BLASTP 2.0.10 [Aug-26-1999]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|1709271|sp|P54929|NIFA_AZOLI NIF-SPECIFIC REGULATORY
PROTEIN.
         (624 letters)

Database: PDB protein sequences
           7378 sequences; 1,543,095 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

No significant similarity found. For reasons why, click here.


  Database: PDB protein sequences
    Posted date:  Dec 29, 1999  5:21 PM
  Number of letters in database: 1,543,095
  Number of sequences in database:  7378
  
Lambda     K      H
   0.320    0.138    0.399 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1512037
Number of Sequences: 7378
Number of extensions: 54573
Number of successful extensions: 81
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 0
length of query: 624
length of database: 1,543,095
effective HSP length: 46
effective length of query: 578
effective length of database: 1,203,707
effective search space: 695742646
effective search space used: 695742646
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)