/usr/bin/c++    -Wall -Wextra -Wunused -Wno-long-long -Wsign-compare -Wpointer-arith -Wno-unused-parameter  -pedantic  -O2 -g   CMakeFiles/sortedToBam.dir/sortedToBam.cpp.o  -o sortedToBam -rdynamic ../../../lib/starling/libcasava_starling.a ../../../lib/blt_util/libcasava_blt_util.a ../../../lib/common/libcasava_common.a ../../../../opt/bootstrap/lib/libboost_date_time.a ../../../../opt/bootstrap/lib/libboost_filesystem.a ../../../../opt/bootstrap/lib/libboost_iostreams.a ../../../../opt/bootstrap/lib/libboost_program_options.a ../../../../opt/bootstrap/lib/libboost_regex.a ../../../../opt/bootstrap/lib/libboost_serialization.a ../../../../opt/bootstrap/lib/libboost_system.a ../../../../opt/bootstrap/lib/libboost_thread.a ../../../../opt/samtools-0.1.8/libbam.a -lz -lbz2 -lpthread