BLASTX 2.0.10 [Aug-26-1999]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Query= gi|1593528|gb|G29977.1|G29977 human STS SHGC-35896.
         (608 letters)

Database: Non-redundant SwissProt sequences
           82,258 sequences; 29,652,561 total letters


 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Distribution of 12 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P29400|CA54_HUMAN  COLLAGEN ALPHA 5(IV) CHAIN PRECURSOR         31  1.6
sp|Q09455|YQ34_CAEEL  PUTATIVE CUTICLE COLLAGEN C09G5.4            31  2.8
sp|Q07092|CA1F_HUMAN  COLLAGEN ALPHA 1(XVI) CHAIN PRECURSOR        31  2.8
sp|P20631|CC13_CAEEL  CUTICLE COLLAGEN 13 PRECURSOR                31  2.8
sp|P20630|CC12_CAEEL  CUTICLE COLLAGEN 12 PRECURSOR                31  2.8
sp|P34391|YLS6_CAEEL  PUTATIVE CUTICLE COLLAGEN F09G8.6            30  3.7
sp|P17140|CA24_CAEEL  COLLAGEN ALPHA 2(IV) CHAIN PRECURSOR         30  4.8
sp|P39061|CA1H_MOUSE  COLLAGEN ALPHA 1(XVIII) CHAIN PRECURSO...    29  6.3
sp|Q02388|CA17_HUMAN  COLLAGEN ALPHA 1(VII) CHAIN PRECURSOR ...    29  8.3
sp|P13941|CA13_RAT  COLLAGEN ALPHA 1(III) CHAIN                    29  8.3
sp|P02461|CA13_HUMAN  COLLAGEN ALPHA 1(III) CHAIN PRECURSOR        29  8.3


 sp|P29400|CA54_HUMAN COLLAGEN ALPHA 5(IV) CHAIN PRECURSOR
            Length = 1685
            
 Score = 31.3 bits (69), Expect = 1.6
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +1

Query: 460  PQNKGEVSKXSXGRPXIPGKGGXNXXGXPQGKXGXXGAPXGP 585
            P  +  + K   G P IPG+ G      PQG  G  G P GP
Sbjct: 1364 PSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPG-PTGP 1404





 sp|Q09455|YQ34_CAEEL PUTATIVE CUTICLE COLLAGEN C09G5.4
           Length = 323
           
 Score = 30.5 bits (67), Expect = 2.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 496 GRPXIPGKGGXNXXGXPQGKXGXXGAP 576
           G+P  PG+GG      P+G  G  GAP
Sbjct: 156 GQPGHPGQGGSQGPAGPRGPAGDAGAP 182





 sp|Q07092|CA1F_HUMAN COLLAGEN ALPHA 1(XVI) CHAIN PRECURSOR
           Length = 1603
           
 Score = 30.5 bits (67), Expect = 2.8
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = +1

Query: 460 PQNKGEVSKXSXGRPXIPGKGGXNXXGXPQGKXGXXGAPXGP 585
           P  KGE      GRP  PG+ G      P G  G  G P  P
Sbjct: 743 PGPKGEQGPEGVGRPGKPGQPGLPGVQGPPGLKGVQGEPGPP 784





 sp|P20631|CC13_CAEEL CUTICLE COLLAGEN 13 PRECURSOR
           Length = 316
           
 Score = 30.5 bits (67), Expect = 2.8
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +1

Query: 481 SKXSXGRPXIPGKGGXNXXGXP--QGKXGXXGAPXGPXXXXXP 603
           S    G P  PG+ G +  G P  QG  G  GAP  P     P
Sbjct: 250 SPGPAGAPGQPGQAGSSQPGGPGPQGDAGAPGAPGAPGQAGAP 292





 sp|P20630|CC12_CAEEL CUTICLE COLLAGEN 12 PRECURSOR
           Length = 316
           
 Score = 30.5 bits (67), Expect = 2.8
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +1

Query: 481 SKXSXGRPXIPGKGGXNXXGXP--QGKXGXXGAPXGPXXXXXP 603
           S    G P  PG+ G +  G P  QG  G  GAP  P     P
Sbjct: 250 SPGPAGAPGQPGQAGSSQPGGPGPQGDAGAPGAPGAPGQAGAP 292





 sp|P34391|YLS6_CAEEL PUTATIVE CUTICLE COLLAGEN F09G8.6
           Length = 278
           
 Score = 30.1 bits (66), Expect = 3.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 496 GRPXIPGKGGXNXXGXPQGKXGXXGAPXGP 585
           G+P   G+GG      P+G  G  GAP  P
Sbjct: 155 GQPGADGQGGAPGPAGPEGPAGDAGAPGAP 184





 sp|P17140|CA24_CAEEL COLLAGEN ALPHA 2(IV) CHAIN PRECURSOR
            Length = 1758
            
 Score = 29.7 bits (65), Expect = 4.8
 Identities = 19/48 (39%), Positives = 21/48 (43%)
 Frame = +1

Query: 460  PQNKGEVSKXSXGRPXIPGKGGXNXXGXPQGKXGXXGAPXGPXXXXXP 603
            P  KGE      G+P  PG+ G    G P GK G  GAP  P     P
Sbjct: 1059 PGFKGETGLPGYGQPGQPGEKG--LPGIP-GKAGRQGAPGSPGQDGLP 1103





 Score = 29.7 bits (65), Expect = 4.8
 Identities = 18/42 (42%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
 Frame = +1

Query: 460 PQNKGEVSKXSXGRPXIPG-KGGXNXXGXPQGKXGXXGAPXGP 585
           P NKGE      G+P  PG KG     G P G  G  G P  P
Sbjct: 675 PGNKGEAGYGQPGQPGFPGAKGDGGLPGLP-GTPGLQGMPGEP 716





 sp|P39061|CA1H_MOUSE COLLAGEN ALPHA 1(XVIII) CHAIN PRECURSOR [CONTAINS: ENDOSTATIN]
           Length = 1315
           
 Score = 29.3 bits (64), Expect = 6.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 496 GRPXIPGKGGXNXXGXPQGKXGXXGAPXGP 585
           GRP +PG+ G      P+G  G  G P  P
Sbjct: 842 GRPGLPGQQGVQGPSGPKGDKGEVGPPGPP 871





 sp|Q02388|CA17_HUMAN COLLAGEN ALPHA 1(VII) CHAIN PRECURSOR (LONG-CHAIN COLLAGEN) (LC
            COLLAGEN)
            Length = 2944
            
 Score = 29.0 bits (63), Expect = 8.3
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +1

Query: 460  PQNKGEVSKXSXGRPXIPGKGGXNXXGXPQGKXGXXG 570
            P  KGE      G P +PG+ G      P+G  G  G
Sbjct: 1441 PGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIG 1477





 sp|P13941|CA13_RAT COLLAGEN ALPHA 1(III) CHAIN
           Length = 636
           
 Score = 29.0 bits (63), Expect = 8.3
 Identities = 17/48 (35%), Positives = 18/48 (37%)
 Frame = +1

Query: 460 PQNKGEVSKXSXGRPXIPGKGGXNXXGXPQGKXGXXGAPXGPXXXXXP 603
           P  KGE        P  PG  G      PQG  G  G+P GP     P
Sbjct: 2   PGEKGEGGPPGAAGP--PGGSGPAGPPGPQGVKGERGSPGGPGAAGFP 47





 sp|P02461|CA13_HUMAN COLLAGEN ALPHA 1(III) CHAIN PRECURSOR
           Length = 1466
           
 Score = 29.0 bits (63), Expect = 8.3
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +1

Query: 490 SXGRPXIPGKGGXNXXGXPQGKXGXXGAPXGP 585
           S G P  PG  G      P G  G  GAP  P
Sbjct: 886 SNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSP 917






  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 28, 1999  4:33 PM
  Number of letters in database: 29,652,561
  Number of sequences in database:  82,258
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27301044
Number of Sequences: 82258
Number of extensions: 501818
Number of successful extensions: 2382
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2052
Number of HSP's gapped (non-prelim): 298
length of query: 202
length of database: 29,652,561
effective HSP length: 50
effective length of query: 152
effective length of database: 25,539,661
effective search space: 3882028472
effective search space used: 3882028472
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 62 (28.6 bits)