2022-03-24 16:41:58,324 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from jmx.acl.cfg 2022-03-24 16:41:58,369 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.config.cfg 2022-03-24 16:41:58,403 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.jaas.cfg 2022-03-24 16:41:58,438 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.shell.cfg 2022-03-24 16:41:58,478 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.ops4j.pax.url.mvn.cfg 2022-03-24 16:41:58,509 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.jaas.cfg 2022-03-24 16:41:58,552 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.feature.cfg 2022-03-24 16:41:58,583 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.bundle.cfg 2022-03-24 16:42:00,095 [activator-1-thread-2] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Adding features: cytoscape-karaf/[3.9.1,3.9.1],cytoscape-gui/[3.9.1,3.9.1] 2022-03-24 16:42:01,052 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Changes to perform: 2022-03-24 16:42:01,053 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Region: root 2022-03-24 16:42:01,053 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Bundles to install: 2022-03-24 16:42:01,053 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.activation/com.springsource.javax.activation/1.1.1 2022-03-24 16:42:01,053 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.xml.stream/com.springsource.javax.xml.stream/1.0.1 2022-03-24 16:42:01,053 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/edge-bundler-impl/3.9.1 2022-03-24 16:42:01,054 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.ws.rs/javax.ws.rs-api/2.1 2022-03-24 16:42:01,054 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.api/1.0.1 2022-03-24 16:42:01,054 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.cm/1.3.1 2022-03-24 16:42:01,054 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core/1.10.2 2022-03-24 16:42:01,054 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core.compatibility/1.0.0 2022-03-24 16:42:01,054 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.proxy/org.apache.aries.proxy/1.1.6 2022-03-24 16:42:01,055 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:commons-io/commons-io/2.1 2022-03-24 16:42:01,055 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.blueprintstate/4.2.8 2022-03-24 16:42:01,055 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.core/4.2.8 2022-03-24 16:42:01,055 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.blueprint/4.2.8 2022-03-24 16:42:01,056 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.features/4.2.8 2022-03-24 16:42:01,056 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.boot/4.2.8 2022-03-24 16:42:01,056 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.core/4.2.8 2022-03-24 16:42:01,056 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.features/org.apache.karaf.features.command/4.2.8 2022-03-24 16:42:01,057 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.instance/org.apache.karaf.instance.core/4.2.8 2022-03-24 16:42:01,057 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas.blueprint/org.apache.karaf.jaas.blueprint.config/4.2.8 2022-03-24 16:42:01,057 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.command/4.2.8 2022-03-24 16:42:01,057 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.config/4.2.8 2022-03-24 16:42:01,057 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.modules/4.2.8 2022-03-24 16:42:01,058 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.log/org.apache.karaf.log.core/4.2.8 2022-03-24 16:42:01,058 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.service/org.apache.karaf.service.core/4.2.8 2022-03-24 16:42:01,058 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.commands/4.2.8 2022-03-24 16:42:01,058 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.console/4.2.8 2022-03-24 16:42:01,058 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.core/4.2.8 2022-03-24 16:42:01,059 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.table/4.2.8 2022-03-24 16:42:01,059 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.system/org.apache.karaf.system.core/4.2.8 2022-03-24 16:42:01,059 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.jaxb-impl/2.1.6_1 2022-03-24 16:42:01,059 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.xmlbeans/2.4.0_5 2022-03-24 16:42:01,059 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-03-24 16:42:01,059 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-03-24 16:42:01,060 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-03-24 16:42:01,060 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-03-24 16:42:01,060 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/api-bundle/3.9.1 2022-03-24 16:42:01,060 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/app-impl/3.9.1 2022-03-24 16:42:01,060 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/application-impl/3.9.1 2022-03-24 16:42:01,061 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/application-metadata-impl/3.9.1 2022-03-24 16:42:01,061 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/cmdline/3.9.1 2022-03-24 16:42:01,061 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/cmdline-impl/3.9.1 2022-03-24 16:42:01,061 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/command-executor-impl/3.9.1 2022-03-24 16:42:01,061 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/core-task-impl/3.9.1 2022-03-24 16:42:01,061 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/custom-graphics-internal/3.9.1 2022-03-24 16:42:01,062 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/diagnostics-impl/3.9.1 2022-03-24 16:42:01,062 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/ding-presentation-impl/3.9.1 2022-03-24 16:42:01,062 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/editor-impl/3.9.1 2022-03-24 16:42:01,062 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-functions-impl/3.9.1 2022-03-24 16:42:01,062 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-impl/3.9.1 2022-03-24 16:42:01,062 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/event-impl/3.9.1 2022-03-24 16:42:01,063 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/filter2-impl/3.9.1 2022-03-24 16:42:01,063 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/graphml-impl/3.9.1 2022-03-24 16:42:01,063 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/group-impl/3.9.1 2022-03-24 16:42:01,063 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/gui-cmdline-parser-impl/3.9.1 2022-03-24 16:42:01,063 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/io-impl/3.9.1 2022-03-24 16:42:01,064 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/datasource-impl/3.9.1 2022-03-24 16:42:01,064 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/jobs-impl/3.9.1 2022-03-24 16:42:01,064 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-cytoscape-impl/3.9.1 2022-03-24 16:42:01,064 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-impl/3.9.1 2022-03-24 16:42:01,064 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-prefuse-impl/3.9.1 2022-03-24 16:42:01,064 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/linkout-impl/3.9.1 2022-03-24 16:42:01,065 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/manual-layout-impl/3.9.1 2022-03-24 16:42:01,065 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/model-impl/3.9.1 2022-03-24 16:42:01,065 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/presentation-impl/3.9.1 2022-03-24 16:42:01,065 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/property-impl/3.9.1 2022-03-24 16:42:01,065 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/scripting-impl/3.9.1 2022-03-24 16:42:01,065 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/search-impl/3.9.1 2022-03-24 16:42:01,066 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/session-impl/3.9.1 2022-03-24 16:42:01,066 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/splash-updater-impl/3.9.1 2022-03-24 16:42:01,066 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-application-impl/3.9.1 2022-03-24 16:42:01,066 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-util-impl/3.9.1 2022-03-24 16:42:01,067 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-browser-impl/3.9.1 2022-03-24 16:42:01,067 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-import-impl/3.9.1 2022-03-24 16:42:01,068 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-presentation-impl/3.9.1 2022-03-24 16:42:01,068 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/third-party/3.9.1 2022-03-24 16:42:01,068 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/util-impl/3.9.1 2022-03-24 16:42:01,068 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-impl/3.9.1 2022-03-24 16:42:01,069 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/viewmodel-impl/3.9.1 2022-03-24 16:42:01,069 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-core-impl/3.9.1 2022-03-24 16:42:01,069 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-impl/3.9.1 2022-03-24 16:42:01,069 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/webservice-impl/3.9.1 2022-03-24 16:42:01,070 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-impl/3.9.1 2022-03-24 16:42:01,070 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-swing-impl/3.9.1 2022-03-24 16:42:01,070 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-builtins/3.13.2 2022-03-24 16:42:01,070 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-reader/3.13.2 2022-03-24 16:42:01,071 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal/3.13.2 2022-03-24 16:42:01,071 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal-jansi/3.13.2 2022-03-24 16:42:01,071 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm/7.2 2022-03-24 16:42:01,071 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-commons/7.2 2022-03-24 16:42:01,071 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-tree/7.2 2022-03-24 16:42:01,072 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-analysis/7.2 2022-03-24 16:42:01,072 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-util/7.2 2022-03-24 16:42:01,072 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:cytoscape-temp/uk.ac.ebi.enfin.mi.cluster.micluster/1.6 2022-03-24 16:42:01,075 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Installing bundles: 2022-03-24 16:42:01,075 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.activation/com.springsource.javax.activation/1.1.1 2022-03-24 16:42:01,125 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.xml.stream/com.springsource.javax.xml.stream/1.0.1 2022-03-24 16:42:01,152 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/edge-bundler-impl/3.9.1 2022-03-24 16:42:01,184 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.ws.rs/javax.ws.rs-api/2.1 2022-03-24 16:42:01,228 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.api/1.0.1 2022-03-24 16:42:01,262 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.cm/1.3.1 2022-03-24 16:42:01,300 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core/1.10.2 2022-03-24 16:42:01,352 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core.compatibility/1.0.0 2022-03-24 16:42:01,402 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.proxy/org.apache.aries.proxy/1.1.6 2022-03-24 16:42:01,442 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:commons-io/commons-io/2.1 2022-03-24 16:42:01,480 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.blueprintstate/4.2.8 2022-03-24 16:42:01,518 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.core/4.2.8 2022-03-24 16:42:01,557 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.blueprint/4.2.8 2022-03-24 16:42:01,586 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.features/4.2.8 2022-03-24 16:42:01,617 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.boot/4.2.8 2022-03-24 16:42:01,647 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.core/4.2.8 2022-03-24 16:42:01,673 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.features/org.apache.karaf.features.command/4.2.8 2022-03-24 16:42:01,700 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.instance/org.apache.karaf.instance.core/4.2.8 2022-03-24 16:42:01,738 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas.blueprint/org.apache.karaf.jaas.blueprint.config/4.2.8 2022-03-24 16:42:01,760 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.command/4.2.8 2022-03-24 16:42:01,789 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.config/4.2.8 2022-03-24 16:42:01,813 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.modules/4.2.8 2022-03-24 16:42:01,887 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.log/org.apache.karaf.log.core/4.2.8 2022-03-24 16:42:01,919 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.service/org.apache.karaf.service.core/4.2.8 2022-03-24 16:42:01,949 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.commands/4.2.8 2022-03-24 16:42:01,976 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.console/4.2.8 2022-03-24 16:42:02,014 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.core/4.2.8 2022-03-24 16:42:02,057 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.table/4.2.8 2022-03-24 16:42:02,079 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.system/org.apache.karaf.system.core/4.2.8 2022-03-24 16:42:02,126 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.jaxb-impl/2.1.6_1 2022-03-24 16:42:02,175 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.xmlbeans/2.4.0_5 2022-03-24 16:42:02,267 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-03-24 16:42:02,293 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-03-24 16:42:02,318 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-03-24 16:42:02,345 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-03-24 16:42:02,367 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/api-bundle/3.9.1 2022-03-24 16:42:02,418 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/app-impl/3.9.1 2022-03-24 16:42:02,451 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/application-impl/3.9.1 2022-03-24 16:42:02,474 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/application-metadata-impl/3.9.1 2022-03-24 16:42:02,493 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/cmdline/3.9.1 2022-03-24 16:42:02,514 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/cmdline-impl/3.9.1 2022-03-24 16:42:02,537 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/command-executor-impl/3.9.1 2022-03-24 16:42:02,569 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/core-task-impl/3.9.1 2022-03-24 16:42:02,632 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/custom-graphics-internal/3.9.1 2022-03-24 16:42:02,673 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/diagnostics-impl/3.9.1 2022-03-24 16:42:02,694 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/ding-presentation-impl/3.9.1 2022-03-24 16:42:02,751 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/editor-impl/3.9.1 2022-03-24 16:42:02,777 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-functions-impl/3.9.1 2022-03-24 16:42:02,800 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-impl/3.9.1 2022-03-24 16:42:02,827 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/event-impl/3.9.1 2022-03-24 16:42:02,847 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/filter2-impl/3.9.1 2022-03-24 16:42:02,880 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/graphml-impl/3.9.1 2022-03-24 16:42:02,900 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/group-impl/3.9.1 2022-03-24 16:42:02,930 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/gui-cmdline-parser-impl/3.9.1 2022-03-24 16:42:02,952 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/io-impl/3.9.1 2022-03-24 16:42:02,991 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/datasource-impl/3.9.1 2022-03-24 16:42:03,014 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/jobs-impl/3.9.1 2022-03-24 16:42:03,037 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-cytoscape-impl/3.9.1 2022-03-24 16:42:03,068 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-impl/3.9.1 2022-03-24 16:42:03,090 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-prefuse-impl/3.9.1 2022-03-24 16:42:03,128 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/linkout-impl/3.9.1 2022-03-24 16:42:03,149 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/manual-layout-impl/3.9.1 2022-03-24 16:42:03,177 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/model-impl/3.9.1 2022-03-24 16:42:03,516 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/presentation-impl/3.9.1 2022-03-24 16:42:03,541 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/property-impl/3.9.1 2022-03-24 16:42:03,565 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/scripting-impl/3.9.1 2022-03-24 16:42:03,587 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/search-impl/3.9.1 2022-03-24 16:42:03,610 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/session-impl/3.9.1 2022-03-24 16:42:03,634 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/splash-updater-impl/3.9.1 2022-03-24 16:42:03,654 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-application-impl/3.9.1 2022-03-24 16:42:03,841 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-util-impl/3.9.1 2022-03-24 16:42:03,906 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-browser-impl/3.9.1 2022-03-24 16:42:03,941 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-import-impl/3.9.1 2022-03-24 16:42:04,281 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-presentation-impl/3.9.1 2022-03-24 16:42:04,336 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/third-party/3.9.1 2022-03-24 16:42:04,740 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/util-impl/3.9.1 2022-03-24 16:42:04,763 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-impl/3.9.1 2022-03-24 16:42:04,790 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/viewmodel-impl/3.9.1 2022-03-24 16:42:04,838 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-core-impl/3.9.1 2022-03-24 16:42:04,889 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-impl/3.9.1 2022-03-24 16:42:04,944 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/webservice-impl/3.9.1 2022-03-24 16:42:04,965 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-impl/3.9.1 2022-03-24 16:42:04,991 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-swing-impl/3.9.1 2022-03-24 16:42:05,020 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-builtins/3.13.2 2022-03-24 16:42:05,056 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-reader/3.13.2 2022-03-24 16:42:05,086 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal/3.13.2 2022-03-24 16:42:05,140 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal-jansi/3.13.2 2022-03-24 16:42:05,165 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm/7.2 2022-03-24 16:42:05,197 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-commons/7.2 2022-03-24 16:42:05,226 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-tree/7.2 2022-03-24 16:42:05,255 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-analysis/7.2 2022-03-24 16:42:05,282 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-util/7.2 2022-03-24 16:42:05,312 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:cytoscape-temp/uk.ac.ebi.enfin.mi.cluster.micluster/1.6 2022-03-24 16:42:06,754 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Starting bundles: 2022-03-24 16:42:06,757 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.splash-updater-impl/3.9.1 2022-03-24 16:42:06,771 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.diagnostics-impl/3.9.1 2022-03-24 16:42:06,784 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm/7.2.0 2022-03-24 16:42:06,790 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.tree/7.2.0 2022-03-24 16:42:06,795 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.commons/7.2.0 2022-03-24 16:42:06,800 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.tree.analysis/7.2.0 2022-03-24 16:42:06,805 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.util/7.2.0 2022-03-24 16:42:06,811 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.api/1.0.1 2022-03-24 16:42:06,816 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.proxy/1.1.6 2022-03-24 16:42:06,831 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.core/1.10.2 2022-03-24 16:42:06,886 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintExtender - No quiesce support is available, so blueprint components will not participate in quiesce operations 2022-03-24 16:42:07,087 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.aries.blueprint.core/1.10.2 has been started 2022-03-24 16:42:07,089 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.cm/1.3.1 2022-03-24 16:42:07,120 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.aries.blueprint.cm/1.3.1 has been started 2022-03-24 16:42:07,123 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.deployer.blueprint/4.2.8 2022-03-24 16:42:07,139 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.deployer.features/4.2.8 2022-03-24 16:42:07,162 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.terminal/3.13.2 2022-03-24 16:42:07,168 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.reader/3.13.2 2022-03-24 16:42:07,173 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.builtins/3.13.2 2022-03-24 16:42:07,178 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.core/4.2.8 2022-03-24 16:42:07,237 [features-3-thread-1] INFO org.apache.karaf.shell.impl.console.osgi.Activator - Not starting local console. To activate set karaf.startLocalConsole=true 2022-03-24 16:42:07,351 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.karaf.shell.core/4.2.8 has been started 2022-03-24 16:42:07,352 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.diagnostic.core/4.2.8 2022-03-24 16:42:07,384 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.diagnostic.core/4.2.8 2022-03-24 16:42:07,386 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.config/4.2.8 2022-03-24 16:42:07,405 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.modules/4.2.8 2022-03-24 16:42:07,425 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.log.core/4.2.8 2022-03-24 16:42:07,459 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.log.core/4.2.8 2022-03-24 16:42:07,460 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.system.core/4.2.8 2022-03-24 16:42:07,482 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.system.core/4.2.8 2022-03-24 16:42:07,483 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.bundle.core/4.2.8 2022-03-24 16:42:07,522 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.bundle.core/4.2.8 2022-03-24 16:42:07,524 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.features.command/4.2.8 2022-03-24 16:42:07,549 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.features.command/4.2.8 2022-03-24 16:42:07,551 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.instance.core/4.2.8 2022-03-24 16:42:07,585 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.instance.core/4.2.8 2022-03-24 16:42:07,586 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.commands/4.2.8 2022-03-24 16:42:07,608 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.shell.commands/4.2.8 2022-03-24 16:42:07,609 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.table/4.2.8 2022-03-24 16:42:07,613 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.command/4.2.8 2022-03-24 16:42:07,637 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-03-24 16:42:07,640 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Updating commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-03-24 16:42:07,643 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Updating commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-03-24 16:42:07,645 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.blueprint.config/4.2.8 2022-03-24 16:42:07,662 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.karaf.jaas.blueprint.config/4.2.8 has been started 2022-03-24 16:42:07,663 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.service.core/4.2.8 2022-03-24 16:42:07,678 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.service.core/4.2.8 2022-03-24 16:42:07,679 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.bundle.blueprintstate/4.2.8 2022-03-24 16:42:07,717 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - com.springsource.javax.activation/1.1.1 2022-03-24 16:42:07,723 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-03-24 16:42:07,742 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-03-24 16:42:07,760 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - com.springsource.javax.xml.stream/1.0.1 2022-03-24 16:42:07,766 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-03-24 16:42:07,785 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-03-24 16:42:07,802 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.bundles.xmlbeans/2.4.0.5 2022-03-24 16:42:07,808 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.bundles.jaxb-impl/2.1.6.1 2022-03-24 16:42:07,813 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - uk.ac.ebi.enfin.mi.cluster/1.6.0 2022-03-24 16:42:07,822 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.third-party/3.9.1 2022-03-24 16:42:07,831 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.commons.io/2.1.0 2022-03-24 16:42:07,840 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - javax.ws.rs-api/2.1.0 2022-03-24 16:42:07,846 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.api-bundle/3.9.1 2022-03-24 16:42:07,855 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.cmdline/3.9.1 2022-03-24 16:42:07,859 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.event-impl/3.9.1 2022-03-24 16:42:07,869 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.cmdline-impl/3.9.1 2022-03-24 16:42:07,876 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.property.internal/3.9.1 2022-03-24 16:42:07,938 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.util-impl/3.9.1 2022-03-24 16:42:07,955 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.io.datasource-impl/3.9.1 2022-03-24 16:42:07,976 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.equations-impl/3.9.1 2022-03-24 16:42:08,016 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.application-impl/3.9.1 2022-03-24 16:42:08,030 [features-3-thread-1] INFO org.cytoscape.application.userlog - Setting file directory = /home/psgendb/CytoscapeConfiguration 2022-03-24 16:42:08,032 [features-3-thread-1] INFO org.cytoscape.application.userlog - Write tracker.active.session into /home/psgendb/CytoscapeConfiguration 2022-03-24 16:42:08,047 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.swing-util-impl/3.9.1 2022-03-24 16:42:08,100 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.presentation-impl/3.9.1 2022-03-24 16:42:08,112 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.work-impl/3.9.1 2022-03-24 16:42:08,134 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.model-impl/3.9.1 2022-03-24 16:42:08,535 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.work-swing-impl/3.9.1 2022-03-24 16:42:08,579 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.viewmodel-impl/3.9.1 2022-03-24 16:42:08,630 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.view.vizmap-impl/3.9.1 2022-03-24 16:42:08,704 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-impl/3.9.1 2022-03-24 16:42:08,718 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.group-impl/3.9.1 2022-03-24 16:42:08,885 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.session-impl/3.9.1 2022-03-24 16:42:08,900 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.vizmap-gui-core-impl/3.9.1 2022-03-24 16:42:08,909 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.custom-graphics-internal/3.9.1 2022-03-24 16:42:09,071 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-presentation-impl/3.9.1 2022-03-24 16:42:09,151 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.ding-presentation-impl/3.9.1 2022-03-24 16:42:09,291 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.io-impl/3.9.1 2022-03-24 16:42:09,380 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.core-task-impl/3.9.1 2022-03-24 16:42:09,538 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.command-executor-impl/3.9.1 2022-03-24 16:42:09,595 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.swing-application-impl/3.9.1 2022-03-24 16:42:10,928 [features-3-thread-1] WARN org.cytoscape.application.userlog - The virtual key 'VK_?' does not exist. 2022-03-24 16:42:11,148 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.jobs-impl/3.9.1 2022-03-24 16:42:11,228 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-cytoscape-impl/3.9.1 2022-03-24 16:42:11,270 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-browser-impl/3.9.1 2022-03-24 16:42:11,551 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - edge-bundler/3.9.1 2022-03-24 16:42:11,562 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-prefuse-impl/3.9.1 2022-03-24 16:42:11,580 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.manual-layout-impl/3.9.1 2022-03-24 16:42:11,746 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-import-impl/3.9.1 2022-03-24 16:42:12,300 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.vizmap-gui-impl/3.9.1 2022-03-24 16:42:12,761 [features-3-thread-1] INFO org.cytoscape.application.userlog - CyNetwork w/ private tables created: ID = 2 2022-03-24 16:42:12,762 [features-3-thread-1] INFO org.cytoscape.application.userlog - CyNetwork w/ private tables created: Base Graph ID = 43 2022-03-24 16:42:13,077 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.graphml-impl/3.9.1 2022-03-24 16:42:13,091 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.linkout-impl/3.9.1 2022-03-24 16:42:13,134 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.editor-impl/3.9.1 2022-03-24 16:42:13,157 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.webservice-impl/3.9.1 2022-03-24 16:42:13,242 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.filter2-impl/3.9.1 2022-03-24 16:42:13,439 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.search-impl/3.9.1 2022-03-24 16:42:13,462 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.app-impl/3.9.1 2022-03-24 16:42:13,564 [pool-9-thread-1] INFO org.cytoscape.application.userlog - Server socket started on 127.0.0.1:2607 2022-03-24 16:42:13,586 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.scripting-impl/3.9.1 2022-03-24 16:42:13,613 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.cytoscape.scripting-impl/3.9.1 is waiting for namespace handlers [http://karaf.apache.org/xmlns/shell/v1.0.1, http://www.osgi.org/xmlns/blueprint/v1.0.1] 2022-03-24 16:42:13,615 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.gui-cmdline-parser-impl/3.9.1 2022-03-24 16:42:13,633 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.equations-functions-impl/3.9.1 2022-03-24 16:42:13,650 [features-3-thread-1] INFO org.apache.karaf.deployer.features.osgi.Activator - Deployment finished. Registering FeatureDeploymentListener 2022-03-24 16:42:15,464 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Done. 2022-03-24 16:42:15,593 [pool-8-thread-1] INFO org.cytoscape.io.webservice.biomart.rest.BiomartRestClient - Biomart Service URL is: http://www.ensembl.org/biomart/martservice 2022-03-24 16:42:15,644 [pool-8-thread-1] INFO org.cytoscape.application.userlog - New network import client registered: BioMart Client 2022-03-24 16:42:15,961 [pool-8-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-03-24 16:42:15,963 [pool-8-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-03-24 16:42:15,964 [pool-8-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-03-24 16:42:16,372 [pool-8-thread-1] INFO org.cytoscape.application.userlog - New network import client registered: Universal Interaction Database Client 2022-03-24 16:42:16,899 [Thread-17] ERROR org.cytoscape.opencl.layout.CyActivator - No OpenCL compatible device found. Cannot register 'Prefuse Force Directed OpenCL Layout'. 2022-03-24 16:42:17,021 [Task-Thread-1-Factory-0x14ea6a2d] INFO org.cytoscape.io.internal.read.GenericReaderManager - Filter returns Accepted. Need to check priority: org.cytoscape.io.internal.read.vizmap.VizmapXMLReaderFactory@648284ec 2022-03-24 16:42:17,022 [Task-Thread-1-Factory-0x14ea6a2d] INFO org.cytoscape.io.internal.read.GenericReaderManager - Successfully found compatible ReaderFactory org.cytoscape.io.internal.read.vizmap.VizmapXMLReaderFactory@648284ec 2022-03-24 16:42:17,036 [Task-Thread-3-Factory-0x14ea6a2d] INFO org.cytoscape.application.userlog - Custom Graphics Image property file loaded from: /home/psgendb/CytoscapeConfiguration/images3 2022-03-24 16:42:17,042 [Task-Thread-3-Factory-0x14ea6a2d] INFO org.cytoscape.application.userlog - Image loading process finished in 0.014 sec. 2022-03-24 16:42:17,043 [Task-Thread-3-Factory-0x14ea6a2d] INFO org.cytoscape.application.userlog - Currently, -1 images are available. 2022-03-24 16:42:17,771 [Task-Thread-3-Factory-0x14ea6a2d] INFO org.cytoscape.application.userlog - Image saving process finished in 0.745 sec. 2022-03-24 16:42:18,548 [pool-8-thread-1] INFO org.cytoscape.diffusion.internal.rest.RemoteLogger - No property set for cytoscape.remotelogging.senderaddressservicehostname; setting logger sender address service hostname to: http://35.197.44.209 2022-03-24 16:42:19,528 [pool-83-thread-1] INFO org.cytoscape.rest.internal.CyActivator - Initializing cyREST API server... 2022-03-24 16:42:21,487 [pool-83-thread-1] INFO org.apache.aries.spifly.BaseActivator - Examining bundle for SPI provider: org.eclipse.jetty.http 2022-03-24 16:42:21,490 [pool-83-thread-1] INFO org.apache.aries.spifly.BaseActivator - Found SPI resource: bundle://138.0:0/META-INF/services/org.eclipse.jetty.http.HttpFieldPreEncoder 2022-03-24 16:42:21,529 [pool-83-thread-1] INFO org.apache.aries.spifly.BaseActivator - Loaded SPI provider: class org.eclipse.jetty.http.Http1FieldPreEncoder 2022-03-24 16:42:21,532 [pool-83-thread-1] INFO org.apache.aries.spifly.BaseActivator - Registered service: org.apache.felix.framework.ServiceRegistrationImpl@460eb5c7 2022-03-24 16:42:21,532 [pool-83-thread-1] INFO org.apache.aries.spifly.BaseActivator - Registered provider: org.eclipse.jetty.http.HttpFieldPreEncoder in bundle org.eclipse.jetty.http 2022-03-24 16:42:22,590 [pool-83-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Command registration delayed for bundle org.apache.karaf.http.core/4.2.8. Missing service: [org.apache.karaf.http.core.ServletService, org.apache.karaf.http.core.ProxyService] 2022-03-24 16:42:22,929 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - Start Saving images to: /home/psgendb/CytoscapeConfiguration/images3 2022-03-24 16:42:22,932 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - ========== Image saving process finished ============= 2022-03-24 16:42:22,948 [Task-Thread-3-Factory-0x14ea6a2d] INFO org.cytoscape.application.userlog - Image saving process finished in 0.012 sec. 2022-03-24 16:42:22,951 [activator-1-thread-2] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.http.core/4.2.8 2022-03-24 16:42:22,961 [activator-1-thread-2] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.http.core/4.2.8 2022-03-24 16:42:22,995 [activator-1-thread-3] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.http.core/4.2.8 2022-03-24 16:42:23,046 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - #CiaoBello 2022-03-24 16:42:23,072 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.karaf.shell.core/4.2.8 2022-03-24 16:42:23,089 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.cytoscape.scripting-impl/3.9.1 2022-03-24 16:42:23,096 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.karaf.jaas.blueprint.config/4.2.8 2022-03-24 16:42:23,089 [pool-83-thread-1] ERROR org.cytoscape.rest.internal.CyActivator - Failed to initialize cyREST server. org.osgi.framework.BundleException: The framework has been shutdown. at org.apache.felix.framework.Felix.installBundle(Felix.java:2995) ~[?:?] at org.apache.felix.framework.BundleContextImpl.installBundle(BundleContextImpl.java:167) ~[?:?] at org.cytoscape.rest.internal.task.OSGiJAXRSManager.installBundleFromResource(OSGiJAXRSManager.java:266) ~[!/:?] at org.cytoscape.rest.internal.task.OSGiJAXRSManager.installBundlesFromResources(OSGiJAXRSManager.java:238) ~[!/:?] at org.cytoscape.rest.internal.task.OSGiJAXRSManager.installOSGiJAXRSBundles(OSGiJAXRSManager.java:127) ~[!/:?] at org.cytoscape.rest.internal.CyActivator.lambda$startCyREST$0(CyActivator.java:325) [!/:?] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515) [?:?] at java.util.concurrent.FutureTask.run(FutureTask.java:264) [?:?] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) [?:?] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) [?:?] at java.lang.Thread.run(Thread.java:834) [?:?] 2022-03-24 16:42:23,105 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.aries.blueprint.cm/1.3.1 2022-03-24 16:42:23,117 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.aries.blueprint.core/1.10.2 2022-03-24 16:42:23,166 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.http.core/4.2.8 2022-03-24 16:42:23,226 [FelixStartLevel] INFO org.apache.aries.spifly.BaseActivator - Unregistered: org.apache.felix.framework.ServiceRegistrationImpl@460eb5c7 2022-03-24 16:42:23,288 [FelixStartLevel] INFO org.cytoscape.cyndex2.internal.CyActivator - Shutting down CyNDEx-2... 2022-03-24 16:42:23,366 [FelixStartLevel] INFO org.cytoscape.rest.internal.CyActivator - Shutting down REST server... 2022-03-24 16:42:24,021 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.system.core/4.2.8 2022-03-24 16:42:24,028 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.diagnostic.core/4.2.8 2022-03-24 16:42:24,029 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.log.core/4.2.8 2022-03-24 16:42:24,030 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.bundle.core/4.2.8 2022-03-24 16:42:24,032 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.instance.core/4.2.8 2022-03-24 16:42:24,033 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.shell.commands/4.2.8 2022-03-24 16:42:24,034 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-03-24 16:42:24,035 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.features.command/4.2.8 2022-03-24 16:42:24,037 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.service.core/4.2.8 2022-03-24 17:07:30,077 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.jaas.cfg 2022-03-24 17:07:30,121 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.shell.cfg 2022-03-24 17:07:30,151 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.ops4j.pax.url.mvn.cfg 2022-03-24 17:07:30,192 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.jaas.cfg 2022-03-24 17:07:30,224 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.feature.cfg 2022-03-24 17:07:30,251 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.bundle.cfg 2022-03-24 17:07:31,593 [activator-1-thread-2] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Adding features: cytoscape-karaf/[3.9.1,3.9.1],cytoscape-gui/[3.9.1,3.9.1] 2022-03-24 17:07:32,368 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Changes to perform: 2022-03-24 17:07:32,368 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Region: root 2022-03-24 17:07:32,368 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Bundles to install: 2022-03-24 17:07:32,369 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.activation/com.springsource.javax.activation/1.1.1 2022-03-24 17:07:32,369 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.xml.stream/com.springsource.javax.xml.stream/1.0.1 2022-03-24 17:07:32,369 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/edge-bundler-impl/3.9.1 2022-03-24 17:07:32,369 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.ws.rs/javax.ws.rs-api/2.1 2022-03-24 17:07:32,369 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.api/1.0.1 2022-03-24 17:07:32,369 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.cm/1.3.1 2022-03-24 17:07:32,370 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core/1.10.2 2022-03-24 17:07:32,370 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core.compatibility/1.0.0 2022-03-24 17:07:32,370 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.proxy/org.apache.aries.proxy/1.1.6 2022-03-24 17:07:32,370 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:commons-io/commons-io/2.1 2022-03-24 17:07:32,370 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.blueprintstate/4.2.8 2022-03-24 17:07:32,371 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.core/4.2.8 2022-03-24 17:07:32,371 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.blueprint/4.2.8 2022-03-24 17:07:32,371 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.features/4.2.8 2022-03-24 17:07:32,371 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.boot/4.2.8 2022-03-24 17:07:32,371 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.core/4.2.8 2022-03-24 17:07:32,371 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.features/org.apache.karaf.features.command/4.2.8 2022-03-24 17:07:32,372 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.instance/org.apache.karaf.instance.core/4.2.8 2022-03-24 17:07:32,372 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas.blueprint/org.apache.karaf.jaas.blueprint.config/4.2.8 2022-03-24 17:07:32,372 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.command/4.2.8 2022-03-24 17:07:32,372 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.config/4.2.8 2022-03-24 17:07:32,372 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.modules/4.2.8 2022-03-24 17:07:32,373 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.log/org.apache.karaf.log.core/4.2.8 2022-03-24 17:07:32,373 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.service/org.apache.karaf.service.core/4.2.8 2022-03-24 17:07:32,373 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.commands/4.2.8 2022-03-24 17:07:32,373 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.console/4.2.8 2022-03-24 17:07:32,373 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.core/4.2.8 2022-03-24 17:07:32,374 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.table/4.2.8 2022-03-24 17:07:32,374 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.system/org.apache.karaf.system.core/4.2.8 2022-03-24 17:07:32,374 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.jaxb-impl/2.1.6_1 2022-03-24 17:07:32,374 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.xmlbeans/2.4.0_5 2022-03-24 17:07:32,374 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-03-24 17:07:32,374 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-03-24 17:07:32,375 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-03-24 17:07:32,375 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-03-24 17:07:32,375 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/api-bundle/3.9.1 2022-03-24 17:07:32,375 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/app-impl/3.9.1 2022-03-24 17:07:32,375 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/application-impl/3.9.1 2022-03-24 17:07:32,375 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/application-metadata-impl/3.9.1 2022-03-24 17:07:32,376 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/cmdline/3.9.1 2022-03-24 17:07:32,376 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/cmdline-impl/3.9.1 2022-03-24 17:07:32,376 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/command-executor-impl/3.9.1 2022-03-24 17:07:32,376 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/core-task-impl/3.9.1 2022-03-24 17:07:32,376 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/custom-graphics-internal/3.9.1 2022-03-24 17:07:32,376 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/diagnostics-impl/3.9.1 2022-03-24 17:07:32,377 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/ding-presentation-impl/3.9.1 2022-03-24 17:07:32,377 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/editor-impl/3.9.1 2022-03-24 17:07:32,377 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-functions-impl/3.9.1 2022-03-24 17:07:32,377 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-impl/3.9.1 2022-03-24 17:07:32,377 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/event-impl/3.9.1 2022-03-24 17:07:32,377 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/filter2-impl/3.9.1 2022-03-24 17:07:32,378 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/graphml-impl/3.9.1 2022-03-24 17:07:32,378 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/group-impl/3.9.1 2022-03-24 17:07:32,378 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/gui-cmdline-parser-impl/3.9.1 2022-03-24 17:07:32,378 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/io-impl/3.9.1 2022-03-24 17:07:32,378 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/datasource-impl/3.9.1 2022-03-24 17:07:32,379 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/jobs-impl/3.9.1 2022-03-24 17:07:32,379 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-cytoscape-impl/3.9.1 2022-03-24 17:07:32,379 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-impl/3.9.1 2022-03-24 17:07:32,379 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-prefuse-impl/3.9.1 2022-03-24 17:07:32,380 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/linkout-impl/3.9.1 2022-03-24 17:07:32,380 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/manual-layout-impl/3.9.1 2022-03-24 17:07:32,380 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/model-impl/3.9.1 2022-03-24 17:07:32,380 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/presentation-impl/3.9.1 2022-03-24 17:07:32,380 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/property-impl/3.9.1 2022-03-24 17:07:32,380 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/scripting-impl/3.9.1 2022-03-24 17:07:32,381 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/search-impl/3.9.1 2022-03-24 17:07:32,381 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/session-impl/3.9.1 2022-03-24 17:07:32,381 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/splash-updater-impl/3.9.1 2022-03-24 17:07:32,381 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-application-impl/3.9.1 2022-03-24 17:07:32,381 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-util-impl/3.9.1 2022-03-24 17:07:32,381 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-browser-impl/3.9.1 2022-03-24 17:07:32,381 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-import-impl/3.9.1 2022-03-24 17:07:32,382 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-presentation-impl/3.9.1 2022-03-24 17:07:32,382 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/third-party/3.9.1 2022-03-24 17:07:32,382 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/util-impl/3.9.1 2022-03-24 17:07:32,382 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-impl/3.9.1 2022-03-24 17:07:32,383 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/viewmodel-impl/3.9.1 2022-03-24 17:07:32,383 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-core-impl/3.9.1 2022-03-24 17:07:32,383 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-impl/3.9.1 2022-03-24 17:07:32,383 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/webservice-impl/3.9.1 2022-03-24 17:07:32,383 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-impl/3.9.1 2022-03-24 17:07:32,383 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-swing-impl/3.9.1 2022-03-24 17:07:32,383 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-builtins/3.13.2 2022-03-24 17:07:32,384 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-reader/3.13.2 2022-03-24 17:07:32,384 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal/3.13.2 2022-03-24 17:07:32,384 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal-jansi/3.13.2 2022-03-24 17:07:32,384 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm/7.2 2022-03-24 17:07:32,384 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-commons/7.2 2022-03-24 17:07:32,384 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-tree/7.2 2022-03-24 17:07:32,385 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-analysis/7.2 2022-03-24 17:07:32,385 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-util/7.2 2022-03-24 17:07:32,385 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:cytoscape-temp/uk.ac.ebi.enfin.mi.cluster.micluster/1.6 2022-03-24 17:07:32,388 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Installing bundles: 2022-03-24 17:07:32,388 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.activation/com.springsource.javax.activation/1.1.1 2022-03-24 17:07:32,421 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.xml.stream/com.springsource.javax.xml.stream/1.0.1 2022-03-24 17:07:32,452 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/edge-bundler-impl/3.9.1 2022-03-24 17:07:32,480 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.ws.rs/javax.ws.rs-api/2.1 2022-03-24 17:07:32,511 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.api/1.0.1 2022-03-24 17:07:32,558 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.cm/1.3.1 2022-03-24 17:07:32,583 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core/1.10.2 2022-03-24 17:07:32,622 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core.compatibility/1.0.0 2022-03-24 17:07:32,644 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.proxy/org.apache.aries.proxy/1.1.6 2022-03-24 17:07:32,672 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:commons-io/commons-io/2.1 2022-03-24 17:07:32,700 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.blueprintstate/4.2.8 2022-03-24 17:07:32,721 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.core/4.2.8 2022-03-24 17:07:32,748 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.blueprint/4.2.8 2022-03-24 17:07:32,772 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.features/4.2.8 2022-03-24 17:07:32,802 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.boot/4.2.8 2022-03-24 17:07:32,823 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.core/4.2.8 2022-03-24 17:07:32,845 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.features/org.apache.karaf.features.command/4.2.8 2022-03-24 17:07:32,869 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.instance/org.apache.karaf.instance.core/4.2.8 2022-03-24 17:07:32,897 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas.blueprint/org.apache.karaf.jaas.blueprint.config/4.2.8 2022-03-24 17:07:32,925 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.command/4.2.8 2022-03-24 17:07:32,958 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.config/4.2.8 2022-03-24 17:07:32,987 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.modules/4.2.8 2022-03-24 17:07:33,040 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.log/org.apache.karaf.log.core/4.2.8 2022-03-24 17:07:33,070 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.service/org.apache.karaf.service.core/4.2.8 2022-03-24 17:07:33,097 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.commands/4.2.8 2022-03-24 17:07:33,145 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.console/4.2.8 2022-03-24 17:07:33,176 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.core/4.2.8 2022-03-24 17:07:33,212 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.table/4.2.8 2022-03-24 17:07:33,233 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.system/org.apache.karaf.system.core/4.2.8 2022-03-24 17:07:33,267 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.jaxb-impl/2.1.6_1 2022-03-24 17:07:33,313 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.xmlbeans/2.4.0_5 2022-03-24 17:07:33,384 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-03-24 17:07:33,443 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-03-24 17:07:33,477 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-03-24 17:07:33,509 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-03-24 17:07:33,535 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/api-bundle/3.9.1 2022-03-24 17:07:33,614 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/app-impl/3.9.1 2022-03-24 17:07:33,647 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/application-impl/3.9.1 2022-03-24 17:07:33,669 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/application-metadata-impl/3.9.1 2022-03-24 17:07:33,693 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/cmdline/3.9.1 2022-03-24 17:07:33,721 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/cmdline-impl/3.9.1 2022-03-24 17:07:33,747 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/command-executor-impl/3.9.1 2022-03-24 17:07:33,776 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/core-task-impl/3.9.1 2022-03-24 17:07:33,826 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/custom-graphics-internal/3.9.1 2022-03-24 17:07:33,864 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/diagnostics-impl/3.9.1 2022-03-24 17:07:33,919 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/ding-presentation-impl/3.9.1 2022-03-24 17:07:33,967 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/editor-impl/3.9.1 2022-03-24 17:07:33,994 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-functions-impl/3.9.1 2022-03-24 17:07:34,017 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-impl/3.9.1 2022-03-24 17:07:34,045 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/event-impl/3.9.1 2022-03-24 17:07:34,069 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/filter2-impl/3.9.1 2022-03-24 17:07:34,103 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/graphml-impl/3.9.1 2022-03-24 17:07:34,128 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/group-impl/3.9.1 2022-03-24 17:07:34,154 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/gui-cmdline-parser-impl/3.9.1 2022-03-24 17:07:34,182 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/io-impl/3.9.1 2022-03-24 17:07:34,215 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/datasource-impl/3.9.1 2022-03-24 17:07:34,237 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/jobs-impl/3.9.1 2022-03-24 17:07:34,260 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-cytoscape-impl/3.9.1 2022-03-24 17:07:34,290 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-impl/3.9.1 2022-03-24 17:07:34,317 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-prefuse-impl/3.9.1 2022-03-24 17:07:34,341 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/linkout-impl/3.9.1 2022-03-24 17:07:34,365 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/manual-layout-impl/3.9.1 2022-03-24 17:07:34,393 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/model-impl/3.9.1 2022-03-24 17:07:34,621 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/presentation-impl/3.9.1 2022-03-24 17:07:34,642 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/property-impl/3.9.1 2022-03-24 17:07:34,670 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/scripting-impl/3.9.1 2022-03-24 17:07:34,696 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/search-impl/3.9.1 2022-03-24 17:07:34,728 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/session-impl/3.9.1 2022-03-24 17:07:34,757 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/splash-updater-impl/3.9.1 2022-03-24 17:07:34,782 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-application-impl/3.9.1 2022-03-24 17:07:34,867 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-util-impl/3.9.1 2022-03-24 17:07:34,896 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-browser-impl/3.9.1 2022-03-24 17:07:34,928 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-import-impl/3.9.1 2022-03-24 17:07:35,159 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-presentation-impl/3.9.1 2022-03-24 17:07:35,210 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/third-party/3.9.1 2022-03-24 17:07:35,506 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/util-impl/3.9.1 2022-03-24 17:07:35,530 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-impl/3.9.1 2022-03-24 17:07:35,571 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/viewmodel-impl/3.9.1 2022-03-24 17:07:35,611 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-core-impl/3.9.1 2022-03-24 17:07:35,633 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-impl/3.9.1 2022-03-24 17:07:35,671 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/webservice-impl/3.9.1 2022-03-24 17:07:35,697 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-impl/3.9.1 2022-03-24 17:07:35,720 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-swing-impl/3.9.1 2022-03-24 17:07:35,748 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-builtins/3.13.2 2022-03-24 17:07:35,779 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-reader/3.13.2 2022-03-24 17:07:35,806 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal/3.13.2 2022-03-24 17:07:35,840 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal-jansi/3.13.2 2022-03-24 17:07:35,863 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm/7.2 2022-03-24 17:07:35,891 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-commons/7.2 2022-03-24 17:07:35,919 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-tree/7.2 2022-03-24 17:07:35,942 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-analysis/7.2 2022-03-24 17:07:35,964 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-util/7.2 2022-03-24 17:07:35,986 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:cytoscape-temp/uk.ac.ebi.enfin.mi.cluster.micluster/1.6 2022-03-24 17:07:37,358 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Starting bundles: 2022-03-24 17:07:37,361 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.diagnostics-impl/3.9.1 2022-03-24 17:07:37,376 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.splash-updater-impl/3.9.1 2022-03-24 17:07:37,389 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.api/1.0.1 2022-03-24 17:07:37,394 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm/7.2.0 2022-03-24 17:07:37,399 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.tree/7.2.0 2022-03-24 17:07:37,404 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.commons/7.2.0 2022-03-24 17:07:37,409 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.proxy/1.1.6 2022-03-24 17:07:37,425 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.core/1.10.2 2022-03-24 17:07:37,514 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintExtender - No quiesce support is available, so blueprint components will not participate in quiesce operations 2022-03-24 17:07:37,706 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.aries.blueprint.core/1.10.2 has been started 2022-03-24 17:07:37,707 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.tree.analysis/7.2.0 2022-03-24 17:07:37,715 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.util/7.2.0 2022-03-24 17:07:37,745 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.cm/1.3.1 2022-03-24 17:07:37,791 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.aries.blueprint.cm/1.3.1 has been started 2022-03-24 17:07:37,793 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.deployer.blueprint/4.2.8 2022-03-24 17:07:37,809 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.deployer.features/4.2.8 2022-03-24 17:07:37,836 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.terminal/3.13.2 2022-03-24 17:07:37,842 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.reader/3.13.2 2022-03-24 17:07:37,848 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.builtins/3.13.2 2022-03-24 17:07:37,854 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.core/4.2.8 2022-03-24 17:07:37,918 [features-3-thread-1] INFO org.apache.karaf.shell.impl.console.osgi.Activator - Not starting local console. To activate set karaf.startLocalConsole=true 2022-03-24 17:07:38,029 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.karaf.shell.core/4.2.8 has been started 2022-03-24 17:07:38,029 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.bundle.core/4.2.8 2022-03-24 17:07:38,100 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.bundle.core/4.2.8 2022-03-24 17:07:38,103 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.bundle.blueprintstate/4.2.8 2022-03-24 17:07:38,137 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.config/4.2.8 2022-03-24 17:07:38,160 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.blueprint.config/4.2.8 2022-03-24 17:07:38,195 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.karaf.jaas.blueprint.config/4.2.8 has been started 2022-03-24 17:07:38,196 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.system.core/4.2.8 2022-03-24 17:07:38,223 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.system.core/4.2.8 2022-03-24 17:07:38,224 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.modules/4.2.8 2022-03-24 17:07:38,248 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.command/4.2.8 2022-03-24 17:07:38,281 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-03-24 17:07:38,283 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Updating commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-03-24 17:07:38,285 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Updating commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-03-24 17:07:38,286 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.features.command/4.2.8 2022-03-24 17:07:38,312 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.features.command/4.2.8 2022-03-24 17:07:38,313 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.table/4.2.8 2022-03-24 17:07:38,318 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.log.core/4.2.8 2022-03-24 17:07:38,345 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Command registration delayed for bundle org.apache.karaf.log.core/4.2.8. Missing service: [org.apache.karaf.log.core.LogEventFormatter] 2022-03-24 17:07:38,345 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.commands/4.2.8 2022-03-24 17:07:38,349 [activator-1-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.log.core/4.2.8 2022-03-24 17:07:38,369 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.shell.commands/4.2.8 2022-03-24 17:07:38,369 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.service.core/4.2.8 2022-03-24 17:07:38,385 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.service.core/4.2.8 2022-03-24 17:07:38,386 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.diagnostic.core/4.2.8 2022-03-24 17:07:38,400 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.diagnostic.core/4.2.8 2022-03-24 17:07:38,400 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.instance.core/4.2.8 2022-03-24 17:07:38,432 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.instance.core/4.2.8 2022-03-24 17:07:38,449 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - com.springsource.javax.activation/1.1.1 2022-03-24 17:07:38,454 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-03-24 17:07:38,472 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - com.springsource.javax.xml.stream/1.0.1 2022-03-24 17:07:38,478 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-03-24 17:07:38,495 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.bundles.jaxb-impl/2.1.6.1 2022-03-24 17:07:38,502 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - uk.ac.ebi.enfin.mi.cluster/1.6.0 2022-03-24 17:07:38,508 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.third-party/3.9.1 2022-03-24 17:07:38,516 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.bundles.xmlbeans/2.4.0.5 2022-03-24 17:07:38,521 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.commons.io/2.1.0 2022-03-24 17:07:38,528 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-03-24 17:07:38,549 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-03-24 17:07:38,572 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - javax.ws.rs-api/2.1.0 2022-03-24 17:07:38,579 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.cmdline/3.9.1 2022-03-24 17:07:38,585 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.api-bundle/3.9.1 2022-03-24 17:07:38,595 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.cmdline-impl/3.9.1 2022-03-24 17:07:38,603 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.event-impl/3.9.1 2022-03-24 17:07:38,614 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.property.internal/3.9.1 2022-03-24 17:07:38,669 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.util-impl/3.9.1 2022-03-24 17:07:38,687 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.io.datasource-impl/3.9.1 2022-03-24 17:07:38,705 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.equations-impl/3.9.1 2022-03-24 17:07:38,752 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.application-impl/3.9.1 2022-03-24 17:07:38,767 [features-3-thread-1] INFO org.cytoscape.application.userlog - Setting file directory = /home/psgendb/CytoscapeConfiguration 2022-03-24 17:07:38,769 [features-3-thread-1] INFO org.cytoscape.application.userlog - Write tracker.active.session into /home/psgendb/CytoscapeConfiguration 2022-03-24 17:07:38,783 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.swing-util-impl/3.9.1 2022-03-24 17:07:38,841 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.presentation-impl/3.9.1 2022-03-24 17:07:38,853 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.work-swing-impl/3.9.1 2022-03-24 17:07:38,904 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.model-impl/3.9.1 2022-03-24 17:07:39,291 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.work-impl/3.9.1 2022-03-24 17:07:39,310 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.viewmodel-impl/3.9.1 2022-03-24 17:07:39,369 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.view.vizmap-impl/3.9.1 2022-03-24 17:07:39,446 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-impl/3.9.1 2022-03-24 17:07:39,460 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.group-impl/3.9.1 2022-03-24 17:07:39,610 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.session-impl/3.9.1 2022-03-24 17:07:39,626 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.vizmap-gui-core-impl/3.9.1 2022-03-24 17:07:39,634 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.custom-graphics-internal/3.9.1 2022-03-24 17:07:39,792 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.ding-presentation-impl/3.9.1 2022-03-24 17:07:39,935 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-presentation-impl/3.9.1 2022-03-24 17:07:40,005 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.io-impl/3.9.1 2022-03-24 17:07:40,091 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.core-task-impl/3.9.1 2022-03-24 17:07:40,251 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.command-executor-impl/3.9.1 2022-03-24 17:07:40,325 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.swing-application-impl/3.9.1 2022-03-24 17:07:41,607 [features-3-thread-1] WARN org.cytoscape.application.userlog - The virtual key 'VK_?' does not exist. 2022-03-24 17:07:41,848 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.jobs-impl/3.9.1 2022-03-24 17:07:41,911 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-prefuse-impl/3.9.1 2022-03-24 17:07:41,925 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-import-impl/3.9.1 2022-03-24 17:07:42,392 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-browser-impl/3.9.1 2022-03-24 17:07:42,648 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - edge-bundler/3.9.1 2022-03-24 17:07:42,664 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.graphml-impl/3.9.1 2022-03-24 17:07:42,675 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.vizmap-gui-impl/3.9.1 2022-03-24 17:07:43,053 [features-3-thread-1] INFO org.cytoscape.application.userlog - CyNetwork w/ private tables created: ID = 2 2022-03-24 17:07:43,054 [features-3-thread-1] INFO org.cytoscape.application.userlog - CyNetwork w/ private tables created: Base Graph ID = 43 2022-03-24 17:07:43,339 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.filter2-impl/3.9.1 2022-03-24 17:07:43,540 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.search-impl/3.9.1 2022-03-24 17:07:43,564 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.editor-impl/3.9.1 2022-03-24 17:07:43,586 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-cytoscape-impl/3.9.1 2022-03-24 17:07:43,618 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.manual-layout-impl/3.9.1 2022-03-24 17:07:43,768 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.linkout-impl/3.9.1 2022-03-24 17:07:43,794 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.webservice-impl/3.9.1 2022-03-24 17:07:43,860 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.app-impl/3.9.1 2022-03-24 17:07:43,955 [pool-9-thread-1] INFO org.cytoscape.application.userlog - Server socket started on 127.0.0.1:2607 2022-03-24 17:07:43,969 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.scripting-impl/3.9.1 2022-03-24 17:07:43,992 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.cytoscape.scripting-impl/3.9.1 is waiting for namespace handlers [http://karaf.apache.org/xmlns/shell/v1.0.1, http://www.osgi.org/xmlns/blueprint/v1.0.1] 2022-03-24 17:07:43,993 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.gui-cmdline-parser-impl/3.9.1 2022-03-24 17:07:44,011 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.equations-functions-impl/3.9.1 2022-03-24 17:07:44,028 [features-3-thread-1] INFO org.apache.karaf.deployer.features.osgi.Activator - Deployment finished. Registering FeatureDeploymentListener 2022-03-24 17:07:45,321 [pool-8-thread-1] INFO org.cytoscape.io.webservice.biomart.rest.BiomartRestClient - Biomart Service URL is: http://www.ensembl.org/biomart/martservice 2022-03-24 17:07:45,369 [pool-8-thread-1] INFO org.cytoscape.application.userlog - New network import client registered: BioMart Client 2022-03-24 17:07:45,414 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Done. 2022-03-24 17:07:45,684 [pool-8-thread-1] INFO org.cytoscape.application.userlog - New network import client registered: Universal Interaction Database Client 2022-03-24 17:07:46,376 [Thread-17] ERROR org.cytoscape.opencl.layout.CyActivator - No OpenCL compatible device found. Cannot register 'Prefuse Force Directed OpenCL Layout'. 2022-03-24 17:07:46,846 [pool-8-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-03-24 17:07:46,848 [pool-8-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-03-24 17:07:46,850 [pool-8-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-03-24 17:07:47,023 [Task-Thread-1-Factory-0x700258c1] INFO org.cytoscape.io.internal.read.GenericReaderManager - Filter returns Accepted. Need to check priority: org.cytoscape.io.internal.read.vizmap.VizmapXMLReaderFactory@1bd2fc30 2022-03-24 17:07:47,024 [Task-Thread-1-Factory-0x700258c1] INFO org.cytoscape.io.internal.read.GenericReaderManager - Successfully found compatible ReaderFactory org.cytoscape.io.internal.read.vizmap.VizmapXMLReaderFactory@1bd2fc30 2022-03-24 17:07:47,036 [Task-Thread-3-Factory-0x700258c1] INFO org.cytoscape.application.userlog - Custom Graphics Image property file loaded from: /home/psgendb/CytoscapeConfiguration/images3 2022-03-24 17:07:47,042 [Task-Thread-3-Factory-0x700258c1] INFO org.cytoscape.application.userlog - Image loading process finished in 0.01 sec. 2022-03-24 17:07:47,043 [Task-Thread-3-Factory-0x700258c1] INFO org.cytoscape.application.userlog - Currently, -1 images are available. 2022-03-24 17:07:47,600 [Task-Thread-3-Factory-0x700258c1] INFO org.cytoscape.application.userlog - Image saving process finished in 0.57 sec. 2022-03-24 17:07:47,910 [pool-8-thread-1] INFO org.cytoscape.diffusion.internal.rest.RemoteLogger - No property set for cytoscape.remotelogging.senderaddressservicehostname; setting logger sender address service hostname to: http://35.197.44.209 2022-03-24 17:07:49,355 [pool-83-thread-1] INFO org.cytoscape.rest.internal.CyActivator - Initializing cyREST API server... 2022-03-24 17:07:51,168 [pool-83-thread-1] INFO org.apache.aries.spifly.BaseActivator - Examining bundle for SPI provider: org.eclipse.jetty.http 2022-03-24 17:07:51,171 [pool-83-thread-1] INFO org.apache.aries.spifly.BaseActivator - Found SPI resource: bundle://138.0:0/META-INF/services/org.eclipse.jetty.http.HttpFieldPreEncoder 2022-03-24 17:07:51,212 [pool-83-thread-1] INFO org.apache.aries.spifly.BaseActivator - Loaded SPI provider: class org.eclipse.jetty.http.Http1FieldPreEncoder 2022-03-24 17:07:51,215 [pool-83-thread-1] INFO org.apache.aries.spifly.BaseActivator - Registered service: org.apache.felix.framework.ServiceRegistrationImpl@999d2be 2022-03-24 17:07:51,215 [pool-83-thread-1] INFO org.apache.aries.spifly.BaseActivator - Registered provider: org.eclipse.jetty.http.HttpFieldPreEncoder in bundle org.eclipse.jetty.http 2022-03-24 17:07:52,072 [pool-83-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Command registration delayed for bundle org.apache.karaf.http.core/4.2.8. Missing service: [org.apache.karaf.http.core.ServletService, org.apache.karaf.http.core.ProxyService] 2022-03-24 17:07:52,423 [activator-1-thread-2] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.http.core/4.2.8 2022-03-24 17:07:52,431 [activator-1-thread-2] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.http.core/4.2.8 2022-03-24 17:07:52,465 [activator-1-thread-3] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.http.core/4.2.8 2022-03-24 17:07:54,546 [pool-83-thread-1] INFO org.cytoscape.rest.internal.task.ResourceManager - ========== Cytoscape RESTful API registered core resources in (888) milliseconds. 2022-03-24 17:07:54,547 [pool-83-thread-1] INFO org.cytoscape.rest.internal.CyActivator - cyREST API Server initialized in 5192msec 2022-03-24 17:19:19,739 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - Start Saving images to: /home/psgendb/CytoscapeConfiguration/images3 2022-03-24 17:19:19,758 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - ========== Image saving process finished ============= 2022-03-24 17:19:19,778 [Task-Thread-5-Factory-0x700258c1] INFO org.cytoscape.application.userlog - Image saving process finished in 0.014 sec. 2022-03-24 17:19:19,850 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - #CiaoBello 2022-03-24 17:19:19,880 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.karaf.shell.core/4.2.8 2022-03-24 17:19:19,895 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.cytoscape.scripting-impl/3.9.1 2022-03-24 17:19:19,902 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.karaf.jaas.blueprint.config/4.2.8 2022-03-24 17:19:19,911 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.aries.blueprint.cm/1.3.1 2022-03-24 17:19:19,922 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.aries.blueprint.core/1.10.2 2022-03-24 17:19:20,076 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.http.core/4.2.8 2022-03-24 17:19:20,202 [FelixStartLevel] INFO org.apache.aries.spifly.BaseActivator - Unregistered: org.apache.felix.framework.ServiceRegistrationImpl@999d2be 2022-03-24 17:19:20,270 [FelixStartLevel] INFO org.cytoscape.cyndex2.internal.CyActivator - Shutting down CyNDEx-2... 2022-03-24 17:19:20,314 [FelixStartLevel] INFO org.cytoscape.rest.internal.CyActivator - Shutting down REST server... 2022-03-24 17:19:21,359 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.system.core/4.2.8 2022-03-24 17:19:21,364 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.service.core/4.2.8 2022-03-24 17:19:21,364 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.diagnostic.core/4.2.8 2022-03-24 17:19:21,365 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-03-24 17:19:21,366 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.instance.core/4.2.8 2022-03-24 17:19:21,368 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.features.command/4.2.8 2022-03-24 17:19:21,369 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.bundle.core/4.2.8 2022-03-24 17:19:21,370 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.log.core/4.2.8 2022-03-24 17:19:21,371 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.shell.commands/4.2.8