/static/flot/jquery.flot.navigate.min.js quast_libs/html_saver/static/flot/jquery.flot.pie.js quast_libs/html_saver/static/flot/jquery.flot.pie.min.js quast_libs/html_saver/static/flot/jquery.flot.resize.js quast_libs/html_saver/static/flot/jquery.flot.resize.min.js quast_libs/html_saver/static/flot/jquery.flot.selection.js quast_libs/html_saver/static/flot/jquery.flot.selection.min.js quast_libs/html_saver/static/flot/jquery.flot.stack.js quast_libs/html_saver/static/flot/jquery.flot.stack.min.js quast_libs/html_saver/static/flot/jquery.flot.symbol.js quast_libs/html_saver/static/flot/jquery.flot.symbol.min.js quast_libs/html_saver/static/flot/jquery.flot.threshold.js quast_libs/html_saver/static/flot/jquery.flot.threshold.min.js quast_libs/html_saver/static/flot/jquery.flot.tickrotor.js quast_libs/html_saver/static/flot/jquery.js quast_libs/html_saver/static/flot/jquery.min.js quast_libs/html_saver/static/img/draggable.png quast_libs/html_saver/static/img/draggable_16p.png quast_libs/html_saver/static/img/favicon.ico quast_libs/html_saver/static/img/icon_plot.png quast_libs/html_saver/static/img/quast_logo.png quast_libs/html_saver/static/img/quast_logo_black.png quast_libs/html_saver/static/img/semi-transparent-10px.png quast_libs/html_saver/static/img/semi-transparent-10px.pxm quast_libs/html_saver/static/scripts/build_icarus.js quast_libs/html_saver/static/scripts/build_report.js quast_libs/html_saver/static/scripts/build_report_common.js quast_libs/html_saver/static/scripts/build_report_meta.js quast_libs/html_saver/static/scripts/build_total_report.js quast_libs/html_saver/static/scripts/build_total_report_common.js quast_libs/html_saver/static/scripts/build_total_report_meta.js quast_libs/html_saver/static/scripts/display_icarus.js quast_libs/html_saver/static/scripts/draw_cumulative_plot.js quast_libs/html_saver/static/scripts/draw_frc_plot.js quast_libs/html_saver/static/scripts/draw_gc_plot.js quast_libs/html_saver/static/scripts/draw_genes_plot.js quast_libs/html_saver/static/scripts/draw_meta_misassembl_plot.js quast_libs/html_saver/static/scripts/draw_metasummary_plot.js quast_libs/html_saver/static/scripts/draw_nx_plot.js quast_libs/html_saver/static/scripts/hsvToRgb.js quast_libs/html_saver/static/scripts/icarus_interface.js quast_libs/html_saver/static/scripts/icarus_utils.js quast_libs/html_saver/static/scripts/lighter_darker.js quast_libs/html_saver/static/scripts/utils.js quast_libs/kronatools/LICENSE.txt quast_libs/kronatools/img/favicon.ico quast_libs/kronatools/img/favicon.uri quast_libs/kronatools/img/hidden.png quast_libs/kronatools/img/hidden.uri quast_libs/kronatools/img/loading.gif quast_libs/kronatools/img/loading.uri quast_libs/kronatools/img/logo-small.png quast_libs/kronatools/img/logo-small.uri quast_libs/kronatools/lib/KronaTools.pm quast_libs/kronatools/scripts/ImportText.pl quast_libs/kronatools/src/krona-2.0.js quast_libs/ra_utils/__init__.py quast_libs/ra_utils/misc.py quast_libs/ra_utils/vcfToBedpe.py quast_libs/sambamba/sambamba_linux quast_libs/sambamba/sambamba_osx quast_libs/site_packages/__init__.py quast_libs/site_packages/_bz2.py quast_libs/site_packages/_compression.py quast_libs/site_packages/bz2.py quast_libs/site_packages/ordered_dict.py quast_libs/site_packages/joblib/__init__.py quast_libs/site_packages/joblib/disk.py quast_libs/site_packages/joblib/format_stack.py quast_libs/site_packages/joblib/func_inspect.py quast_libs/site_packages/joblib/hashing.py quast_libs/site_packages/joblib/logger.py quast_libs/site_packages/joblib/memory.py quast_libs/site_packages/joblib/my_exceptions.py quast_libs/site_packages/joblib/numpy_pickle.py quast_libs/site_packages/joblib/parallel.py quast_libs/site_packages/joblib/testing.py quast_libs/site_packages/joblib3/__init__.py quast_libs/site_packages/joblib3/_compat.py quast_libs/site_packages/joblib3/_memory_helpers.py quast_libs/site_packages/joblib3/_multiprocessing_helpers.py quast_libs/site_packages/joblib3/disk.py quast_libs/site_packages/joblib3/format_stack.py quast_libs/site_packages/joblib3/func_inspect.py quast_libs/site_packages/joblib3/hashing.py quast_libs/site_packages/joblib3/logger.py quast_libs/site_packages/joblib3/memory.py quast_libs/site_packages/joblib3/my_exceptions.py quast_libs/site_packages/joblib3/numpy_pickle.py quast_libs/site_packages/joblib3/parallel.py quast_libs/site_packages/joblib3/pool.py quast_libs/site_packages/joblib3/testing.py quast_libs/site_packages/jsontemplate/__init__.py quast_libs/site_packages/jsontemplate/jsontemplate.py quast_libs/site_packages/simplejson/__init__.py quast_libs/site_packages/simplejson/_speedups.so quast_libs/site_packages/simplejson/decoder.py quast_libs/site_packages/simplejson/encoder.py quast_libs/site_packages/simplejson/ordered_dict.py quast_libs/site_packages/simplejson/scanner.py quast_libs/site_packages/simplejson/tool.py test_data/contigs_1.fasta test_data/contigs_2.fasta test_data/genes.bed test_data/genes.gff test_data/genes.ncbi test_data/genes.txt test_data/meta_contigs_1.fasta test_data/meta_contigs_2.fasta test_data/meta_ref_1.fasta test_data/meta_ref_2.fasta test_data/meta_ref_3.fasta test_data/operons.bed test_data/operons.gff test_data/operons.txt test_data/reads1.fastq.gz test_data/reads2.fastq.gz test_data/reference.fasta.gz