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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| 2to3/ | 2018-07-25 12:36 | - | |
| 86 | 2010-04-06 17:48 | 729 | |
| 86.py | 2022-09-03 13:40 | 956 | |
| ArrayNorm | 2006-06-09 11:58 | 47 | |
| BIRCHSettings.py | 2023-05-15 16:47 | 14K | |
| BIRCHSettings.py.bak | 2019-12-10 16:36 | 14K | |
| BIRCHUserSettings.py | 2022-09-03 13:44 | 6.3K | |
| BLExtractSubset.py | 2023-06-03 15:28 | 3.3K | |
| BLExtractSubset.py.bak | 2008-07-18 21:01 | 3.0K | |
| BLExtractSubset.py.bak1 | 2008-07-18 21:01 | 3.0K | |
| BLHelper.py | 2023-06-20 12:08 | 22K | |
| BLHelper.py.bak4 | 2020-01-14 13:28 | 18K | |
| BLHelper.py.bak5 | 2023-05-15 16:45 | 22K | |
| ConfirmBox.class | 2016-02-11 14:28 | 918 | |
| ConfirmBox.java | 2016-02-10 14:11 | 740 | |
| ConfirmBox2.jar | 2017-04-26 08:40 | 3.2K | |
| DirChooser.class | 2011-10-13 09:27 | 1.1K | |
| DirChooser.java | 2011-10-13 09:27 | 745 | |
| DirChooser2.jar | 2017-04-26 10:18 | 3.7K | |
| ErrorBox.class | 2016-02-27 14:41 | 597 | |
| ErrorBox.java | 2016-02-27 14:41 | 499 | |
| ErrorBox2.jar | 2017-04-27 18:32 | 2.8K | |
| GBfilter | 2001-06-25 21:34 | 457 | |
| GBfilter.py | 2022-09-03 13:59 | 1.0K | |
| Gblocks.py | 2021-03-09 14:57 | 4.7K | |
| Illumina_txt2fastq.py | 2021-03-29 17:57 | 1.3K | |
| Illumina_txt2fastq.sh | 2021-03-29 17:57 | 418 | |
| Info.plist | 2011-05-14 13:53 | 962 | |
| MWCalculator | 2002-10-10 18:49 | 200 | |
| OkayBox.class | 2016-02-11 14:28 | 602 | |
| OkayBox.java | 2016-02-11 08:31 | 505 | |
| OkayBox2.jar | 2017-04-26 09:29 | 2.8K | |
| Trinity | 2023-09-13 17:51 | 434 | |
| Trinity.bak1 | 2022-05-14 16:47 | 151 | |
| Trinity.old | 2019-04-19 18:50 | 136K | |
| Xreadseq | 2002-10-09 18:46 | 521 | |
| ZUKERGDE.py | 2011-05-11 12:29 | 812 | |
| ZUKERGDE.sh | 1993-09-06 14:41 | 273 | |
| __pycache__/ | 2023-07-14 11:42 | - | |
| acePDFviewer.py | 2022-09-03 13:41 | 1.6K | |
| acePSviewer.py | 2022-09-03 13:41 | 1.3K | |
| acedemo | 2022-09-03 13:41 | 125 | |
| acedemo.py | 2022-09-03 13:41 | 125 | |
| acedocument.py | 2022-09-03 13:41 | 1.3K | |
| acespreadsheet.py | 2022-09-03 13:42 | 1.3K | |
| acetextedit.py | 2022-09-03 13:42 | 1.4K | |
| aceviewer.py | 2022-09-03 13:42 | 1.3K | |
| act | 2018-04-23 17:24 | 5.2K | |
| adaptercheck.py | 2021-05-12 17:05 | 6.5K | |
| archaeopteryx | 2021-06-24 13:23 | 233 | |
| archaeopteryx.bak | 2015-07-04 17:46 | 234 | |
| art | 2022-09-13 11:16 | 6.4K | |
| artemis | 2022-09-13 11:16 | 6.4K | |
| bachrest.py | 2022-09-03 13:42 | 3.8K | |
| bachrest.py.bak2 | 2017-03-27 19:52 | 3.7K | |
| bandage.py | 2023-05-20 16:04 | 786 | |
| bgwrapper.sh | 2016-05-02 14:35 | 72 | |
| birch | 2022-03-20 19:33 | 2.8K | |
| birch_launcher | 2015-06-22 12:47 | 1.6K | |
| birchace.html | 2013-08-28 10:06 | 2.2K | |
| birchace.py | 2023-05-20 16:16 | 5.9K | |
| birchace.py.bak1 | 2012-03-29 19:41 | 2.8K | |
| birchace.pyc | 2022-03-23 17:37 | 2.7K | |
| birchadmin | 2021-11-28 15:01 | 3.2K | |
| birchdb | 2022-08-30 17:01 | 141 | |
| birchdb.py | 2022-08-30 17:01 | 141 | |
| birchenv.html | 2015-06-22 12:47 | 3.2K | |
| birchenv.py | 2023-05-20 16:13 | 4.9K | |
| birchenv.pyc | 2020-01-08 21:07 | 3.0K | |
| birchfileview.py | 2022-09-03 13:43 | 423 | |
| birchlib.html | 2015-02-24 16:24 | 20K | |
| birchlib.py | 2020-01-27 13:25 | 22K | |
| birchlib.py.bak1 | 2020-01-27 13:25 | 22K | |
| birchlib.py.bak2 | 2020-01-27 13:25 | 22K | |
| birchlib.pyc | 2020-06-20 14:38 | 23K | |
| birchplatform.csh | 2006-07-19 10:37 | 1.1K | |
| birchplatform.py | 2022-08-30 17:02 | 477 | |
| birchplatform.sh | 2006-07-17 17:16 | 920 | |
| birchpylib/ | 2022-08-30 12:12 | - | |
| birchscript.html | 2015-07-14 16:56 | 4.2K | |
| birchscript.py | 2021-02-10 15:24 | 2.8K | |
| birchscript.py.bak | 2020-01-08 16:16 | 2.6K | |
| birchscript.py.bak2 | 2020-01-11 17:20 | 2.7K | |
| birchscript.pyc | 2021-02-10 15:26 | 3.2K | |
| birchtmpdir.py | 2022-09-03 13:44 | 714 | |
| birchtmpdir.pyc | 2016-04-20 10:34 | 580 | |
| birchtmpdir.sh | 2006-07-07 16:50 | 565 | |
| bl_alias.py | 2022-07-04 18:07 | 3.2K | |
| bl_compress.sh | 2022-07-04 09:11 | 1.8K | |
| bl_compress.sh.bak1 | 2018-07-16 18:34 | 1.0K | |
| bl_decompress.sh | 2022-07-04 09:11 | 1.6K | |
| bl_decompress.sh.bak1 | 2018-07-16 18:34 | 876 | |
| bl_deletefiles.sh | 2018-07-19 14:43 | 1.5K | |
| bl_deletefiles.sh.bak1 | 2018-07-17 11:33 | 1.4K | |
| bl_email.py | 2022-07-04 18:07 | 5.6K | |
| bl_email.py.bak1 | 2020-03-06 10:45 | 5.2K | |
| bl_extract_exons.py | 2022-09-03 13:45 | 526 | |
| bl_extract_splice_si..> | 2022-09-03 13:45 | 536 | |
| bl_fastq_pair.py | 2022-09-03 13:45 | 10K | |
| bl_gffread.py | 2022-09-03 13:45 | 4.6K | |
| bl_hisat2.py | 2022-09-03 13:46 | 8.8K | |
| bl_hisat2.py.bak1 | 2018-07-17 14:18 | 8.4K | |
| bl_magicblast.py | 2021-04-04 17:02 | 16K | |
| bl_magicblast.py.bak1 | 2021-03-27 15:49 | 10K | |
| bl_magicblast.py.bak2 | 2021-03-27 18:01 | 14K | |
| bl_magicblast.py.bak3 | 2021-03-30 12:50 | 15K | |
| bl_ncbiquery | 2023-05-20 16:22 | 657 | |
| bl_pollux.sh | 2019-05-16 12:32 | 1.8K | |
| bl_pollux.sh.bak1 | 2018-06-11 14:50 | 1.6K | |
| bl_rcorrector.py | 2022-08-30 17:25 | 6.2K | |
| bl_rename.py | 2024-12-13 12:15 | 5.0K | |
| bl_rename.py.bak1 | 2019-01-05 19:31 | 3.1K | |
| bl_rename.py.bak2 | 2021-03-08 20:11 | 4.6K | |
| bl_samtools-stats.sh | 2021-06-01 15:28 | 1.3K | |
| bl_seqkit_convert.py | 2021-05-21 18:58 | 5.2K | |
| bl_seqkit_convert.py..> | 2021-05-21 12:07 | 4.3K | |
| bl_seqkit_fq2fa.py | 2022-09-03 13:46 | 5.5K | |
| bl_seqkit_grep.py | 2021-03-26 14:44 | 7.1K | |
| bl_seqkit_sample.py | 2022-09-03 13:47 | 7.4K | |
| bl_seqkit_sample.py...> | 2019-01-15 13:37 | 5.1K | |
| bl_seqkit_sample.py...> | 2019-02-25 20:04 | 6.9K | |
| bl_seqkit_sample.sh | 2021-04-05 15:38 | 1.2K | |
| bl_seqreadlist.py | 2022-09-03 13:47 | 15K | |
| bl_seqreadlist.py.bak5 | 2018-06-18 17:20 | 14K | |
| bl_seqreadlist.py.bak6 | 2019-04-22 10:26 | 14K | |
| bl_seqreadlist.py.bak7 | 2021-03-13 14:29 | 15K | |
| bl_soap-trans.py | 2022-09-03 13:48 | 14K | |
| bl_soapdenovo2.py | 2022-09-03 13:47 | 11K | |
| bl_soapdenovo2.py.bak1 | 2019-05-05 15:30 | 11K | |
| bl_soapdenovo2.py.bak2 | 2019-05-06 13:18 | 11K | |
| bl_stringtie.py | 2022-09-03 13:48 | 6.4K | |
| bl_stringtie.py.bak1 | 2018-05-13 13:11 | 2.6K | |
| bl_transrate.sh | 2018-06-10 17:59 | 1.1K | |
| bl_trim_galore.py | 2022-09-03 13:48 | 14K | |
| bl_trim_galore.py.bak1 | 2018-01-16 16:04 | 13K | |
| bl_trimmomatic.py | 2019-05-19 17:37 | 9.9K | |
| bl_trimmomatic.py.bak1 | 2019-05-18 12:22 | 9.0K | |
| blast2gi.py | 2022-09-03 13:44 | 2.8K | |
| blastdbkit.py | 2023-07-02 14:10 | 61K | |
| blastdbkit.py.bak1 | 2020-01-18 16:24 | 56K | |
| blastdbkit.py.bak13 | 2020-04-05 13:49 | 57K | |
| blastdbkit.py.bak14 | 2020-04-11 11:52 | 57K | |
| blastdbkit.py.bak15 | 2021-10-04 13:58 | 59K | |
| blastdbkit.py.bak16 | 2022-06-26 17:16 | 61K | |
| blastdbkit.pydoc.html | 2020-04-11 11:55 | 20K | |
| blastdbkit.sh | 2020-04-05 12:15 | 3.2K | |
| blastviewer | 2020-06-22 13:13 | 66 | |
| blblastout.py | 2022-09-03 13:44 | 12K | |
| blblastout.py.bak6 | 2020-04-17 10:35 | 12K | |
| blblastout.py.bak7 | 2020-06-22 16:07 | 12K | |
| blblastout.py.bak8 | 2020-07-27 15:10 | 12K | |
| blblastout.py.bak9 | 2021-01-13 13:18 | 12K | |
| blblastout.py.bak10 | 2021-01-14 11:25 | 12K | |
| bldirtab.py | 2022-07-01 12:50 | 2.1K | |
| bldirtab.py.bak2 | 2018-07-14 20:14 | 2.0K | |
| bldna | 2022-09-03 13:27 | 3.1K | |
| bldna.bak2 | 2015-06-22 12:47 | 2.0K | |
| bldna.turtle | 2015-06-22 12:47 | 2.0K | |
| blenzyme | 2015-06-23 14:47 | 1.3K | |
| blfastaout.py | 2024-11-09 17:42 | 12K | |
| blfastaout.py.bak2 | 2020-01-22 13:40 | 9.8K | |
| blfastaout.py.bak3 | 2020-04-16 19:48 | 11K | |
| blfastaout.py.bak4 | 2024-11-08 14:57 | 12K | |
| blgeneric | 2021-11-28 15:02 | 2.1K | |
| blmarker | 2022-09-03 13:31 | 2.8K | |
| blnalign | 2021-11-28 15:03 | 2.6K | |
| blncbi | 2021-11-28 15:04 | 2.4K | |
| blncbi.bak1 | 2020-07-07 12:47 | 2.8K | |
| blnfetch | 2021-11-28 15:05 | 3.0K | |
| blnfetch.bak1 | 2020-07-07 12:47 | 2.3K | |
| blpalign | 2022-09-03 13:29 | 2.2K | |
| blpfetch | 2021-11-28 15:06 | 3.0K | |
| blprefs | 2021-11-28 15:07 | 957 | |
| blprotein | 2022-09-03 13:28 | 2.8K | |
| blprotein.bak1 | 2015-06-22 12:47 | 1.7K | |
| blreads | 2022-09-03 15:04 | 4.2K | |
| blrevcomp | 2009-05-25 14:30 | 67 | |
| blsort.py | 2022-07-02 17:12 | 9.8K | |
| blsort.py.bak4 | 2019-01-22 16:41 | 9.8K | |
| blsort.py.bak5 | 2019-01-23 15:44 | 9.9K | |
| blsort.py.bak6 | 2020-01-19 15:01 | 9.9K | |
| blsort.py.bak7 | 2022-07-02 16:53 | 9.9K | |
| bltable | 2022-09-03 13:29 | 2.4K | |
| bltree | 2023-06-02 15:16 | 1.8K | |
| bltreeoutput.py | 2023-06-05 15:59 | 2.9K | |
| bltreeoutput.py.bak1 | 2015-07-14 18:05 | 3.1K | |
| bltsv2name.py | 2022-07-01 12:51 | 777 | |
| brig | 2016-12-03 17:20 | 219 | |
| browser.csh | 2015-06-22 12:47 | 3.7K | |
| browser.failsafe.csh | 2015-06-22 12:47 | 6.4K | |
| browser.failsafe.py | 2022-09-03 13:49 | 5.3K | |
| browser.py | 2022-07-01 16:56 | 4.9K | |
| browser.pyc | 2020-01-19 13:14 | 2.6K | |
| browser.sh | 2015-06-22 12:47 | 3.8K | |
| btail.py | 2022-09-03 13:49 | 800 | |
| choose_edit_wrapper.py | 2022-09-03 13:49 | 390 | |
| choose_edit_wrapper.sh | 2015-06-22 12:47 | 581 | |
| choosehost | 2006-11-25 17:06 | 813 | |
| choosehost.py | 2022-09-03 13:50 | 4.5K | |
| chooseviewer.py | 2024-11-19 11:03 | 8.0K | |
| chooseviewer.py.bak7 | 2023-06-02 15:52 | 7.3K | |
| chooseviewer.py.bak8 | 2023-06-02 16:58 | 7.9K | |
| clu2ig | 2001-09-02 16:51 | 1.0K | |
| clu2ig.py | 2022-09-03 13:50 | 1.3K | |
| clustalx.py | 2011-05-11 12:27 | 2.0K | |
| comwin | 1994-11-01 12:22 | 1.1K | |
| confadd | 2021-02-15 15:20 | 168 | |
| consense.py | 2023-06-05 16:05 | 3.4K | |
| consense.py.bak | 2020-02-25 14:59 | 3.4K | |
| consensus.py | 2022-09-03 13:51 | 1.4K | |
| convert_genbank_to_gff3 | 2016-10-01 18:19 | 121 | |
| convert_genbank_to_g..> | 2022-09-03 13:51 | 8.5K | |
| correct | 2011-04-07 17:34 | 439 | |
| correct.csh | 2005-05-10 15:00 | 335 | |
| correct.py | 2022-09-03 13:51 | 782 | |
| createlauncher.html | 2013-08-28 11:56 | 5.7K | |
| createlauncher.py | 2023-05-15 17:11 | 5.1K | |
| createlauncher.py.bak | 2019-12-10 16:36 | 5.1K | |
| csh2sh.py | 2023-03-13 15:04 | 6.5K | |
| csv2phyl.py | 2022-09-03 13:52 | 1.8K | |
| csv2phyl.sh | 2008-05-02 12:38 | 2.5K | |
| customdoc.py | 2022-09-03 13:52 | 7.5K | |
| customdoc.py.bak2 | 2018-07-25 11:26 | 5.1K | |
| customdoc.py.bak3 | 2019-01-13 15:45 | 6.2K | |
| cutadapt.bak | 2018-01-21 13:30 | 262 | |
| cytoscape | 2023-09-04 12:08 | 4.0K | |
| dat2ace.py | 2022-09-03 13:53 | 2.0K | |
| decorator | 2020-06-24 18:45 | 180 | |
| deprecated/ | 2023-05-23 18:21 | - | |
| discpars.py | 2022-09-03 13:53 | 9.2K | |
| discpars.py.bak | 2020-02-26 12:00 | 9.3K | |
| dnadist.py | 2022-09-03 13:53 | 11K | |
| dnadist.py.bak | 2020-01-27 15:57 | 9.9K | |
| dnadist.py.bak1 | 2013-11-01 15:39 | 9.9K | |
| dnadist.py.bak2 | 2020-02-05 13:39 | 10K | |
| dnadist.py.bak3 | 2021-02-13 17:58 | 11K | |
| dnaml.py | 2022-09-03 13:54 | 7.6K | |
| dnaml.py.bak | 2020-01-27 16:07 | 6.1K | |
| dnaml.py.bak1 | 2013-11-01 18:36 | 6.1K | |
| dnaml.py.bak2 | 2020-10-27 17:59 | 6.1K | |
| dnaml.py.bak3 | 2020-10-29 15:11 | 7.2K | |
| dnaml.py.bak4 | 2021-02-13 19:34 | 7.3K | |
| dnapars.py | 2022-09-03 13:54 | 8.6K | |
| dnapars.py.bak | 2013-11-01 16:30 | 5.5K | |
| dnapars.py.bak1 | 2013-11-01 16:30 | 5.5K | |
| dnapars.py.bak2 | 2020-01-27 16:05 | 5.5K | |
| dnapars.py.bak3 | 2021-02-16 16:59 | 7.1K | |
| dnapars.pyc | 2012-03-22 13:57 | 3.8K | |
| doc2ace.py | 2021-04-16 15:28 | 2.3K | |
| drawgram.py | 2022-09-03 13:54 | 2.6K | |
| drawgram.py.bak | 2020-02-25 14:46 | 2.6K | |
| drawtree.py | 2022-09-03 13:55 | 2.8K | |
| drawtree.py.bak | 2020-02-25 14:46 | 2.8K | |
| dsearch | 1998-04-18 17:29 | 682 | |
| dxhom.py | 2024-11-06 12:56 | 4.3K | |
| dxhom.py.bak2 | 2023-05-24 15:13 | 3.4K | |
| einsi | 2015-08-05 15:02 | 518 | |
| expressionBrowser | 2002-10-10 18:56 | 429 | |
| extract_exons.py | 2022-09-03 13:55 | 5.5K | |
| extract_from_pdb | 2001-07-11 16:40 | 14K | |
| extract_splice_sites.py | 2022-09-03 13:55 | 4.9K | |
| fasta2singles | 2010-07-20 14:27 | 49 | |
| fasta2singles.pl | 2010-07-20 14:18 | 544 | |
| fastalen.py | 2021-06-07 20:08 | 8.8K | |
| fastalen.py.bak2 | 2021-06-07 12:01 | 7.9K | |
| fastalen.py.bak3 | 2021-06-07 14:16 | 8.2K | |
| fastalen.py.bak4 | 2021-06-07 18:01 | 8.6K | |
| fastq-interleave | 2023-10-09 17:54 | 518 | |
| fastqc | 2022-03-24 09:07 | 15K | |
| fastqc.sh | 2022-03-04 18:21 | 743 | |
| features | 2011-02-21 16:32 | 22K | |
| features.py | 2024-08-02 16:45 | 22K | |
| features.py.bak1 | 2024-06-16 13:02 | 21K | |
| features.py.bak2 | 2024-07-13 18:13 | 22K | |
| features.py.old | 2011-05-11 12:27 | 23K | |
| fetch | 2007-02-24 17:04 | 28K | |
| fetch.py | 2011-05-11 12:27 | 31K | |
| fftns | 2015-08-05 15:03 | 518 | |
| fftnsi | 2015-08-05 15:03 | 519 | |
| findjava.bak2.sh | 2022-03-24 11:48 | 392 | |
| findjava.sh | 2023-05-20 16:29 | 336 | |
| findpython.sh | 2023-05-20 16:30 | 388 | |
| findpython2.out | 2022-08-30 18:01 | 1.5K | |
| findpython2.sh | 2022-08-30 18:00 | 162 | |
| fixfq-bigmem.py | 2021-05-23 08:45 | 6.7K | |
| fixfq.py | 2021-06-10 12:06 | 7.0K | |
| fixfq.py.bak2 | 2021-05-19 19:59 | 6.3K | |
| fixfq.py.bak3 | 2021-05-20 19:38 | 6.6K | |
| fixfq.py.bak4 | 2021-05-23 16:45 | 6.6K | |
| flat2list.py | 2010-09-01 22:04 | 3.0K | |
| flat2tree.py | 2023-06-02 16:55 | 3.2K | |
| flatcnv.py | 2022-09-03 13:58 | 5.7K | |
| forester_rid | 2020-06-15 17:08 | 167 | |
| free2fasta.py | 2022-09-03 13:57 | 2.2K | |
| free2fasta.py.bak1 | 2011-10-01 16:09 | 2.0K | |
| gap4 | 2005-08-13 13:49 | 92 | |
| gb2gff | 2016-10-02 19:31 | 147 | |
| gb2gff3.py | 2022-09-03 13:58 | 397 | |
| gde_help_viewer.csh | 2015-06-22 12:47 | 2.5K | |
| gde_help_viewer.py | 2015-06-22 12:47 | 1.9K | |
| gedit_wrapper.py | 2023-07-04 16:47 | 1.4K | |
| gedit_wrapper.sh | 2013-11-15 15:57 | 1.1K | |
| genericdist.csh | 2007-05-15 16:16 | 5.5K | |
| genericdist.py | 2011-05-11 12:27 | 4.9K | |
| genographer | 2005-03-02 16:18 | 1.2K | |
| genographer.py | 2022-08-30 17:04 | 1.4K | |
| genographer.py.bak | 2011-05-11 12:27 | 1.4K | |
| getbirch.py | 2010-06-29 18:06 | 2.0K | |
| getob | 2010-12-17 11:45 | 266 | |
| gfetch | 2014-05-26 16:16 | 496 | |
| gfetch.py | 2022-09-03 14:00 | 1.4K | |
| gff2gtf.py | 2022-09-03 14:00 | 637 | |
| gff2gtf.py.bak1 | 2018-05-11 11:34 | 598 | |
| gi2size.py | 2005-01-23 20:14 | 4.5K | |
| ginsi | 2015-08-05 15:04 | 518 | |
| gstat.py | 2022-09-03 14:00 | 17K | |
| gstat.py.bak | 2013-05-16 14:03 | 17K | |
| gstat.py.bak1 | 2013-05-16 14:03 | 17K | |
| guesspairs.py | 2022-09-03 14:01 | 8.8K | |
| hisat2_extract_exons.py | 2022-09-03 14:01 | 5.5K | |
| hisat2_extract_snps_..> | 2022-09-03 14:02 | 19K | |
| hisat2_extract_snps_..> | 2022-09-03 14:02 | 33K | |
| hisat2_extract_splic..> | 2022-09-03 14:02 | 4.9K | |
| hisat2_simulate_read..> | 2022-09-03 14:02 | 32K | |
| hisatgenotype.py | 2022-09-03 14:02 | 18K | |
| hisatgenotype_build_..> | 2022-09-03 14:02 | 19K | |
| hisatgenotype_extrac..> | 2022-09-03 14:03 | 16K | |
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