2022-04-03 16:16:53,176 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.config.cfg 2022-04-03 16:16:53,223 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.jaas.cfg 2022-04-03 16:16:53,313 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.shell.cfg 2022-04-03 16:16:53,383 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.ops4j.pax.url.mvn.cfg 2022-04-03 16:16:53,417 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.jaas.cfg 2022-04-03 16:16:53,449 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.feature.cfg 2022-04-03 16:16:53,484 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.bundle.cfg 2022-04-03 16:16:54,932 [activator-1-thread-2] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Adding features: cytoscape-karaf/[3.9.1,3.9.1],cytoscape-gui/[3.9.1,3.9.1] 2022-04-03 16:16:55,700 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Changes to perform: 2022-04-03 16:16:55,700 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Region: root 2022-04-03 16:16:55,700 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Bundles to install: 2022-04-03 16:16:55,701 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.activation/com.springsource.javax.activation/1.1.1 2022-04-03 16:16:55,701 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.xml.stream/com.springsource.javax.xml.stream/1.0.1 2022-04-03 16:16:55,701 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/edge-bundler-impl/3.9.1 2022-04-03 16:16:55,701 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.ws.rs/javax.ws.rs-api/2.1 2022-04-03 16:16:55,701 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.api/1.0.1 2022-04-03 16:16:55,701 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.cm/1.3.1 2022-04-03 16:16:55,702 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core/1.10.2 2022-04-03 16:16:55,702 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core.compatibility/1.0.0 2022-04-03 16:16:55,702 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.proxy/org.apache.aries.proxy/1.1.6 2022-04-03 16:16:55,702 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:commons-io/commons-io/2.1 2022-04-03 16:16:55,702 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.blueprintstate/4.2.8 2022-04-03 16:16:55,702 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.core/4.2.8 2022-04-03 16:16:55,703 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.blueprint/4.2.8 2022-04-03 16:16:55,703 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.features/4.2.8 2022-04-03 16:16:55,703 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.boot/4.2.8 2022-04-03 16:16:55,703 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 16:16:55,703 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.features/org.apache.karaf.features.command/4.2.8 2022-04-03 16:16:55,704 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.instance/org.apache.karaf.instance.core/4.2.8 2022-04-03 16:16:55,704 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas.blueprint/org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 16:16:55,704 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:16:55,704 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.config/4.2.8 2022-04-03 16:16:55,704 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.modules/4.2.8 2022-04-03 16:16:55,704 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.log/org.apache.karaf.log.core/4.2.8 2022-04-03 16:16:55,705 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.service/org.apache.karaf.service.core/4.2.8 2022-04-03 16:16:55,705 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.commands/4.2.8 2022-04-03 16:16:55,705 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.console/4.2.8 2022-04-03 16:16:55,705 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.core/4.2.8 2022-04-03 16:16:55,705 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.table/4.2.8 2022-04-03 16:16:55,705 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.system/org.apache.karaf.system.core/4.2.8 2022-04-03 16:16:55,706 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.jaxb-impl/2.1.6_1 2022-04-03 16:16:55,706 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.xmlbeans/2.4.0_5 2022-04-03 16:16:55,706 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-04-03 16:16:55,706 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-04-03 16:16:55,706 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-04-03 16:16:55,706 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-04-03 16:16:55,707 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/api-bundle/3.9.1 2022-04-03 16:16:55,707 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/app-impl/3.9.1 2022-04-03 16:16:55,707 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/application-impl/3.9.1 2022-04-03 16:16:55,707 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/application-metadata-impl/3.9.1 2022-04-03 16:16:55,707 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/cmdline/3.9.1 2022-04-03 16:16:55,707 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/cmdline-impl/3.9.1 2022-04-03 16:16:55,708 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/command-executor-impl/3.9.1 2022-04-03 16:16:55,708 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/core-task-impl/3.9.1 2022-04-03 16:16:55,708 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/custom-graphics-internal/3.9.1 2022-04-03 16:16:55,708 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/diagnostics-impl/3.9.1 2022-04-03 16:16:55,708 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/ding-presentation-impl/3.9.1 2022-04-03 16:16:55,708 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/editor-impl/3.9.1 2022-04-03 16:16:55,709 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-functions-impl/3.9.1 2022-04-03 16:16:55,709 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-impl/3.9.1 2022-04-03 16:16:55,709 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/event-impl/3.9.1 2022-04-03 16:16:55,709 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/filter2-impl/3.9.1 2022-04-03 16:16:55,709 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/graphml-impl/3.9.1 2022-04-03 16:16:55,709 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/group-impl/3.9.1 2022-04-03 16:16:55,710 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/gui-cmdline-parser-impl/3.9.1 2022-04-03 16:16:55,710 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/io-impl/3.9.1 2022-04-03 16:16:55,710 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/datasource-impl/3.9.1 2022-04-03 16:16:55,710 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/jobs-impl/3.9.1 2022-04-03 16:16:55,710 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-cytoscape-impl/3.9.1 2022-04-03 16:16:55,711 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-impl/3.9.1 2022-04-03 16:16:55,711 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-prefuse-impl/3.9.1 2022-04-03 16:16:55,711 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/linkout-impl/3.9.1 2022-04-03 16:16:55,711 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/manual-layout-impl/3.9.1 2022-04-03 16:16:55,711 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/model-impl/3.9.1 2022-04-03 16:16:55,711 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/presentation-impl/3.9.1 2022-04-03 16:16:55,711 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/property-impl/3.9.1 2022-04-03 16:16:55,712 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/scripting-impl/3.9.1 2022-04-03 16:16:55,712 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/search-impl/3.9.1 2022-04-03 16:16:55,712 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/session-impl/3.9.1 2022-04-03 16:16:55,712 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/splash-updater-impl/3.9.1 2022-04-03 16:16:55,712 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-application-impl/3.9.1 2022-04-03 16:16:55,712 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-util-impl/3.9.1 2022-04-03 16:16:55,713 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-browser-impl/3.9.1 2022-04-03 16:16:55,713 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-import-impl/3.9.1 2022-04-03 16:16:55,713 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-presentation-impl/3.9.1 2022-04-03 16:16:55,713 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/third-party/3.9.1 2022-04-03 16:16:55,713 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/util-impl/3.9.1 2022-04-03 16:16:55,713 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-impl/3.9.1 2022-04-03 16:16:55,714 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/viewmodel-impl/3.9.1 2022-04-03 16:16:55,714 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-core-impl/3.9.1 2022-04-03 16:16:55,714 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-impl/3.9.1 2022-04-03 16:16:55,714 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/webservice-impl/3.9.1 2022-04-03 16:16:55,714 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-impl/3.9.1 2022-04-03 16:16:55,714 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-swing-impl/3.9.1 2022-04-03 16:16:55,714 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-builtins/3.13.2 2022-04-03 16:16:55,715 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-reader/3.13.2 2022-04-03 16:16:55,715 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal/3.13.2 2022-04-03 16:16:55,715 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal-jansi/3.13.2 2022-04-03 16:16:55,715 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm/7.2 2022-04-03 16:16:55,716 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-commons/7.2 2022-04-03 16:16:55,716 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-tree/7.2 2022-04-03 16:16:55,716 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-analysis/7.2 2022-04-03 16:16:55,716 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-util/7.2 2022-04-03 16:16:55,716 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:cytoscape-temp/uk.ac.ebi.enfin.mi.cluster.micluster/1.6 2022-04-03 16:16:55,720 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Installing bundles: 2022-04-03 16:16:55,720 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.activation/com.springsource.javax.activation/1.1.1 2022-04-03 16:16:55,757 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.xml.stream/com.springsource.javax.xml.stream/1.0.1 2022-04-03 16:16:55,783 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/edge-bundler-impl/3.9.1 2022-04-03 16:16:55,810 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.ws.rs/javax.ws.rs-api/2.1 2022-04-03 16:16:55,841 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.api/1.0.1 2022-04-03 16:16:55,874 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.cm/1.3.1 2022-04-03 16:16:55,901 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core/1.10.2 2022-04-03 16:16:55,944 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core.compatibility/1.0.0 2022-04-03 16:16:55,971 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.proxy/org.apache.aries.proxy/1.1.6 2022-04-03 16:16:56,005 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:commons-io/commons-io/2.1 2022-04-03 16:16:56,039 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.blueprintstate/4.2.8 2022-04-03 16:16:56,062 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.core/4.2.8 2022-04-03 16:16:56,100 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.blueprint/4.2.8 2022-04-03 16:16:56,126 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.features/4.2.8 2022-04-03 16:16:56,154 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.boot/4.2.8 2022-04-03 16:16:56,181 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 16:16:56,210 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.features/org.apache.karaf.features.command/4.2.8 2022-04-03 16:16:56,237 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.instance/org.apache.karaf.instance.core/4.2.8 2022-04-03 16:16:56,270 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas.blueprint/org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 16:16:56,297 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:16:56,323 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.config/4.2.8 2022-04-03 16:16:56,352 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.modules/4.2.8 2022-04-03 16:16:56,406 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.log/org.apache.karaf.log.core/4.2.8 2022-04-03 16:16:56,437 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.service/org.apache.karaf.service.core/4.2.8 2022-04-03 16:16:56,462 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.commands/4.2.8 2022-04-03 16:16:56,510 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.console/4.2.8 2022-04-03 16:16:56,552 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.core/4.2.8 2022-04-03 16:16:56,589 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.table/4.2.8 2022-04-03 16:16:56,620 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.system/org.apache.karaf.system.core/4.2.8 2022-04-03 16:16:56,660 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.jaxb-impl/2.1.6_1 2022-04-03 16:16:56,707 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.xmlbeans/2.4.0_5 2022-04-03 16:16:56,777 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-04-03 16:16:56,806 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-04-03 16:16:56,835 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-04-03 16:16:56,862 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-04-03 16:16:56,890 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/api-bundle/3.9.1 2022-04-03 16:16:56,939 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/app-impl/3.9.1 2022-04-03 16:16:56,974 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/application-impl/3.9.1 2022-04-03 16:16:57,000 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/application-metadata-impl/3.9.1 2022-04-03 16:16:57,028 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/cmdline/3.9.1 2022-04-03 16:16:57,052 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/cmdline-impl/3.9.1 2022-04-03 16:16:57,079 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/command-executor-impl/3.9.1 2022-04-03 16:16:57,109 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/core-task-impl/3.9.1 2022-04-03 16:16:57,159 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/custom-graphics-internal/3.9.1 2022-04-03 16:16:57,201 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/diagnostics-impl/3.9.1 2022-04-03 16:16:57,226 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/ding-presentation-impl/3.9.1 2022-04-03 16:16:57,274 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/editor-impl/3.9.1 2022-04-03 16:16:57,308 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-functions-impl/3.9.1 2022-04-03 16:16:57,330 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-impl/3.9.1 2022-04-03 16:16:57,366 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/event-impl/3.9.1 2022-04-03 16:16:57,392 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/filter2-impl/3.9.1 2022-04-03 16:16:57,430 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/graphml-impl/3.9.1 2022-04-03 16:16:57,484 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/group-impl/3.9.1 2022-04-03 16:16:57,516 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/gui-cmdline-parser-impl/3.9.1 2022-04-03 16:16:57,542 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/io-impl/3.9.1 2022-04-03 16:16:57,578 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/datasource-impl/3.9.1 2022-04-03 16:16:57,604 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/jobs-impl/3.9.1 2022-04-03 16:16:57,631 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-cytoscape-impl/3.9.1 2022-04-03 16:16:57,659 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-impl/3.9.1 2022-04-03 16:16:57,686 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-prefuse-impl/3.9.1 2022-04-03 16:16:57,715 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/linkout-impl/3.9.1 2022-04-03 16:16:57,740 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/manual-layout-impl/3.9.1 2022-04-03 16:16:57,771 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/model-impl/3.9.1 2022-04-03 16:16:58,003 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/presentation-impl/3.9.1 2022-04-03 16:16:58,038 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/property-impl/3.9.1 2022-04-03 16:16:58,069 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/scripting-impl/3.9.1 2022-04-03 16:16:58,093 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/search-impl/3.9.1 2022-04-03 16:16:58,118 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/session-impl/3.9.1 2022-04-03 16:16:58,141 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/splash-updater-impl/3.9.1 2022-04-03 16:16:58,165 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-application-impl/3.9.1 2022-04-03 16:16:58,256 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-util-impl/3.9.1 2022-04-03 16:16:58,287 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-browser-impl/3.9.1 2022-04-03 16:16:58,319 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-import-impl/3.9.1 2022-04-03 16:16:58,556 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-presentation-impl/3.9.1 2022-04-03 16:16:58,601 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/third-party/3.9.1 2022-04-03 16:16:58,916 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/util-impl/3.9.1 2022-04-03 16:16:58,948 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-impl/3.9.1 2022-04-03 16:16:58,978 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/viewmodel-impl/3.9.1 2022-04-03 16:16:59,035 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-core-impl/3.9.1 2022-04-03 16:16:59,069 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-impl/3.9.1 2022-04-03 16:16:59,110 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/webservice-impl/3.9.1 2022-04-03 16:16:59,138 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-impl/3.9.1 2022-04-03 16:16:59,168 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-swing-impl/3.9.1 2022-04-03 16:16:59,201 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-builtins/3.13.2 2022-04-03 16:16:59,242 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-reader/3.13.2 2022-04-03 16:16:59,281 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal/3.13.2 2022-04-03 16:16:59,319 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal-jansi/3.13.2 2022-04-03 16:16:59,350 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm/7.2 2022-04-03 16:16:59,386 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-commons/7.2 2022-04-03 16:16:59,419 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-tree/7.2 2022-04-03 16:16:59,447 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-analysis/7.2 2022-04-03 16:16:59,476 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-util/7.2 2022-04-03 16:16:59,505 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:cytoscape-temp/uk.ac.ebi.enfin.mi.cluster.micluster/1.6 2022-04-03 16:17:01,139 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Starting bundles: 2022-04-03 16:17:01,144 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.diagnostics-impl/3.9.1 2022-04-03 16:17:01,165 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.splash-updater-impl/3.9.1 2022-04-03 16:17:01,185 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm/7.2.0 2022-04-03 16:17:01,196 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.api/1.0.1 2022-04-03 16:17:01,204 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.tree/7.2.0 2022-04-03 16:17:01,212 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.commons/7.2.0 2022-04-03 16:17:01,222 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.proxy/1.1.6 2022-04-03 16:17:01,243 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.core/1.10.2 2022-04-03 16:17:01,309 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintExtender - No quiesce support is available, so blueprint components will not participate in quiesce operations 2022-04-03 16:17:01,517 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.aries.blueprint.core/1.10.2 has been started 2022-04-03 16:17:01,517 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.cm/1.3.1 2022-04-03 16:17:01,544 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.aries.blueprint.cm/1.3.1 has been started 2022-04-03 16:17:01,545 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.tree.analysis/7.2.0 2022-04-03 16:17:01,553 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.util/7.2.0 2022-04-03 16:17:01,563 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.deployer.blueprint/4.2.8 2022-04-03 16:17:01,582 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.deployer.features/4.2.8 2022-04-03 16:17:01,606 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.terminal/3.13.2 2022-04-03 16:17:01,612 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.reader/3.13.2 2022-04-03 16:17:01,619 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.builtins/3.13.2 2022-04-03 16:17:01,629 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.core/4.2.8 2022-04-03 16:17:02,152 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.karaf.shell.core/4.2.8 has been started 2022-04-03 16:17:02,153 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 16:17:02,189 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 16:17:02,191 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.log.core/4.2.8 2022-04-03 16:17:02,231 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.log.core/4.2.8 2022-04-03 16:17:02,231 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.config/4.2.8 2022-04-03 16:17:02,250 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 16:17:02,273 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.karaf.jaas.blueprint.config/4.2.8 has been started 2022-04-03 16:17:02,274 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.service.core/4.2.8 2022-04-03 16:17:02,294 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.service.core/4.2.8 2022-04-03 16:17:02,295 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.modules/4.2.8 2022-04-03 16:17:02,314 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.features.command/4.2.8 2022-04-03 16:17:02,346 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.features.command/4.2.8 2022-04-03 16:17:02,348 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.instance.core/4.2.8 2022-04-03 16:17:02,397 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.instance.core/4.2.8 2022-04-03 16:17:02,399 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.table/4.2.8 2022-04-03 16:17:02,404 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.commands/4.2.8 2022-04-03 16:17:02,429 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.shell.commands/4.2.8 2022-04-03 16:17:02,430 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.system.core/4.2.8 2022-04-03 16:17:02,451 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.system.core/4.2.8 2022-04-03 16:17:02,452 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.bundle.core/4.2.8 2022-04-03 16:17:02,492 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.bundle.core/4.2.8 2022-04-03 16:17:02,493 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.bundle.blueprintstate/4.2.8 2022-04-03 16:17:02,516 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:17:02,542 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:17:02,543 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Updating commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:17:02,546 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Updating commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:17:02,565 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-04-03 16:17:02,592 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - com.springsource.javax.xml.stream/1.0.1 2022-04-03 16:17:02,600 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.bundles.xmlbeans/2.4.0.5 2022-04-03 16:17:02,606 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - com.springsource.javax.activation/1.1.1 2022-04-03 16:17:02,612 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-04-03 16:17:02,628 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.bundles.jaxb-impl/2.1.6.1 2022-04-03 16:17:02,634 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - uk.ac.ebi.enfin.mi.cluster/1.6.0 2022-04-03 16:17:02,640 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.third-party/3.9.1 2022-04-03 16:17:02,648 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.commons.io/2.1.0 2022-04-03 16:17:02,654 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-04-03 16:17:02,677 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-04-03 16:17:02,697 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - javax.ws.rs-api/2.1.0 2022-04-03 16:17:02,705 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.cmdline/3.9.1 2022-04-03 16:17:02,710 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.api-bundle/3.9.1 2022-04-03 16:17:02,721 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.cmdline-impl/3.9.1 2022-04-03 16:17:02,733 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.event-impl/3.9.1 2022-04-03 16:17:02,744 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.property.internal/3.9.1 2022-04-03 16:17:02,804 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.util-impl/3.9.1 2022-04-03 16:17:02,820 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.equations-impl/3.9.1 2022-04-03 16:17:02,862 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.io.datasource-impl/3.9.1 2022-04-03 16:17:02,878 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.application-impl/3.9.1 2022-04-03 16:17:02,890 [features-3-thread-1] INFO org.cytoscape.application.userlog - Setting file directory = /home/psgendb/CytoscapeConfiguration 2022-04-03 16:17:02,891 [features-3-thread-1] INFO org.cytoscape.application.userlog - Write tracker.active.session into /home/psgendb/CytoscapeConfiguration 2022-04-03 16:17:02,904 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.swing-util-impl/3.9.1 2022-04-03 16:17:02,958 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.work-swing-impl/3.9.1 2022-04-03 16:17:03,005 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.presentation-impl/3.9.1 2022-04-03 16:17:03,018 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.work-impl/3.9.1 2022-04-03 16:17:03,039 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.model-impl/3.9.1 2022-04-03 16:17:03,470 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.viewmodel-impl/3.9.1 2022-04-03 16:17:03,591 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.view.vizmap-impl/3.9.1 2022-04-03 16:17:03,658 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-impl/3.9.1 2022-04-03 16:17:03,673 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.group-impl/3.9.1 2022-04-03 16:17:03,827 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.vizmap-gui-core-impl/3.9.1 2022-04-03 16:17:03,834 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.session-impl/3.9.1 2022-04-03 16:17:03,852 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.custom-graphics-internal/3.9.1 2022-04-03 16:17:04,019 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.ding-presentation-impl/3.9.1 2022-04-03 16:17:04,227 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-presentation-impl/3.9.1 2022-04-03 16:17:04,303 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.io-impl/3.9.1 2022-04-03 16:17:04,396 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.core-task-impl/3.9.1 2022-04-03 16:17:04,560 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.command-executor-impl/3.9.1 2022-04-03 16:17:04,620 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.swing-application-impl/3.9.1 2022-04-03 16:17:05,882 [features-3-thread-1] WARN org.cytoscape.application.userlog - The virtual key 'VK_?' does not exist. 2022-04-03 16:17:06,133 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.jobs-impl/3.9.1 2022-04-03 16:17:06,209 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.editor-impl/3.9.1 2022-04-03 16:17:06,243 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.vizmap-gui-impl/3.9.1 2022-04-03 16:17:06,658 [features-3-thread-1] INFO org.cytoscape.application.userlog - CyNetwork w/ private tables created: ID = 2 2022-04-03 16:17:06,659 [features-3-thread-1] INFO org.cytoscape.application.userlog - CyNetwork w/ private tables created: Base Graph ID = 43 2022-04-03 16:17:06,953 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-cytoscape-impl/3.9.1 2022-04-03 16:17:06,986 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.webservice-impl/3.9.1 2022-04-03 16:17:07,078 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-import-impl/3.9.1 2022-04-03 16:17:07,572 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - edge-bundler/3.9.1 2022-04-03 16:17:07,588 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.manual-layout-impl/3.9.1 2022-04-03 16:17:07,752 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.linkout-impl/3.9.1 2022-04-03 16:17:07,780 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-prefuse-impl/3.9.1 2022-04-03 16:17:07,794 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.graphml-impl/3.9.1 2022-04-03 16:17:07,807 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.search-impl/3.9.1 2022-04-03 16:17:07,830 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-browser-impl/3.9.1 2022-04-03 16:17:08,037 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.filter2-impl/3.9.1 2022-04-03 16:17:08,269 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.app-impl/3.9.1 2022-04-03 16:17:08,399 [pool-10-thread-1] INFO org.cytoscape.application.userlog - Server socket started on 127.0.0.1:2607 2022-04-03 16:17:08,415 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.scripting-impl/3.9.1 2022-04-03 16:17:08,452 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.cytoscape.scripting-impl/3.9.1 is waiting for namespace handlers [http://karaf.apache.org/xmlns/shell/v1.0.1, http://www.osgi.org/xmlns/blueprint/v1.0.1] 2022-04-03 16:17:08,454 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.gui-cmdline-parser-impl/3.9.1 2022-04-03 16:17:08,477 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.equations-functions-impl/3.9.1 2022-04-03 16:17:08,511 [features-3-thread-1] INFO org.apache.karaf.deployer.features.osgi.Activator - Deployment finished. Registering FeatureDeploymentListener 2022-04-03 16:17:12,125 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Done. 2022-04-03 16:17:12,300 [pool-9-thread-1] INFO org.cytoscape.application.userlog - New network import client registered: Universal Interaction Database Client 2022-04-03 16:17:12,742 [Thread-16] ERROR org.cytoscape.opencl.layout.CyActivator - No OpenCL compatible device found. Cannot register 'Prefuse Force Directed OpenCL Layout'. 2022-04-03 16:17:15,638 [pool-9-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-04-03 16:17:15,640 [pool-9-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-04-03 16:17:15,641 [pool-9-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-04-03 16:17:15,682 [pool-9-thread-1] INFO org.cytoscape.io.webservice.biomart.rest.BiomartRestClient - Biomart Service URL is: http://www.ensembl.org/biomart/martservice 2022-04-03 16:17:15,735 [pool-9-thread-1] INFO org.cytoscape.application.userlog - New network import client registered: BioMart Client 2022-04-03 16:17:16,281 [Task-Thread-1-Factory-0x50e1a777] INFO org.cytoscape.io.internal.read.GenericReaderManager - Filter returns Accepted. Need to check priority: org.cytoscape.io.internal.read.vizmap.VizmapXMLReaderFactory@6efe85fc 2022-04-03 16:17:16,283 [Task-Thread-1-Factory-0x50e1a777] INFO org.cytoscape.io.internal.read.GenericReaderManager - Successfully found compatible ReaderFactory org.cytoscape.io.internal.read.vizmap.VizmapXMLReaderFactory@6efe85fc 2022-04-03 16:17:16,293 [Task-Thread-3-Factory-0x50e1a777] INFO org.cytoscape.application.userlog - Custom Graphics Image property file loaded from: /home/psgendb/CytoscapeConfiguration/images3 2022-04-03 16:17:16,299 [Task-Thread-3-Factory-0x50e1a777] INFO org.cytoscape.application.userlog - Image loading process finished in 0.01 sec. 2022-04-03 16:17:16,300 [Task-Thread-3-Factory-0x50e1a777] INFO org.cytoscape.application.userlog - Currently, -1 images are available. 2022-04-03 16:17:17,280 [Task-Thread-3-Factory-0x50e1a777] INFO org.cytoscape.application.userlog - Image saving process finished in 0.993 sec. 2022-04-03 16:17:17,558 [pool-9-thread-1] INFO org.cytoscape.diffusion.internal.rest.RemoteLogger - No property set for cytoscape.remotelogging.senderaddressservicehostname; setting logger sender address service hostname to: http://35.197.44.209 2022-04-03 16:17:19,199 [pool-84-thread-1] INFO org.cytoscape.rest.internal.CyActivator - Initializing cyREST API server... 2022-04-03 16:17:20,982 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - Start Saving images to: /home/psgendb/CytoscapeConfiguration/images3 2022-04-03 16:17:20,985 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - ========== Image saving process finished ============= 2022-04-03 16:17:21,003 [Task-Thread-3-Factory-0x50e1a777] INFO org.cytoscape.application.userlog - Image saving process finished in 0.012 sec. 2022-04-03 16:17:21,124 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - #CiaoBello 2022-04-03 16:17:21,163 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.karaf.shell.core/4.2.8 2022-04-03 16:17:21,180 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.cytoscape.scripting-impl/3.9.1 2022-04-03 16:17:21,186 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 16:17:21,177 [pool-84-thread-1] ERROR org.cytoscape.rest.internal.CyActivator - Failed to initialize cyREST server. org.osgi.framework.BundleException: The framework has been shutdown. at org.apache.felix.framework.Felix.installBundle(Felix.java:2995) ~[?:?] at org.apache.felix.framework.BundleContextImpl.installBundle(BundleContextImpl.java:167) ~[?:?] at org.apache.felix.framework.BundleContextImpl.installBundle(BundleContextImpl.java:140) ~[?:?] at org.cytoscape.rest.internal.task.OSGiJAXRSManager.installFeature(OSGiJAXRSManager.java:156) ~[!/:?] at org.cytoscape.rest.internal.task.OSGiJAXRSManager.installOSGiJAXRSBundles(OSGiJAXRSManager.java:113) ~[!/:?] at org.cytoscape.rest.internal.CyActivator.lambda$startCyREST$0(CyActivator.java:325) [!/:?] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515) [?:?] at java.util.concurrent.FutureTask.run(FutureTask.java:264) [?:?] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) [?:?] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) [?:?] at java.lang.Thread.run(Thread.java:829) [?:?] 2022-04-03 16:17:21,195 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.aries.blueprint.cm/1.3.1 2022-04-03 16:17:21,207 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.aries.blueprint.core/1.10.2 2022-04-03 16:17:21,266 [FelixStartLevel] INFO org.cytoscape.cyndex2.internal.CyActivator - Shutting down CyNDEx-2... 2022-04-03 16:17:21,324 [FelixStartLevel] INFO org.cytoscape.rest.internal.CyActivator - Shutting down REST server... 2022-04-03 16:17:22,064 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.system.core/4.2.8 2022-04-03 16:17:22,089 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:17:22,091 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 16:17:22,092 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.log.core/4.2.8 2022-04-03 16:17:22,094 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.bundle.core/4.2.8 2022-04-03 16:17:22,095 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.service.core/4.2.8 2022-04-03 16:17:22,097 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.instance.core/4.2.8 2022-04-03 16:17:22,098 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.features.command/4.2.8 2022-04-03 16:17:22,100 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.shell.commands/4.2.8 2022-04-03 16:19:10,131 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.config.cfg 2022-04-03 16:19:10,221 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.jaas.cfg 2022-04-03 16:19:10,312 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.shell.cfg 2022-04-03 16:19:10,393 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.ops4j.pax.url.mvn.cfg 2022-04-03 16:19:10,476 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.jaas.cfg 2022-04-03 16:19:10,577 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.feature.cfg 2022-04-03 16:19:10,629 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.bundle.cfg 2022-04-03 16:19:11,965 [activator-1-thread-2] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Adding features: cytoscape-karaf/[3.9.1,3.9.1],cytoscape-gui/[3.9.1,3.9.1] 2022-04-03 16:19:12,731 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Changes to perform: 2022-04-03 16:19:12,732 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Region: root 2022-04-03 16:19:12,732 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Bundles to install: 2022-04-03 16:19:12,732 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.activation/com.springsource.javax.activation/1.1.1 2022-04-03 16:19:12,732 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.xml.stream/com.springsource.javax.xml.stream/1.0.1 2022-04-03 16:19:12,733 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/edge-bundler-impl/3.9.1 2022-04-03 16:19:12,733 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.ws.rs/javax.ws.rs-api/2.1 2022-04-03 16:19:12,733 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.api/1.0.1 2022-04-03 16:19:12,733 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.cm/1.3.1 2022-04-03 16:19:12,733 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core/1.10.2 2022-04-03 16:19:12,733 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core.compatibility/1.0.0 2022-04-03 16:19:12,734 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.proxy/org.apache.aries.proxy/1.1.6 2022-04-03 16:19:12,734 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:commons-io/commons-io/2.1 2022-04-03 16:19:12,734 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.blueprintstate/4.2.8 2022-04-03 16:19:12,734 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.core/4.2.8 2022-04-03 16:19:12,734 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.blueprint/4.2.8 2022-04-03 16:19:12,734 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.features/4.2.8 2022-04-03 16:19:12,735 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.boot/4.2.8 2022-04-03 16:19:12,735 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 16:19:12,735 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.features/org.apache.karaf.features.command/4.2.8 2022-04-03 16:19:12,735 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.instance/org.apache.karaf.instance.core/4.2.8 2022-04-03 16:19:12,735 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas.blueprint/org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 16:19:12,735 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:19:12,736 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.config/4.2.8 2022-04-03 16:19:12,736 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.modules/4.2.8 2022-04-03 16:19:12,736 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.log/org.apache.karaf.log.core/4.2.8 2022-04-03 16:19:12,736 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.service/org.apache.karaf.service.core/4.2.8 2022-04-03 16:19:12,736 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.commands/4.2.8 2022-04-03 16:19:12,736 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.console/4.2.8 2022-04-03 16:19:12,737 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.core/4.2.8 2022-04-03 16:19:12,737 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.table/4.2.8 2022-04-03 16:19:12,737 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.system/org.apache.karaf.system.core/4.2.8 2022-04-03 16:19:12,737 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.jaxb-impl/2.1.6_1 2022-04-03 16:19:12,737 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.xmlbeans/2.4.0_5 2022-04-03 16:19:12,737 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-04-03 16:19:12,738 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-04-03 16:19:12,738 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-04-03 16:19:12,738 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-04-03 16:19:12,738 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/api-bundle/3.9.1 2022-04-03 16:19:12,738 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/app-impl/3.9.1 2022-04-03 16:19:12,738 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/application-impl/3.9.1 2022-04-03 16:19:12,739 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/application-metadata-impl/3.9.1 2022-04-03 16:19:12,739 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/cmdline/3.9.1 2022-04-03 16:19:12,739 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/cmdline-impl/3.9.1 2022-04-03 16:19:12,739 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/command-executor-impl/3.9.1 2022-04-03 16:19:12,739 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/core-task-impl/3.9.1 2022-04-03 16:19:12,739 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/custom-graphics-internal/3.9.1 2022-04-03 16:19:12,739 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/diagnostics-impl/3.9.1 2022-04-03 16:19:12,740 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/ding-presentation-impl/3.9.1 2022-04-03 16:19:12,740 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/editor-impl/3.9.1 2022-04-03 16:19:12,740 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-functions-impl/3.9.1 2022-04-03 16:19:12,740 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-impl/3.9.1 2022-04-03 16:19:12,740 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/event-impl/3.9.1 2022-04-03 16:19:12,740 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/filter2-impl/3.9.1 2022-04-03 16:19:12,741 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/graphml-impl/3.9.1 2022-04-03 16:19:12,741 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/group-impl/3.9.1 2022-04-03 16:19:12,741 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/gui-cmdline-parser-impl/3.9.1 2022-04-03 16:19:12,741 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/io-impl/3.9.1 2022-04-03 16:19:12,741 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/datasource-impl/3.9.1 2022-04-03 16:19:12,742 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/jobs-impl/3.9.1 2022-04-03 16:19:12,742 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-cytoscape-impl/3.9.1 2022-04-03 16:19:12,742 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-impl/3.9.1 2022-04-03 16:19:12,742 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-prefuse-impl/3.9.1 2022-04-03 16:19:12,742 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/linkout-impl/3.9.1 2022-04-03 16:19:12,742 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/manual-layout-impl/3.9.1 2022-04-03 16:19:12,742 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/model-impl/3.9.1 2022-04-03 16:19:12,743 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/presentation-impl/3.9.1 2022-04-03 16:19:12,743 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/property-impl/3.9.1 2022-04-03 16:19:12,743 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/scripting-impl/3.9.1 2022-04-03 16:19:12,743 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/search-impl/3.9.1 2022-04-03 16:19:12,743 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/session-impl/3.9.1 2022-04-03 16:19:12,743 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/splash-updater-impl/3.9.1 2022-04-03 16:19:12,743 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-application-impl/3.9.1 2022-04-03 16:19:12,744 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-util-impl/3.9.1 2022-04-03 16:19:12,744 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-browser-impl/3.9.1 2022-04-03 16:19:12,744 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-import-impl/3.9.1 2022-04-03 16:19:12,744 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-presentation-impl/3.9.1 2022-04-03 16:19:12,744 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/third-party/3.9.1 2022-04-03 16:19:12,744 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/util-impl/3.9.1 2022-04-03 16:19:12,745 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-impl/3.9.1 2022-04-03 16:19:12,745 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/viewmodel-impl/3.9.1 2022-04-03 16:19:12,745 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-core-impl/3.9.1 2022-04-03 16:19:12,745 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-impl/3.9.1 2022-04-03 16:19:12,745 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/webservice-impl/3.9.1 2022-04-03 16:19:12,745 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-impl/3.9.1 2022-04-03 16:19:12,745 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-swing-impl/3.9.1 2022-04-03 16:19:12,746 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-builtins/3.13.2 2022-04-03 16:19:12,746 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-reader/3.13.2 2022-04-03 16:19:12,746 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal/3.13.2 2022-04-03 16:19:12,746 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal-jansi/3.13.2 2022-04-03 16:19:12,746 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm/7.2 2022-04-03 16:19:12,746 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-commons/7.2 2022-04-03 16:19:12,747 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-tree/7.2 2022-04-03 16:19:12,747 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-analysis/7.2 2022-04-03 16:19:12,747 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-util/7.2 2022-04-03 16:19:12,747 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:cytoscape-temp/uk.ac.ebi.enfin.mi.cluster.micluster/1.6 2022-04-03 16:19:12,751 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Installing bundles: 2022-04-03 16:19:12,751 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.activation/com.springsource.javax.activation/1.1.1 2022-04-03 16:19:12,787 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.xml.stream/com.springsource.javax.xml.stream/1.0.1 2022-04-03 16:19:12,819 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/edge-bundler-impl/3.9.1 2022-04-03 16:19:12,845 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.ws.rs/javax.ws.rs-api/2.1 2022-04-03 16:19:12,888 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.api/1.0.1 2022-04-03 16:19:12,915 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.cm/1.3.1 2022-04-03 16:19:12,943 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core/1.10.2 2022-04-03 16:19:12,981 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core.compatibility/1.0.0 2022-04-03 16:19:13,008 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.proxy/org.apache.aries.proxy/1.1.6 2022-04-03 16:19:13,039 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:commons-io/commons-io/2.1 2022-04-03 16:19:13,070 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.blueprintstate/4.2.8 2022-04-03 16:19:13,097 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.core/4.2.8 2022-04-03 16:19:13,130 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.blueprint/4.2.8 2022-04-03 16:19:13,155 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.features/4.2.8 2022-04-03 16:19:13,180 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.boot/4.2.8 2022-04-03 16:19:13,206 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 16:19:13,231 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.features/org.apache.karaf.features.command/4.2.8 2022-04-03 16:19:13,258 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.instance/org.apache.karaf.instance.core/4.2.8 2022-04-03 16:19:13,292 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas.blueprint/org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 16:19:13,320 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:19:13,355 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.config/4.2.8 2022-04-03 16:19:13,379 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.modules/4.2.8 2022-04-03 16:19:13,435 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.log/org.apache.karaf.log.core/4.2.8 2022-04-03 16:19:13,467 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.service/org.apache.karaf.service.core/4.2.8 2022-04-03 16:19:13,492 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.commands/4.2.8 2022-04-03 16:19:13,527 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.console/4.2.8 2022-04-03 16:19:13,561 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.core/4.2.8 2022-04-03 16:19:13,609 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.table/4.2.8 2022-04-03 16:19:13,637 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.system/org.apache.karaf.system.core/4.2.8 2022-04-03 16:19:13,669 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.jaxb-impl/2.1.6_1 2022-04-03 16:19:13,713 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.xmlbeans/2.4.0_5 2022-04-03 16:19:13,787 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-04-03 16:19:13,815 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-04-03 16:19:13,842 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-04-03 16:19:13,874 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-04-03 16:19:13,910 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/api-bundle/3.9.1 2022-04-03 16:19:13,956 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/app-impl/3.9.1 2022-04-03 16:19:13,993 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/application-impl/3.9.1 2022-04-03 16:19:14,017 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/application-metadata-impl/3.9.1 2022-04-03 16:19:14,042 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/cmdline/3.9.1 2022-04-03 16:19:14,062 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/cmdline-impl/3.9.1 2022-04-03 16:19:14,088 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/command-executor-impl/3.9.1 2022-04-03 16:19:14,118 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/core-task-impl/3.9.1 2022-04-03 16:19:14,181 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/custom-graphics-internal/3.9.1 2022-04-03 16:19:14,221 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/diagnostics-impl/3.9.1 2022-04-03 16:19:14,246 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/ding-presentation-impl/3.9.1 2022-04-03 16:19:14,296 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/editor-impl/3.9.1 2022-04-03 16:19:14,324 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-functions-impl/3.9.1 2022-04-03 16:19:14,350 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-impl/3.9.1 2022-04-03 16:19:14,383 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/event-impl/3.9.1 2022-04-03 16:19:14,409 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/filter2-impl/3.9.1 2022-04-03 16:19:14,439 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/graphml-impl/3.9.1 2022-04-03 16:19:14,468 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/group-impl/3.9.1 2022-04-03 16:19:14,497 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/gui-cmdline-parser-impl/3.9.1 2022-04-03 16:19:14,521 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/io-impl/3.9.1 2022-04-03 16:19:14,564 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/datasource-impl/3.9.1 2022-04-03 16:19:14,588 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/jobs-impl/3.9.1 2022-04-03 16:19:14,613 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-cytoscape-impl/3.9.1 2022-04-03 16:19:14,647 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-impl/3.9.1 2022-04-03 16:19:14,675 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-prefuse-impl/3.9.1 2022-04-03 16:19:14,703 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/linkout-impl/3.9.1 2022-04-03 16:19:14,736 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/manual-layout-impl/3.9.1 2022-04-03 16:19:14,768 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/model-impl/3.9.1 2022-04-03 16:19:15,013 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/presentation-impl/3.9.1 2022-04-03 16:19:15,067 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/property-impl/3.9.1 2022-04-03 16:19:15,120 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/scripting-impl/3.9.1 2022-04-03 16:19:15,149 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/search-impl/3.9.1 2022-04-03 16:19:15,179 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/session-impl/3.9.1 2022-04-03 16:19:15,204 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/splash-updater-impl/3.9.1 2022-04-03 16:19:15,232 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-application-impl/3.9.1 2022-04-03 16:19:15,320 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-util-impl/3.9.1 2022-04-03 16:19:15,353 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-browser-impl/3.9.1 2022-04-03 16:19:15,386 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-import-impl/3.9.1 2022-04-03 16:19:15,623 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-presentation-impl/3.9.1 2022-04-03 16:19:15,668 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/third-party/3.9.1 2022-04-03 16:19:15,974 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/util-impl/3.9.1 2022-04-03 16:19:16,006 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-impl/3.9.1 2022-04-03 16:19:16,034 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/viewmodel-impl/3.9.1 2022-04-03 16:19:16,080 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-core-impl/3.9.1 2022-04-03 16:19:16,108 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-impl/3.9.1 2022-04-03 16:19:16,148 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/webservice-impl/3.9.1 2022-04-03 16:19:16,177 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-impl/3.9.1 2022-04-03 16:19:16,202 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-swing-impl/3.9.1 2022-04-03 16:19:16,234 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-builtins/3.13.2 2022-04-03 16:19:16,470 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-reader/3.13.2 2022-04-03 16:19:16,501 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal/3.13.2 2022-04-03 16:19:16,532 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal-jansi/3.13.2 2022-04-03 16:19:16,560 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm/7.2 2022-04-03 16:19:16,593 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-commons/7.2 2022-04-03 16:19:16,625 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-tree/7.2 2022-04-03 16:19:16,653 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-analysis/7.2 2022-04-03 16:19:16,679 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-util/7.2 2022-04-03 16:19:16,709 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:cytoscape-temp/uk.ac.ebi.enfin.mi.cluster.micluster/1.6 2022-04-03 16:19:18,146 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Starting bundles: 2022-04-03 16:19:18,149 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.splash-updater-impl/3.9.1 2022-04-03 16:19:18,158 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.diagnostics-impl/3.9.1 2022-04-03 16:19:18,172 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.api/1.0.1 2022-04-03 16:19:18,178 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm/7.2.0 2022-04-03 16:19:18,183 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.tree/7.2.0 2022-04-03 16:19:18,187 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.commons/7.2.0 2022-04-03 16:19:18,192 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.proxy/1.1.6 2022-04-03 16:19:18,218 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.core/1.10.2 2022-04-03 16:19:18,283 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintExtender - No quiesce support is available, so blueprint components will not participate in quiesce operations 2022-04-03 16:19:18,491 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.aries.blueprint.core/1.10.2 has been started 2022-04-03 16:19:18,491 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.tree.analysis/7.2.0 2022-04-03 16:19:18,501 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.util/7.2.0 2022-04-03 16:19:18,507 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.cm/1.3.1 2022-04-03 16:19:18,534 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.aries.blueprint.cm/1.3.1 has been started 2022-04-03 16:19:18,535 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.deployer.blueprint/4.2.8 2022-04-03 16:19:18,552 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.deployer.features/4.2.8 2022-04-03 16:19:18,576 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.table/4.2.8 2022-04-03 16:19:18,583 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.terminal/3.13.2 2022-04-03 16:19:18,589 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.reader/3.13.2 2022-04-03 16:19:18,595 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.builtins/3.13.2 2022-04-03 16:19:18,600 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.core/4.2.8 2022-04-03 16:19:19,136 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.karaf.shell.core/4.2.8 has been started 2022-04-03 16:19:19,137 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.service.core/4.2.8 2022-04-03 16:19:19,173 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.service.core/4.2.8 2022-04-03 16:19:19,175 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.config/4.2.8 2022-04-03 16:19:19,198 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.modules/4.2.8 2022-04-03 16:19:19,219 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:19:19,248 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:19:19,250 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Updating commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:19:19,253 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Updating commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:19:19,254 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.features.command/4.2.8 2022-04-03 16:19:19,286 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.features.command/4.2.8 2022-04-03 16:19:19,288 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 16:19:19,306 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 16:19:19,306 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 16:19:19,325 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.karaf.jaas.blueprint.config/4.2.8 has been started 2022-04-03 16:19:19,326 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.instance.core/4.2.8 2022-04-03 16:19:19,363 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.instance.core/4.2.8 2022-04-03 16:19:19,364 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.bundle.core/4.2.8 2022-04-03 16:19:19,429 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.bundle.core/4.2.8 2022-04-03 16:19:19,430 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.bundle.blueprintstate/4.2.8 2022-04-03 16:19:19,455 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.log.core/4.2.8 2022-04-03 16:19:19,489 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.log.core/4.2.8 2022-04-03 16:19:19,490 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.system.core/4.2.8 2022-04-03 16:19:19,491 [activator-1-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.log.core/4.2.8 2022-04-03 16:19:19,495 [activator-1-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.log.core/4.2.8 2022-04-03 16:19:19,511 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.system.core/4.2.8 2022-04-03 16:19:19,512 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.commands/4.2.8 2022-04-03 16:19:19,535 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.shell.commands/4.2.8 2022-04-03 16:19:19,552 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-04-03 16:19:19,573 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.commons.io/2.1.0 2022-04-03 16:19:19,579 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - com.springsource.javax.activation/1.1.1 2022-04-03 16:19:19,587 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - com.springsource.javax.xml.stream/1.0.1 2022-04-03 16:19:19,593 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-04-03 16:19:19,611 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.bundles.jaxb-impl/2.1.6.1 2022-04-03 16:19:19,621 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - uk.ac.ebi.enfin.mi.cluster/1.6.0 2022-04-03 16:19:19,630 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.third-party/3.9.1 2022-04-03 16:19:19,639 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-04-03 16:19:19,661 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-04-03 16:19:19,682 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.bundles.xmlbeans/2.4.0.5 2022-04-03 16:19:19,689 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - javax.ws.rs-api/2.1.0 2022-04-03 16:19:19,696 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.cmdline/3.9.1 2022-04-03 16:19:19,702 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.api-bundle/3.9.1 2022-04-03 16:19:19,712 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.event-impl/3.9.1 2022-04-03 16:19:19,724 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.cmdline-impl/3.9.1 2022-04-03 16:19:19,733 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.property.internal/3.9.1 2022-04-03 16:19:19,784 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.util-impl/3.9.1 2022-04-03 16:19:19,803 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.equations-impl/3.9.1 2022-04-03 16:19:19,848 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.io.datasource-impl/3.9.1 2022-04-03 16:19:19,865 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.application-impl/3.9.1 2022-04-03 16:19:19,879 [features-3-thread-1] INFO org.cytoscape.application.userlog - Setting file directory = /home/psgendb/CytoscapeConfiguration 2022-04-03 16:19:19,881 [features-3-thread-1] INFO org.cytoscape.application.userlog - Write tracker.active.session into /home/psgendb/CytoscapeConfiguration 2022-04-03 16:19:19,895 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.swing-util-impl/3.9.1 2022-04-03 16:19:19,951 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.work-swing-impl/3.9.1 2022-04-03 16:19:19,998 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.work-impl/3.9.1 2022-04-03 16:19:20,017 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.presentation-impl/3.9.1 2022-04-03 16:19:20,029 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.model-impl/3.9.1 2022-04-03 16:19:20,422 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.viewmodel-impl/3.9.1 2022-04-03 16:19:20,477 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.view.vizmap-impl/3.9.1 2022-04-03 16:19:20,552 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-impl/3.9.1 2022-04-03 16:19:20,567 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.group-impl/3.9.1 2022-04-03 16:19:20,731 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.session-impl/3.9.1 2022-04-03 16:19:20,747 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.vizmap-gui-core-impl/3.9.1 2022-04-03 16:19:20,756 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.custom-graphics-internal/3.9.1 2022-04-03 16:19:20,924 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-presentation-impl/3.9.1 2022-04-03 16:19:21,015 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.ding-presentation-impl/3.9.1 2022-04-03 16:19:21,158 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.io-impl/3.9.1 2022-04-03 16:19:21,241 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.core-task-impl/3.9.1 2022-04-03 16:19:21,406 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.command-executor-impl/3.9.1 2022-04-03 16:19:21,465 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.swing-application-impl/3.9.1 2022-04-03 16:19:22,704 [features-3-thread-1] WARN org.cytoscape.application.userlog - The virtual key 'VK_?' does not exist. 2022-04-03 16:19:22,939 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.jobs-impl/3.9.1 2022-04-03 16:19:23,006 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-browser-impl/3.9.1 2022-04-03 16:19:23,290 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.webservice-impl/3.9.1 2022-04-03 16:19:23,391 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.filter2-impl/3.9.1 2022-04-03 16:19:23,606 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-prefuse-impl/3.9.1 2022-04-03 16:19:23,620 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.linkout-impl/3.9.1 2022-04-03 16:19:23,645 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-import-impl/3.9.1 2022-04-03 16:19:24,131 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.vizmap-gui-impl/3.9.1 2022-04-03 16:19:24,480 [features-3-thread-1] INFO org.cytoscape.application.userlog - CyNetwork w/ private tables created: ID = 2 2022-04-03 16:19:24,481 [features-3-thread-1] INFO org.cytoscape.application.userlog - CyNetwork w/ private tables created: Base Graph ID = 43 2022-04-03 16:19:24,812 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.editor-impl/3.9.1 2022-04-03 16:19:24,839 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.search-impl/3.9.1 2022-04-03 16:19:24,864 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.manual-layout-impl/3.9.1 2022-04-03 16:19:25,004 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-cytoscape-impl/3.9.1 2022-04-03 16:19:25,034 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - edge-bundler/3.9.1 2022-04-03 16:19:25,049 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.graphml-impl/3.9.1 2022-04-03 16:19:25,059 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.app-impl/3.9.1 2022-04-03 16:19:25,163 [pool-10-thread-1] INFO org.cytoscape.application.userlog - Server socket started on 127.0.0.1:2607 2022-04-03 16:19:25,179 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.scripting-impl/3.9.1 2022-04-03 16:19:25,204 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.cytoscape.scripting-impl/3.9.1 is waiting for namespace handlers [http://karaf.apache.org/xmlns/shell/v1.0.1, http://www.osgi.org/xmlns/blueprint/v1.0.1] 2022-04-03 16:19:25,205 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.gui-cmdline-parser-impl/3.9.1 2022-04-03 16:19:25,224 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.equations-functions-impl/3.9.1 2022-04-03 16:19:25,239 [features-3-thread-1] INFO org.apache.karaf.deployer.features.osgi.Activator - Deployment finished. Registering FeatureDeploymentListener 2022-04-03 16:19:26,908 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Done. 2022-04-03 16:19:27,480 [pool-9-thread-1] INFO org.cytoscape.io.webservice.biomart.rest.BiomartRestClient - Biomart Service URL is: http://www.ensembl.org/biomart/martservice 2022-04-03 16:19:27,533 [pool-9-thread-1] INFO org.cytoscape.application.userlog - New network import client registered: BioMart Client 2022-04-03 16:19:27,560 [Thread-16] ERROR org.cytoscape.opencl.layout.CyActivator - No OpenCL compatible device found. Cannot register 'Prefuse Force Directed OpenCL Layout'. 2022-04-03 16:19:27,854 [pool-9-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-04-03 16:19:27,855 [pool-9-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-04-03 16:19:27,857 [pool-9-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-04-03 16:19:28,150 [pool-9-thread-1] INFO org.cytoscape.application.userlog - New network import client registered: Universal Interaction Database Client 2022-04-03 16:19:28,430 [Task-Thread-1-Factory-0x160cc759] INFO org.cytoscape.io.internal.read.GenericReaderManager - Filter returns Accepted. Need to check priority: org.cytoscape.io.internal.read.vizmap.VizmapXMLReaderFactory@6c010928 2022-04-03 16:19:28,431 [Task-Thread-1-Factory-0x160cc759] INFO org.cytoscape.io.internal.read.GenericReaderManager - Successfully found compatible ReaderFactory org.cytoscape.io.internal.read.vizmap.VizmapXMLReaderFactory@6c010928 2022-04-03 16:19:28,446 [Task-Thread-3-Factory-0x160cc759] INFO org.cytoscape.application.userlog - Custom Graphics Image property file loaded from: /home/psgendb/CytoscapeConfiguration/images3 2022-04-03 16:19:28,452 [Task-Thread-3-Factory-0x160cc759] INFO org.cytoscape.application.userlog - Image loading process finished in 0.011 sec. 2022-04-03 16:19:28,453 [Task-Thread-3-Factory-0x160cc759] INFO org.cytoscape.application.userlog - Currently, -1 images are available. 2022-04-03 16:19:29,076 [Task-Thread-3-Factory-0x160cc759] INFO org.cytoscape.application.userlog - Image saving process finished in 0.637 sec. 2022-04-03 16:19:29,398 [pool-9-thread-1] INFO org.cytoscape.diffusion.internal.rest.RemoteLogger - No property set for cytoscape.remotelogging.senderaddressservicehostname; setting logger sender address service hostname to: http://35.197.44.209 2022-04-03 16:19:30,872 [pool-84-thread-1] INFO org.cytoscape.rest.internal.CyActivator - Initializing cyREST API server... 2022-04-03 16:19:32,599 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Examining bundle for SPI provider: org.eclipse.jetty.http 2022-04-03 16:19:32,603 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Found SPI resource: bundle://138.0:0/META-INF/services/org.eclipse.jetty.http.HttpFieldPreEncoder 2022-04-03 16:19:32,639 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Loaded SPI provider: class org.eclipse.jetty.http.Http1FieldPreEncoder 2022-04-03 16:19:32,642 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Registered service: org.apache.felix.framework.ServiceRegistrationImpl@7dc061d6 2022-04-03 16:19:32,642 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Registered provider: org.eclipse.jetty.http.HttpFieldPreEncoder in bundle org.eclipse.jetty.http 2022-04-03 16:19:33,668 [pool-84-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Command registration delayed for bundle org.apache.karaf.http.core/4.2.8. Missing service: [org.apache.karaf.http.core.ServletService, org.apache.karaf.http.core.ProxyService] 2022-04-03 16:19:34,019 [activator-1-thread-2] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 16:19:34,026 [activator-1-thread-2] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 16:19:34,044 [activator-1-thread-3] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 16:19:34,721 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - Start Saving images to: /home/psgendb/CytoscapeConfiguration/images3 2022-04-03 16:19:34,724 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - ========== Image saving process finished ============= 2022-04-03 16:19:34,742 [Task-Thread-3-Factory-0x160cc759] INFO org.cytoscape.application.userlog - Image saving process finished in 0.012 sec. 2022-04-03 16:19:34,837 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - #CiaoBello 2022-04-03 16:19:34,857 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.karaf.shell.core/4.2.8 2022-04-03 16:19:34,872 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.cytoscape.scripting-impl/3.9.1 2022-04-03 16:19:34,879 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 16:19:34,887 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.aries.blueprint.cm/1.3.1 2022-04-03 16:19:34,946 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.aries.blueprint.core/1.10.2 2022-04-03 16:19:35,481 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 16:19:35,600 [FelixStartLevel] INFO org.apache.aries.spifly.BaseActivator - Unregistered: org.apache.felix.framework.ServiceRegistrationImpl@7dc061d6 2022-04-03 16:19:35,669 [FelixStartLevel] INFO org.cytoscape.cyndex2.internal.CyActivator - Shutting down CyNDEx-2... 2022-04-03 16:19:35,713 [FelixStartLevel] INFO org.cytoscape.rest.internal.CyActivator - Shutting down REST server... 2022-04-03 16:19:35,877 [pool-84-thread-1] ERROR org.cytoscape.rest.internal.CyActivator - Failed to initialize cyREST server. java.lang.IllegalStateException: Invalid BundleContext. at org.apache.felix.framework.BundleContextImpl.checkValidity(BundleContextImpl.java:511) ~[?:?] at org.apache.felix.framework.BundleContextImpl.registerService(BundleContextImpl.java:328) ~[?:?] at org.apache.felix.framework.BundleContextImpl.registerService(BundleContextImpl.java:322) ~[?:?] at org.cytoscape.rest.internal.task.ResourceManager.registerResourceServices(ResourceManager.java:74) ~[!/:?] at org.cytoscape.rest.internal.CyActivator.lambda$startCyREST$0(CyActivator.java:327) [!/:?] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515) [?:?] at java.util.concurrent.FutureTask.run(FutureTask.java:264) [?:?] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) [?:?] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) [?:?] at java.lang.Thread.run(Thread.java:829) [?:?] 2022-04-03 16:19:36,392 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.system.core/4.2.8 2022-04-03 16:19:36,409 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.instance.core/4.2.8 2022-04-03 16:19:36,410 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.bundle.core/4.2.8 2022-04-03 16:19:36,412 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.service.core/4.2.8 2022-04-03 16:19:36,412 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.log.core/4.2.8 2022-04-03 16:19:36,413 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:19:36,415 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.shell.commands/4.2.8 2022-04-03 16:19:36,416 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.features.command/4.2.8 2022-04-03 16:19:36,418 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 16:21:58,126 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.felix.eventadmin.impl.EventAdmin.cfg 2022-04-03 16:21:58,179 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.kar.cfg 2022-04-03 16:21:58,229 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from jmx.acl.cfg 2022-04-03 16:21:58,260 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.config.cfg 2022-04-03 16:21:58,293 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.jaas.cfg 2022-04-03 16:21:58,323 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.shell.cfg 2022-04-03 16:21:58,356 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.ops4j.pax.url.mvn.cfg 2022-04-03 16:21:58,390 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.jaas.cfg 2022-04-03 16:21:58,424 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.feature.cfg 2022-04-03 16:21:58,455 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.bundle.cfg 2022-04-03 16:21:59,830 [activator-1-thread-2] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Adding features: cytoscape-karaf/[3.9.1,3.9.1],cytoscape-gui/[3.9.1,3.9.1] 2022-04-03 16:22:00,645 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Changes to perform: 2022-04-03 16:22:00,645 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Region: root 2022-04-03 16:22:00,645 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Bundles to install: 2022-04-03 16:22:00,646 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.activation/com.springsource.javax.activation/1.1.1 2022-04-03 16:22:00,646 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.xml.stream/com.springsource.javax.xml.stream/1.0.1 2022-04-03 16:22:00,646 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/edge-bundler-impl/3.9.1 2022-04-03 16:22:00,646 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.ws.rs/javax.ws.rs-api/2.1 2022-04-03 16:22:00,646 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.api/1.0.1 2022-04-03 16:22:00,647 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.cm/1.3.1 2022-04-03 16:22:00,647 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core/1.10.2 2022-04-03 16:22:00,647 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core.compatibility/1.0.0 2022-04-03 16:22:00,647 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.proxy/org.apache.aries.proxy/1.1.6 2022-04-03 16:22:00,647 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:commons-io/commons-io/2.1 2022-04-03 16:22:00,648 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.blueprintstate/4.2.8 2022-04-03 16:22:00,648 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.core/4.2.8 2022-04-03 16:22:00,648 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.blueprint/4.2.8 2022-04-03 16:22:00,648 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.features/4.2.8 2022-04-03 16:22:00,648 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.boot/4.2.8 2022-04-03 16:22:00,649 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 16:22:00,649 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.features/org.apache.karaf.features.command/4.2.8 2022-04-03 16:22:00,649 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.instance/org.apache.karaf.instance.core/4.2.8 2022-04-03 16:22:00,649 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas.blueprint/org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 16:22:00,649 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:22:00,649 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.config/4.2.8 2022-04-03 16:22:00,650 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.modules/4.2.8 2022-04-03 16:22:00,650 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.log/org.apache.karaf.log.core/4.2.8 2022-04-03 16:22:00,650 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.service/org.apache.karaf.service.core/4.2.8 2022-04-03 16:22:00,650 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.commands/4.2.8 2022-04-03 16:22:00,650 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.console/4.2.8 2022-04-03 16:22:00,650 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.core/4.2.8 2022-04-03 16:22:00,651 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.table/4.2.8 2022-04-03 16:22:00,651 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.system/org.apache.karaf.system.core/4.2.8 2022-04-03 16:22:00,651 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.jaxb-impl/2.1.6_1 2022-04-03 16:22:00,651 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.xmlbeans/2.4.0_5 2022-04-03 16:22:00,651 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-04-03 16:22:00,651 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-04-03 16:22:00,652 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-04-03 16:22:00,652 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-04-03 16:22:00,652 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/api-bundle/3.9.1 2022-04-03 16:22:00,652 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/app-impl/3.9.1 2022-04-03 16:22:00,652 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/application-impl/3.9.1 2022-04-03 16:22:00,653 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/application-metadata-impl/3.9.1 2022-04-03 16:22:00,653 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/cmdline/3.9.1 2022-04-03 16:22:00,653 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/cmdline-impl/3.9.1 2022-04-03 16:22:00,653 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/command-executor-impl/3.9.1 2022-04-03 16:22:00,653 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/core-task-impl/3.9.1 2022-04-03 16:22:00,653 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/custom-graphics-internal/3.9.1 2022-04-03 16:22:00,653 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/diagnostics-impl/3.9.1 2022-04-03 16:22:00,654 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/ding-presentation-impl/3.9.1 2022-04-03 16:22:00,654 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/editor-impl/3.9.1 2022-04-03 16:22:00,654 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-functions-impl/3.9.1 2022-04-03 16:22:00,654 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-impl/3.9.1 2022-04-03 16:22:00,654 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/event-impl/3.9.1 2022-04-03 16:22:00,654 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/filter2-impl/3.9.1 2022-04-03 16:22:00,655 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/graphml-impl/3.9.1 2022-04-03 16:22:00,655 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/group-impl/3.9.1 2022-04-03 16:22:00,655 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/gui-cmdline-parser-impl/3.9.1 2022-04-03 16:22:00,656 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/io-impl/3.9.1 2022-04-03 16:22:00,656 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/datasource-impl/3.9.1 2022-04-03 16:22:00,656 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/jobs-impl/3.9.1 2022-04-03 16:22:00,657 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-cytoscape-impl/3.9.1 2022-04-03 16:22:00,657 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-impl/3.9.1 2022-04-03 16:22:00,657 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-prefuse-impl/3.9.1 2022-04-03 16:22:00,657 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/linkout-impl/3.9.1 2022-04-03 16:22:00,657 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/manual-layout-impl/3.9.1 2022-04-03 16:22:00,657 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/model-impl/3.9.1 2022-04-03 16:22:00,658 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/presentation-impl/3.9.1 2022-04-03 16:22:00,658 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/property-impl/3.9.1 2022-04-03 16:22:00,658 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/scripting-impl/3.9.1 2022-04-03 16:22:00,658 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/search-impl/3.9.1 2022-04-03 16:22:00,658 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/session-impl/3.9.1 2022-04-03 16:22:00,659 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/splash-updater-impl/3.9.1 2022-04-03 16:22:00,659 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-application-impl/3.9.1 2022-04-03 16:22:00,659 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-util-impl/3.9.1 2022-04-03 16:22:00,659 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-browser-impl/3.9.1 2022-04-03 16:22:00,659 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-import-impl/3.9.1 2022-04-03 16:22:00,659 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-presentation-impl/3.9.1 2022-04-03 16:22:00,660 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/third-party/3.9.1 2022-04-03 16:22:00,660 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/util-impl/3.9.1 2022-04-03 16:22:00,660 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-impl/3.9.1 2022-04-03 16:22:00,660 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/viewmodel-impl/3.9.1 2022-04-03 16:22:00,660 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-core-impl/3.9.1 2022-04-03 16:22:00,660 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-impl/3.9.1 2022-04-03 16:22:00,661 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/webservice-impl/3.9.1 2022-04-03 16:22:00,661 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-impl/3.9.1 2022-04-03 16:22:00,661 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-swing-impl/3.9.1 2022-04-03 16:22:00,661 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-builtins/3.13.2 2022-04-03 16:22:00,661 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-reader/3.13.2 2022-04-03 16:22:00,661 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal/3.13.2 2022-04-03 16:22:00,662 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal-jansi/3.13.2 2022-04-03 16:22:00,662 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm/7.2 2022-04-03 16:22:00,662 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-commons/7.2 2022-04-03 16:22:00,662 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-tree/7.2 2022-04-03 16:22:00,662 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-analysis/7.2 2022-04-03 16:22:00,662 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-util/7.2 2022-04-03 16:22:00,662 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:cytoscape-temp/uk.ac.ebi.enfin.mi.cluster.micluster/1.6 2022-04-03 16:22:00,665 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Installing bundles: 2022-04-03 16:22:00,666 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.activation/com.springsource.javax.activation/1.1.1 2022-04-03 16:22:00,735 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.xml.stream/com.springsource.javax.xml.stream/1.0.1 2022-04-03 16:22:00,774 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/edge-bundler-impl/3.9.1 2022-04-03 16:22:00,833 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.ws.rs/javax.ws.rs-api/2.1 2022-04-03 16:22:00,871 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.api/1.0.1 2022-04-03 16:22:00,969 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.cm/1.3.1 2022-04-03 16:22:01,015 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core/1.10.2 2022-04-03 16:22:01,123 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core.compatibility/1.0.0 2022-04-03 16:22:01,196 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.proxy/org.apache.aries.proxy/1.1.6 2022-04-03 16:22:01,392 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:commons-io/commons-io/2.1 2022-04-03 16:22:01,547 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.blueprintstate/4.2.8 2022-04-03 16:22:01,621 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.core/4.2.8 2022-04-03 16:22:01,680 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.blueprint/4.2.8 2022-04-03 16:22:01,727 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.features/4.2.8 2022-04-03 16:22:01,789 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.boot/4.2.8 2022-04-03 16:22:01,833 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 16:22:01,861 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.features/org.apache.karaf.features.command/4.2.8 2022-04-03 16:22:01,894 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.instance/org.apache.karaf.instance.core/4.2.8 2022-04-03 16:22:01,935 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas.blueprint/org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 16:22:01,972 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:22:02,003 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.config/4.2.8 2022-04-03 16:22:02,035 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.modules/4.2.8 2022-04-03 16:22:02,095 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.log/org.apache.karaf.log.core/4.2.8 2022-04-03 16:22:02,126 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.service/org.apache.karaf.service.core/4.2.8 2022-04-03 16:22:02,157 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.commands/4.2.8 2022-04-03 16:22:02,198 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.console/4.2.8 2022-04-03 16:22:02,232 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.core/4.2.8 2022-04-03 16:22:02,276 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.table/4.2.8 2022-04-03 16:22:02,307 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.system/org.apache.karaf.system.core/4.2.8 2022-04-03 16:22:02,344 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.jaxb-impl/2.1.6_1 2022-04-03 16:22:02,419 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.xmlbeans/2.4.0_5 2022-04-03 16:22:02,527 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-04-03 16:22:02,611 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-04-03 16:22:02,647 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-04-03 16:22:02,674 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-04-03 16:22:02,699 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/api-bundle/3.9.1 2022-04-03 16:22:02,747 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/app-impl/3.9.1 2022-04-03 16:22:02,865 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/application-impl/3.9.1 2022-04-03 16:22:02,887 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/application-metadata-impl/3.9.1 2022-04-03 16:22:02,923 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/cmdline/3.9.1 2022-04-03 16:22:02,951 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/cmdline-impl/3.9.1 2022-04-03 16:22:02,981 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/command-executor-impl/3.9.1 2022-04-03 16:22:03,010 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/core-task-impl/3.9.1 2022-04-03 16:22:03,067 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/custom-graphics-internal/3.9.1 2022-04-03 16:22:03,109 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/diagnostics-impl/3.9.1 2022-04-03 16:22:03,136 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/ding-presentation-impl/3.9.1 2022-04-03 16:22:03,280 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/editor-impl/3.9.1 2022-04-03 16:22:03,313 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-functions-impl/3.9.1 2022-04-03 16:22:03,339 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-impl/3.9.1 2022-04-03 16:22:03,390 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/event-impl/3.9.1 2022-04-03 16:22:03,416 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/filter2-impl/3.9.1 2022-04-03 16:22:03,454 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/graphml-impl/3.9.1 2022-04-03 16:22:03,525 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/group-impl/3.9.1 2022-04-03 16:22:03,570 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/gui-cmdline-parser-impl/3.9.1 2022-04-03 16:22:03,596 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/io-impl/3.9.1 2022-04-03 16:22:03,655 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/datasource-impl/3.9.1 2022-04-03 16:22:03,712 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/jobs-impl/3.9.1 2022-04-03 16:22:03,738 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-cytoscape-impl/3.9.1 2022-04-03 16:22:03,778 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-impl/3.9.1 2022-04-03 16:22:03,805 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-prefuse-impl/3.9.1 2022-04-03 16:22:03,834 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/linkout-impl/3.9.1 2022-04-03 16:22:03,865 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/manual-layout-impl/3.9.1 2022-04-03 16:22:03,919 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/model-impl/3.9.1 2022-04-03 16:22:04,149 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/presentation-impl/3.9.1 2022-04-03 16:22:04,173 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/property-impl/3.9.1 2022-04-03 16:22:04,200 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/scripting-impl/3.9.1 2022-04-03 16:22:04,225 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/search-impl/3.9.1 2022-04-03 16:22:04,252 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/session-impl/3.9.1 2022-04-03 16:22:04,283 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/splash-updater-impl/3.9.1 2022-04-03 16:22:04,306 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-application-impl/3.9.1 2022-04-03 16:22:04,391 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-util-impl/3.9.1 2022-04-03 16:22:04,430 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-browser-impl/3.9.1 2022-04-03 16:22:04,468 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-import-impl/3.9.1 2022-04-03 16:22:04,758 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-presentation-impl/3.9.1 2022-04-03 16:22:04,853 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/third-party/3.9.1 2022-04-03 16:22:05,201 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/util-impl/3.9.1 2022-04-03 16:22:05,300 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-impl/3.9.1 2022-04-03 16:22:05,354 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/viewmodel-impl/3.9.1 2022-04-03 16:22:05,411 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-core-impl/3.9.1 2022-04-03 16:22:05,444 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-impl/3.9.1 2022-04-03 16:22:05,483 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/webservice-impl/3.9.1 2022-04-03 16:22:05,513 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-impl/3.9.1 2022-04-03 16:22:05,538 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-swing-impl/3.9.1 2022-04-03 16:22:05,575 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-builtins/3.13.2 2022-04-03 16:22:05,606 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-reader/3.13.2 2022-04-03 16:22:05,639 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal/3.13.2 2022-04-03 16:22:05,670 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal-jansi/3.13.2 2022-04-03 16:22:05,695 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm/7.2 2022-04-03 16:22:05,727 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-commons/7.2 2022-04-03 16:22:05,755 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-tree/7.2 2022-04-03 16:22:05,784 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-analysis/7.2 2022-04-03 16:22:05,811 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-util/7.2 2022-04-03 16:22:05,842 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:cytoscape-temp/uk.ac.ebi.enfin.mi.cluster.micluster/1.6 2022-04-03 16:22:07,667 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Starting bundles: 2022-04-03 16:22:07,670 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.splash-updater-impl/3.9.1 2022-04-03 16:22:07,702 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.diagnostics-impl/3.9.1 2022-04-03 16:22:07,716 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.api/1.0.1 2022-04-03 16:22:07,722 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm/7.2.0 2022-04-03 16:22:07,727 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.tree/7.2.0 2022-04-03 16:22:07,743 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.commons/7.2.0 2022-04-03 16:22:07,748 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.proxy/1.1.6 2022-04-03 16:22:07,765 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.core/1.10.2 2022-04-03 16:22:07,823 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintExtender - No quiesce support is available, so blueprint components will not participate in quiesce operations 2022-04-03 16:22:08,029 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.aries.blueprint.core/1.10.2 has been started 2022-04-03 16:22:08,030 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.cm/1.3.1 2022-04-03 16:22:08,058 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.aries.blueprint.cm/1.3.1 has been started 2022-04-03 16:22:08,058 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.tree.analysis/7.2.0 2022-04-03 16:22:08,064 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.util/7.2.0 2022-04-03 16:22:08,071 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.deployer.blueprint/4.2.8 2022-04-03 16:22:08,086 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.deployer.features/4.2.8 2022-04-03 16:22:08,108 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.terminal/3.13.2 2022-04-03 16:22:08,174 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.reader/3.13.2 2022-04-03 16:22:08,276 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.builtins/3.13.2 2022-04-03 16:22:08,293 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.core/4.2.8 2022-04-03 16:22:08,796 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.karaf.shell.core/4.2.8 has been started 2022-04-03 16:22:08,796 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.commands/4.2.8 2022-04-03 16:22:08,835 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.shell.commands/4.2.8 2022-04-03 16:22:08,837 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.log.core/4.2.8 2022-04-03 16:22:08,877 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Command registration delayed for bundle org.apache.karaf.log.core/4.2.8. Missing service: [org.apache.karaf.log.core.LogEventFormatter, org.apache.karaf.log.core.LogService] 2022-04-03 16:22:08,878 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.table/4.2.8 2022-04-03 16:22:08,883 [activator-1-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.log.core/4.2.8 2022-04-03 16:22:08,899 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.features.command/4.2.8 2022-04-03 16:22:08,927 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.features.command/4.2.8 2022-04-03 16:22:08,929 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.instance.core/4.2.8 2022-04-03 16:22:08,997 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.instance.core/4.2.8 2022-04-03 16:22:08,999 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.config/4.2.8 2022-04-03 16:22:09,038 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 16:22:09,058 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.karaf.jaas.blueprint.config/4.2.8 has been started 2022-04-03 16:22:09,058 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.modules/4.2.8 2022-04-03 16:22:09,083 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:22:09,106 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:22:09,108 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Updating commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:22:09,110 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Updating commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:22:09,111 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.bundle.core/4.2.8 2022-04-03 16:22:09,151 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.bundle.core/4.2.8 2022-04-03 16:22:09,152 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.service.core/4.2.8 2022-04-03 16:22:09,168 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.service.core/4.2.8 2022-04-03 16:22:09,169 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.system.core/4.2.8 2022-04-03 16:22:09,189 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.system.core/4.2.8 2022-04-03 16:22:09,189 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.bundle.blueprintstate/4.2.8 2022-04-03 16:22:09,212 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 16:22:09,227 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 16:22:09,244 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - com.springsource.javax.activation/1.1.1 2022-04-03 16:22:09,249 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-04-03 16:22:09,284 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - com.springsource.javax.xml.stream/1.0.1 2022-04-03 16:22:09,290 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-04-03 16:22:09,373 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.bundles.jaxb-impl/2.1.6.1 2022-04-03 16:22:09,378 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.bundles.xmlbeans/2.4.0.5 2022-04-03 16:22:09,383 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.third-party/3.9.1 2022-04-03 16:22:09,391 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - uk.ac.ebi.enfin.mi.cluster/1.6.0 2022-04-03 16:22:09,395 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-04-03 16:22:09,415 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-04-03 16:22:09,434 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.commons.io/2.1.0 2022-04-03 16:22:09,440 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - javax.ws.rs-api/2.1.0 2022-04-03 16:22:09,447 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.cmdline/3.9.1 2022-04-03 16:22:09,453 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.api-bundle/3.9.1 2022-04-03 16:22:09,463 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.cmdline-impl/3.9.1 2022-04-03 16:22:09,473 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.property.internal/3.9.1 2022-04-03 16:22:09,529 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.event-impl/3.9.1 2022-04-03 16:22:09,539 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.util-impl/3.9.1 2022-04-03 16:22:09,555 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.equations-impl/3.9.1 2022-04-03 16:22:09,600 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.io.datasource-impl/3.9.1 2022-04-03 16:22:09,616 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.application-impl/3.9.1 2022-04-03 16:22:09,630 [features-3-thread-1] INFO org.cytoscape.application.userlog - Setting file directory = /home/psgendb/CytoscapeConfiguration 2022-04-03 16:22:09,631 [features-3-thread-1] INFO org.cytoscape.application.userlog - Write tracker.active.session into /home/psgendb/CytoscapeConfiguration 2022-04-03 16:22:09,645 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.swing-util-impl/3.9.1 2022-04-03 16:22:09,696 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.presentation-impl/3.9.1 2022-04-03 16:22:09,707 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.model-impl/3.9.1 2022-04-03 16:22:10,097 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.work-swing-impl/3.9.1 2022-04-03 16:22:10,142 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.work-impl/3.9.1 2022-04-03 16:22:10,161 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.view.vizmap-impl/3.9.1 2022-04-03 16:22:10,230 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.viewmodel-impl/3.9.1 2022-04-03 16:22:10,287 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-impl/3.9.1 2022-04-03 16:22:10,299 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.group-impl/3.9.1 2022-04-03 16:22:10,459 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.session-impl/3.9.1 2022-04-03 16:22:10,473 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.vizmap-gui-core-impl/3.9.1 2022-04-03 16:22:10,481 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.custom-graphics-internal/3.9.1 2022-04-03 16:22:10,723 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.ding-presentation-impl/3.9.1 2022-04-03 16:22:10,884 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-presentation-impl/3.9.1 2022-04-03 16:22:10,954 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.io-impl/3.9.1 2022-04-03 16:22:11,044 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.core-task-impl/3.9.1 2022-04-03 16:22:11,204 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.command-executor-impl/3.9.1 2022-04-03 16:22:11,262 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.swing-application-impl/3.9.1 2022-04-03 16:22:12,493 [features-3-thread-1] WARN org.cytoscape.application.userlog - The virtual key 'VK_?' does not exist. 2022-04-03 16:22:12,728 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.jobs-impl/3.9.1 2022-04-03 16:22:12,794 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.editor-impl/3.9.1 2022-04-03 16:22:12,824 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.search-impl/3.9.1 2022-04-03 16:22:12,854 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.vizmap-gui-impl/3.9.1 2022-04-03 16:22:13,251 [features-3-thread-1] INFO org.cytoscape.application.userlog - CyNetwork w/ private tables created: ID = 2 2022-04-03 16:22:13,253 [features-3-thread-1] INFO org.cytoscape.application.userlog - CyNetwork w/ private tables created: Base Graph ID = 43 2022-04-03 16:22:13,545 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.filter2-impl/3.9.1 2022-04-03 16:22:13,771 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.webservice-impl/3.9.1 2022-04-03 16:22:13,854 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.linkout-impl/3.9.1 2022-04-03 16:22:13,882 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-prefuse-impl/3.9.1 2022-04-03 16:22:13,896 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - edge-bundler/3.9.1 2022-04-03 16:22:13,913 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-cytoscape-impl/3.9.1 2022-04-03 16:22:13,942 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-import-impl/3.9.1 2022-04-03 16:22:14,438 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.graphml-impl/3.9.1 2022-04-03 16:22:14,448 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-browser-impl/3.9.1 2022-04-03 16:22:14,655 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.manual-layout-impl/3.9.1 2022-04-03 16:22:14,858 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.app-impl/3.9.1 2022-04-03 16:22:14,974 [pool-10-thread-1] INFO org.cytoscape.application.userlog - Server socket started on 127.0.0.1:2607 2022-04-03 16:22:14,990 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.scripting-impl/3.9.1 2022-04-03 16:22:15,018 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.cytoscape.scripting-impl/3.9.1 is waiting for namespace handlers [http://karaf.apache.org/xmlns/shell/v1.0.1, http://www.osgi.org/xmlns/blueprint/v1.0.1] 2022-04-03 16:22:15,019 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.gui-cmdline-parser-impl/3.9.1 2022-04-03 16:22:15,059 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.equations-functions-impl/3.9.1 2022-04-03 16:22:15,095 [features-3-thread-1] INFO org.apache.karaf.deployer.features.osgi.Activator - Deployment finished. Registering FeatureDeploymentListener 2022-04-03 16:22:16,667 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Done. 2022-04-03 16:22:16,809 [pool-9-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-04-03 16:22:16,811 [pool-9-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-04-03 16:22:16,812 [pool-9-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-04-03 16:22:17,194 [Thread-16] ERROR org.cytoscape.opencl.layout.CyActivator - No OpenCL compatible device found. Cannot register 'Prefuse Force Directed OpenCL Layout'. 2022-04-03 16:22:17,588 [pool-9-thread-1] INFO org.cytoscape.application.userlog - New network import client registered: Universal Interaction Database Client 2022-04-03 16:22:17,846 [pool-9-thread-1] INFO org.cytoscape.io.webservice.biomart.rest.BiomartRestClient - Biomart Service URL is: http://www.ensembl.org/biomart/martservice 2022-04-03 16:22:17,894 [pool-9-thread-1] INFO org.cytoscape.application.userlog - New network import client registered: BioMart Client 2022-04-03 16:22:18,072 [Task-Thread-1-Factory-0x70e5d7fd] INFO org.cytoscape.io.internal.read.GenericReaderManager - Filter returns Accepted. Need to check priority: org.cytoscape.io.internal.read.vizmap.VizmapXMLReaderFactory@22ff96df 2022-04-03 16:22:18,073 [Task-Thread-1-Factory-0x70e5d7fd] INFO org.cytoscape.io.internal.read.GenericReaderManager - Successfully found compatible ReaderFactory org.cytoscape.io.internal.read.vizmap.VizmapXMLReaderFactory@22ff96df 2022-04-03 16:22:18,085 [Task-Thread-3-Factory-0x70e5d7fd] INFO org.cytoscape.application.userlog - Custom Graphics Image property file loaded from: /home/psgendb/CytoscapeConfiguration/images3 2022-04-03 16:22:18,090 [Task-Thread-3-Factory-0x70e5d7fd] INFO org.cytoscape.application.userlog - Image loading process finished in 0.007 sec. 2022-04-03 16:22:18,091 [Task-Thread-3-Factory-0x70e5d7fd] INFO org.cytoscape.application.userlog - Currently, -1 images are available. 2022-04-03 16:22:18,940 [Task-Thread-3-Factory-0x70e5d7fd] INFO org.cytoscape.application.userlog - Image saving process finished in 0.86 sec. 2022-04-03 16:22:20,201 [pool-9-thread-1] INFO org.cytoscape.diffusion.internal.rest.RemoteLogger - No property set for cytoscape.remotelogging.senderaddressservicehostname; setting logger sender address service hostname to: http://35.197.44.209 2022-04-03 16:22:20,728 [pool-84-thread-1] INFO org.cytoscape.rest.internal.CyActivator - Initializing cyREST API server... 2022-04-03 16:22:22,527 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Examining bundle for SPI provider: org.eclipse.jetty.http 2022-04-03 16:22:22,531 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Found SPI resource: bundle://138.0:0/META-INF/services/org.eclipse.jetty.http.HttpFieldPreEncoder 2022-04-03 16:22:22,568 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Loaded SPI provider: class org.eclipse.jetty.http.Http1FieldPreEncoder 2022-04-03 16:22:22,571 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Registered service: org.apache.felix.framework.ServiceRegistrationImpl@4652ed20 2022-04-03 16:22:22,571 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Registered provider: org.eclipse.jetty.http.HttpFieldPreEncoder in bundle org.eclipse.jetty.http 2022-04-03 16:22:23,686 [pool-84-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Command registration delayed for bundle org.apache.karaf.http.core/4.2.8. Missing service: [org.apache.karaf.http.core.ProxyService, org.apache.karaf.http.core.ServletService] 2022-04-03 16:22:24,042 [activator-1-thread-2] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 16:22:24,050 [activator-1-thread-2] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 16:22:24,078 [activator-1-thread-3] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 16:22:24,302 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - Start Saving images to: /home/psgendb/CytoscapeConfiguration/images3 2022-04-03 16:22:24,305 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - ========== Image saving process finished ============= 2022-04-03 16:22:24,323 [Task-Thread-3-Factory-0x70e5d7fd] INFO org.cytoscape.application.userlog - Image saving process finished in 0.015 sec. 2022-04-03 16:22:24,428 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - #CiaoBello 2022-04-03 16:22:24,450 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.karaf.shell.core/4.2.8 2022-04-03 16:22:24,464 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.cytoscape.scripting-impl/3.9.1 2022-04-03 16:22:24,472 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 16:22:24,469 [pool-84-thread-1] ERROR org.cytoscape.rest.internal.CyActivator - Failed to initialize cyREST server. org.osgi.framework.BundleException: The framework has been shutdown. at org.apache.felix.framework.Felix.installBundle(Felix.java:2995) ~[?:?] at org.apache.felix.framework.BundleContextImpl.installBundle(BundleContextImpl.java:167) ~[?:?] at org.cytoscape.rest.internal.task.OSGiJAXRSManager.installBundleFromResource(OSGiJAXRSManager.java:266) ~[!/:?] at org.cytoscape.rest.internal.task.OSGiJAXRSManager.installBundlesFromResources(OSGiJAXRSManager.java:238) ~[!/:?] at org.cytoscape.rest.internal.task.OSGiJAXRSManager.installOSGiJAXRSBundles(OSGiJAXRSManager.java:127) ~[!/:?] at org.cytoscape.rest.internal.CyActivator.lambda$startCyREST$0(CyActivator.java:325) [!/:?] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515) [?:?] at java.util.concurrent.FutureTask.run(FutureTask.java:264) [?:?] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) [?:?] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) [?:?] at java.lang.Thread.run(Thread.java:829) [?:?] 2022-04-03 16:22:24,481 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.aries.blueprint.cm/1.3.1 2022-04-03 16:22:24,492 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.aries.blueprint.core/1.10.2 2022-04-03 16:22:24,542 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 16:22:24,602 [FelixStartLevel] INFO org.apache.aries.spifly.BaseActivator - Unregistered: org.apache.felix.framework.ServiceRegistrationImpl@4652ed20 2022-04-03 16:22:24,679 [FelixStartLevel] INFO org.cytoscape.cyndex2.internal.CyActivator - Shutting down CyNDEx-2... 2022-04-03 16:22:24,730 [FelixStartLevel] INFO org.cytoscape.rest.internal.CyActivator - Shutting down REST server... 2022-04-03 16:22:25,429 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.system.core/4.2.8 2022-04-03 16:22:25,447 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.shell.commands/4.2.8 2022-04-03 16:22:25,448 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.log.core/4.2.8 2022-04-03 16:22:25,449 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.features.command/4.2.8 2022-04-03 16:22:25,451 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.bundle.core/4.2.8 2022-04-03 16:22:25,452 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.service.core/4.2.8 2022-04-03 16:22:25,454 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.instance.core/4.2.8 2022-04-03 16:22:25,455 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 16:22:25,456 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:25:59,687 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.config.cfg 2022-04-03 16:25:59,721 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.jaas.cfg 2022-04-03 16:25:59,750 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.shell.cfg 2022-04-03 16:25:59,785 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.ops4j.pax.url.mvn.cfg 2022-04-03 16:25:59,818 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.jaas.cfg 2022-04-03 16:25:59,852 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.feature.cfg 2022-04-03 16:25:59,883 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.bundle.cfg 2022-04-03 16:26:01,302 [activator-1-thread-2] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Adding features: cytoscape-karaf/[3.9.1,3.9.1],cytoscape-gui/[3.9.1,3.9.1] 2022-04-03 16:26:02,099 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Changes to perform: 2022-04-03 16:26:02,099 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Region: root 2022-04-03 16:26:02,100 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Bundles to install: 2022-04-03 16:26:02,100 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.activation/com.springsource.javax.activation/1.1.1 2022-04-03 16:26:02,100 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.xml.stream/com.springsource.javax.xml.stream/1.0.1 2022-04-03 16:26:02,100 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/edge-bundler-impl/3.9.1 2022-04-03 16:26:02,100 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.ws.rs/javax.ws.rs-api/2.1 2022-04-03 16:26:02,101 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.api/1.0.1 2022-04-03 16:26:02,101 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.cm/1.3.1 2022-04-03 16:26:02,101 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core/1.10.2 2022-04-03 16:26:02,101 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core.compatibility/1.0.0 2022-04-03 16:26:02,101 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.proxy/org.apache.aries.proxy/1.1.6 2022-04-03 16:26:02,101 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:commons-io/commons-io/2.1 2022-04-03 16:26:02,102 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.blueprintstate/4.2.8 2022-04-03 16:26:02,102 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.core/4.2.8 2022-04-03 16:26:02,102 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.blueprint/4.2.8 2022-04-03 16:26:02,102 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.features/4.2.8 2022-04-03 16:26:02,102 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.boot/4.2.8 2022-04-03 16:26:02,102 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 16:26:02,103 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.features/org.apache.karaf.features.command/4.2.8 2022-04-03 16:26:02,103 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.instance/org.apache.karaf.instance.core/4.2.8 2022-04-03 16:26:02,103 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas.blueprint/org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 16:26:02,103 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:26:02,103 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.config/4.2.8 2022-04-03 16:26:02,104 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.modules/4.2.8 2022-04-03 16:26:02,104 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.log/org.apache.karaf.log.core/4.2.8 2022-04-03 16:26:02,104 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.service/org.apache.karaf.service.core/4.2.8 2022-04-03 16:26:02,104 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.commands/4.2.8 2022-04-03 16:26:02,104 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.console/4.2.8 2022-04-03 16:26:02,104 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.core/4.2.8 2022-04-03 16:26:02,105 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.table/4.2.8 2022-04-03 16:26:02,105 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.system/org.apache.karaf.system.core/4.2.8 2022-04-03 16:26:02,105 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.jaxb-impl/2.1.6_1 2022-04-03 16:26:02,105 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.xmlbeans/2.4.0_5 2022-04-03 16:26:02,105 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-04-03 16:26:02,105 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-04-03 16:26:02,106 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-04-03 16:26:02,106 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-04-03 16:26:02,106 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/api-bundle/3.9.1 2022-04-03 16:26:02,106 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/app-impl/3.9.1 2022-04-03 16:26:02,106 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/application-impl/3.9.1 2022-04-03 16:26:02,106 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/application-metadata-impl/3.9.1 2022-04-03 16:26:02,107 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/cmdline/3.9.1 2022-04-03 16:26:02,107 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/cmdline-impl/3.9.1 2022-04-03 16:26:02,107 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/command-executor-impl/3.9.1 2022-04-03 16:26:02,107 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/core-task-impl/3.9.1 2022-04-03 16:26:02,107 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/custom-graphics-internal/3.9.1 2022-04-03 16:26:02,107 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/diagnostics-impl/3.9.1 2022-04-03 16:26:02,108 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/ding-presentation-impl/3.9.1 2022-04-03 16:26:02,108 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/editor-impl/3.9.1 2022-04-03 16:26:02,108 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-functions-impl/3.9.1 2022-04-03 16:26:02,108 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-impl/3.9.1 2022-04-03 16:26:02,108 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/event-impl/3.9.1 2022-04-03 16:26:02,108 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/filter2-impl/3.9.1 2022-04-03 16:26:02,109 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/graphml-impl/3.9.1 2022-04-03 16:26:02,109 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/group-impl/3.9.1 2022-04-03 16:26:02,109 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/gui-cmdline-parser-impl/3.9.1 2022-04-03 16:26:02,109 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/io-impl/3.9.1 2022-04-03 16:26:02,109 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/datasource-impl/3.9.1 2022-04-03 16:26:02,109 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/jobs-impl/3.9.1 2022-04-03 16:26:02,110 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-cytoscape-impl/3.9.1 2022-04-03 16:26:02,110 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-impl/3.9.1 2022-04-03 16:26:02,110 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-prefuse-impl/3.9.1 2022-04-03 16:26:02,110 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/linkout-impl/3.9.1 2022-04-03 16:26:02,110 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/manual-layout-impl/3.9.1 2022-04-03 16:26:02,110 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/model-impl/3.9.1 2022-04-03 16:26:02,111 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/presentation-impl/3.9.1 2022-04-03 16:26:02,111 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/property-impl/3.9.1 2022-04-03 16:26:02,111 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/scripting-impl/3.9.1 2022-04-03 16:26:02,111 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/search-impl/3.9.1 2022-04-03 16:26:02,111 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/session-impl/3.9.1 2022-04-03 16:26:02,111 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/splash-updater-impl/3.9.1 2022-04-03 16:26:02,111 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-application-impl/3.9.1 2022-04-03 16:26:02,112 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-util-impl/3.9.1 2022-04-03 16:26:02,112 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-browser-impl/3.9.1 2022-04-03 16:26:02,112 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-import-impl/3.9.1 2022-04-03 16:26:02,112 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-presentation-impl/3.9.1 2022-04-03 16:26:02,112 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/third-party/3.9.1 2022-04-03 16:26:02,112 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/util-impl/3.9.1 2022-04-03 16:26:02,113 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-impl/3.9.1 2022-04-03 16:26:02,113 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/viewmodel-impl/3.9.1 2022-04-03 16:26:02,113 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-core-impl/3.9.1 2022-04-03 16:26:02,113 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-impl/3.9.1 2022-04-03 16:26:02,113 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/webservice-impl/3.9.1 2022-04-03 16:26:02,113 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-impl/3.9.1 2022-04-03 16:26:02,113 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-swing-impl/3.9.1 2022-04-03 16:26:02,114 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-builtins/3.13.2 2022-04-03 16:26:02,114 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-reader/3.13.2 2022-04-03 16:26:02,114 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal/3.13.2 2022-04-03 16:26:02,114 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal-jansi/3.13.2 2022-04-03 16:26:02,114 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm/7.2 2022-04-03 16:26:02,114 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-commons/7.2 2022-04-03 16:26:02,115 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-tree/7.2 2022-04-03 16:26:02,115 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-analysis/7.2 2022-04-03 16:26:02,115 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-util/7.2 2022-04-03 16:26:02,115 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:cytoscape-temp/uk.ac.ebi.enfin.mi.cluster.micluster/1.6 2022-04-03 16:26:02,118 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Installing bundles: 2022-04-03 16:26:02,118 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.activation/com.springsource.javax.activation/1.1.1 2022-04-03 16:26:02,150 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.xml.stream/com.springsource.javax.xml.stream/1.0.1 2022-04-03 16:26:02,180 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/edge-bundler-impl/3.9.1 2022-04-03 16:26:02,214 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.ws.rs/javax.ws.rs-api/2.1 2022-04-03 16:26:02,250 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.api/1.0.1 2022-04-03 16:26:02,285 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.cm/1.3.1 2022-04-03 16:26:02,322 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core/1.10.2 2022-04-03 16:26:02,372 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core.compatibility/1.0.0 2022-04-03 16:26:02,410 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.proxy/org.apache.aries.proxy/1.1.6 2022-04-03 16:26:02,451 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:commons-io/commons-io/2.1 2022-04-03 16:26:02,529 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.blueprintstate/4.2.8 2022-04-03 16:26:02,553 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.core/4.2.8 2022-04-03 16:26:02,584 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.blueprint/4.2.8 2022-04-03 16:26:02,612 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.features/4.2.8 2022-04-03 16:26:02,637 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.boot/4.2.8 2022-04-03 16:26:02,663 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 16:26:02,688 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.features/org.apache.karaf.features.command/4.2.8 2022-04-03 16:26:02,715 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.instance/org.apache.karaf.instance.core/4.2.8 2022-04-03 16:26:02,747 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas.blueprint/org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 16:26:02,772 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:26:02,799 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.config/4.2.8 2022-04-03 16:26:02,824 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.modules/4.2.8 2022-04-03 16:26:02,876 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.log/org.apache.karaf.log.core/4.2.8 2022-04-03 16:26:02,905 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.service/org.apache.karaf.service.core/4.2.8 2022-04-03 16:26:02,929 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.commands/4.2.8 2022-04-03 16:26:02,962 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.console/4.2.8 2022-04-03 16:26:02,998 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.core/4.2.8 2022-04-03 16:26:03,035 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.table/4.2.8 2022-04-03 16:26:03,062 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.system/org.apache.karaf.system.core/4.2.8 2022-04-03 16:26:03,098 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.jaxb-impl/2.1.6_1 2022-04-03 16:26:03,142 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.xmlbeans/2.4.0_5 2022-04-03 16:26:03,213 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-04-03 16:26:03,241 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-04-03 16:26:03,270 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-04-03 16:26:03,300 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-04-03 16:26:03,330 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/api-bundle/3.9.1 2022-04-03 16:26:03,378 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/app-impl/3.9.1 2022-04-03 16:26:03,421 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/application-impl/3.9.1 2022-04-03 16:26:03,447 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/application-metadata-impl/3.9.1 2022-04-03 16:26:03,472 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/cmdline/3.9.1 2022-04-03 16:26:03,496 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/cmdline-impl/3.9.1 2022-04-03 16:26:03,523 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/command-executor-impl/3.9.1 2022-04-03 16:26:03,553 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/core-task-impl/3.9.1 2022-04-03 16:26:03,611 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/custom-graphics-internal/3.9.1 2022-04-03 16:26:03,658 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/diagnostics-impl/3.9.1 2022-04-03 16:26:03,683 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/ding-presentation-impl/3.9.1 2022-04-03 16:26:03,733 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/editor-impl/3.9.1 2022-04-03 16:26:03,761 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-functions-impl/3.9.1 2022-04-03 16:26:03,785 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-impl/3.9.1 2022-04-03 16:26:03,821 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/event-impl/3.9.1 2022-04-03 16:26:03,847 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/filter2-impl/3.9.1 2022-04-03 16:26:03,881 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/graphml-impl/3.9.1 2022-04-03 16:26:03,908 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/group-impl/3.9.1 2022-04-03 16:26:03,939 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/gui-cmdline-parser-impl/3.9.1 2022-04-03 16:26:03,961 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/io-impl/3.9.1 2022-04-03 16:26:03,999 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/datasource-impl/3.9.1 2022-04-03 16:26:04,023 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/jobs-impl/3.9.1 2022-04-03 16:26:04,046 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-cytoscape-impl/3.9.1 2022-04-03 16:26:04,079 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-impl/3.9.1 2022-04-03 16:26:04,111 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-prefuse-impl/3.9.1 2022-04-03 16:26:04,137 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/linkout-impl/3.9.1 2022-04-03 16:26:04,161 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/manual-layout-impl/3.9.1 2022-04-03 16:26:04,188 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/model-impl/3.9.1 2022-04-03 16:26:04,415 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/presentation-impl/3.9.1 2022-04-03 16:26:04,439 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/property-impl/3.9.1 2022-04-03 16:26:04,460 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/scripting-impl/3.9.1 2022-04-03 16:26:04,484 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/search-impl/3.9.1 2022-04-03 16:26:04,507 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/session-impl/3.9.1 2022-04-03 16:26:04,530 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/splash-updater-impl/3.9.1 2022-04-03 16:26:04,555 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-application-impl/3.9.1 2022-04-03 16:26:04,640 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-util-impl/3.9.1 2022-04-03 16:26:04,672 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-browser-impl/3.9.1 2022-04-03 16:26:04,706 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-import-impl/3.9.1 2022-04-03 16:26:05,044 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-presentation-impl/3.9.1 2022-04-03 16:26:05,145 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/third-party/3.9.1 2022-04-03 16:26:05,447 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/util-impl/3.9.1 2022-04-03 16:26:05,477 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-impl/3.9.1 2022-04-03 16:26:05,504 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/viewmodel-impl/3.9.1 2022-04-03 16:26:05,546 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-core-impl/3.9.1 2022-04-03 16:26:05,568 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-impl/3.9.1 2022-04-03 16:26:05,604 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/webservice-impl/3.9.1 2022-04-03 16:26:05,631 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-impl/3.9.1 2022-04-03 16:26:05,654 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-swing-impl/3.9.1 2022-04-03 16:26:05,683 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-builtins/3.13.2 2022-04-03 16:26:05,722 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-reader/3.13.2 2022-04-03 16:26:05,755 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal/3.13.2 2022-04-03 16:26:05,792 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal-jansi/3.13.2 2022-04-03 16:26:05,821 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm/7.2 2022-04-03 16:26:05,847 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-commons/7.2 2022-04-03 16:26:05,875 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-tree/7.2 2022-04-03 16:26:05,904 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-analysis/7.2 2022-04-03 16:26:05,929 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-util/7.2 2022-04-03 16:26:05,953 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:cytoscape-temp/uk.ac.ebi.enfin.mi.cluster.micluster/1.6 2022-04-03 16:26:07,413 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Starting bundles: 2022-04-03 16:26:07,416 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.splash-updater-impl/3.9.1 2022-04-03 16:26:07,427 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.diagnostics-impl/3.9.1 2022-04-03 16:26:07,441 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm/7.2.0 2022-04-03 16:26:07,446 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.tree/7.2.0 2022-04-03 16:26:07,450 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.tree.analysis/7.2.0 2022-04-03 16:26:07,455 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.api/1.0.1 2022-04-03 16:26:07,460 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.commons/7.2.0 2022-04-03 16:26:07,466 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.proxy/1.1.6 2022-04-03 16:26:07,481 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.core/1.10.2 2022-04-03 16:26:07,538 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintExtender - No quiesce support is available, so blueprint components will not participate in quiesce operations 2022-04-03 16:26:07,747 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.aries.blueprint.core/1.10.2 has been started 2022-04-03 16:26:07,747 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.util/7.2.0 2022-04-03 16:26:07,754 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.cm/1.3.1 2022-04-03 16:26:07,781 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.aries.blueprint.cm/1.3.1 has been started 2022-04-03 16:26:07,782 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.deployer.blueprint/4.2.8 2022-04-03 16:26:07,799 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.deployer.features/4.2.8 2022-04-03 16:26:07,822 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.config/4.2.8 2022-04-03 16:26:07,843 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.terminal/3.13.2 2022-04-03 16:26:07,847 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.reader/3.13.2 2022-04-03 16:26:07,853 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.builtins/3.13.2 2022-04-03 16:26:07,858 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.core/4.2.8 2022-04-03 16:26:08,355 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.karaf.shell.core/4.2.8 has been started 2022-04-03 16:26:08,355 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 16:26:08,396 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 16:26:08,398 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.log.core/4.2.8 2022-04-03 16:26:08,439 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.log.core/4.2.8 2022-04-03 16:26:08,440 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.modules/4.2.8 2022-04-03 16:26:08,459 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.table/4.2.8 2022-04-03 16:26:08,467 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:26:08,495 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:26:08,498 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Updating commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:26:08,500 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Updating commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:26:08,502 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.bundle.core/4.2.8 2022-04-03 16:26:08,558 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.bundle.core/4.2.8 2022-04-03 16:26:08,560 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.bundle.blueprintstate/4.2.8 2022-04-03 16:26:08,589 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.commands/4.2.8 2022-04-03 16:26:08,616 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.shell.commands/4.2.8 2022-04-03 16:26:08,623 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.system.core/4.2.8 2022-04-03 16:26:08,645 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.system.core/4.2.8 2022-04-03 16:26:08,646 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.features.command/4.2.8 2022-04-03 16:26:08,671 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.features.command/4.2.8 2022-04-03 16:26:08,673 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.instance.core/4.2.8 2022-04-03 16:26:08,708 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.instance.core/4.2.8 2022-04-03 16:26:08,709 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 16:26:08,730 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.karaf.jaas.blueprint.config/4.2.8 has been started 2022-04-03 16:26:08,731 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.service.core/4.2.8 2022-04-03 16:26:08,749 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.service.core/4.2.8 2022-04-03 16:26:08,761 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - com.springsource.javax.xml.stream/1.0.1 2022-04-03 16:26:08,767 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-04-03 16:26:08,788 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.bundles.xmlbeans/2.4.0.5 2022-04-03 16:26:08,794 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.commons.io/2.1.0 2022-04-03 16:26:08,799 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - com.springsource.javax.activation/1.1.1 2022-04-03 16:26:08,805 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-04-03 16:26:08,823 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.bundles.jaxb-impl/2.1.6.1 2022-04-03 16:26:08,829 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.third-party/3.9.1 2022-04-03 16:26:08,838 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - uk.ac.ebi.enfin.mi.cluster/1.6.0 2022-04-03 16:26:08,847 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-04-03 16:26:08,866 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-04-03 16:26:08,886 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - javax.ws.rs-api/2.1.0 2022-04-03 16:26:08,893 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.cmdline/3.9.1 2022-04-03 16:26:08,899 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.api-bundle/3.9.1 2022-04-03 16:26:08,908 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.cmdline-impl/3.9.1 2022-04-03 16:26:08,917 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.property.internal/3.9.1 2022-04-03 16:26:08,972 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.event-impl/3.9.1 2022-04-03 16:26:08,983 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.util-impl/3.9.1 2022-04-03 16:26:09,000 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.io.datasource-impl/3.9.1 2022-04-03 16:26:09,019 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.equations-impl/3.9.1 2022-04-03 16:26:09,061 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.application-impl/3.9.1 2022-04-03 16:26:09,074 [features-3-thread-1] INFO org.cytoscape.application.userlog - Setting file directory = /home/psgendb/CytoscapeConfiguration 2022-04-03 16:26:09,076 [features-3-thread-1] INFO org.cytoscape.application.userlog - Write tracker.active.session into /home/psgendb/CytoscapeConfiguration 2022-04-03 16:26:09,091 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.swing-util-impl/3.9.1 2022-04-03 16:26:09,147 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.model-impl/3.9.1 2022-04-03 16:26:09,537 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.work-swing-impl/3.9.1 2022-04-03 16:26:09,588 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.work-impl/3.9.1 2022-04-03 16:26:09,607 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.presentation-impl/3.9.1 2022-04-03 16:26:09,620 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.viewmodel-impl/3.9.1 2022-04-03 16:26:09,670 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.view.vizmap-impl/3.9.1 2022-04-03 16:26:09,745 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-impl/3.9.1 2022-04-03 16:26:09,758 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.group-impl/3.9.1 2022-04-03 16:26:09,922 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.vizmap-gui-core-impl/3.9.1 2022-04-03 16:26:09,930 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.session-impl/3.9.1 2022-04-03 16:26:09,946 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.custom-graphics-internal/3.9.1 2022-04-03 16:26:10,181 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-presentation-impl/3.9.1 2022-04-03 16:26:10,280 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.ding-presentation-impl/3.9.1 2022-04-03 16:26:10,422 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.io-impl/3.9.1 2022-04-03 16:26:10,507 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.core-task-impl/3.9.1 2022-04-03 16:26:10,684 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.command-executor-impl/3.9.1 2022-04-03 16:26:10,743 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.swing-application-impl/3.9.1 2022-04-03 16:26:11,954 [features-3-thread-1] WARN org.cytoscape.application.userlog - The virtual key 'VK_?' does not exist. 2022-04-03 16:26:12,180 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.jobs-impl/3.9.1 2022-04-03 16:26:12,258 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-import-impl/3.9.1 2022-04-03 16:26:12,748 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-browser-impl/3.9.1 2022-04-03 16:26:13,010 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.filter2-impl/3.9.1 2022-04-03 16:26:13,255 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.manual-layout-impl/3.9.1 2022-04-03 16:26:13,391 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-cytoscape-impl/3.9.1 2022-04-03 16:26:13,422 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - edge-bundler/3.9.1 2022-04-03 16:26:13,455 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.editor-impl/3.9.1 2022-04-03 16:26:13,480 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.webservice-impl/3.9.1 2022-04-03 16:26:13,556 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.vizmap-gui-impl/3.9.1 2022-04-03 16:26:13,903 [features-3-thread-1] INFO org.cytoscape.application.userlog - CyNetwork w/ private tables created: ID = 2 2022-04-03 16:26:13,904 [features-3-thread-1] INFO org.cytoscape.application.userlog - CyNetwork w/ private tables created: Base Graph ID = 43 2022-04-03 16:26:14,164 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.linkout-impl/3.9.1 2022-04-03 16:26:14,191 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.search-impl/3.9.1 2022-04-03 16:26:14,225 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.graphml-impl/3.9.1 2022-04-03 16:26:14,237 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-prefuse-impl/3.9.1 2022-04-03 16:26:14,252 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.app-impl/3.9.1 2022-04-03 16:26:14,368 [pool-10-thread-1] INFO org.cytoscape.application.userlog - Server socket started on 127.0.0.1:2607 2022-04-03 16:26:14,384 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.scripting-impl/3.9.1 2022-04-03 16:26:14,410 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.cytoscape.scripting-impl/3.9.1 is waiting for namespace handlers [http://karaf.apache.org/xmlns/shell/v1.0.1, http://www.osgi.org/xmlns/blueprint/v1.0.1] 2022-04-03 16:26:14,411 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.gui-cmdline-parser-impl/3.9.1 2022-04-03 16:26:14,430 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.equations-functions-impl/3.9.1 2022-04-03 16:26:14,447 [features-3-thread-1] INFO org.apache.karaf.deployer.features.osgi.Activator - Deployment finished. Registering FeatureDeploymentListener 2022-04-03 16:26:15,926 [pool-9-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-04-03 16:26:15,928 [pool-9-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-04-03 16:26:15,929 [pool-9-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-04-03 16:26:15,967 [Thread-16] ERROR org.cytoscape.opencl.layout.CyActivator - No OpenCL compatible device found. Cannot register 'Prefuse Force Directed OpenCL Layout'. 2022-04-03 16:26:16,127 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Done. 2022-04-03 16:26:16,390 [pool-9-thread-1] INFO org.cytoscape.io.webservice.biomart.rest.BiomartRestClient - Biomart Service URL is: http://www.ensembl.org/biomart/martservice 2022-04-03 16:26:16,439 [pool-9-thread-1] INFO org.cytoscape.application.userlog - New network import client registered: BioMart Client 2022-04-03 16:26:16,711 [pool-9-thread-1] INFO org.cytoscape.application.userlog - New network import client registered: Universal Interaction Database Client 2022-04-03 16:26:17,566 [Task-Thread-1-Factory-0x4f9a8913] INFO org.cytoscape.io.internal.read.GenericReaderManager - Filter returns Accepted. Need to check priority: org.cytoscape.io.internal.read.vizmap.VizmapXMLReaderFactory@48f1a3c2 2022-04-03 16:26:17,567 [Task-Thread-1-Factory-0x4f9a8913] INFO org.cytoscape.io.internal.read.GenericReaderManager - Successfully found compatible ReaderFactory org.cytoscape.io.internal.read.vizmap.VizmapXMLReaderFactory@48f1a3c2 2022-04-03 16:26:17,600 [Task-Thread-3-Factory-0x4f9a8913] INFO org.cytoscape.application.userlog - Custom Graphics Image property file loaded from: /home/psgendb/CytoscapeConfiguration/images3 2022-04-03 16:26:17,606 [Task-Thread-3-Factory-0x4f9a8913] INFO org.cytoscape.application.userlog - Image loading process finished in 0.007 sec. 2022-04-03 16:26:17,607 [Task-Thread-3-Factory-0x4f9a8913] INFO org.cytoscape.application.userlog - Currently, -1 images are available. 2022-04-03 16:26:18,223 [Task-Thread-3-Factory-0x4f9a8913] INFO org.cytoscape.application.userlog - Image saving process finished in 0.639 sec. 2022-04-03 16:26:19,832 [pool-9-thread-1] INFO org.cytoscape.diffusion.internal.rest.RemoteLogger - No property set for cytoscape.remotelogging.senderaddressservicehostname; setting logger sender address service hostname to: http://35.197.44.209 2022-04-03 16:26:20,126 [pool-84-thread-1] INFO org.cytoscape.rest.internal.CyActivator - Initializing cyREST API server... 2022-04-03 16:26:22,161 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Examining bundle for SPI provider: org.eclipse.jetty.http 2022-04-03 16:26:22,165 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Found SPI resource: bundle://138.0:0/META-INF/services/org.eclipse.jetty.http.HttpFieldPreEncoder 2022-04-03 16:26:22,202 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Loaded SPI provider: class org.eclipse.jetty.http.Http1FieldPreEncoder 2022-04-03 16:26:22,204 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Registered service: org.apache.felix.framework.ServiceRegistrationImpl@7bb3a77a 2022-04-03 16:26:22,205 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Registered provider: org.eclipse.jetty.http.HttpFieldPreEncoder in bundle org.eclipse.jetty.http 2022-04-03 16:26:23,219 [pool-84-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Command registration delayed for bundle org.apache.karaf.http.core/4.2.8. Missing service: [org.apache.karaf.http.core.ProxyService, org.apache.karaf.http.core.ServletService] 2022-04-03 16:26:23,313 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - Start Saving images to: /home/psgendb/CytoscapeConfiguration/images3 2022-04-03 16:26:23,317 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - ========== Image saving process finished ============= 2022-04-03 16:26:23,332 [Task-Thread-3-Factory-0x4f9a8913] INFO org.cytoscape.application.userlog - Image saving process finished in 0.011 sec. 2022-04-03 16:26:23,436 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - #CiaoBello 2022-04-03 16:26:23,469 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.karaf.shell.core/4.2.8 2022-04-03 16:26:23,490 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.cytoscape.scripting-impl/3.9.1 2022-04-03 16:26:23,498 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 16:26:23,508 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.aries.blueprint.cm/1.3.1 2022-04-03 16:26:23,522 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.aries.blueprint.core/1.10.2 2022-04-03 16:26:23,524 [pool-84-thread-1] ERROR org.cytoscape.rest.internal.CyActivator - Failed to initialize cyREST server. org.osgi.framework.BundleException: The framework has been shutdown. at org.apache.felix.framework.Felix.installBundle(Felix.java:2995) ~[?:?] at org.apache.felix.framework.BundleContextImpl.installBundle(BundleContextImpl.java:167) ~[?:?] at org.cytoscape.rest.internal.task.OSGiJAXRSManager.installBundleFromResource(OSGiJAXRSManager.java:266) ~[!/:?] at org.cytoscape.rest.internal.task.OSGiJAXRSManager.installBundlesFromResources(OSGiJAXRSManager.java:238) ~[!/:?] at org.cytoscape.rest.internal.task.OSGiJAXRSManager.installOSGiJAXRSBundles(OSGiJAXRSManager.java:126) ~[!/:?] at org.cytoscape.rest.internal.CyActivator.lambda$startCyREST$0(CyActivator.java:325) [!/:?] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515) [?:?] at java.util.concurrent.FutureTask.run(FutureTask.java:264) [?:?] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) [?:?] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) [?:?] at java.lang.Thread.run(Thread.java:829) [?:?] 2022-04-03 16:26:23,680 [FelixStartLevel] INFO org.apache.aries.spifly.BaseActivator - Unregistered: org.apache.felix.framework.ServiceRegistrationImpl@7bb3a77a 2022-04-03 16:26:23,751 [FelixStartLevel] INFO org.cytoscape.cyndex2.internal.CyActivator - Shutting down CyNDEx-2... 2022-04-03 16:26:23,805 [FelixStartLevel] INFO org.cytoscape.rest.internal.CyActivator - Shutting down REST server... 2022-04-03 16:26:24,411 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.system.core/4.2.8 2022-04-03 16:26:24,426 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 16:26:24,427 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.shell.commands/4.2.8 2022-04-03 16:26:24,428 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.log.core/4.2.8 2022-04-03 16:26:24,430 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.instance.core/4.2.8 2022-04-03 16:26:24,431 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.service.core/4.2.8 2022-04-03 16:26:24,432 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.bundle.core/4.2.8 2022-04-03 16:26:24,433 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 16:26:24,435 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.features.command/4.2.8 2022-04-03 18:08:54,728 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from jmx.acl.cfg 2022-04-03 18:08:54,766 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.config.cfg 2022-04-03 18:08:54,796 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.jaas.cfg 2022-04-03 18:08:54,834 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.shell.cfg 2022-04-03 18:08:54,868 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.ops4j.pax.url.mvn.cfg 2022-04-03 18:08:54,904 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.jaas.cfg 2022-04-03 18:08:54,945 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.feature.cfg 2022-04-03 18:08:54,976 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.bundle.cfg 2022-04-03 18:08:56,378 [activator-1-thread-2] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Adding features: cytoscape-karaf/[3.9.1,3.9.1],cytoscape-gui/[3.9.1,3.9.1] 2022-04-03 18:08:57,292 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Changes to perform: 2022-04-03 18:08:57,292 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Region: root 2022-04-03 18:08:57,293 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Bundles to install: 2022-04-03 18:08:57,293 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.activation/com.springsource.javax.activation/1.1.1 2022-04-03 18:08:57,293 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.xml.stream/com.springsource.javax.xml.stream/1.0.1 2022-04-03 18:08:57,293 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/edge-bundler-impl/3.9.1 2022-04-03 18:08:57,293 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.ws.rs/javax.ws.rs-api/2.1 2022-04-03 18:08:57,294 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.api/1.0.1 2022-04-03 18:08:57,294 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.cm/1.3.1 2022-04-03 18:08:57,294 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core/1.10.2 2022-04-03 18:08:57,294 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core.compatibility/1.0.0 2022-04-03 18:08:57,294 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.proxy/org.apache.aries.proxy/1.1.6 2022-04-03 18:08:57,294 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:commons-io/commons-io/2.1 2022-04-03 18:08:57,295 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.blueprintstate/4.2.8 2022-04-03 18:08:57,295 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.core/4.2.8 2022-04-03 18:08:57,295 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.blueprint/4.2.8 2022-04-03 18:08:57,295 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.features/4.2.8 2022-04-03 18:08:57,295 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.boot/4.2.8 2022-04-03 18:08:57,296 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 18:08:57,296 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.features/org.apache.karaf.features.command/4.2.8 2022-04-03 18:08:57,296 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.instance/org.apache.karaf.instance.core/4.2.8 2022-04-03 18:08:57,296 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas.blueprint/org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 18:08:57,297 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:08:57,297 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.config/4.2.8 2022-04-03 18:08:57,297 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.modules/4.2.8 2022-04-03 18:08:57,297 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.log/org.apache.karaf.log.core/4.2.8 2022-04-03 18:08:57,297 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.service/org.apache.karaf.service.core/4.2.8 2022-04-03 18:08:57,298 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.commands/4.2.8 2022-04-03 18:08:57,298 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.console/4.2.8 2022-04-03 18:08:57,298 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.core/4.2.8 2022-04-03 18:08:57,298 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.table/4.2.8 2022-04-03 18:08:57,298 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.system/org.apache.karaf.system.core/4.2.8 2022-04-03 18:08:57,298 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.jaxb-impl/2.1.6_1 2022-04-03 18:08:57,299 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.xmlbeans/2.4.0_5 2022-04-03 18:08:57,299 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-04-03 18:08:57,299 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-04-03 18:08:57,299 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-04-03 18:08:57,299 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-04-03 18:08:57,300 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/api-bundle/3.9.1 2022-04-03 18:08:57,300 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/app-impl/3.9.1 2022-04-03 18:08:57,300 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/application-impl/3.9.1 2022-04-03 18:08:57,300 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/application-metadata-impl/3.9.1 2022-04-03 18:08:57,300 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/cmdline/3.9.1 2022-04-03 18:08:57,301 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/cmdline-impl/3.9.1 2022-04-03 18:08:57,301 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/command-executor-impl/3.9.1 2022-04-03 18:08:57,301 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/core-task-impl/3.9.1 2022-04-03 18:08:57,301 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/custom-graphics-internal/3.9.1 2022-04-03 18:08:57,301 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/diagnostics-impl/3.9.1 2022-04-03 18:08:57,301 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/ding-presentation-impl/3.9.1 2022-04-03 18:08:57,301 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/editor-impl/3.9.1 2022-04-03 18:08:57,302 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-functions-impl/3.9.1 2022-04-03 18:08:57,302 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-impl/3.9.1 2022-04-03 18:08:57,302 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/event-impl/3.9.1 2022-04-03 18:08:57,302 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/filter2-impl/3.9.1 2022-04-03 18:08:57,302 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/graphml-impl/3.9.1 2022-04-03 18:08:57,302 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/group-impl/3.9.1 2022-04-03 18:08:57,303 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/gui-cmdline-parser-impl/3.9.1 2022-04-03 18:08:57,303 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/io-impl/3.9.1 2022-04-03 18:08:57,303 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/datasource-impl/3.9.1 2022-04-03 18:08:57,303 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/jobs-impl/3.9.1 2022-04-03 18:08:57,303 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-cytoscape-impl/3.9.1 2022-04-03 18:08:57,304 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-impl/3.9.1 2022-04-03 18:08:57,304 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-prefuse-impl/3.9.1 2022-04-03 18:08:57,304 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/linkout-impl/3.9.1 2022-04-03 18:08:57,304 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/manual-layout-impl/3.9.1 2022-04-03 18:08:57,304 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/model-impl/3.9.1 2022-04-03 18:08:57,305 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/presentation-impl/3.9.1 2022-04-03 18:08:57,305 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/property-impl/3.9.1 2022-04-03 18:08:57,305 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/scripting-impl/3.9.1 2022-04-03 18:08:57,305 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/search-impl/3.9.1 2022-04-03 18:08:57,305 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/session-impl/3.9.1 2022-04-03 18:08:57,305 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/splash-updater-impl/3.9.1 2022-04-03 18:08:57,306 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-application-impl/3.9.1 2022-04-03 18:08:57,306 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-util-impl/3.9.1 2022-04-03 18:08:57,306 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-browser-impl/3.9.1 2022-04-03 18:08:57,307 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-import-impl/3.9.1 2022-04-03 18:08:57,308 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-presentation-impl/3.9.1 2022-04-03 18:08:57,308 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/third-party/3.9.1 2022-04-03 18:08:57,308 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/util-impl/3.9.1 2022-04-03 18:08:57,309 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-impl/3.9.1 2022-04-03 18:08:57,309 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/viewmodel-impl/3.9.1 2022-04-03 18:08:57,309 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-core-impl/3.9.1 2022-04-03 18:08:57,309 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-impl/3.9.1 2022-04-03 18:08:57,310 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/webservice-impl/3.9.1 2022-04-03 18:08:57,310 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-impl/3.9.1 2022-04-03 18:08:57,310 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-swing-impl/3.9.1 2022-04-03 18:08:57,311 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-builtins/3.13.2 2022-04-03 18:08:57,311 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-reader/3.13.2 2022-04-03 18:08:57,311 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal/3.13.2 2022-04-03 18:08:57,312 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal-jansi/3.13.2 2022-04-03 18:08:57,312 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm/7.2 2022-04-03 18:08:57,312 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-commons/7.2 2022-04-03 18:08:57,312 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-tree/7.2 2022-04-03 18:08:57,312 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-analysis/7.2 2022-04-03 18:08:57,313 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-util/7.2 2022-04-03 18:08:57,313 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:cytoscape-temp/uk.ac.ebi.enfin.mi.cluster.micluster/1.6 2022-04-03 18:08:57,316 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Installing bundles: 2022-04-03 18:08:57,317 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.activation/com.springsource.javax.activation/1.1.1 2022-04-03 18:08:57,359 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.xml.stream/com.springsource.javax.xml.stream/1.0.1 2022-04-03 18:08:57,387 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/edge-bundler-impl/3.9.1 2022-04-03 18:08:57,423 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.ws.rs/javax.ws.rs-api/2.1 2022-04-03 18:08:57,454 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.api/1.0.1 2022-04-03 18:08:57,479 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.cm/1.3.1 2022-04-03 18:08:57,509 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core/1.10.2 2022-04-03 18:08:57,547 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core.compatibility/1.0.0 2022-04-03 18:08:57,572 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.proxy/org.apache.aries.proxy/1.1.6 2022-04-03 18:08:57,604 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:commons-io/commons-io/2.1 2022-04-03 18:08:57,636 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.blueprintstate/4.2.8 2022-04-03 18:08:57,658 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.core/4.2.8 2022-04-03 18:08:57,692 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.blueprint/4.2.8 2022-04-03 18:08:57,724 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.features/4.2.8 2022-04-03 18:08:57,749 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.boot/4.2.8 2022-04-03 18:08:57,778 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 18:08:57,804 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.features/org.apache.karaf.features.command/4.2.8 2022-04-03 18:08:57,838 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.instance/org.apache.karaf.instance.core/4.2.8 2022-04-03 18:08:57,872 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas.blueprint/org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 18:08:57,901 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:08:57,931 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.config/4.2.8 2022-04-03 18:08:57,965 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.modules/4.2.8 2022-04-03 18:08:58,018 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.log/org.apache.karaf.log.core/4.2.8 2022-04-03 18:08:58,051 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.service/org.apache.karaf.service.core/4.2.8 2022-04-03 18:08:58,079 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.commands/4.2.8 2022-04-03 18:08:58,108 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.console/4.2.8 2022-04-03 18:08:58,143 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.core/4.2.8 2022-04-03 18:08:58,184 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.table/4.2.8 2022-04-03 18:08:58,217 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.system/org.apache.karaf.system.core/4.2.8 2022-04-03 18:08:58,268 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.jaxb-impl/2.1.6_1 2022-04-03 18:08:58,318 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.xmlbeans/2.4.0_5 2022-04-03 18:08:58,391 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-04-03 18:08:58,422 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-04-03 18:08:58,448 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-04-03 18:08:58,474 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-04-03 18:08:58,504 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/api-bundle/3.9.1 2022-04-03 18:08:58,548 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/app-impl/3.9.1 2022-04-03 18:08:58,586 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/application-impl/3.9.1 2022-04-03 18:08:58,610 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/application-metadata-impl/3.9.1 2022-04-03 18:08:58,631 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/cmdline/3.9.1 2022-04-03 18:08:58,654 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/cmdline-impl/3.9.1 2022-04-03 18:08:58,679 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/command-executor-impl/3.9.1 2022-04-03 18:08:58,705 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/core-task-impl/3.9.1 2022-04-03 18:08:58,755 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/custom-graphics-internal/3.9.1 2022-04-03 18:08:58,792 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/diagnostics-impl/3.9.1 2022-04-03 18:08:58,816 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/ding-presentation-impl/3.9.1 2022-04-03 18:08:58,863 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/editor-impl/3.9.1 2022-04-03 18:08:58,893 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-functions-impl/3.9.1 2022-04-03 18:08:58,919 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-impl/3.9.1 2022-04-03 18:08:58,981 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/event-impl/3.9.1 2022-04-03 18:08:59,014 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/filter2-impl/3.9.1 2022-04-03 18:08:59,052 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/graphml-impl/3.9.1 2022-04-03 18:08:59,079 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/group-impl/3.9.1 2022-04-03 18:08:59,111 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/gui-cmdline-parser-impl/3.9.1 2022-04-03 18:08:59,135 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/io-impl/3.9.1 2022-04-03 18:08:59,173 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/datasource-impl/3.9.1 2022-04-03 18:08:59,200 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/jobs-impl/3.9.1 2022-04-03 18:08:59,229 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-cytoscape-impl/3.9.1 2022-04-03 18:08:59,265 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-impl/3.9.1 2022-04-03 18:08:59,295 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-prefuse-impl/3.9.1 2022-04-03 18:08:59,318 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/linkout-impl/3.9.1 2022-04-03 18:08:59,341 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/manual-layout-impl/3.9.1 2022-04-03 18:08:59,368 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/model-impl/3.9.1 2022-04-03 18:08:59,597 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/presentation-impl/3.9.1 2022-04-03 18:08:59,621 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/property-impl/3.9.1 2022-04-03 18:08:59,647 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/scripting-impl/3.9.1 2022-04-03 18:08:59,676 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/search-impl/3.9.1 2022-04-03 18:08:59,707 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/session-impl/3.9.1 2022-04-03 18:08:59,735 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/splash-updater-impl/3.9.1 2022-04-03 18:08:59,765 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-application-impl/3.9.1 2022-04-03 18:08:59,857 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-util-impl/3.9.1 2022-04-03 18:08:59,886 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-browser-impl/3.9.1 2022-04-03 18:08:59,917 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-import-impl/3.9.1 2022-04-03 18:09:00,171 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-presentation-impl/3.9.1 2022-04-03 18:09:00,252 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/third-party/3.9.1 2022-04-03 18:09:00,551 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/util-impl/3.9.1 2022-04-03 18:09:00,590 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-impl/3.9.1 2022-04-03 18:09:00,618 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/viewmodel-impl/3.9.1 2022-04-03 18:09:00,660 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-core-impl/3.9.1 2022-04-03 18:09:00,684 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-impl/3.9.1 2022-04-03 18:09:00,719 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/webservice-impl/3.9.1 2022-04-03 18:09:00,750 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-impl/3.9.1 2022-04-03 18:09:00,775 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-swing-impl/3.9.1 2022-04-03 18:09:00,811 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-builtins/3.13.2 2022-04-03 18:09:00,845 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-reader/3.13.2 2022-04-03 18:09:00,891 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal/3.13.2 2022-04-03 18:09:00,922 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal-jansi/3.13.2 2022-04-03 18:09:00,972 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm/7.2 2022-04-03 18:09:01,010 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-commons/7.2 2022-04-03 18:09:01,034 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-tree/7.2 2022-04-03 18:09:01,061 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-analysis/7.2 2022-04-03 18:09:01,087 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-util/7.2 2022-04-03 18:09:01,118 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:cytoscape-temp/uk.ac.ebi.enfin.mi.cluster.micluster/1.6 2022-04-03 18:09:02,721 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Starting bundles: 2022-04-03 18:09:02,725 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.diagnostics-impl/3.9.1 2022-04-03 18:09:02,736 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.splash-updater-impl/3.9.1 2022-04-03 18:09:02,749 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm/7.2.0 2022-04-03 18:09:02,755 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.tree/7.2.0 2022-04-03 18:09:02,762 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.commons/7.2.0 2022-04-03 18:09:02,767 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.proxy/1.1.6 2022-04-03 18:09:02,781 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.api/1.0.1 2022-04-03 18:09:02,786 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.core/1.10.2 2022-04-03 18:09:02,844 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintExtender - No quiesce support is available, so blueprint components will not participate in quiesce operations 2022-04-03 18:09:03,053 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.aries.blueprint.core/1.10.2 has been started 2022-04-03 18:09:03,054 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.cm/1.3.1 2022-04-03 18:09:03,084 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.aries.blueprint.cm/1.3.1 has been started 2022-04-03 18:09:03,084 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.tree.analysis/7.2.0 2022-04-03 18:09:03,090 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.util/7.2.0 2022-04-03 18:09:03,096 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.deployer.blueprint/4.2.8 2022-04-03 18:09:03,112 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.deployer.features/4.2.8 2022-04-03 18:09:03,134 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.config/4.2.8 2022-04-03 18:09:03,152 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.terminal/3.13.2 2022-04-03 18:09:03,157 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.reader/3.13.2 2022-04-03 18:09:03,162 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.builtins/3.13.2 2022-04-03 18:09:03,166 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.core/4.2.8 2022-04-03 18:09:03,685 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.karaf.shell.core/4.2.8 has been started 2022-04-03 18:09:03,686 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.system.core/4.2.8 2022-04-03 18:09:03,729 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.system.core/4.2.8 2022-04-03 18:09:03,732 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.log.core/4.2.8 2022-04-03 18:09:03,766 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.log.core/4.2.8 2022-04-03 18:09:03,767 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.bundle.core/4.2.8 2022-04-03 18:09:03,811 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.bundle.core/4.2.8 2022-04-03 18:09:03,813 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.bundle.blueprintstate/4.2.8 2022-04-03 18:09:03,840 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 18:09:03,857 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 18:09:03,857 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.table/4.2.8 2022-04-03 18:09:03,862 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.features.command/4.2.8 2022-04-03 18:09:03,889 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.features.command/4.2.8 2022-04-03 18:09:03,890 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.instance.core/4.2.8 2022-04-03 18:09:03,949 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.instance.core/4.2.8 2022-04-03 18:09:03,950 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.commands/4.2.8 2022-04-03 18:09:03,974 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.shell.commands/4.2.8 2022-04-03 18:09:03,975 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 18:09:03,992 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.karaf.jaas.blueprint.config/4.2.8 has been started 2022-04-03 18:09:03,993 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.service.core/4.2.8 2022-04-03 18:09:04,011 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.service.core/4.2.8 2022-04-03 18:09:04,012 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.modules/4.2.8 2022-04-03 18:09:04,034 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:09:04,055 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:09:04,057 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Updating commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:09:04,059 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Updating commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:09:04,071 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - com.springsource.javax.xml.stream/1.0.1 2022-04-03 18:09:04,078 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - com.springsource.javax.activation/1.1.1 2022-04-03 18:09:04,084 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-04-03 18:09:04,105 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-04-03 18:09:04,122 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.bundles.jaxb-impl/2.1.6.1 2022-04-03 18:09:04,128 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.third-party/3.9.1 2022-04-03 18:09:04,138 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - uk.ac.ebi.enfin.mi.cluster/1.6.0 2022-04-03 18:09:04,142 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-04-03 18:09:04,162 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.bundles.xmlbeans/2.4.0.5 2022-04-03 18:09:04,168 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.commons.io/2.1.0 2022-04-03 18:09:04,176 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-04-03 18:09:04,194 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - javax.ws.rs-api/2.1.0 2022-04-03 18:09:04,201 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.cmdline/3.9.1 2022-04-03 18:09:04,208 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.api-bundle/3.9.1 2022-04-03 18:09:04,218 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.event-impl/3.9.1 2022-04-03 18:09:04,230 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.property.internal/3.9.1 2022-04-03 18:09:04,282 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.cmdline-impl/3.9.1 2022-04-03 18:09:04,291 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.util-impl/3.9.1 2022-04-03 18:09:04,307 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.io.datasource-impl/3.9.1 2022-04-03 18:09:04,324 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.equations-impl/3.9.1 2022-04-03 18:09:04,364 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.application-impl/3.9.1 2022-04-03 18:09:04,376 [features-3-thread-1] INFO org.cytoscape.application.userlog - Setting file directory = /home/psgendb/CytoscapeConfiguration 2022-04-03 18:09:04,377 [features-3-thread-1] INFO org.cytoscape.application.userlog - Write tracker.active.session into /home/psgendb/CytoscapeConfiguration 2022-04-03 18:09:04,390 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.swing-util-impl/3.9.1 2022-04-03 18:09:04,448 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.presentation-impl/3.9.1 2022-04-03 18:09:04,460 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.work-swing-impl/3.9.1 2022-04-03 18:09:04,507 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.work-impl/3.9.1 2022-04-03 18:09:04,527 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.model-impl/3.9.1 2022-04-03 18:09:04,929 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.viewmodel-impl/3.9.1 2022-04-03 18:09:04,997 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.view.vizmap-impl/3.9.1 2022-04-03 18:09:05,067 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-impl/3.9.1 2022-04-03 18:09:05,080 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.group-impl/3.9.1 2022-04-03 18:09:05,238 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.vizmap-gui-core-impl/3.9.1 2022-04-03 18:09:05,359 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.session-impl/3.9.1 2022-04-03 18:09:05,407 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.custom-graphics-internal/3.9.1 2022-04-03 18:09:05,600 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.ding-presentation-impl/3.9.1 2022-04-03 18:09:05,745 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-presentation-impl/3.9.1 2022-04-03 18:09:05,814 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.io-impl/3.9.1 2022-04-03 18:09:05,898 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.core-task-impl/3.9.1 2022-04-03 18:09:06,052 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.command-executor-impl/3.9.1 2022-04-03 18:09:06,111 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.swing-application-impl/3.9.1 2022-04-03 18:09:07,320 [features-3-thread-1] WARN org.cytoscape.application.userlog - The virtual key 'VK_?' does not exist. 2022-04-03 18:09:07,570 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.jobs-impl/3.9.1 2022-04-03 18:09:07,636 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.editor-impl/3.9.1 2022-04-03 18:09:07,673 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.graphml-impl/3.9.1 2022-04-03 18:09:07,684 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.vizmap-gui-impl/3.9.1 2022-04-03 18:09:08,092 [features-3-thread-1] INFO org.cytoscape.application.userlog - CyNetwork w/ private tables created: ID = 2 2022-04-03 18:09:08,093 [features-3-thread-1] INFO org.cytoscape.application.userlog - CyNetwork w/ private tables created: Base Graph ID = 43 2022-04-03 18:09:08,389 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.filter2-impl/3.9.1 2022-04-03 18:09:08,622 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-import-impl/3.9.1 2022-04-03 18:09:09,111 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.linkout-impl/3.9.1 2022-04-03 18:09:09,139 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-prefuse-impl/3.9.1 2022-04-03 18:09:09,153 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-cytoscape-impl/3.9.1 2022-04-03 18:09:09,183 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.manual-layout-impl/3.9.1 2022-04-03 18:09:09,345 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - edge-bundler/3.9.1 2022-04-03 18:09:09,435 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-browser-impl/3.9.1 2022-04-03 18:09:09,637 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.webservice-impl/3.9.1 2022-04-03 18:09:09,721 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.search-impl/3.9.1 2022-04-03 18:09:09,771 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.app-impl/3.9.1 2022-04-03 18:09:09,873 [pool-10-thread-1] INFO org.cytoscape.application.userlog - Server socket started on 127.0.0.1:2607 2022-04-03 18:09:09,887 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.scripting-impl/3.9.1 2022-04-03 18:09:09,912 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.cytoscape.scripting-impl/3.9.1 is waiting for namespace handlers [http://karaf.apache.org/xmlns/shell/v1.0.1, http://www.osgi.org/xmlns/blueprint/v1.0.1] 2022-04-03 18:09:09,913 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.gui-cmdline-parser-impl/3.9.1 2022-04-03 18:09:09,931 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.equations-functions-impl/3.9.1 2022-04-03 18:09:09,949 [features-3-thread-1] INFO org.apache.karaf.deployer.features.osgi.Activator - Deployment finished. Registering FeatureDeploymentListener 2022-04-03 18:09:11,553 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Done. 2022-04-03 18:09:11,674 [pool-9-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-04-03 18:09:11,675 [pool-9-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-04-03 18:09:11,677 [pool-9-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-04-03 18:09:12,059 [pool-9-thread-1] INFO org.cytoscape.application.userlog - New network import client registered: Universal Interaction Database Client 2022-04-03 18:09:12,618 [pool-9-thread-1] INFO org.cytoscape.io.webservice.biomart.rest.BiomartRestClient - Biomart Service URL is: http://www.ensembl.org/biomart/martservice 2022-04-03 18:09:12,666 [pool-9-thread-1] INFO org.cytoscape.application.userlog - New network import client registered: BioMart Client 2022-04-03 18:09:12,682 [Thread-16] ERROR org.cytoscape.opencl.layout.CyActivator - No OpenCL compatible device found. Cannot register 'Prefuse Force Directed OpenCL Layout'. 2022-04-03 18:09:12,918 [Task-Thread-1-Factory-0x72a8220a] INFO org.cytoscape.io.internal.read.GenericReaderManager - Filter returns Accepted. Need to check priority: org.cytoscape.io.internal.read.vizmap.VizmapXMLReaderFactory@1d3455e3 2022-04-03 18:09:12,919 [Task-Thread-1-Factory-0x72a8220a] INFO org.cytoscape.io.internal.read.GenericReaderManager - Successfully found compatible ReaderFactory org.cytoscape.io.internal.read.vizmap.VizmapXMLReaderFactory@1d3455e3 2022-04-03 18:09:12,930 [Task-Thread-3-Factory-0x72a8220a] INFO org.cytoscape.application.userlog - Custom Graphics Image property file loaded from: /home/psgendb/CytoscapeConfiguration/images3 2022-04-03 18:09:12,934 [Task-Thread-3-Factory-0x72a8220a] INFO org.cytoscape.application.userlog - Image loading process finished in 0.008 sec. 2022-04-03 18:09:12,935 [Task-Thread-3-Factory-0x72a8220a] INFO org.cytoscape.application.userlog - Currently, -1 images are available. 2022-04-03 18:09:13,560 [Task-Thread-3-Factory-0x72a8220a] INFO org.cytoscape.application.userlog - Image saving process finished in 0.636 sec. 2022-04-03 18:09:14,708 [pool-9-thread-1] INFO org.cytoscape.diffusion.internal.rest.RemoteLogger - No property set for cytoscape.remotelogging.senderaddressservicehostname; setting logger sender address service hostname to: http://35.197.44.209 2022-04-03 18:09:15,850 [pool-84-thread-1] INFO org.cytoscape.rest.internal.CyActivator - Initializing cyREST API server... 2022-04-03 18:09:17,729 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Examining bundle for SPI provider: org.eclipse.jetty.http 2022-04-03 18:09:17,733 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Found SPI resource: bundle://138.0:0/META-INF/services/org.eclipse.jetty.http.HttpFieldPreEncoder 2022-04-03 18:09:17,769 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Loaded SPI provider: class org.eclipse.jetty.http.Http1FieldPreEncoder 2022-04-03 18:09:17,771 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Registered service: org.apache.felix.framework.ServiceRegistrationImpl@4ec8f6ed 2022-04-03 18:09:17,771 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Registered provider: org.eclipse.jetty.http.HttpFieldPreEncoder in bundle org.eclipse.jetty.http 2022-04-03 18:09:18,800 [pool-84-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Command registration delayed for bundle org.apache.karaf.http.core/4.2.8. Missing service: [org.apache.karaf.http.core.ProxyService, org.apache.karaf.http.core.ServletService] 2022-04-03 18:09:19,165 [activator-1-thread-2] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 18:09:19,172 [activator-1-thread-2] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 18:09:19,191 [activator-1-thread-3] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 18:09:19,429 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - Start Saving images to: /home/psgendb/CytoscapeConfiguration/images3 2022-04-03 18:09:19,432 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - ========== Image saving process finished ============= 2022-04-03 18:09:19,445 [Task-Thread-3-Factory-0x72a8220a] INFO org.cytoscape.application.userlog - Image saving process finished in 0.01 sec. 2022-04-03 18:09:19,552 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - #CiaoBello 2022-04-03 18:09:19,583 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.karaf.shell.core/4.2.8 2022-04-03 18:09:19,582 [pool-84-thread-1] ERROR org.cytoscape.rest.internal.CyActivator - Failed to initialize cyREST server. org.osgi.framework.BundleException: The framework has been shutdown. at org.apache.felix.framework.Felix.installBundle(Felix.java:2995) ~[?:?] at org.apache.felix.framework.BundleContextImpl.installBundle(BundleContextImpl.java:167) ~[?:?] at org.cytoscape.rest.internal.task.OSGiJAXRSManager.installBundleFromResource(OSGiJAXRSManager.java:266) ~[!/:?] at org.cytoscape.rest.internal.task.OSGiJAXRSManager.installBundlesFromResources(OSGiJAXRSManager.java:238) ~[!/:?] at org.cytoscape.rest.internal.task.OSGiJAXRSManager.installOSGiJAXRSBundles(OSGiJAXRSManager.java:127) ~[!/:?] at org.cytoscape.rest.internal.CyActivator.lambda$startCyREST$0(CyActivator.java:325) [!/:?] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515) [?:?] at java.util.concurrent.FutureTask.run(FutureTask.java:264) [?:?] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) [?:?] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) [?:?] at java.lang.Thread.run(Thread.java:829) [?:?] 2022-04-03 18:09:19,599 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.cytoscape.scripting-impl/3.9.1 2022-04-03 18:09:19,605 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 18:09:19,615 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.aries.blueprint.cm/1.3.1 2022-04-03 18:09:19,625 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.aries.blueprint.core/1.10.2 2022-04-03 18:09:19,679 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 18:09:19,748 [FelixStartLevel] INFO org.apache.aries.spifly.BaseActivator - Unregistered: org.apache.felix.framework.ServiceRegistrationImpl@4ec8f6ed 2022-04-03 18:09:19,818 [FelixStartLevel] INFO org.cytoscape.cyndex2.internal.CyActivator - Shutting down CyNDEx-2... 2022-04-03 18:09:19,893 [FelixStartLevel] INFO org.cytoscape.rest.internal.CyActivator - Shutting down REST server... 2022-04-03 18:09:20,506 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.system.core/4.2.8 2022-04-03 18:09:20,521 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.features.command/4.2.8 2022-04-03 18:09:20,523 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.instance.core/4.2.8 2022-04-03 18:09:20,524 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.shell.commands/4.2.8 2022-04-03 18:09:20,525 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.service.core/4.2.8 2022-04-03 18:09:20,526 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.log.core/4.2.8 2022-04-03 18:09:20,528 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 18:09:20,529 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.bundle.core/4.2.8 2022-04-03 18:09:20,530 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:11:53,043 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from jmx.acl.cfg 2022-04-03 18:11:53,078 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.config.cfg 2022-04-03 18:11:53,106 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.jaas.cfg 2022-04-03 18:11:53,133 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.shell.cfg 2022-04-03 18:11:53,163 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.ops4j.pax.url.mvn.cfg 2022-04-03 18:11:53,199 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.jaas.cfg 2022-04-03 18:11:53,235 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.feature.cfg 2022-04-03 18:11:53,268 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.bundle.cfg 2022-04-03 18:11:54,639 [activator-1-thread-2] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Adding features: cytoscape-karaf/[3.9.1,3.9.1],cytoscape-gui/[3.9.1,3.9.1] 2022-04-03 18:11:55,409 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Changes to perform: 2022-04-03 18:11:55,410 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Region: root 2022-04-03 18:11:55,410 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Bundles to install: 2022-04-03 18:11:55,410 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.activation/com.springsource.javax.activation/1.1.1 2022-04-03 18:11:55,410 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.xml.stream/com.springsource.javax.xml.stream/1.0.1 2022-04-03 18:11:55,410 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/edge-bundler-impl/3.9.1 2022-04-03 18:11:55,411 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.ws.rs/javax.ws.rs-api/2.1 2022-04-03 18:11:55,411 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.api/1.0.1 2022-04-03 18:11:55,411 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.cm/1.3.1 2022-04-03 18:11:55,411 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core/1.10.2 2022-04-03 18:11:55,411 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core.compatibility/1.0.0 2022-04-03 18:11:55,412 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.proxy/org.apache.aries.proxy/1.1.6 2022-04-03 18:11:55,412 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:commons-io/commons-io/2.1 2022-04-03 18:11:55,412 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.blueprintstate/4.2.8 2022-04-03 18:11:55,412 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.core/4.2.8 2022-04-03 18:11:55,412 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.blueprint/4.2.8 2022-04-03 18:11:55,413 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.features/4.2.8 2022-04-03 18:11:55,413 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.boot/4.2.8 2022-04-03 18:11:55,413 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 18:11:55,413 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.features/org.apache.karaf.features.command/4.2.8 2022-04-03 18:11:55,413 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.instance/org.apache.karaf.instance.core/4.2.8 2022-04-03 18:11:55,413 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas.blueprint/org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 18:11:55,414 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:11:55,414 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.config/4.2.8 2022-04-03 18:11:55,414 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.modules/4.2.8 2022-04-03 18:11:55,414 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.log/org.apache.karaf.log.core/4.2.8 2022-04-03 18:11:55,414 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.service/org.apache.karaf.service.core/4.2.8 2022-04-03 18:11:55,415 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.commands/4.2.8 2022-04-03 18:11:55,415 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.console/4.2.8 2022-04-03 18:11:55,415 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.core/4.2.8 2022-04-03 18:11:55,415 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.table/4.2.8 2022-04-03 18:11:55,415 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.system/org.apache.karaf.system.core/4.2.8 2022-04-03 18:11:55,415 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.jaxb-impl/2.1.6_1 2022-04-03 18:11:55,416 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.xmlbeans/2.4.0_5 2022-04-03 18:11:55,416 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-04-03 18:11:55,416 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-04-03 18:11:55,416 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-04-03 18:11:55,416 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-04-03 18:11:55,417 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/api-bundle/3.9.1 2022-04-03 18:11:55,417 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/app-impl/3.9.1 2022-04-03 18:11:55,417 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/application-impl/3.9.1 2022-04-03 18:11:55,417 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/application-metadata-impl/3.9.1 2022-04-03 18:11:55,417 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/cmdline/3.9.1 2022-04-03 18:11:55,418 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/cmdline-impl/3.9.1 2022-04-03 18:11:55,418 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/command-executor-impl/3.9.1 2022-04-03 18:11:55,418 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/core-task-impl/3.9.1 2022-04-03 18:11:55,418 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/custom-graphics-internal/3.9.1 2022-04-03 18:11:55,418 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/diagnostics-impl/3.9.1 2022-04-03 18:11:55,418 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/ding-presentation-impl/3.9.1 2022-04-03 18:11:55,418 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/editor-impl/3.9.1 2022-04-03 18:11:55,419 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-functions-impl/3.9.1 2022-04-03 18:11:55,419 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-impl/3.9.1 2022-04-03 18:11:55,419 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/event-impl/3.9.1 2022-04-03 18:11:55,419 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/filter2-impl/3.9.1 2022-04-03 18:11:55,419 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/graphml-impl/3.9.1 2022-04-03 18:11:55,419 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/group-impl/3.9.1 2022-04-03 18:11:55,420 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/gui-cmdline-parser-impl/3.9.1 2022-04-03 18:11:55,420 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/io-impl/3.9.1 2022-04-03 18:11:55,420 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/datasource-impl/3.9.1 2022-04-03 18:11:55,420 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/jobs-impl/3.9.1 2022-04-03 18:11:55,420 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-cytoscape-impl/3.9.1 2022-04-03 18:11:55,420 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-impl/3.9.1 2022-04-03 18:11:55,421 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-prefuse-impl/3.9.1 2022-04-03 18:11:55,421 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/linkout-impl/3.9.1 2022-04-03 18:11:55,421 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/manual-layout-impl/3.9.1 2022-04-03 18:11:55,421 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/model-impl/3.9.1 2022-04-03 18:11:55,421 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/presentation-impl/3.9.1 2022-04-03 18:11:55,422 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/property-impl/3.9.1 2022-04-03 18:11:55,422 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/scripting-impl/3.9.1 2022-04-03 18:11:55,422 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/search-impl/3.9.1 2022-04-03 18:11:55,422 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/session-impl/3.9.1 2022-04-03 18:11:55,422 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/splash-updater-impl/3.9.1 2022-04-03 18:11:55,422 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-application-impl/3.9.1 2022-04-03 18:11:55,423 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-util-impl/3.9.1 2022-04-03 18:11:55,423 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-browser-impl/3.9.1 2022-04-03 18:11:55,423 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-import-impl/3.9.1 2022-04-03 18:11:55,424 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-presentation-impl/3.9.1 2022-04-03 18:11:55,424 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/third-party/3.9.1 2022-04-03 18:11:55,425 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/util-impl/3.9.1 2022-04-03 18:11:55,425 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-impl/3.9.1 2022-04-03 18:11:55,425 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/viewmodel-impl/3.9.1 2022-04-03 18:11:55,425 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-core-impl/3.9.1 2022-04-03 18:11:55,425 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-impl/3.9.1 2022-04-03 18:11:55,426 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/webservice-impl/3.9.1 2022-04-03 18:11:55,426 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-impl/3.9.1 2022-04-03 18:11:55,426 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-swing-impl/3.9.1 2022-04-03 18:11:55,426 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-builtins/3.13.2 2022-04-03 18:11:55,426 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-reader/3.13.2 2022-04-03 18:11:55,426 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal/3.13.2 2022-04-03 18:11:55,427 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal-jansi/3.13.2 2022-04-03 18:11:55,427 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm/7.2 2022-04-03 18:11:55,427 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-commons/7.2 2022-04-03 18:11:55,427 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-tree/7.2 2022-04-03 18:11:55,427 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-analysis/7.2 2022-04-03 18:11:55,428 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-util/7.2 2022-04-03 18:11:55,428 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:cytoscape-temp/uk.ac.ebi.enfin.mi.cluster.micluster/1.6 2022-04-03 18:11:55,431 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Installing bundles: 2022-04-03 18:11:55,431 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.activation/com.springsource.javax.activation/1.1.1 2022-04-03 18:11:55,479 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.xml.stream/com.springsource.javax.xml.stream/1.0.1 2022-04-03 18:11:55,504 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/edge-bundler-impl/3.9.1 2022-04-03 18:11:55,528 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.ws.rs/javax.ws.rs-api/2.1 2022-04-03 18:11:55,559 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.api/1.0.1 2022-04-03 18:11:55,582 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.cm/1.3.1 2022-04-03 18:11:55,624 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core/1.10.2 2022-04-03 18:11:55,667 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core.compatibility/1.0.0 2022-04-03 18:11:55,689 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.proxy/org.apache.aries.proxy/1.1.6 2022-04-03 18:11:55,726 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:commons-io/commons-io/2.1 2022-04-03 18:11:55,770 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.blueprintstate/4.2.8 2022-04-03 18:11:55,799 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.core/4.2.8 2022-04-03 18:11:55,833 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.blueprint/4.2.8 2022-04-03 18:11:55,866 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.features/4.2.8 2022-04-03 18:11:55,896 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.boot/4.2.8 2022-04-03 18:11:55,925 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 18:11:55,955 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.features/org.apache.karaf.features.command/4.2.8 2022-04-03 18:11:55,989 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.instance/org.apache.karaf.instance.core/4.2.8 2022-04-03 18:11:56,039 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas.blueprint/org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 18:11:56,065 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:11:56,104 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.config/4.2.8 2022-04-03 18:11:56,131 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.modules/4.2.8 2022-04-03 18:11:56,182 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.log/org.apache.karaf.log.core/4.2.8 2022-04-03 18:11:56,215 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.service/org.apache.karaf.service.core/4.2.8 2022-04-03 18:11:56,245 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.commands/4.2.8 2022-04-03 18:11:56,281 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.console/4.2.8 2022-04-03 18:11:56,317 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.core/4.2.8 2022-04-03 18:11:56,440 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.table/4.2.8 2022-04-03 18:11:56,783 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.system/org.apache.karaf.system.core/4.2.8 2022-04-03 18:11:56,829 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.jaxb-impl/2.1.6_1 2022-04-03 18:11:56,875 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.xmlbeans/2.4.0_5 2022-04-03 18:11:56,951 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-04-03 18:11:56,987 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-04-03 18:11:57,036 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-04-03 18:11:57,066 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-04-03 18:11:57,096 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/api-bundle/3.9.1 2022-04-03 18:11:57,148 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/app-impl/3.9.1 2022-04-03 18:11:57,185 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/application-impl/3.9.1 2022-04-03 18:11:57,213 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/application-metadata-impl/3.9.1 2022-04-03 18:11:57,237 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/cmdline/3.9.1 2022-04-03 18:11:57,264 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/cmdline-impl/3.9.1 2022-04-03 18:11:57,287 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/command-executor-impl/3.9.1 2022-04-03 18:11:57,317 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/core-task-impl/3.9.1 2022-04-03 18:11:57,380 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/custom-graphics-internal/3.9.1 2022-04-03 18:11:57,418 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/diagnostics-impl/3.9.1 2022-04-03 18:11:57,447 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/ding-presentation-impl/3.9.1 2022-04-03 18:11:57,500 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/editor-impl/3.9.1 2022-04-03 18:11:57,528 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-functions-impl/3.9.1 2022-04-03 18:11:57,555 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-impl/3.9.1 2022-04-03 18:11:57,584 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/event-impl/3.9.1 2022-04-03 18:11:57,618 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/filter2-impl/3.9.1 2022-04-03 18:11:57,721 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/graphml-impl/3.9.1 2022-04-03 18:11:57,756 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/group-impl/3.9.1 2022-04-03 18:11:57,785 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/gui-cmdline-parser-impl/3.9.1 2022-04-03 18:11:57,817 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/io-impl/3.9.1 2022-04-03 18:11:57,976 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/datasource-impl/3.9.1 2022-04-03 18:11:58,154 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/jobs-impl/3.9.1 2022-04-03 18:11:58,185 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-cytoscape-impl/3.9.1 2022-04-03 18:11:58,268 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-impl/3.9.1 2022-04-03 18:11:58,489 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-prefuse-impl/3.9.1 2022-04-03 18:11:58,520 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/linkout-impl/3.9.1 2022-04-03 18:11:58,547 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/manual-layout-impl/3.9.1 2022-04-03 18:11:58,576 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/model-impl/3.9.1 2022-04-03 18:11:58,899 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/presentation-impl/3.9.1 2022-04-03 18:11:58,928 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/property-impl/3.9.1 2022-04-03 18:11:58,957 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/scripting-impl/3.9.1 2022-04-03 18:11:58,988 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/search-impl/3.9.1 2022-04-03 18:11:59,018 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/session-impl/3.9.1 2022-04-03 18:11:59,047 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/splash-updater-impl/3.9.1 2022-04-03 18:11:59,074 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-application-impl/3.9.1 2022-04-03 18:11:59,248 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-util-impl/3.9.1 2022-04-03 18:11:59,561 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-browser-impl/3.9.1 2022-04-03 18:11:59,595 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-import-impl/3.9.1 2022-04-03 18:11:59,835 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-presentation-impl/3.9.1 2022-04-03 18:11:59,882 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/third-party/3.9.1 2022-04-03 18:12:00,200 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/util-impl/3.9.1 2022-04-03 18:12:00,256 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-impl/3.9.1 2022-04-03 18:12:00,289 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/viewmodel-impl/3.9.1 2022-04-03 18:12:00,331 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-core-impl/3.9.1 2022-04-03 18:12:00,352 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-impl/3.9.1 2022-04-03 18:12:00,401 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/webservice-impl/3.9.1 2022-04-03 18:12:00,423 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-impl/3.9.1 2022-04-03 18:12:00,449 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-swing-impl/3.9.1 2022-04-03 18:12:00,480 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-builtins/3.13.2 2022-04-03 18:12:00,512 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-reader/3.13.2 2022-04-03 18:12:00,542 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal/3.13.2 2022-04-03 18:12:00,580 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal-jansi/3.13.2 2022-04-03 18:12:00,603 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm/7.2 2022-04-03 18:12:00,660 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-commons/7.2 2022-04-03 18:12:00,690 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-tree/7.2 2022-04-03 18:12:00,715 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-analysis/7.2 2022-04-03 18:12:00,752 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-util/7.2 2022-04-03 18:12:00,778 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:cytoscape-temp/uk.ac.ebi.enfin.mi.cluster.micluster/1.6 2022-04-03 18:12:03,240 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Starting bundles: 2022-04-03 18:12:03,243 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.splash-updater-impl/3.9.1 2022-04-03 18:12:03,253 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.diagnostics-impl/3.9.1 2022-04-03 18:12:03,268 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm/7.2.0 2022-04-03 18:12:03,272 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.tree/7.2.0 2022-04-03 18:12:03,276 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.commons/7.2.0 2022-04-03 18:12:03,281 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.api/1.0.1 2022-04-03 18:12:03,288 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.proxy/1.1.6 2022-04-03 18:12:03,302 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.core/1.10.2 2022-04-03 18:12:03,365 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintExtender - No quiesce support is available, so blueprint components will not participate in quiesce operations 2022-04-03 18:12:03,578 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.aries.blueprint.core/1.10.2 has been started 2022-04-03 18:12:03,579 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.cm/1.3.1 2022-04-03 18:12:03,606 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.aries.blueprint.cm/1.3.1 has been started 2022-04-03 18:12:03,607 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.tree.analysis/7.2.0 2022-04-03 18:12:03,617 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.util/7.2.0 2022-04-03 18:12:03,623 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.deployer.blueprint/4.2.8 2022-04-03 18:12:03,638 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.deployer.features/4.2.8 2022-04-03 18:12:03,661 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.terminal/3.13.2 2022-04-03 18:12:03,671 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.reader/3.13.2 2022-04-03 18:12:03,677 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.builtins/3.13.2 2022-04-03 18:12:03,681 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.core/4.2.8 2022-04-03 18:12:04,205 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.karaf.shell.core/4.2.8 has been started 2022-04-03 18:12:04,206 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.system.core/4.2.8 2022-04-03 18:12:04,246 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.system.core/4.2.8 2022-04-03 18:12:04,248 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.commands/4.2.8 2022-04-03 18:12:04,319 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.shell.commands/4.2.8 2022-04-03 18:12:04,321 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.config/4.2.8 2022-04-03 18:12:04,338 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.modules/4.2.8 2022-04-03 18:12:04,359 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.features.command/4.2.8 2022-04-03 18:12:04,387 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.features.command/4.2.8 2022-04-03 18:12:04,389 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.instance.core/4.2.8 2022-04-03 18:12:04,431 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.instance.core/4.2.8 2022-04-03 18:12:04,448 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.log.core/4.2.8 2022-04-03 18:12:04,480 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.log.core/4.2.8 2022-04-03 18:12:04,482 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.service.core/4.2.8 2022-04-03 18:12:04,482 [activator-1-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.log.core/4.2.8 2022-04-03 18:12:04,486 [activator-1-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.log.core/4.2.8 2022-04-03 18:12:04,503 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.service.core/4.2.8 2022-04-03 18:12:04,504 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.table/4.2.8 2022-04-03 18:12:04,511 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 18:12:04,535 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.karaf.jaas.blueprint.config/4.2.8 has been started 2022-04-03 18:12:04,535 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.bundle.core/4.2.8 2022-04-03 18:12:04,582 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.bundle.core/4.2.8 2022-04-03 18:12:04,583 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.bundle.blueprintstate/4.2.8 2022-04-03 18:12:04,606 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 18:12:04,622 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 18:12:04,622 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:12:04,643 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:12:04,645 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Updating commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:12:04,648 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Updating commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:12:04,665 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - com.springsource.javax.activation/1.1.1 2022-04-03 18:12:04,672 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - com.springsource.javax.xml.stream/1.0.1 2022-04-03 18:12:04,677 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-04-03 18:12:04,706 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-04-03 18:12:04,727 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.commons.io/2.1.0 2022-04-03 18:12:04,734 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.bundles.jaxb-impl/2.1.6.1 2022-04-03 18:12:04,742 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - uk.ac.ebi.enfin.mi.cluster/1.6.0 2022-04-03 18:12:04,748 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.third-party/3.9.1 2022-04-03 18:12:04,757 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-04-03 18:12:04,777 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-04-03 18:12:04,799 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.bundles.xmlbeans/2.4.0.5 2022-04-03 18:12:04,804 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - javax.ws.rs-api/2.1.0 2022-04-03 18:12:04,811 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.api-bundle/3.9.1 2022-04-03 18:12:04,820 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.cmdline/3.9.1 2022-04-03 18:12:04,826 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.event-impl/3.9.1 2022-04-03 18:12:04,835 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.cmdline-impl/3.9.1 2022-04-03 18:12:04,842 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.property.internal/3.9.1 2022-04-03 18:12:04,891 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.util-impl/3.9.1 2022-04-03 18:12:04,910 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.io.datasource-impl/3.9.1 2022-04-03 18:12:04,934 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.equations-impl/3.9.1 2022-04-03 18:12:04,975 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.application-impl/3.9.1 2022-04-03 18:12:04,990 [features-3-thread-1] INFO org.cytoscape.application.userlog - Setting file directory = /home/psgendb/CytoscapeConfiguration 2022-04-03 18:12:04,996 [features-3-thread-1] INFO org.cytoscape.application.userlog - Write tracker.active.session into /home/psgendb/CytoscapeConfiguration 2022-04-03 18:12:05,011 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.swing-util-impl/3.9.1 2022-04-03 18:12:05,067 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.model-impl/3.9.1 2022-04-03 18:12:05,452 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.work-impl/3.9.1 2022-04-03 18:12:05,478 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.presentation-impl/3.9.1 2022-04-03 18:12:05,493 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.work-swing-impl/3.9.1 2022-04-03 18:12:05,532 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.viewmodel-impl/3.9.1 2022-04-03 18:12:05,583 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.view.vizmap-impl/3.9.1 2022-04-03 18:12:05,651 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-impl/3.9.1 2022-04-03 18:12:05,667 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.group-impl/3.9.1 2022-04-03 18:12:05,817 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.vizmap-gui-core-impl/3.9.1 2022-04-03 18:12:05,825 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.session-impl/3.9.1 2022-04-03 18:12:05,849 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.custom-graphics-internal/3.9.1 2022-04-03 18:12:06,016 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-presentation-impl/3.9.1 2022-04-03 18:12:06,093 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.ding-presentation-impl/3.9.1 2022-04-03 18:12:06,230 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.io-impl/3.9.1 2022-04-03 18:12:06,311 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.core-task-impl/3.9.1 2022-04-03 18:12:06,475 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.command-executor-impl/3.9.1 2022-04-03 18:12:06,532 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.swing-application-impl/3.9.1 2022-04-03 18:12:07,745 [features-3-thread-1] WARN org.cytoscape.application.userlog - The virtual key 'VK_?' does not exist. 2022-04-03 18:12:07,995 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.jobs-impl/3.9.1 2022-04-03 18:12:08,060 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - edge-bundler/3.9.1 2022-04-03 18:12:08,075 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.filter2-impl/3.9.1 2022-04-03 18:12:08,377 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-import-impl/3.9.1 2022-04-03 18:12:09,073 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-prefuse-impl/3.9.1 2022-04-03 18:12:09,089 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.vizmap-gui-impl/3.9.1 2022-04-03 18:12:09,447 [features-3-thread-1] INFO org.cytoscape.application.userlog - CyNetwork w/ private tables created: ID = 2 2022-04-03 18:12:09,449 [features-3-thread-1] INFO org.cytoscape.application.userlog - CyNetwork w/ private tables created: Base Graph ID = 43 2022-04-03 18:12:09,716 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.graphml-impl/3.9.1 2022-04-03 18:12:09,726 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.search-impl/3.9.1 2022-04-03 18:12:09,747 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.webservice-impl/3.9.1 2022-04-03 18:12:09,829 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-browser-impl/3.9.1 2022-04-03 18:12:10,030 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.manual-layout-impl/3.9.1 2022-04-03 18:12:10,291 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.linkout-impl/3.9.1 2022-04-03 18:12:10,319 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-cytoscape-impl/3.9.1 2022-04-03 18:12:10,354 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.editor-impl/3.9.1 2022-04-03 18:12:10,380 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.app-impl/3.9.1 2022-04-03 18:12:10,488 [pool-10-thread-1] INFO org.cytoscape.application.userlog - Server socket started on 127.0.0.1:2607 2022-04-03 18:12:10,502 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.scripting-impl/3.9.1 2022-04-03 18:12:10,528 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.cytoscape.scripting-impl/3.9.1 is waiting for namespace handlers [http://karaf.apache.org/xmlns/shell/v1.0.1, http://www.osgi.org/xmlns/blueprint/v1.0.1] 2022-04-03 18:12:10,530 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.gui-cmdline-parser-impl/3.9.1 2022-04-03 18:12:10,551 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.equations-functions-impl/3.9.1 2022-04-03 18:12:10,573 [features-3-thread-1] INFO org.apache.karaf.deployer.features.osgi.Activator - Deployment finished. Registering FeatureDeploymentListener 2022-04-03 18:12:11,452 [pool-9-thread-1] INFO org.cytoscape.io.webservice.biomart.rest.BiomartRestClient - Biomart Service URL is: http://www.ensembl.org/biomart/martservice 2022-04-03 18:12:11,505 [pool-9-thread-1] INFO org.cytoscape.application.userlog - New network import client registered: BioMart Client 2022-04-03 18:12:12,016 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Done. 2022-04-03 18:12:12,528 [Thread-16] ERROR org.cytoscape.opencl.layout.CyActivator - No OpenCL compatible device found. Cannot register 'Prefuse Force Directed OpenCL Layout'. 2022-04-03 18:12:12,902 [pool-9-thread-1] INFO org.cytoscape.application.userlog - New network import client registered: Universal Interaction Database Client 2022-04-03 18:12:13,235 [pool-9-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-04-03 18:12:13,237 [pool-9-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-04-03 18:12:13,238 [pool-9-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-04-03 18:12:13,498 [Task-Thread-1-Factory-0x678edf0a] INFO org.cytoscape.io.internal.read.GenericReaderManager - Filter returns Accepted. Need to check priority: org.cytoscape.io.internal.read.vizmap.VizmapXMLReaderFactory@31a748b2 2022-04-03 18:12:13,499 [Task-Thread-1-Factory-0x678edf0a] INFO org.cytoscape.io.internal.read.GenericReaderManager - Successfully found compatible ReaderFactory org.cytoscape.io.internal.read.vizmap.VizmapXMLReaderFactory@31a748b2 2022-04-03 18:12:13,509 [Task-Thread-3-Factory-0x678edf0a] INFO org.cytoscape.application.userlog - Custom Graphics Image property file loaded from: /home/psgendb/CytoscapeConfiguration/images3 2022-04-03 18:12:13,513 [Task-Thread-3-Factory-0x678edf0a] INFO org.cytoscape.application.userlog - Image loading process finished in 0.007 sec. 2022-04-03 18:12:13,514 [Task-Thread-3-Factory-0x678edf0a] INFO org.cytoscape.application.userlog - Currently, -1 images are available. 2022-04-03 18:12:14,165 [Task-Thread-3-Factory-0x678edf0a] INFO org.cytoscape.application.userlog - Image saving process finished in 0.66 sec. 2022-04-03 18:12:15,537 [pool-9-thread-1] INFO org.cytoscape.diffusion.internal.rest.RemoteLogger - No property set for cytoscape.remotelogging.senderaddressservicehostname; setting logger sender address service hostname to: http://35.197.44.209 2022-04-03 18:12:16,203 [pool-84-thread-1] INFO org.cytoscape.rest.internal.CyActivator - Initializing cyREST API server... 2022-04-03 18:12:18,336 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Examining bundle for SPI provider: org.eclipse.jetty.http 2022-04-03 18:12:18,339 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Found SPI resource: bundle://138.0:0/META-INF/services/org.eclipse.jetty.http.HttpFieldPreEncoder 2022-04-03 18:12:18,374 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Loaded SPI provider: class org.eclipse.jetty.http.Http1FieldPreEncoder 2022-04-03 18:12:18,376 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Registered service: org.apache.felix.framework.ServiceRegistrationImpl@7c9c5411 2022-04-03 18:12:18,376 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Registered provider: org.eclipse.jetty.http.HttpFieldPreEncoder in bundle org.eclipse.jetty.http 2022-04-03 18:12:19,656 [pool-84-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Command registration delayed for bundle org.apache.karaf.http.core/4.2.8. Missing service: [org.apache.karaf.http.core.ServletService, org.apache.karaf.http.core.ProxyService] 2022-04-03 18:12:20,013 [activator-1-thread-2] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 18:12:20,020 [activator-1-thread-2] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 18:12:20,043 [activator-1-thread-3] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 18:12:22,344 [pool-84-thread-1] INFO org.cytoscape.rest.internal.task.ResourceManager - ========== Cytoscape RESTful API registered core resources in (952) milliseconds. 2022-04-03 18:12:22,345 [pool-84-thread-1] INFO org.cytoscape.rest.internal.CyActivator - cyREST API Server initialized in 6140msec 2022-04-03 18:14:45,189 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - Start Saving images to: /home/psgendb/CytoscapeConfiguration/images3 2022-04-03 18:14:45,195 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - ========== Image saving process finished ============= 2022-04-03 18:14:45,222 [Task-Thread-5-Factory-0x678edf0a] INFO org.cytoscape.application.userlog - Image saving process finished in 0.014 sec. 2022-04-03 18:14:45,317 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - #CiaoBello 2022-04-03 18:14:45,342 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.karaf.shell.core/4.2.8 2022-04-03 18:14:45,357 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.cytoscape.scripting-impl/3.9.1 2022-04-03 18:14:45,363 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 18:14:45,372 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.aries.blueprint.cm/1.3.1 2022-04-03 18:14:45,384 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.aries.blueprint.core/1.10.2 2022-04-03 18:14:45,506 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 18:14:45,619 [FelixStartLevel] INFO org.apache.aries.spifly.BaseActivator - Unregistered: org.apache.felix.framework.ServiceRegistrationImpl@7c9c5411 2022-04-03 18:14:45,691 [FelixStartLevel] INFO org.cytoscape.cyndex2.internal.CyActivator - Shutting down CyNDEx-2... 2022-04-03 18:14:45,715 [FelixStartLevel] INFO org.cytoscape.rest.internal.CyActivator - Shutting down REST server... 2022-04-03 18:14:46,898 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.system.core/4.2.8 2022-04-03 18:14:46,909 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.shell.commands/4.2.8 2022-04-03 18:14:46,910 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.bundle.core/4.2.8 2022-04-03 18:14:46,911 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 18:14:46,912 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.instance.core/4.2.8 2022-04-03 18:14:46,913 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.features.command/4.2.8 2022-04-03 18:14:46,914 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.log.core/4.2.8 2022-04-03 18:14:46,915 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:14:46,916 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.service.core/4.2.8 2022-04-03 18:24:33,964 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.shell.cfg 2022-04-03 18:24:34,018 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.felix.eventadmin.impl.EventAdmin.cfg 2022-04-03 18:24:34,071 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.kar.cfg 2022-04-03 18:24:34,110 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from jmx.acl.cfg 2022-04-03 18:24:34,140 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.config.cfg 2022-04-03 18:24:34,174 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.jaas.cfg 2022-04-03 18:24:34,218 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.shell.cfg 2022-04-03 18:24:34,256 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.ops4j.pax.url.mvn.cfg 2022-04-03 18:24:34,288 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.jaas.cfg 2022-04-03 18:24:34,321 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.feature.cfg 2022-04-03 18:24:34,361 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.bundle.cfg 2022-04-03 18:24:35,743 [activator-1-thread-2] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Adding features: cytoscape-karaf/[3.9.1,3.9.1],cytoscape-gui/[3.9.1,3.9.1] 2022-04-03 18:24:36,526 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Changes to perform: 2022-04-03 18:24:36,526 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Region: root 2022-04-03 18:24:36,526 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Bundles to install: 2022-04-03 18:24:36,527 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.activation/com.springsource.javax.activation/1.1.1 2022-04-03 18:24:36,527 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.xml.stream/com.springsource.javax.xml.stream/1.0.1 2022-04-03 18:24:36,527 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/edge-bundler-impl/3.9.1 2022-04-03 18:24:36,527 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.ws.rs/javax.ws.rs-api/2.1 2022-04-03 18:24:36,527 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.api/1.0.1 2022-04-03 18:24:36,527 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.cm/1.3.1 2022-04-03 18:24:36,528 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core/1.10.2 2022-04-03 18:24:36,528 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core.compatibility/1.0.0 2022-04-03 18:24:36,528 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.proxy/org.apache.aries.proxy/1.1.6 2022-04-03 18:24:36,528 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:commons-io/commons-io/2.1 2022-04-03 18:24:36,528 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.blueprintstate/4.2.8 2022-04-03 18:24:36,529 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.core/4.2.8 2022-04-03 18:24:36,529 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.blueprint/4.2.8 2022-04-03 18:24:36,529 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.features/4.2.8 2022-04-03 18:24:36,529 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.boot/4.2.8 2022-04-03 18:24:36,529 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 18:24:36,529 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.features/org.apache.karaf.features.command/4.2.8 2022-04-03 18:24:36,530 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.instance/org.apache.karaf.instance.core/4.2.8 2022-04-03 18:24:36,530 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas.blueprint/org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 18:24:36,530 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:24:36,530 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.config/4.2.8 2022-04-03 18:24:36,530 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.modules/4.2.8 2022-04-03 18:24:36,530 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.log/org.apache.karaf.log.core/4.2.8 2022-04-03 18:24:36,531 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.service/org.apache.karaf.service.core/4.2.8 2022-04-03 18:24:36,531 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.commands/4.2.8 2022-04-03 18:24:36,531 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.console/4.2.8 2022-04-03 18:24:36,531 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.core/4.2.8 2022-04-03 18:24:36,531 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.table/4.2.8 2022-04-03 18:24:36,532 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.system/org.apache.karaf.system.core/4.2.8 2022-04-03 18:24:36,532 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.jaxb-impl/2.1.6_1 2022-04-03 18:24:36,532 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.xmlbeans/2.4.0_5 2022-04-03 18:24:36,532 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-04-03 18:24:36,532 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-04-03 18:24:36,532 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-04-03 18:24:36,533 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-04-03 18:24:36,533 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/api-bundle/3.9.1 2022-04-03 18:24:36,533 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/app-impl/3.9.1 2022-04-03 18:24:36,533 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/application-impl/3.9.1 2022-04-03 18:24:36,533 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/application-metadata-impl/3.9.1 2022-04-03 18:24:36,534 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/cmdline/3.9.1 2022-04-03 18:24:36,535 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/cmdline-impl/3.9.1 2022-04-03 18:24:36,535 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/command-executor-impl/3.9.1 2022-04-03 18:24:36,535 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/core-task-impl/3.9.1 2022-04-03 18:24:36,535 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/custom-graphics-internal/3.9.1 2022-04-03 18:24:36,536 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/diagnostics-impl/3.9.1 2022-04-03 18:24:36,536 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/ding-presentation-impl/3.9.1 2022-04-03 18:24:36,536 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/editor-impl/3.9.1 2022-04-03 18:24:36,536 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-functions-impl/3.9.1 2022-04-03 18:24:36,536 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-impl/3.9.1 2022-04-03 18:24:36,537 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/event-impl/3.9.1 2022-04-03 18:24:36,537 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/filter2-impl/3.9.1 2022-04-03 18:24:36,537 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/graphml-impl/3.9.1 2022-04-03 18:24:36,537 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/group-impl/3.9.1 2022-04-03 18:24:36,537 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/gui-cmdline-parser-impl/3.9.1 2022-04-03 18:24:36,537 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/io-impl/3.9.1 2022-04-03 18:24:36,538 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/datasource-impl/3.9.1 2022-04-03 18:24:36,538 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/jobs-impl/3.9.1 2022-04-03 18:24:36,538 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-cytoscape-impl/3.9.1 2022-04-03 18:24:36,538 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-impl/3.9.1 2022-04-03 18:24:36,539 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-prefuse-impl/3.9.1 2022-04-03 18:24:36,539 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/linkout-impl/3.9.1 2022-04-03 18:24:36,539 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/manual-layout-impl/3.9.1 2022-04-03 18:24:36,539 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/model-impl/3.9.1 2022-04-03 18:24:36,539 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/presentation-impl/3.9.1 2022-04-03 18:24:36,539 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/property-impl/3.9.1 2022-04-03 18:24:36,539 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/scripting-impl/3.9.1 2022-04-03 18:24:36,540 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/search-impl/3.9.1 2022-04-03 18:24:36,540 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/session-impl/3.9.1 2022-04-03 18:24:36,540 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/splash-updater-impl/3.9.1 2022-04-03 18:24:36,540 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-application-impl/3.9.1 2022-04-03 18:24:36,540 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-util-impl/3.9.1 2022-04-03 18:24:36,540 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-browser-impl/3.9.1 2022-04-03 18:24:36,540 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-import-impl/3.9.1 2022-04-03 18:24:36,541 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-presentation-impl/3.9.1 2022-04-03 18:24:36,541 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/third-party/3.9.1 2022-04-03 18:24:36,541 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/util-impl/3.9.1 2022-04-03 18:24:36,541 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-impl/3.9.1 2022-04-03 18:24:36,541 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/viewmodel-impl/3.9.1 2022-04-03 18:24:36,541 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-core-impl/3.9.1 2022-04-03 18:24:36,541 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-impl/3.9.1 2022-04-03 18:24:36,542 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/webservice-impl/3.9.1 2022-04-03 18:24:36,542 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-impl/3.9.1 2022-04-03 18:24:36,542 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-swing-impl/3.9.1 2022-04-03 18:24:36,542 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-builtins/3.13.2 2022-04-03 18:24:36,542 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-reader/3.13.2 2022-04-03 18:24:36,542 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal/3.13.2 2022-04-03 18:24:36,542 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal-jansi/3.13.2 2022-04-03 18:24:36,542 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm/7.2 2022-04-03 18:24:36,543 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-commons/7.2 2022-04-03 18:24:36,543 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-tree/7.2 2022-04-03 18:24:36,543 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-analysis/7.2 2022-04-03 18:24:36,543 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-util/7.2 2022-04-03 18:24:36,543 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:cytoscape-temp/uk.ac.ebi.enfin.mi.cluster.micluster/1.6 2022-04-03 18:24:36,546 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Installing bundles: 2022-04-03 18:24:36,546 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.activation/com.springsource.javax.activation/1.1.1 2022-04-03 18:24:36,581 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.xml.stream/com.springsource.javax.xml.stream/1.0.1 2022-04-03 18:24:36,611 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/edge-bundler-impl/3.9.1 2022-04-03 18:24:36,635 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.ws.rs/javax.ws.rs-api/2.1 2022-04-03 18:24:36,664 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.api/1.0.1 2022-04-03 18:24:36,688 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.cm/1.3.1 2022-04-03 18:24:36,717 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core/1.10.2 2022-04-03 18:24:36,757 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core.compatibility/1.0.0 2022-04-03 18:24:36,781 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.proxy/org.apache.aries.proxy/1.1.6 2022-04-03 18:24:36,813 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:commons-io/commons-io/2.1 2022-04-03 18:24:36,845 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.blueprintstate/4.2.8 2022-04-03 18:24:36,870 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.core/4.2.8 2022-04-03 18:24:36,902 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.blueprint/4.2.8 2022-04-03 18:24:36,930 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.features/4.2.8 2022-04-03 18:24:36,960 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.boot/4.2.8 2022-04-03 18:24:36,994 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 18:24:37,022 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.features/org.apache.karaf.features.command/4.2.8 2022-04-03 18:24:37,064 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.instance/org.apache.karaf.instance.core/4.2.8 2022-04-03 18:24:37,099 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas.blueprint/org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 18:24:37,126 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:24:37,158 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.config/4.2.8 2022-04-03 18:24:37,185 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.modules/4.2.8 2022-04-03 18:24:37,238 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.log/org.apache.karaf.log.core/4.2.8 2022-04-03 18:24:37,271 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.service/org.apache.karaf.service.core/4.2.8 2022-04-03 18:24:37,299 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.commands/4.2.8 2022-04-03 18:24:37,331 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.console/4.2.8 2022-04-03 18:24:37,367 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.core/4.2.8 2022-04-03 18:24:37,418 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.table/4.2.8 2022-04-03 18:24:37,450 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.system/org.apache.karaf.system.core/4.2.8 2022-04-03 18:24:37,484 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.jaxb-impl/2.1.6_1 2022-04-03 18:24:37,543 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.xmlbeans/2.4.0_5 2022-04-03 18:24:37,615 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-04-03 18:24:37,650 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-04-03 18:24:37,676 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-04-03 18:24:37,702 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-04-03 18:24:37,727 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/api-bundle/3.9.1 2022-04-03 18:24:37,774 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/app-impl/3.9.1 2022-04-03 18:24:37,811 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/application-impl/3.9.1 2022-04-03 18:24:37,839 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/application-metadata-impl/3.9.1 2022-04-03 18:24:37,861 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/cmdline/3.9.1 2022-04-03 18:24:37,890 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/cmdline-impl/3.9.1 2022-04-03 18:24:37,916 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/command-executor-impl/3.9.1 2022-04-03 18:24:37,949 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/core-task-impl/3.9.1 2022-04-03 18:24:38,009 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/custom-graphics-internal/3.9.1 2022-04-03 18:24:38,056 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/diagnostics-impl/3.9.1 2022-04-03 18:24:38,087 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/ding-presentation-impl/3.9.1 2022-04-03 18:24:38,134 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/editor-impl/3.9.1 2022-04-03 18:24:38,165 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-functions-impl/3.9.1 2022-04-03 18:24:38,191 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-impl/3.9.1 2022-04-03 18:24:38,225 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/event-impl/3.9.1 2022-04-03 18:24:38,247 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/filter2-impl/3.9.1 2022-04-03 18:24:38,287 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/graphml-impl/3.9.1 2022-04-03 18:24:38,313 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/group-impl/3.9.1 2022-04-03 18:24:38,343 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/gui-cmdline-parser-impl/3.9.1 2022-04-03 18:24:38,373 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/io-impl/3.9.1 2022-04-03 18:24:38,419 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/datasource-impl/3.9.1 2022-04-03 18:24:38,445 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/jobs-impl/3.9.1 2022-04-03 18:24:38,471 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-cytoscape-impl/3.9.1 2022-04-03 18:24:38,508 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-impl/3.9.1 2022-04-03 18:24:38,530 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-prefuse-impl/3.9.1 2022-04-03 18:24:38,564 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/linkout-impl/3.9.1 2022-04-03 18:24:38,586 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/manual-layout-impl/3.9.1 2022-04-03 18:24:38,611 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/model-impl/3.9.1 2022-04-03 18:24:38,846 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/presentation-impl/3.9.1 2022-04-03 18:24:38,872 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/property-impl/3.9.1 2022-04-03 18:24:38,896 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/scripting-impl/3.9.1 2022-04-03 18:24:38,957 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/search-impl/3.9.1 2022-04-03 18:24:38,987 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/session-impl/3.9.1 2022-04-03 18:24:39,032 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/splash-updater-impl/3.9.1 2022-04-03 18:24:39,087 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-application-impl/3.9.1 2022-04-03 18:24:39,188 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-util-impl/3.9.1 2022-04-03 18:24:39,239 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-browser-impl/3.9.1 2022-04-03 18:24:39,282 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-import-impl/3.9.1 2022-04-03 18:24:39,517 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-presentation-impl/3.9.1 2022-04-03 18:24:39,564 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/third-party/3.9.1 2022-04-03 18:24:39,871 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/util-impl/3.9.1 2022-04-03 18:24:39,900 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-impl/3.9.1 2022-04-03 18:24:39,928 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/viewmodel-impl/3.9.1 2022-04-03 18:24:39,977 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-core-impl/3.9.1 2022-04-03 18:24:40,000 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-impl/3.9.1 2022-04-03 18:24:40,039 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/webservice-impl/3.9.1 2022-04-03 18:24:40,065 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-impl/3.9.1 2022-04-03 18:24:40,090 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-swing-impl/3.9.1 2022-04-03 18:24:40,129 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-builtins/3.13.2 2022-04-03 18:24:40,166 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-reader/3.13.2 2022-04-03 18:24:40,198 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal/3.13.2 2022-04-03 18:24:40,234 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal-jansi/3.13.2 2022-04-03 18:24:40,260 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm/7.2 2022-04-03 18:24:40,288 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-commons/7.2 2022-04-03 18:24:40,316 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-tree/7.2 2022-04-03 18:24:40,341 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-analysis/7.2 2022-04-03 18:24:40,365 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-util/7.2 2022-04-03 18:24:40,416 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:cytoscape-temp/uk.ac.ebi.enfin.mi.cluster.micluster/1.6 2022-04-03 18:24:41,876 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Starting bundles: 2022-04-03 18:24:41,879 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.diagnostics-impl/3.9.1 2022-04-03 18:24:41,891 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.splash-updater-impl/3.9.1 2022-04-03 18:24:41,903 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.api/1.0.1 2022-04-03 18:24:41,908 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm/7.2.0 2022-04-03 18:24:41,914 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.tree/7.2.0 2022-04-03 18:24:41,920 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.commons/7.2.0 2022-04-03 18:24:41,926 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.proxy/1.1.6 2022-04-03 18:24:41,939 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.core/1.10.2 2022-04-03 18:24:42,007 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintExtender - No quiesce support is available, so blueprint components will not participate in quiesce operations 2022-04-03 18:24:42,201 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.aries.blueprint.core/1.10.2 has been started 2022-04-03 18:24:42,202 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.tree.analysis/7.2.0 2022-04-03 18:24:42,208 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.util/7.2.0 2022-04-03 18:24:42,215 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.cm/1.3.1 2022-04-03 18:24:42,242 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.aries.blueprint.cm/1.3.1 has been started 2022-04-03 18:24:42,243 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.deployer.blueprint/4.2.8 2022-04-03 18:24:42,259 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.deployer.features/4.2.8 2022-04-03 18:24:42,281 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.terminal/3.13.2 2022-04-03 18:24:42,296 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.reader/3.13.2 2022-04-03 18:24:42,302 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.builtins/3.13.2 2022-04-03 18:24:42,307 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.core/4.2.8 2022-04-03 18:24:42,837 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.karaf.shell.core/4.2.8 has been started 2022-04-03 18:24:42,838 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.commands/4.2.8 2022-04-03 18:24:42,886 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.shell.commands/4.2.8 2022-04-03 18:24:42,889 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.config/4.2.8 2022-04-03 18:24:42,909 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.features.command/4.2.8 2022-04-03 18:24:42,946 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.features.command/4.2.8 2022-04-03 18:24:42,948 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.service.core/4.2.8 2022-04-03 18:24:42,969 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.service.core/4.2.8 2022-04-03 18:24:42,970 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.modules/4.2.8 2022-04-03 18:24:42,991 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.log.core/4.2.8 2022-04-03 18:24:43,021 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.log.core/4.2.8 2022-04-03 18:24:43,022 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 18:24:43,041 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 18:24:43,041 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 18:24:43,062 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.karaf.jaas.blueprint.config/4.2.8 has been started 2022-04-03 18:24:43,063 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.instance.core/4.2.8 2022-04-03 18:24:43,100 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.instance.core/4.2.8 2022-04-03 18:24:43,101 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:24:43,127 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:24:43,129 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Updating commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:24:43,131 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Updating commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:24:43,133 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.system.core/4.2.8 2022-04-03 18:24:43,152 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.system.core/4.2.8 2022-04-03 18:24:43,153 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.bundle.core/4.2.8 2022-04-03 18:24:43,192 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.bundle.core/4.2.8 2022-04-03 18:24:43,193 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.bundle.blueprintstate/4.2.8 2022-04-03 18:24:43,216 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.table/4.2.8 2022-04-03 18:24:43,239 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - com.springsource.javax.activation/1.1.1 2022-04-03 18:24:43,245 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-04-03 18:24:43,265 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - com.springsource.javax.xml.stream/1.0.1 2022-04-03 18:24:43,271 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-04-03 18:24:43,287 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.bundles.jaxb-impl/2.1.6.1 2022-04-03 18:24:43,292 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.third-party/3.9.1 2022-04-03 18:24:43,301 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - uk.ac.ebi.enfin.mi.cluster/1.6.0 2022-04-03 18:24:43,307 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-04-03 18:24:43,326 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-04-03 18:24:43,343 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.bundles.xmlbeans/2.4.0.5 2022-04-03 18:24:43,350 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.commons.io/2.1.0 2022-04-03 18:24:43,356 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - javax.ws.rs-api/2.1.0 2022-04-03 18:24:43,362 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.cmdline/3.9.1 2022-04-03 18:24:43,372 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.api-bundle/3.9.1 2022-04-03 18:24:43,383 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.cmdline-impl/3.9.1 2022-04-03 18:24:43,390 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.event-impl/3.9.1 2022-04-03 18:24:43,401 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.property.internal/3.9.1 2022-04-03 18:24:43,450 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.util-impl/3.9.1 2022-04-03 18:24:43,467 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.equations-impl/3.9.1 2022-04-03 18:24:43,510 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.io.datasource-impl/3.9.1 2022-04-03 18:24:43,528 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.application-impl/3.9.1 2022-04-03 18:24:43,540 [features-3-thread-1] INFO org.cytoscape.application.userlog - Setting file directory = /home/psgendb/CytoscapeConfiguration 2022-04-03 18:24:43,542 [features-3-thread-1] INFO org.cytoscape.application.userlog - Write tracker.active.session into /home/psgendb/CytoscapeConfiguration 2022-04-03 18:24:43,555 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.swing-util-impl/3.9.1 2022-04-03 18:24:43,606 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.presentation-impl/3.9.1 2022-04-03 18:24:43,617 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.model-impl/3.9.1 2022-04-03 18:24:44,070 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.work-impl/3.9.1 2022-04-03 18:24:44,130 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.work-swing-impl/3.9.1 2022-04-03 18:24:44,234 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.viewmodel-impl/3.9.1 2022-04-03 18:24:44,280 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.view.vizmap-impl/3.9.1 2022-04-03 18:24:44,350 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-impl/3.9.1 2022-04-03 18:24:44,363 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.group-impl/3.9.1 2022-04-03 18:24:44,519 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.vizmap-gui-core-impl/3.9.1 2022-04-03 18:24:44,528 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.session-impl/3.9.1 2022-04-03 18:24:44,542 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.custom-graphics-internal/3.9.1 2022-04-03 18:24:44,759 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.ding-presentation-impl/3.9.1 2022-04-03 18:24:44,924 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-presentation-impl/3.9.1 2022-04-03 18:24:45,000 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.io-impl/3.9.1 2022-04-03 18:24:45,091 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.core-task-impl/3.9.1 2022-04-03 18:24:45,247 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.command-executor-impl/3.9.1 2022-04-03 18:24:45,307 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.swing-application-impl/3.9.1 2022-04-03 18:24:46,467 [features-3-thread-1] WARN org.cytoscape.application.userlog - The virtual key 'VK_?' does not exist. 2022-04-03 18:24:46,711 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.jobs-impl/3.9.1 2022-04-03 18:24:46,784 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-import-impl/3.9.1 2022-04-03 18:24:47,269 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.webservice-impl/3.9.1 2022-04-03 18:24:47,407 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.search-impl/3.9.1 2022-04-03 18:24:47,435 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.linkout-impl/3.9.1 2022-04-03 18:24:47,469 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-cytoscape-impl/3.9.1 2022-04-03 18:24:47,511 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.vizmap-gui-impl/3.9.1 2022-04-03 18:24:47,875 [features-3-thread-1] INFO org.cytoscape.application.userlog - CyNetwork w/ private tables created: ID = 2 2022-04-03 18:24:47,876 [features-3-thread-1] INFO org.cytoscape.application.userlog - CyNetwork w/ private tables created: Base Graph ID = 43 2022-04-03 18:24:48,148 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.filter2-impl/3.9.1 2022-04-03 18:24:48,355 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.editor-impl/3.9.1 2022-04-03 18:24:48,378 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - edge-bundler/3.9.1 2022-04-03 18:24:48,396 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.graphml-impl/3.9.1 2022-04-03 18:24:48,407 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-prefuse-impl/3.9.1 2022-04-03 18:24:48,420 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.manual-layout-impl/3.9.1 2022-04-03 18:24:48,568 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-browser-impl/3.9.1 2022-04-03 18:24:48,765 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.app-impl/3.9.1 2022-04-03 18:24:48,879 [pool-10-thread-1] INFO org.cytoscape.application.userlog - Server socket started on 127.0.0.1:2607 2022-04-03 18:24:48,894 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.scripting-impl/3.9.1 2022-04-03 18:24:48,921 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.cytoscape.scripting-impl/3.9.1 is waiting for namespace handlers [http://karaf.apache.org/xmlns/shell/v1.0.1, http://www.osgi.org/xmlns/blueprint/v1.0.1] 2022-04-03 18:24:48,923 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.gui-cmdline-parser-impl/3.9.1 2022-04-03 18:24:48,940 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.equations-functions-impl/3.9.1 2022-04-03 18:24:48,958 [features-3-thread-1] INFO org.apache.karaf.deployer.features.osgi.Activator - Deployment finished. Registering FeatureDeploymentListener 2022-04-03 18:24:49,880 [pool-9-thread-1] INFO org.cytoscape.io.webservice.biomart.rest.BiomartRestClient - Biomart Service URL is: http://www.ensembl.org/biomart/martservice 2022-04-03 18:24:49,942 [pool-9-thread-1] INFO org.cytoscape.application.userlog - New network import client registered: BioMart Client 2022-04-03 18:24:50,245 [pool-9-thread-1] INFO org.cytoscape.application.userlog - New network import client registered: Universal Interaction Database Client 2022-04-03 18:24:50,366 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Done. 2022-04-03 18:24:51,464 [pool-9-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-04-03 18:24:51,466 [pool-9-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-04-03 18:24:51,467 [pool-9-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-04-03 18:24:51,726 [Thread-16] ERROR org.cytoscape.opencl.layout.CyActivator - No OpenCL compatible device found. Cannot register 'Prefuse Force Directed OpenCL Layout'. 2022-04-03 18:24:51,889 [Task-Thread-1-Factory-0x4dcb2a] INFO org.cytoscape.io.internal.read.GenericReaderManager - Filter returns Accepted. Need to check priority: org.cytoscape.io.internal.read.vizmap.VizmapXMLReaderFactory@68d7b5ac 2022-04-03 18:24:51,889 [Task-Thread-1-Factory-0x4dcb2a] INFO org.cytoscape.io.internal.read.GenericReaderManager - Successfully found compatible ReaderFactory org.cytoscape.io.internal.read.vizmap.VizmapXMLReaderFactory@68d7b5ac 2022-04-03 18:24:51,905 [Task-Thread-3-Factory-0x4dcb2a] INFO org.cytoscape.application.userlog - Custom Graphics Image property file loaded from: /home/psgendb/CytoscapeConfiguration/images3 2022-04-03 18:24:51,911 [Task-Thread-3-Factory-0x4dcb2a] INFO org.cytoscape.application.userlog - Image loading process finished in 0.01 sec. 2022-04-03 18:24:51,911 [Task-Thread-3-Factory-0x4dcb2a] INFO org.cytoscape.application.userlog - Currently, -1 images are available. 2022-04-03 18:24:52,577 [Task-Thread-3-Factory-0x4dcb2a] INFO org.cytoscape.application.userlog - Image saving process finished in 0.68 sec. 2022-04-03 18:24:54,690 [pool-9-thread-1] INFO org.cytoscape.diffusion.internal.rest.RemoteLogger - No property set for cytoscape.remotelogging.senderaddressservicehostname; setting logger sender address service hostname to: http://35.197.44.209 2022-04-03 18:24:54,756 [pool-84-thread-1] INFO org.cytoscape.rest.internal.CyActivator - Initializing cyREST API server... 2022-04-03 18:24:56,447 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Examining bundle for SPI provider: org.eclipse.jetty.http 2022-04-03 18:24:56,452 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Found SPI resource: bundle://138.0:0/META-INF/services/org.eclipse.jetty.http.HttpFieldPreEncoder 2022-04-03 18:24:56,487 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Loaded SPI provider: class org.eclipse.jetty.http.Http1FieldPreEncoder 2022-04-03 18:24:56,489 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Registered service: org.apache.felix.framework.ServiceRegistrationImpl@103d324d 2022-04-03 18:24:56,489 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Registered provider: org.eclipse.jetty.http.HttpFieldPreEncoder in bundle org.eclipse.jetty.http 2022-04-03 18:24:57,694 [pool-84-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Command registration delayed for bundle org.apache.karaf.http.core/4.2.8. Missing service: [org.apache.karaf.http.core.ServletService, org.apache.karaf.http.core.ProxyService] 2022-04-03 18:24:57,940 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - Start Saving images to: /home/psgendb/CytoscapeConfiguration/images3 2022-04-03 18:24:57,943 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - ========== Image saving process finished ============= 2022-04-03 18:24:57,959 [Task-Thread-3-Factory-0x4dcb2a] INFO org.cytoscape.application.userlog - Image saving process finished in 0.012 sec. 2022-04-03 18:24:58,038 [activator-1-thread-2] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 18:24:58,045 [activator-1-thread-2] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 18:24:58,057 [activator-1-thread-2] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 18:24:58,062 [activator-1-thread-2] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 18:24:58,073 [activator-1-thread-2] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 18:24:58,076 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - #CiaoBello 2022-04-03 18:24:58,097 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.karaf.shell.core/4.2.8 2022-04-03 18:24:58,112 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.cytoscape.scripting-impl/3.9.1 2022-04-03 18:24:58,106 [pool-84-thread-1] ERROR org.cytoscape.rest.internal.CyActivator - Failed to initialize cyREST server. org.osgi.framework.BundleException: The framework has been shutdown. at org.apache.felix.framework.Felix.installBundle(Felix.java:2995) ~[?:?] at org.apache.felix.framework.BundleContextImpl.installBundle(BundleContextImpl.java:167) ~[?:?] at org.cytoscape.rest.internal.task.OSGiJAXRSManager.installBundleFromResource(OSGiJAXRSManager.java:266) ~[!/:?] at org.cytoscape.rest.internal.task.OSGiJAXRSManager.installBundlesFromResources(OSGiJAXRSManager.java:238) ~[!/:?] at org.cytoscape.rest.internal.task.OSGiJAXRSManager.installOSGiJAXRSBundles(OSGiJAXRSManager.java:126) ~[!/:?] at org.cytoscape.rest.internal.CyActivator.lambda$startCyREST$0(CyActivator.java:325) [!/:?] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515) [?:?] at java.util.concurrent.FutureTask.run(FutureTask.java:264) [?:?] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) [?:?] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) [?:?] at java.lang.Thread.run(Thread.java:829) [?:?] 2022-04-03 18:24:58,118 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 18:24:58,128 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.aries.blueprint.cm/1.3.1 2022-04-03 18:24:58,138 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.aries.blueprint.core/1.10.2 2022-04-03 18:24:58,182 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 18:24:58,237 [FelixStartLevel] INFO org.apache.aries.spifly.BaseActivator - Unregistered: org.apache.felix.framework.ServiceRegistrationImpl@103d324d 2022-04-03 18:24:58,307 [FelixStartLevel] INFO org.cytoscape.cyndex2.internal.CyActivator - Shutting down CyNDEx-2... 2022-04-03 18:24:58,368 [FelixStartLevel] INFO org.cytoscape.rest.internal.CyActivator - Shutting down REST server... 2022-04-03 18:24:59,069 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.system.core/4.2.8 2022-04-03 18:24:59,083 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.shell.commands/4.2.8 2022-04-03 18:24:59,085 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.features.command/4.2.8 2022-04-03 18:24:59,086 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.instance.core/4.2.8 2022-04-03 18:24:59,088 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:24:59,089 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.service.core/4.2.8 2022-04-03 18:24:59,090 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.log.core/4.2.8 2022-04-03 18:24:59,092 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.bundle.core/4.2.8 2022-04-03 18:24:59,093 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 18:29:36,643 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from jmx.acl.cfg 2022-04-03 18:29:36,695 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.config.cfg 2022-04-03 18:29:36,736 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.jaas.cfg 2022-04-03 18:29:36,766 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.shell.cfg 2022-04-03 18:29:36,798 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.ops4j.pax.url.mvn.cfg 2022-04-03 18:29:36,833 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.jaas.cfg 2022-04-03 18:29:36,869 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.feature.cfg 2022-04-03 18:29:36,910 [FelixStartLevel] INFO org.apache.felix.fileinstall - Creating configuration from org.apache.karaf.command.acl.bundle.cfg 2022-04-03 18:29:38,314 [activator-1-thread-2] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Adding features: cytoscape-karaf/[3.9.1,3.9.1],cytoscape-gui/[3.9.1,3.9.1] 2022-04-03 18:29:39,084 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Changes to perform: 2022-04-03 18:29:39,084 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Region: root 2022-04-03 18:29:39,084 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Bundles to install: 2022-04-03 18:29:39,085 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.activation/com.springsource.javax.activation/1.1.1 2022-04-03 18:29:39,085 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.xml.stream/com.springsource.javax.xml.stream/1.0.1 2022-04-03 18:29:39,085 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/edge-bundler-impl/3.9.1 2022-04-03 18:29:39,085 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.ws.rs/javax.ws.rs-api/2.1 2022-04-03 18:29:39,085 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.api/1.0.1 2022-04-03 18:29:39,085 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.cm/1.3.1 2022-04-03 18:29:39,086 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core/1.10.2 2022-04-03 18:29:39,086 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core.compatibility/1.0.0 2022-04-03 18:29:39,086 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.proxy/org.apache.aries.proxy/1.1.6 2022-04-03 18:29:39,086 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:commons-io/commons-io/2.1 2022-04-03 18:29:39,086 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.blueprintstate/4.2.8 2022-04-03 18:29:39,086 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.core/4.2.8 2022-04-03 18:29:39,087 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.blueprint/4.2.8 2022-04-03 18:29:39,087 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.features/4.2.8 2022-04-03 18:29:39,087 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.boot/4.2.8 2022-04-03 18:29:39,087 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 18:29:39,087 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.features/org.apache.karaf.features.command/4.2.8 2022-04-03 18:29:39,088 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.instance/org.apache.karaf.instance.core/4.2.8 2022-04-03 18:29:39,088 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas.blueprint/org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 18:29:39,088 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:29:39,088 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.config/4.2.8 2022-04-03 18:29:39,088 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.modules/4.2.8 2022-04-03 18:29:39,088 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.log/org.apache.karaf.log.core/4.2.8 2022-04-03 18:29:39,089 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.service/org.apache.karaf.service.core/4.2.8 2022-04-03 18:29:39,089 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.commands/4.2.8 2022-04-03 18:29:39,089 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.console/4.2.8 2022-04-03 18:29:39,089 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.core/4.2.8 2022-04-03 18:29:39,089 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.table/4.2.8 2022-04-03 18:29:39,089 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.system/org.apache.karaf.system.core/4.2.8 2022-04-03 18:29:39,090 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.jaxb-impl/2.1.6_1 2022-04-03 18:29:39,090 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.xmlbeans/2.4.0_5 2022-04-03 18:29:39,090 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-04-03 18:29:39,090 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-04-03 18:29:39,090 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-04-03 18:29:39,091 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-04-03 18:29:39,091 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/api-bundle/3.9.1 2022-04-03 18:29:39,091 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/app-impl/3.9.1 2022-04-03 18:29:39,091 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/application-impl/3.9.1 2022-04-03 18:29:39,091 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/application-metadata-impl/3.9.1 2022-04-03 18:29:39,091 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/cmdline/3.9.1 2022-04-03 18:29:39,092 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/cmdline-impl/3.9.1 2022-04-03 18:29:39,092 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/command-executor-impl/3.9.1 2022-04-03 18:29:39,092 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/core-task-impl/3.9.1 2022-04-03 18:29:39,092 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/custom-graphics-internal/3.9.1 2022-04-03 18:29:39,092 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/diagnostics-impl/3.9.1 2022-04-03 18:29:39,092 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/ding-presentation-impl/3.9.1 2022-04-03 18:29:39,093 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/editor-impl/3.9.1 2022-04-03 18:29:39,093 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-functions-impl/3.9.1 2022-04-03 18:29:39,093 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-impl/3.9.1 2022-04-03 18:29:39,093 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/event-impl/3.9.1 2022-04-03 18:29:39,093 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/filter2-impl/3.9.1 2022-04-03 18:29:39,094 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/graphml-impl/3.9.1 2022-04-03 18:29:39,094 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/group-impl/3.9.1 2022-04-03 18:29:39,094 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/gui-cmdline-parser-impl/3.9.1 2022-04-03 18:29:39,094 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/io-impl/3.9.1 2022-04-03 18:29:39,094 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/datasource-impl/3.9.1 2022-04-03 18:29:39,094 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/jobs-impl/3.9.1 2022-04-03 18:29:39,095 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-cytoscape-impl/3.9.1 2022-04-03 18:29:39,095 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-impl/3.9.1 2022-04-03 18:29:39,095 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-prefuse-impl/3.9.1 2022-04-03 18:29:39,095 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/linkout-impl/3.9.1 2022-04-03 18:29:39,095 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/manual-layout-impl/3.9.1 2022-04-03 18:29:39,095 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/model-impl/3.9.1 2022-04-03 18:29:39,096 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/presentation-impl/3.9.1 2022-04-03 18:29:39,096 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/property-impl/3.9.1 2022-04-03 18:29:39,096 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/scripting-impl/3.9.1 2022-04-03 18:29:39,096 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/search-impl/3.9.1 2022-04-03 18:29:39,096 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/session-impl/3.9.1 2022-04-03 18:29:39,096 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/splash-updater-impl/3.9.1 2022-04-03 18:29:39,096 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-application-impl/3.9.1 2022-04-03 18:29:39,097 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-util-impl/3.9.1 2022-04-03 18:29:39,097 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-browser-impl/3.9.1 2022-04-03 18:29:39,097 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-import-impl/3.9.1 2022-04-03 18:29:39,097 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-presentation-impl/3.9.1 2022-04-03 18:29:39,097 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/third-party/3.9.1 2022-04-03 18:29:39,097 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/util-impl/3.9.1 2022-04-03 18:29:39,098 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-impl/3.9.1 2022-04-03 18:29:39,098 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/viewmodel-impl/3.9.1 2022-04-03 18:29:39,098 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-core-impl/3.9.1 2022-04-03 18:29:39,098 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-impl/3.9.1 2022-04-03 18:29:39,098 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/webservice-impl/3.9.1 2022-04-03 18:29:39,099 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-impl/3.9.1 2022-04-03 18:29:39,099 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-swing-impl/3.9.1 2022-04-03 18:29:39,099 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-builtins/3.13.2 2022-04-03 18:29:39,100 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-reader/3.13.2 2022-04-03 18:29:39,100 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal/3.13.2 2022-04-03 18:29:39,100 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal-jansi/3.13.2 2022-04-03 18:29:39,101 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm/7.2 2022-04-03 18:29:39,101 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-commons/7.2 2022-04-03 18:29:39,101 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-tree/7.2 2022-04-03 18:29:39,101 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-analysis/7.2 2022-04-03 18:29:39,101 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-util/7.2 2022-04-03 18:29:39,101 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:cytoscape-temp/uk.ac.ebi.enfin.mi.cluster.micluster/1.6 2022-04-03 18:29:39,105 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Installing bundles: 2022-04-03 18:29:39,105 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.activation/com.springsource.javax.activation/1.1.1 2022-04-03 18:29:39,150 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.xml.stream/com.springsource.javax.xml.stream/1.0.1 2022-04-03 18:29:39,182 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/edge-bundler-impl/3.9.1 2022-04-03 18:29:39,228 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:javax.ws.rs/javax.ws.rs-api/2.1 2022-04-03 18:29:39,266 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.api/1.0.1 2022-04-03 18:29:39,298 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.cm/1.3.1 2022-04-03 18:29:39,327 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core/1.10.2 2022-04-03 18:29:39,369 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.blueprint/org.apache.aries.blueprint.core.compatibility/1.0.0 2022-04-03 18:29:39,395 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.aries.proxy/org.apache.aries.proxy/1.1.6 2022-04-03 18:29:39,442 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:commons-io/commons-io/2.1 2022-04-03 18:29:39,476 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.blueprintstate/4.2.8 2022-04-03 18:29:39,504 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.bundle/org.apache.karaf.bundle.core/4.2.8 2022-04-03 18:29:39,551 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.blueprint/4.2.8 2022-04-03 18:29:39,579 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.features/4.2.8 2022-04-03 18:29:39,605 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.boot/4.2.8 2022-04-03 18:29:39,630 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 18:29:39,657 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.features/org.apache.karaf.features.command/4.2.8 2022-04-03 18:29:39,686 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.instance/org.apache.karaf.instance.core/4.2.8 2022-04-03 18:29:39,726 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas.blueprint/org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 18:29:39,752 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:29:39,779 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.config/4.2.8 2022-04-03 18:29:39,808 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.modules/4.2.8 2022-04-03 18:29:39,861 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.log/org.apache.karaf.log.core/4.2.8 2022-04-03 18:29:39,893 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.service/org.apache.karaf.service.core/4.2.8 2022-04-03 18:29:39,922 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.commands/4.2.8 2022-04-03 18:29:39,954 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.console/4.2.8 2022-04-03 18:29:39,991 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.core/4.2.8 2022-04-03 18:29:40,036 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.shell/org.apache.karaf.shell.table/4.2.8 2022-04-03 18:29:40,068 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.karaf.system/org.apache.karaf.system.core/4.2.8 2022-04-03 18:29:40,101 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.jaxb-impl/2.1.6_1 2022-04-03 18:29:40,145 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.bundles/org.apache.servicemix.bundles.xmlbeans/2.4.0_5 2022-04-03 18:29:40,213 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-04-03 18:29:40,250 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-04-03 18:29:40,278 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-04-03 18:29:40,306 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.apache.servicemix.specs/org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-04-03 18:29:40,332 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/api-bundle/3.9.1 2022-04-03 18:29:40,381 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/app-impl/3.9.1 2022-04-03 18:29:40,417 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/application-impl/3.9.1 2022-04-03 18:29:40,444 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/application-metadata-impl/3.9.1 2022-04-03 18:29:40,469 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/cmdline/3.9.1 2022-04-03 18:29:40,493 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/cmdline-impl/3.9.1 2022-04-03 18:29:40,518 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/command-executor-impl/3.9.1 2022-04-03 18:29:40,571 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/core-task-impl/3.9.1 2022-04-03 18:29:40,633 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/custom-graphics-internal/3.9.1 2022-04-03 18:29:40,677 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/diagnostics-impl/3.9.1 2022-04-03 18:29:40,702 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/ding-presentation-impl/3.9.1 2022-04-03 18:29:40,755 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/editor-impl/3.9.1 2022-04-03 18:29:40,783 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-functions-impl/3.9.1 2022-04-03 18:29:40,815 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/equations-impl/3.9.1 2022-04-03 18:29:40,854 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/event-impl/3.9.1 2022-04-03 18:29:40,882 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/filter2-impl/3.9.1 2022-04-03 18:29:40,931 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/graphml-impl/3.9.1 2022-04-03 18:29:40,991 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/group-impl/3.9.1 2022-04-03 18:29:41,029 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/gui-cmdline-parser-impl/3.9.1 2022-04-03 18:29:41,055 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/io-impl/3.9.1 2022-04-03 18:29:41,092 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/datasource-impl/3.9.1 2022-04-03 18:29:41,119 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/jobs-impl/3.9.1 2022-04-03 18:29:41,146 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-cytoscape-impl/3.9.1 2022-04-03 18:29:41,182 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-impl/3.9.1 2022-04-03 18:29:41,208 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/layout-prefuse-impl/3.9.1 2022-04-03 18:29:41,233 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/linkout-impl/3.9.1 2022-04-03 18:29:41,260 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/manual-layout-impl/3.9.1 2022-04-03 18:29:41,291 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/model-impl/3.9.1 2022-04-03 18:29:41,520 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/presentation-impl/3.9.1 2022-04-03 18:29:41,560 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/property-impl/3.9.1 2022-04-03 18:29:41,583 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/scripting-impl/3.9.1 2022-04-03 18:29:41,609 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/search-impl/3.9.1 2022-04-03 18:29:41,635 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/session-impl/3.9.1 2022-04-03 18:29:41,660 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/splash-updater-impl/3.9.1 2022-04-03 18:29:41,685 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-application-impl/3.9.1 2022-04-03 18:29:41,772 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/swing-util-impl/3.9.1 2022-04-03 18:29:41,801 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-browser-impl/3.9.1 2022-04-03 18:29:41,841 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-import-impl/3.9.1 2022-04-03 18:29:42,077 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/table-presentation-impl/3.9.1 2022-04-03 18:29:42,122 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape.distribution/third-party/3.9.1 2022-04-03 18:29:42,427 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/util-impl/3.9.1 2022-04-03 18:29:42,457 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-impl/3.9.1 2022-04-03 18:29:42,489 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/viewmodel-impl/3.9.1 2022-04-03 18:29:42,531 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-core-impl/3.9.1 2022-04-03 18:29:42,554 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/vizmap-gui-impl/3.9.1 2022-04-03 18:29:42,590 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/webservice-impl/3.9.1 2022-04-03 18:29:42,615 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-impl/3.9.1 2022-04-03 18:29:42,639 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.cytoscape/work-swing-impl/3.9.1 2022-04-03 18:29:42,669 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-builtins/3.13.2 2022-04-03 18:29:42,702 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-reader/3.13.2 2022-04-03 18:29:42,729 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal/3.13.2 2022-04-03 18:29:42,758 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.jline/jline-terminal-jansi/3.13.2 2022-04-03 18:29:42,780 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm/7.2 2022-04-03 18:29:42,804 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-commons/7.2 2022-04-03 18:29:42,830 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-tree/7.2 2022-04-03 18:29:42,852 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-analysis/7.2 2022-04-03 18:29:42,875 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:org.ow2.asm/asm-util/7.2 2022-04-03 18:29:42,899 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - mvn:cytoscape-temp/uk.ac.ebi.enfin.mi.cluster.micluster/1.6 2022-04-03 18:29:44,505 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Starting bundles: 2022-04-03 18:29:44,508 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.splash-updater-impl/3.9.1 2022-04-03 18:29:44,518 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.diagnostics-impl/3.9.1 2022-04-03 18:29:44,535 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm/7.2.0 2022-04-03 18:29:44,556 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.api/1.0.1 2022-04-03 18:29:44,561 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.tree/7.2.0 2022-04-03 18:29:44,565 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.commons/7.2.0 2022-04-03 18:29:44,571 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.proxy/1.1.6 2022-04-03 18:29:44,584 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.core/1.10.2 2022-04-03 18:29:44,636 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintExtender - No quiesce support is available, so blueprint components will not participate in quiesce operations 2022-04-03 18:29:44,840 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.aries.blueprint.core/1.10.2 has been started 2022-04-03 18:29:44,841 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.aries.blueprint.cm/1.3.1 2022-04-03 18:29:44,888 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.aries.blueprint.cm/1.3.1 has been started 2022-04-03 18:29:44,889 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.tree.analysis/7.2.0 2022-04-03 18:29:44,893 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.objectweb.asm.util/7.2.0 2022-04-03 18:29:44,899 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.deployer.blueprint/4.2.8 2022-04-03 18:29:44,916 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.deployer.features/4.2.8 2022-04-03 18:29:44,937 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.terminal/3.13.2 2022-04-03 18:29:44,943 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.reader/3.13.2 2022-04-03 18:29:44,949 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.jline.builtins/3.13.2 2022-04-03 18:29:44,955 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.core/4.2.8 2022-04-03 18:29:45,515 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.karaf.shell.core/4.2.8 has been started 2022-04-03 18:29:45,516 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.features.command/4.2.8 2022-04-03 18:29:45,568 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.features.command/4.2.8 2022-04-03 18:29:45,572 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.instance.core/4.2.8 2022-04-03 18:29:45,627 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.instance.core/4.2.8 2022-04-03 18:29:45,628 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.log.core/4.2.8 2022-04-03 18:29:45,661 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Command registration delayed for bundle org.apache.karaf.log.core/4.2.8. Missing service: [org.apache.karaf.log.core.LogService, org.apache.karaf.log.core.LogEventFormatter] 2022-04-03 18:29:45,662 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.config/4.2.8 2022-04-03 18:29:45,664 [activator-1-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.log.core/4.2.8 2022-04-03 18:29:45,679 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.modules/4.2.8 2022-04-03 18:29:45,696 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:29:45,724 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:29:45,726 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Updating commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:29:45,729 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Updating commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:29:45,730 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 18:29:45,748 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 18:29:45,749 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.bundle.core/4.2.8 2022-04-03 18:29:45,813 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.bundle.core/4.2.8 2022-04-03 18:29:45,814 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.bundle.blueprintstate/4.2.8 2022-04-03 18:29:45,839 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.service.core/4.2.8 2022-04-03 18:29:45,856 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.service.core/4.2.8 2022-04-03 18:29:45,856 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.system.core/4.2.8 2022-04-03 18:29:45,875 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.system.core/4.2.8 2022-04-03 18:29:45,876 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.commands/4.2.8 2022-04-03 18:29:45,898 [features-3-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.shell.commands/4.2.8 2022-04-03 18:29:45,899 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 18:29:45,919 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.apache.karaf.jaas.blueprint.config/4.2.8 has been started 2022-04-03 18:29:45,920 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.karaf.shell.table/4.2.8 2022-04-03 18:29:45,943 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - com.springsource.javax.activation/1.1.1 2022-04-03 18:29:45,950 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - com.springsource.javax.xml.stream/1.0.1 2022-04-03 18:29:45,956 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.stax-api-1.0/2.9.0 2022-04-03 18:29:45,975 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.jaxb-api-2.1/1.2.0 2022-04-03 18:29:45,991 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.bundles.jaxb-impl/2.1.6.1 2022-04-03 18:29:45,997 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - uk.ac.ebi.enfin.mi.cluster/1.6.0 2022-04-03 18:29:46,003 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.third-party/3.9.1 2022-04-03 18:29:46,012 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.saaj-api-1.3/2.9.0 2022-04-03 18:29:46,029 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.specs.jaxws-api-2.2/2.9.0 2022-04-03 18:29:46,051 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.servicemix.bundles.xmlbeans/2.4.0.5 2022-04-03 18:29:46,058 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.apache.commons.io/2.1.0 2022-04-03 18:29:46,064 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - javax.ws.rs-api/2.1.0 2022-04-03 18:29:46,071 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.cmdline/3.9.1 2022-04-03 18:29:46,078 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.api-bundle/3.9.1 2022-04-03 18:29:46,089 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.property.internal/3.9.1 2022-04-03 18:29:46,138 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.event-impl/3.9.1 2022-04-03 18:29:46,149 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.cmdline-impl/3.9.1 2022-04-03 18:29:46,156 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.util-impl/3.9.1 2022-04-03 18:29:46,173 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.equations-impl/3.9.1 2022-04-03 18:29:46,212 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.io.datasource-impl/3.9.1 2022-04-03 18:29:46,230 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.application-impl/3.9.1 2022-04-03 18:29:46,241 [features-3-thread-1] INFO org.cytoscape.application.userlog - Setting file directory = /home/psgendb/CytoscapeConfiguration 2022-04-03 18:29:46,242 [features-3-thread-1] INFO org.cytoscape.application.userlog - Write tracker.active.session into /home/psgendb/CytoscapeConfiguration 2022-04-03 18:29:46,255 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.swing-util-impl/3.9.1 2022-04-03 18:29:46,306 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.work-impl/3.9.1 2022-04-03 18:29:46,328 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.work-swing-impl/3.9.1 2022-04-03 18:29:46,371 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.presentation-impl/3.9.1 2022-04-03 18:29:46,384 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.model-impl/3.9.1 2022-04-03 18:29:46,774 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.view.vizmap-impl/3.9.1 2022-04-03 18:29:46,841 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.viewmodel-impl/3.9.1 2022-04-03 18:29:46,888 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-impl/3.9.1 2022-04-03 18:29:46,903 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.group-impl/3.9.1 2022-04-03 18:29:47,067 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.session-impl/3.9.1 2022-04-03 18:29:47,094 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.vizmap-gui-core-impl/3.9.1 2022-04-03 18:29:47,103 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.custom-graphics-internal/3.9.1 2022-04-03 18:29:47,268 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.ding-presentation-impl/3.9.1 2022-04-03 18:29:47,422 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-presentation-impl/3.9.1 2022-04-03 18:29:47,494 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.io-impl/3.9.1 2022-04-03 18:29:47,581 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.core-task-impl/3.9.1 2022-04-03 18:29:47,734 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.command-executor-impl/3.9.1 2022-04-03 18:29:47,793 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.swing-application-impl/3.9.1 2022-04-03 18:29:49,027 [features-3-thread-1] WARN org.cytoscape.application.userlog - The virtual key 'VK_?' does not exist. 2022-04-03 18:29:49,277 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.jobs-impl/3.9.1 2022-04-03 18:29:49,345 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-cytoscape-impl/3.9.1 2022-04-03 18:29:49,381 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.vizmap-gui-impl/3.9.1 2022-04-03 18:29:49,784 [features-3-thread-1] INFO org.cytoscape.application.userlog - CyNetwork w/ private tables created: ID = 2 2022-04-03 18:29:49,785 [features-3-thread-1] INFO org.cytoscape.application.userlog - CyNetwork w/ private tables created: Base Graph ID = 43 2022-04-03 18:29:50,087 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-browser-impl/3.9.1 2022-04-03 18:29:50,315 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.search-impl/3.9.1 2022-04-03 18:29:50,372 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.graphml-impl/3.9.1 2022-04-03 18:29:50,383 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.manual-layout-impl/3.9.1 2022-04-03 18:29:50,535 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.editor-impl/3.9.1 2022-04-03 18:29:50,558 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.layout-prefuse-impl/3.9.1 2022-04-03 18:29:50,587 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.table-import-impl/3.9.1 2022-04-03 18:29:51,123 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.filter2-impl/3.9.1 2022-04-03 18:29:51,398 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - edge-bundler/3.9.1 2022-04-03 18:29:51,413 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.webservice-impl/3.9.1 2022-04-03 18:29:51,487 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.linkout-impl/3.9.1 2022-04-03 18:29:51,514 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.app-impl/3.9.1 2022-04-03 18:29:51,636 [pool-10-thread-1] INFO org.cytoscape.application.userlog - Server socket started on 127.0.0.1:2607 2022-04-03 18:29:51,651 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.scripting-impl/3.9.1 2022-04-03 18:29:51,678 [features-3-thread-1] INFO org.apache.aries.blueprint.container.BlueprintContainerImpl - Blueprint bundle org.cytoscape.scripting-impl/3.9.1 is waiting for namespace handlers [http://karaf.apache.org/xmlns/shell/v1.0.1, http://www.osgi.org/xmlns/blueprint/v1.0.1] 2022-04-03 18:29:51,679 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.gui-cmdline-parser-impl/3.9.1 2022-04-03 18:29:51,698 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - org.cytoscape.equations-functions-impl/3.9.1 2022-04-03 18:29:51,724 [features-3-thread-1] INFO org.apache.karaf.deployer.features.osgi.Activator - Deployment finished. Registering FeatureDeploymentListener 2022-04-03 18:29:52,971 [pool-9-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-04-03 18:29:52,973 [pool-9-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-04-03 18:29:52,975 [pool-9-thread-1] WARN org.cytoscape.application.userlog - Specified factory is null or has wrong DataCategory (SESSION) 2022-04-03 18:29:53,171 [features-3-thread-1] INFO org.apache.karaf.features.internal.service.FeaturesServiceImpl - Done. 2022-04-03 18:29:53,345 [pool-9-thread-1] INFO org.cytoscape.application.userlog - New network import client registered: Universal Interaction Database Client 2022-04-03 18:29:53,379 [pool-9-thread-1] INFO org.cytoscape.io.webservice.biomart.rest.BiomartRestClient - Biomart Service URL is: http://www.ensembl.org/biomart/martservice 2022-04-03 18:29:53,432 [pool-9-thread-1] INFO org.cytoscape.application.userlog - New network import client registered: BioMart Client 2022-04-03 18:29:54,678 [Thread-17] ERROR org.cytoscape.opencl.layout.CyActivator - No OpenCL compatible device found. Cannot register 'Prefuse Force Directed OpenCL Layout'. 2022-04-03 18:29:54,846 [Task-Thread-1-Factory-0x4b7635dd] INFO org.cytoscape.io.internal.read.GenericReaderManager - Filter returns Accepted. Need to check priority: org.cytoscape.io.internal.read.vizmap.VizmapXMLReaderFactory@100f6364 2022-04-03 18:29:54,846 [Task-Thread-1-Factory-0x4b7635dd] INFO org.cytoscape.io.internal.read.GenericReaderManager - Successfully found compatible ReaderFactory org.cytoscape.io.internal.read.vizmap.VizmapXMLReaderFactory@100f6364 2022-04-03 18:29:54,858 [Task-Thread-3-Factory-0x4b7635dd] INFO org.cytoscape.application.userlog - Custom Graphics Image property file loaded from: /home/psgendb/CytoscapeConfiguration/images3 2022-04-03 18:29:54,864 [Task-Thread-3-Factory-0x4b7635dd] INFO org.cytoscape.application.userlog - Image loading process finished in 0.009 sec. 2022-04-03 18:29:54,865 [Task-Thread-3-Factory-0x4b7635dd] INFO org.cytoscape.application.userlog - Currently, -1 images are available. 2022-04-03 18:29:55,457 [Task-Thread-3-Factory-0x4b7635dd] INFO org.cytoscape.application.userlog - Image saving process finished in 0.605 sec. 2022-04-03 18:29:56,886 [pool-9-thread-1] INFO org.cytoscape.diffusion.internal.rest.RemoteLogger - No property set for cytoscape.remotelogging.senderaddressservicehostname; setting logger sender address service hostname to: http://35.197.44.209 2022-04-03 18:29:57,261 [pool-84-thread-1] INFO org.cytoscape.rest.internal.CyActivator - Initializing cyREST API server... 2022-04-03 18:29:58,905 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Examining bundle for SPI provider: org.eclipse.jetty.http 2022-04-03 18:29:58,908 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Found SPI resource: bundle://138.0:0/META-INF/services/org.eclipse.jetty.http.HttpFieldPreEncoder 2022-04-03 18:29:58,944 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Loaded SPI provider: class org.eclipse.jetty.http.Http1FieldPreEncoder 2022-04-03 18:29:58,947 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Registered service: org.apache.felix.framework.ServiceRegistrationImpl@20251dea 2022-04-03 18:29:58,947 [pool-84-thread-1] INFO org.apache.aries.spifly.BaseActivator - Registered provider: org.eclipse.jetty.http.HttpFieldPreEncoder in bundle org.eclipse.jetty.http 2022-04-03 18:29:59,899 [pool-84-thread-1] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Command registration delayed for bundle org.apache.karaf.http.core/4.2.8. Missing service: [org.apache.karaf.http.core.ProxyService, org.apache.karaf.http.core.ServletService] 2022-04-03 18:30:00,288 [activator-1-thread-2] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 18:30:00,295 [activator-1-thread-2] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 18:30:00,306 [activator-1-thread-2] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Registering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 18:30:03,129 [pool-84-thread-1] INFO org.cytoscape.rest.internal.task.ResourceManager - ========== Cytoscape RESTful API registered core resources in (973) milliseconds. 2022-04-03 18:30:03,130 [pool-84-thread-1] INFO org.cytoscape.rest.internal.CyActivator - cyREST API Server initialized in 5868msec 2022-04-03 18:30:37,853 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - Start Saving images to: /home/psgendb/CytoscapeConfiguration/images3 2022-04-03 18:30:37,858 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - ========== Image saving process finished ============= 2022-04-03 18:30:37,881 [Task-Thread-3-Factory-0x4b7635dd] INFO org.cytoscape.application.userlog - Image saving process finished in 0.015 sec. 2022-04-03 18:30:37,965 [AWT-EventQueue-0] INFO org.cytoscape.application.userlog - #CiaoBello 2022-04-03 18:30:37,990 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.karaf.shell.core/4.2.8 2022-04-03 18:30:38,008 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.cytoscape.scripting-impl/3.9.1 2022-04-03 18:30:38,016 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.karaf.jaas.blueprint.config/4.2.8 2022-04-03 18:30:38,027 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.aries.blueprint.cm/1.3.1 2022-04-03 18:30:38,039 [FelixShutdown] INFO org.apache.aries.blueprint.container.BlueprintExtender - Destroying container for blueprint bundle org.apache.aries.blueprint.core/1.10.2 2022-04-03 18:30:38,208 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.http.core/4.2.8 2022-04-03 18:30:38,348 [FelixStartLevel] INFO org.apache.aries.spifly.BaseActivator - Unregistered: org.apache.felix.framework.ServiceRegistrationImpl@20251dea 2022-04-03 18:30:38,441 [FelixStartLevel] INFO org.cytoscape.cyndex2.internal.CyActivator - Shutting down CyNDEx-2... 2022-04-03 18:30:38,468 [FelixStartLevel] INFO org.cytoscape.rest.internal.CyActivator - Shutting down REST server... 2022-04-03 18:30:39,978 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.system.core/4.2.8 2022-04-03 18:30:39,992 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.instance.core/4.2.8 2022-04-03 18:30:40,002 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.bundle.core/4.2.8 2022-04-03 18:30:40,004 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.service.core/4.2.8 2022-04-03 18:30:40,005 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.log.core/4.2.8 2022-04-03 18:30:40,007 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.jaas.command/4.2.8 2022-04-03 18:30:40,008 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.diagnostic.core/4.2.8 2022-04-03 18:30:40,009 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.shell.commands/4.2.8 2022-04-03 18:30:40,011 [FelixStartLevel] INFO org.apache.karaf.shell.impl.action.osgi.CommandExtension - Unregistering commands for bundle org.apache.karaf.features.command/4.2.8