# fasta -Q -T 4 -m "F8 NP_894055.pro.fasta.tsv" -m "F2 NP_894055.pro.fasta2" NP_894055.pro.fsa @/home/psgendb/BIRCHDEV/dat/fasta/pdbaa.nam 3 FASTA searches a protein or DNA sequence data bank version 36.3.6 Aug., 2014(preload9) Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: NP_894055.pro.fsa 1>>>gi|33862495|ref|NP_894055.1| Amino acid permease:Permease for amino acids and related comp... [Prochlorococcus marinus str. MIT 9313] - 615 aa Library: @/home/psgendb/BIRCHDEV/dat/fasta/pdbaa.nam 20561802 residues in 83265 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.2936+/-0.000395; mu= 1.8937+/- 0.018 mean_var=45.7217+/- 8.440, 0's: 396 Z-trim(99.8): 476 B-trim: 253 in 1/51 Lambda= 0.189676 statistics sampled from 9395 (9407) to 9395 sequences Algorithm: FASTA (3.8 Nov 2011) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 3, E-join: 1 (0.381), E-opt: 0.2 (0.113), width: 16 Scan time: 0.820 The best scores are: opt bits E(83265) pdb|3GI8|C Chain C, Crystal Structure Of ( 444) 146 47.6 0.0001 pdb|2KMG|A Chain A, The Structure Of The ( 142) 86 32.2 1.5 pdb|3IXL|A Chain A, Crystal Structure Of ( 240) 88 32.3 2.4 pdb|1JTT|A Chain A, Degenerate Interfaces ( 133) 81 30.8 3.5 pdb|1MEL|A Chain A, Crystal Structure Of A ( 148) 81 30.8 4.2 pdb|1JTP|A Chain A, Degenerate Interfaces ( 148) 81 30.8 4.2 pdb|3EIS|A Chain A, Crystal Structure Of ( 240) 85 31.5 4.2 pdb|3IXM|A Chain A, Structure Of The Gly7 ( 240) 85 31.5 4.2 pdb|3DTV|B Chain B, Crystal Structure Of ( 240) 85 31.5 4.2 pdb|2DL0|A Chain A, Solution Structure Of ( 97) 77 30.0 4.6 pdb|1ZMY|A Chain A, Cabbcii-10 Vhh Framewo ( 142) 80 30.5 4.7 pdb|4Q65|A Chain A, Structure Of The E. C ( 493) 90 32.2 5 pdb|2WVE|A Chain A, Structural And Mechan ( 148) 80 30.5 5 pdb|4DOH|B Chain B, Il20/il201/il20r2 Ter ( 206) 82 30.8 5.8 pdb|3DTV|A Chain A, Crystal Structure Of ( 240) 82 30.6 7.4 pdb|3DTV|D Chain D, Crystal Structure Of ( 240) 82 30.6 7.4 pdb|3DG9|A Chain A, Crystal Structure Of ( 248) 82 30.6 7.8 pdb|2VLB|A Chain A, Structure Of Unligand ( 251) 82 30.6 7.9 >>pdb|3GI8|C Chain C, Crystal Structure Of (444 aa) initn: 50 init1: 50 opt: 146 Z-score: 205.4 bits: 47.6 E(83265): 0.0001 Smith-Waterman score: 146; 22.2% identity (55.6% similar) in 374 aa overlap (38-385:13-365) 10 20 30 40 50 60 ref|NP LGHPLLRKKVDDERLPSVQALPILSSDALSSVAYATEAALGVLILG--GSGA--LGLSVP pdb|3G MELKNKKLSLWEA.SM.VGVMI.AS.FSIF.V..KIA.RNL. 70 80 90 100 110 120 ref|NP ITLAIIALVAIVV-LSYRQAIEAYPKGGGSYVVARDNLGRNVGLIAAAALLIDYTLTAGV pdb|3G E.FILSGIY.LL.AY..TKLGAKIVSNA.PIAFIHKAI.D.I-ITG.LSI.LWMSYVISI 130 140 150 160 170 ref|NP SLMAGTQALSSLVPSMLDHEVS---LALLLLALIGW---ANLRGLKETGRLFSLPTYAFV pdb|3G A.F.--KGFAGYFLPLINAPINTFNI.ITEIGIVAFFTAL.FF.S.AV..-----AEF.I 180 190 200 210 220 230 ref|NP VMVALLIL-----AGLKDLIFEHGFVPDMPPAVQAVQPLGWFLILRAFSSGCSAMTGIES pdb|3G .L......GLFIF...IT-.HPSYVI..LA.S--..S--.MIFASAI.F--L.Y.-.FGV 240 250 260 270 280 ref|NP IANGVKVFQEPAVVNARRTLLVMGVLLAAMFLAVSGLGYMYGIAPNDRVTVLAQ----IG pdb|3G .T.ASEHIEN.KK-.VP.AIFIS--I.IV..VY.GVAISAI.NL.I.ELIKASENALAVA 290 300 310 320 330 340 ref|NP SRAF-GSGSVLLWALQLSTLLILVLAANTAFAGFPRLAAMLAEDHCLPRQLS---WIGDR pdb|3G AKP.L.NLGF..--ISIGA.FSISS.M.ATIY.GANV.YS..K.GE..EFFERKV.FKST 350 360 370 380 390 400 ref|NP --LVYQNGIGVLLLVTALIIVICKGDTTVAVNLYALGVFTAFTLSQLGLVRRWWRLRGNG pdb|3G EG.YITSAL...FALLFNMEGVASITSA.FMVI.LFVILSHYI.IDEVGGRKEIVIFSFI 410 420 430 440 450 460 ref|NP WQGRLLMNALGAVTTFVVLVVIVVSKFQEGAWTVVIAIPALVWGLAQIRRRYRKAYAALA pdb|3G VVLGVFLLLLYYQWITNRFVFYGIIATFIGVLIFEIIYRKVTKRTFSNNMYVKSLESSGL >>pdb|2KMG|A Chain A, The Structure Of The (142 aa) initn: 61 init1: 61 opt: 86 Z-score: 130.6 bits: 32.2 E(83265): 1.5 Smith-Waterman score: 86; 29.1% identity (56.3% similar) in 103 aa overlap (321-420:7-101) 300 310 320 330 340 350 ref|NP FGSGSVLLWALQLSTLLILVLAANTAFAGFPRLAAMLAEDHCLPRQLSWIGDRLVYQNGI pdb|2K MNTEEQ.VT.SLV..AQR.DFLPTYF.P..MMRGEA 360 370 380 390 400 ref|NP GVLLLVTALIIVICKGDTTVAVNLYAL---GVFTAFTLSQLGLVRRWWRLRGNGWQGRLL pdb|2K ----..Y.WMRRL.ERYNGAYWHY...SDG.FYM.PD.A--.--.LEIEVN...FR.E.S 410 420 430 440 450 460 ref|NP MNALGAVTTFVVLVVIVVSKFQEGAWTVVIAIPALVWGLAQIRRRYRKAYAALALEPDFG pdb|2K AD.A.I.A.LFA.GQLAAEIADTDAADALIDRYHFLRGFAAGHPEAAAIYRAID >>pdb|3IXL|A Chain A, Crystal Structure Of (240 aa) initn: 48 init1: 48 opt: 88 Z-score: 127.1 bits: 32.3 E(83265): 2.4 Smith-Waterman score: 88; 28.5% identity (54.1% similar) in 172 aa overlap (200-364:13-171) 170 180 190 200 210 220 ref|NP LPTYAFVVMVALLILAGLKDLIFEHGFVPDMPPAVQAVQPLGWFLI--LRAFSSGCSAMT pdb|3I MQQASTPTIGMIV...AGL.PAD.AR.YPD.PFIA..----L 230 240 250 260 270 280 ref|NP GIESIA-NGVKVFQEPAVVNARRTLLVMGVLLAAMFLAVSGLGYMYGIAPNDRVTVLAQI pdb|3I .LG.VTPE.YDAVI.SV.DH...-.QKQ.A--.VVS.MCTS.SFYR.A.F.AAL..-.MR 290 300 310 320 330 340 ref|NP GSRAFGSGSVLLWALQ-LSTLLILVLAANTAFAG--FPRLAAMLAEDHCLPRQLSWIGDR pdb|3I EATGLPCTTMSTAV.NG.RA.GVRRV.LA..YIDDVNE....F...ESLV.T-----.X. 350 360 370 380 390 400 ref|NP LVYQNGIGVLLLV-TALIIVICKGDTTVAVNLYALGVFTAFTLSQLGLVRRWWRLRGNGW pdb|3I SLGIT.VEAMAR.D..TLVDL.VRAFEAAPDSDGILLSSGGLLTLDAIPEVERRLGVPVV >>pdb|1JTT|A Chain A, Degenerate Interfaces (133 aa) initn: 79 init1: 42 opt: 81 Z-score: 124.0 bits: 30.8 E(83265): 3.5 Smith-Waterman score: 81; 27.6% identity (60.3% similar) in 58 aa overlap (478-529:29-86) 450 460 470 480 490 500 ref|NP QIRRRYRKAYAALALEPDFGPLQVEPRQPPLGNHCIVWI---PGLWRASMEALRYGCSI- pdb|1J DVQLQASGGGSVQAGGSLRLSCAASGYTI.PY.MG.FRQA..KE.EGVA.INM.GG.T 510 520 530 540 550 560 ref|NP --ADSVTAVFVLGDDDDPDAIRTAWDRLVGDHPGELELRLLESHFSSVIDPFCDYVVEQE pdb|1J YY....KGR.TISQ.NAKNTVYLLMNS.EPEDTAIYYCAADSTIYASYYECGHGLSTGGY >>pdb|1MEL|A Chain A, Crystal Structure Of A (148 aa) initn: 62 init1: 42 opt: 81 Z-score: 122.7 bits: 30.8 E(83265): 4.2 Smith-Waterman score: 81; 27.6% identity (60.3% similar) in 58 aa overlap (478-529:29-86) 450 460 470 480 490 500 ref|NP QIRRRYRKAYAALALEPDFGPLQVEPRQPPLGNHCIVWI---PGLWRASMEALRYGCSI- pdb|1M DVQLQASGGGSVQAGGSLRLSCAASGYTI.PY.MG.FRQA..KE.EGVA.INM.GG.T 510 520 530 540 550 560 ref|NP --ADSVTAVFVLGDDDDPDAIRTAWDRLVGDHPGELELRLLESHFSSVIDPFCDYVVEQE pdb|1M YY....KGR.TISQ.NAKNTVYLLMNS.EPEDTAIYYCAADSTIYASYYECGHGLSTGGY >>pdb|1JTP|A Chain A, Degenerate Interfaces (148 aa) initn: 62 init1: 42 opt: 81 Z-score: 122.7 bits: 30.8 E(83265): 4.2 Smith-Waterman score: 81; 27.6% identity (60.3% similar) in 58 aa overlap (478-529:29-86) 450 460 470 480 490 500 ref|NP QIRRRYRKAYAALALEPDFGPLQVEPRQPPLGNHCIVWI---PGLWRASMEALRYGCSI- pdb|1J DVQLQASGGGSVQAGGSLRLSCAASGYTI.PY.MG.FRQA..KE.EGVA.INM.GG.T 510 520 530 540 550 560 ref|NP --ADSVTAVFVLGDDDDPDAIRTAWDRLVGDHPGELELRLLESHFSSVIDPFCDYVVEQE pdb|1J YY....KGR.TISQ.NAKNTVYLLMNS.EPEDTAIYYCAADSTIYASYYECGHGLSTGGY >>pdb|3EIS|A Chain A, Crystal Structure Of (240 aa) initn: 48 init1: 48 opt: 85 Z-score: 122.7 bits: 31.5 E(83265): 4.2 Smith-Waterman score: 85; 28.5% identity (54.1% similar) in 172 aa overlap (200-364:13-171) 170 180 190 200 210 220 ref|NP LPTYAFVVMVALLILAGLKDLIFEHGFVPDMPPAVQAVQPLGWFLI--LRAFSSGCSAMT pdb|3E MQQASTPTIGMIV...AGL.PAD.AR.YPD.PFIA..----L 230 240 250 260 270 280 ref|NP GIESIA-NGVKVFQEPAVVNARRTLLVMGVLLAAMFLAVSGLGYMYGIAPNDRVTVLAQI pdb|3E .LG.VTPE.YDAVI.SV.DH...-.QKQ.A--.VVS.MGTS.SFYR.A.F.AAL..-.MR 290 300 310 320 330 340 ref|NP GSRAFGSGSVLLWALQ-LSTLLILVLAANTAFAG--FPRLAAMLAEDHCLPRQLSWIGDR pdb|3E EATGLPCTTMSTAV.NG.RA.GVRRV.LA..YIDDVNE....F...ESLV.T-----.X. 350 360 370 380 390 400 ref|NP LVYQNGIGVLLLV-TALIIVICKGDTTVAVNLYALGVFTAFTLSQLGLVRRWWRLRGNGW pdb|3E SLGIT.VEAMAR.D..TLVDL.VRAFEAAPDSDGILLSXGGLLTLDAIPEVERRLGVPVV >>pdb|3IXM|A Chain A, Structure Of The Gly7 (240 aa) initn: 48 init1: 48 opt: 85 Z-score: 122.7 bits: 31.5 E(83265): 4.2 Smith-Waterman score: 85; 28.5% identity (54.1% similar) in 172 aa overlap (200-364:13-171) 170 180 190 200 210 220 ref|NP LPTYAFVVMVALLILAGLKDLIFEHGFVPDMPPAVQAVQPLGWFLI--LRAFSSGCSAMT pdb|3I MQQASTPTIGMIV...AGL.PAD.AR.YPD.PFIA..----L 230 240 250 260 270 280 ref|NP GIESIA-NGVKVFQEPAVVNARRTLLVMGVLLAAMFLAVSGLGYMYGIAPNDRVTVLAQI pdb|3I .LG.VTPE.YDAVI.SV.DH...-.QKQ.A--.VVS.MCTS.SFYR.A.F.AAL..-.MR 290 300 310 320 330 340 ref|NP GSRAFGSGSVLLWALQ-LSTLLILVLAANTAFAG--FPRLAAMLAEDHCLPRQLSWIGDR pdb|3I EATGLPCTTMSTAV.NG.RA.GVRRV.LA..YIDDVNE....F...ESLV.T-----.C. 350 360 370 380 390 400 ref|NP LVYQNGIGVLLLV-TALIIVICKGDTTVAVNLYALGVFTAFTLSQLGLVRRWWRLRGNGW pdb|3I SLGIT.VEAMAR.D..TLVDL.VRAFEAAPDSDGILLSCGGLLTLDAIPEVERRLGVPVV >>pdb|3DTV|B Chain B, Crystal Structure Of (240 aa) initn: 48 init1: 48 opt: 85 Z-score: 122.7 bits: 31.5 E(83265): 4.2 Smith-Waterman score: 85; 28.5% identity (54.1% similar) in 172 aa overlap (200-364:13-171) 170 180 190 200 210 220 ref|NP LPTYAFVVMVALLILAGLKDLIFEHGFVPDMPPAVQAVQPLGWFLI--LRAFSSGCSAMT pdb|3D MQQASTPTIGMIV...AGL.PAD.AR.YPD.PFIA..----L 230 240 250 260 270 280 ref|NP GIESIA-NGVKVFQEPAVVNARRTLLVMGVLLAAMFLAVSGLGYMYGIAPNDRVTVLAQI pdb|3D .LG.VTPE.YDAVI.SV.DH...-.QKQ.A--.VVS.MGTS.SFYR.A.F.AAL..-.MR 290 300 310 320 330 340 ref|NP GSRAFGSGSVLLWALQ-LSTLLILVLAANTAFAG--FPRLAAMLAEDHCLPRQLSWIGDR pdb|3D EATGLPCTTMSTAV.NG.RA.GVRRV.LA..YIDDVNE....F...ESLV.T-----.X. 350 360 370 380 390 400 ref|NP LVYQNGIGVLLLV-TALIIVICKGDTTVAVNLYALGVFTAFTLSQLGLVRRWWRLRGNGW pdb|3D SLGIT.VEAMAR.D..TLVDL.VRAFEAAPDSDGILLSCGGLLTLDAIPEVERRLGVPVV >>pdb|2DL0|A Chain A, Solution Structure Of (97 aa) initn: 62 init1: 41 opt: 77 Z-score: 122.0 bits: 30.0 E(83265): 4.6 Smith-Waterman score: 77; 30.2% identity (57.0% similar) in 86 aa overlap (89-171:7-85) 60 70 80 90 100 110 ref|NP GLSVPITLAIIALVAIVVLSYRQAIEAYPKGGGSYVVARDNLGRNVGLIAAAALLIDYTL pdb|2D GSSGSS...LTEIC.KPV--SP.C.SSVS---.WLI 120 130 140 150 160 170 ref|NP TAGVSLMAGTQALSSLVPSMLDHEVSLALLLLALIGWA---NLRGLKETGRLFSLPTYAF pdb|2D SI.LPMY...--..TAGF.T.SQVP..SHTC.QEA.ITEERHI.K.LSAA...K..PGPE 180 190 200 210 220 230 ref|NP VVMVALLILAGLKDLIFEHGFVPDMPPAVQAVQPLGWFLILRAFSSGCSAMTGIESIANG pdb|2D AMSGPSSG >>pdb|1ZMY|A Chain A, Cabbcii-10 Vhh Framewo (142 aa) initn: 79 init1: 42 opt: 80 Z-score: 121.7 bits: 30.5 E(83265): 4.7 Smith-Waterman score: 80; 27.6% identity (58.6% similar) in 58 aa overlap (478-529:29-86) 450 460 470 480 490 500 ref|NP QIRRRYRKAYAALALEPDFGPLQVEPRQPPLGNHCIVWI---PGLWRASMEALRYGCSI- pdb|1Z QVQLVESGGGSVQAGGSLRLSCTASGYTI.PY.MG.FRQA..GE.EAVA.INM.GG.T 510 520 530 540 550 560 ref|NP --ADSVTAVFVLGDDDDPDAIRTAWDRLVGDHPGELELRLLESHFSSVIDPFCDYVVEQE pdb|1Z YY....KGR.TISR.NAKNTVTLQMNS.KPEDTAMYYCAADSTIYASYYECGHGLSTGGY >>pdb|4Q65|A Chain A, Structure Of The E. C (493 aa) initn: 60 init1: 60 opt: 90 Z-score: 121.3 bits: 32.2 E(83265): 5 Smith-Waterman score: 90; 21.7% identity (55.6% similar) in 198 aa overlap (269-456:66-258) 240 250 260 270 280 290 ref|NP FQEPAVVNARRTLLVMGVLLAAMFLAVSGLGYMYGIAPNDRVTVLAQIGSRAFGSGSVLL pdb|4Q LTNQLKYNDTHAYELFSAYCSLVYVTPILG.FLADKVLGN.MA.M--L.ALLMAI.H.V. 300 310 320 330 340 350 ref|NP WALQLS-TLLILVLAANTAFAGFPR--LAAMLAE--DHCLPRQLSWIGDRLVYQNG-IGV pdb|4Q G.SEIHPSF.Y.S..IIVCGY.LFKSNVSCL.G.LYEPTD..RDG--.FS.M.AA.NV.S 360 370 380 390 400 ref|NP LLLVTALIIVICKGDTTVAVNLYALGVFTAFTLSQLGLVRRWWRLRGNGWQ----GRLLM pdb|4Q IIAPI.CGYAQEEYSWAMGFG.A.V.MIAGLVIFLC.-N.HFTHT..VNKKVLRATNF.L 410 420 430 440 450 460 ref|NP NALGAVTTFVVLVVIVVSKFQEGAWTVVIAIPALVWGLAQIRRRYRKAYAALALEPDFGP pdb|4Q PNW.WLLVLL.ATPALITILFWKE.S.YAL.V.TII..GVLAKI....ENQKQRKELGLI 470 480 490 500 510 520 ref|NP LQVEPRQPPLGNHCIVWIPGLWRASMEALRYGCSIADSVTAVFVLGDDDDPDAIRTAWDR pdb|4Q VTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAW >>pdb|2WVE|A Chain A, Structural And Mechan (148 aa) initn: 41 init1: 41 opt: 80 Z-score: 121.2 bits: 30.5 E(83265): 5 Smith-Waterman score: 80; 29.8% identity (64.3% similar) in 84 aa overlap (536-613:24-102) 510 520 530 540 550 560 ref|NP SVTAVFVLGDDDDPDAIRTAWDRLVGDHPGELELRLLESHFSS----VIDPFCDYVVEQE pdb|2W MDTPNKDDSIIRFSVSLQQNLLD..DN.IIKNGY..RSEL.R.MIREKL..DN 570 580 590 600 610 ref|NP --ELHPERTTTVVMALVITRDWLDQTLLNQRAVYLFKALSGDYSRVFCVVRYYLAG pdb|2W WA.DN.NDESKIAV-..VIY.H-H.RE....MIDI.H.-..--TH.L.TTHIHMDEHNCL >>pdb|4DOH|B Chain B, Il20/il201/il20r2 Ter (206 aa) initn: 42 init1: 42 opt: 82 Z-score: 120.1 bits: 30.8 E(83265): 5.8 Smith-Waterman score: 82; 24.7% identity (50.6% similar) in 85 aa overlap (484-566:54-134) 460 470 480 490 500 510 ref|NP RKAYAALALEPDFGPLQVEPRQPPLGNHCIVWIPGLWRASMEALRYGCSIADSVTAV--F pdb|4D LMWSPVIAPGETVYYSVEYQGEYESLYTSHI...SS.CSLT.GPE--.DVT.DI..TVPY 520 530 540 550 560 570 ref|NP VLGDDDDPDAIRTAWDRLVGDHPGELELRLLESHFSSVIDPFCDYVVEQEELHPERTTTV pdb|4D N.RVRATLGSQTS..SI.--K..FNRQSTI.TRPGMEITKDGFHL.I.L.D.G.QFEFLV 580 590 600 610 ref|NP VMALVITRDWLDQTLLNQRAVYLFKALSGDYSRVFCVVRYYLAG pdb|4D AYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTECVEVQ >>pdb|3DTV|A Chain A, Crystal Structure Of (240 aa) initn: 48 init1: 48 opt: 82 Z-score: 118.2 bits: 30.6 E(83265): 7.4 Smith-Waterman score: 82; 28.5% identity (54.1% similar) in 172 aa overlap (200-364:13-171) 170 180 190 200 210 220 ref|NP LPTYAFVVMVALLILAGLKDLIFEHGFVPDMPPAVQAVQPLGWFLI--LRAFSSGCSAMT pdb|3D MQQASTPTIGMIV...AGL.PAD.AR.YPD.PFIA..----L 230 240 250 260 270 280 ref|NP GIESIA-NGVKVFQEPAVVNARRTLLVMGVLLAAMFLAVSGLGYMYGIAPNDRVTVLAQI pdb|3D .LG.VTPE.YDAVI.SV.DH...-.QKQ.A--.VVS.MGTS.SFYR.A.F.AAL..-.MR 290 300 310 320 330 340 ref|NP GSRAFGSGSVLLWALQ-LSTLLILVLAANTAFAG--FPRLAAMLAEDHCLPRQLSWIGDR pdb|3D EATGLPCTTMSTAV.NG.RA.GVRRV.LA..YIDDVNE....F...ESLV.T-----.C. 350 360 370 380 390 400 ref|NP LVYQNGIGVLLLV-TALIIVICKGDTTVAVNLYALGVFTAFTLSQLGLVRRWWRLRGNGW pdb|3D SLGIT.VEAMAR.D..TLVDL.VRAFEAAPDSDGILLSCGGLLTLDAIPEVERRLGVPVV >>pdb|3DTV|D Chain D, Crystal Structure Of (240 aa) initn: 48 init1: 48 opt: 82 Z-score: 118.2 bits: 30.6 E(83265): 7.4 Smith-Waterman score: 82; 28.5% identity (54.1% similar) in 172 aa overlap (200-364:13-171) 170 180 190 200 210 220 ref|NP LPTYAFVVMVALLILAGLKDLIFEHGFVPDMPPAVQAVQPLGWFLI--LRAFSSGCSAMT pdb|3D MQQASTPTIGMIV...AGL.PAD.AR.YPD.PFIA..----L 230 240 250 260 270 280 ref|NP GIESIA-NGVKVFQEPAVVNARRTLLVMGVLLAAMFLAVSGLGYMYGIAPNDRVTVLAQI pdb|3D .LG.VTPE.YDAVI.SV.DH...-.QKQ.A--.VVS.MGTS.SFYR.A.F.AAL..-.MR 290 300 310 320 330 340 ref|NP GSRAFGSGSVLLWALQ-LSTLLILVLAANTAFAG--FPRLAAMLAEDHCLPRQLSWIGDR pdb|3D EATGLPCTTMSTAV.NG.RA.GVRRV.LA..YIDDVNE....F...ESLV.T-----.C. 350 360 370 380 390 400 ref|NP LVYQNGIGVLLLV-TALIIVICKGDTTVAVNLYALGVFTAFTLSQLGLVRRWWRLRGNGW pdb|3D SLGIT.VEAMAR.D..TLVDL.VRAFEAAPDSDGILLSXGGLLTLDAIPEVERRLGVPVV >>pdb|3DG9|A Chain A, Crystal Structure Of (248 aa) initn: 48 init1: 48 opt: 82 Z-score: 117.8 bits: 30.6 E(83265): 7.8 Smith-Waterman score: 82; 28.5% identity (54.1% similar) in 172 aa overlap (200-364:13-171) 170 180 190 200 210 220 ref|NP LPTYAFVVMVALLILAGLKDLIFEHGFVPDMPPAVQAVQPLGWFLI--LRAFSSGCSAMT pdb|3D MQQASTPTIGMIV...AGL.PAD.AR.YPD.PFIA..----L 230 240 250 260 270 280 ref|NP GIESIA-NGVKVFQEPAVVNARRTLLVMGVLLAAMFLAVSGLGYMYGIAPNDRVTVLAQI pdb|3D .LG.VTPE.YDAVI.SV.DH...-.QKQ.A--.VVS.MGTS.SFYR.A.F.AAL..-.MR 290 300 310 320 330 340 ref|NP GSRAFGSGSVLLWALQ-LSTLLILVLAANTAFAG--FPRLAAMLAEDHCLPRQLSWIGDR pdb|3D EATGLPCTTMSTAV.NG.RA.GVRRV.LA..YIDDVNE....F...ESLV.T-----.C. 350 360 370 380 390 400 ref|NP LVYQNGIGVLLLV-TALIIVICKGDTTVAVNLYALGVFTAFTLSQLGLVRRWWRLRGNGW pdb|3D SLGIT.VEAMAR.D..TLVDL.VRAFEAAPDSDGILLSCGGLLTLDAIPEVERRLGVPVV >>pdb|2VLB|A Chain A, Structure Of Unligand (251 aa) initn: 48 init1: 48 opt: 82 Z-score: 117.7 bits: 30.6 E(83265): 7.9 Smith-Waterman score: 82; 28.5% identity (54.1% similar) in 172 aa overlap (200-364:15-173) 170 180 190 200 210 220 ref|NP LPTYAFVVMVALLILAGLKDLIFEHGFVPDMPPAVQAVQPLGWFLI--LRAFSSGCSAMT pdb|2V GQMQQASTPTIGMIV...AGL.PAD.AR.YPD.PFIA..----L 230 240 250 260 270 280 ref|NP GIESIA-NGVKVFQEPAVVNARRTLLVMGVLLAAMFLAVSGLGYMYGIAPNDRVTVLAQI pdb|2V .LG.VTPE.YDAVI.SV.DH...-.QKQ.A--.VVS.MGTS.SFYR.A.F.AAL..-.MR 290 300 310 320 330 340 ref|NP GSRAFGSGSVLLWALQ-LSTLLILVLAANTAFAG--FPRLAAMLAEDHCLPRQLSWIGDR pdb|2V EATGLPCTTMSTAV.NG.RA.GVRRV.LA..YIDDVNE....F...ESLV.T-----.C. 350 360 370 380 390 400 ref|NP LVYQNGIGVLLLV-TALIIVICKGDTTVAVNLYALGVFTAFTLSQLGLVRRWWRLRGNGW pdb|2V SLGIT.VEAMAR.D..TLVDL.VRAFEAAPDSDGILLSCGGLLTLDAIPEVERRLGVPVV 615 residues in 1 query sequences 20561802 residues in 83265 library sequences Tcomplib [36.3.6 Aug., 2014(preload9)] (4 proc) start: Tue May 24 13:20:47 2016 done: Tue May 24 13:20:48 2016 Total Scan time: 0.820 Total Display time: 0.040 Function used was FASTA [36.3.6 Aug., 2014(preload9)]