python2.7 $birch/script/phylcnv.py -inf pseq -outf pint sequential.phyl junk.pint
python2.7 $birch/script/phylcnv.py -inf pint -outf pint sample.pint junk.pint
python2.7 $birch/script/phylcnv.py -inf pint -outf pseq sample.pint junk.pseq
python2.7 $birch/script/phylcnv.py -inf pint -outf fasta sample.pint junk.fasta
python2.7 $birch/script/phylcnv.py -inf pint -outf flatdna sample.pint junk.flatdna
python2.7 $birch/script/phylcnv.py -inf pint -outf flatpro sample.pint junk.flatpro
python2.7 $birch/script/phylcnv.py -inf pint -outf flattext sample.pint junk.flattext