OBJ_DIR = ../../../obj/
BIN_DIR = ../../../bin/
UTILITIES_DIR = ../../utils/
# -------------------
# define our includes
# -------------------
INCLUDES = -I$(UTILITIES_DIR)/general/ \
			-I$(UTILITIES_DIR)/fileType/ \
			-I$(UTILITIES_DIR)/Contexts/ \
			-I$(UTILITIES_DIR)/GenomeFile/ \
           -I$(UTILITIES_DIR)/FileRecordTools/ \
           -I$(UTILITIES_DIR)/FileRecordTools/FileReaders/ \
           -I$(UTILITIES_DIR)/FileRecordTools/Records/ \
			-I$(UTILITIES_DIR)/KeyListOps/ \
           -I$(UTILITIES_DIR)/BamTools/include \
           -I$(UTILITIES_DIR)/BamTools/src/ \
            -I$(UTILITIES_DIR)/version/
         
         
# ----------------------------------
# define our source and object files
# ----------------------------------
SOURCES= NewChromsweep.cpp NewChromsweep.h CloseSweep.cpp CloseSweep.h
OBJECTS= NewChromsweep.o CloseSweep.o
_EXT_OBJECTS=
EXT_OBJECTS=$(patsubst %,$(OBJ_DIR)/%,$(_EXT_OBJECTS))
BUILT_OBJECTS= $(patsubst %,$(OBJ_DIR)/%,$(OBJECTS))


all: $(BUILT_OBJECTS)

.PHONY: all

$(BUILT_OBJECTS): $(SOURCES)
	@echo "  * compiling" $(*F).cpp
	@$(CXX) -c -o $@ $(*F).cpp $(LDFLAGS) $(CXXFLAGS) $(CPPFLAGS) $(INCLUDES)

clean:
	@echo "Cleaning up."
	@rm -f $(OBJ_DIR)/NewChromsweep.o $(BIN_DIR)/CloseSweep.o

.PHONY: clean