make: Entering directory '/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer'
mkdir -p /home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/aux_bin
cd /home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/src/kurtz; make mummer
make[1]: Entering directory '/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/src/kurtz'
cd libbasedir; make libbase.a
make[2]: Entering directory '/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/src/kurtz/libbasedir'
make[2]: 'libbase.a' is up to date.
make[2]: Leaving directory '/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/src/kurtz/libbasedir'
cd streesrc; make libstree.a
make[2]: Entering directory '/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/src/kurtz/streesrc'
make[2]: 'libstree.a' is up to date.
make[2]: Leaving directory '/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/src/kurtz/streesrc'
cd mm3src; make mummer
make[2]: Entering directory '/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/src/kurtz/mm3src'
make[2]: '/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/mummer' is up to date.
make[2]: Leaving directory '/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/src/kurtz/mm3src'
make[1]: Leaving directory '/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/src/kurtz'
cd /home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/src/tigr; make all
make[1]: Entering directory '/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/src/tigr'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/src/tigr'
cd /home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/scripts; make all
make[1]: Entering directory '/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/scripts'
/bin/sed  -e 's?__CSH_PATH?/bin/csh?g' \
	-e 's?__BIN_DIR?/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer?g' \
	-e 's?__SCRIPT_DIR?/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/scripts?g' \
	exact-tandems.csh > /home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/exact-tandems
chmod 755 /home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/exact-tandems
/bin/sed  -e 's?__PERL_PATH?/usr/bin/perl?g' \
	-e 's?__SCRIPT_DIR?/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/scripts?g' \
                mapview.pl > /home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/mapview
chmod 755 /home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/mapview
/bin/sed  -e 's?__PERL_PATH?/usr/bin/perl?g' \
                -e 's?__SCRIPT_DIR?/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/scripts?g' \
                -e 's?__BIN_DIR?/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer?g' \
                mummerplot.pl > /home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/mummerplot
chmod 755 /home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/mummerplot
/bin/sed  -e 's?__PERL_PATH?/usr/bin/perl?g' \
                -e 's?__SCRIPT_DIR?/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/scripts?g' \
                -e 's?__AUX_BIN_DIR?/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/aux_bin?g' \
                -e 's?__BIN_DIR?/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer?g' \
                 nucmer.pl > /home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/nucmer
chmod 755 /home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/nucmer
/bin/sed  -e 's?__PERL_PATH?/usr/bin/perl?g' \
                -e 's?__SCRIPT_DIR?/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/scripts?g' \
                -e 's?__AUX_BIN_DIR?/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/aux_bin?g' \
                -e 's?__BIN_DIR?/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer?g' \
                promer.pl > /home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/promer
chmod 755 /home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/promer
/bin/sed  -e 's?__CSH_PATH?/bin/csh?g' \
	-e 's?__BIN_DIR?/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer?g' \
	run-mummer1.csh > /home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/run-mummer1
chmod 755 /home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/run-mummer1
/bin/sed  -e 's?__CSH_PATH?/bin/csh?g' \
	-e 's?__BIN_DIR?/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer?g' \
	run-mummer3.csh > /home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/run-mummer3
chmod 755 /home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/run-mummer3
/bin/sed  -e 's?__PERL_PATH?/usr/bin/perl?g' \
	nucmer2xfig.pl > /home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/nucmer2xfig
chmod 755 /home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/nucmer2xfig
/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \
               -e 's?__SCRIPT_DIR?/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/scripts?g' \
               -e 's?__BIN_DIR?/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer?g' \
                 dnadiff.pl > /home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/dnadiff
chmod 755 /home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/dnadiff
make[1]: Leaving directory '/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer/scripts'
make: Leaving directory '/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/MUMmer'