Barcode-Lane Summary Information For Experiment (Demo)
Project Summary
Project Name | Demo |
Machine | HWI-BRUNOP20X |
Run Folder | 110120_P20_0993_A805CKABXX |
Flow Cell ID | A805CKABXX |
Platform | |
Control Software | SCS |
Primary Analysis | RTA 1.10.36.0 |
Secondary Analysis | CASAVA-1.8.2 |
Project Results Summary
Clusters (Raw) | Clusters(PF) | Yield (MBases) |
---|---|---|
1,567,312 | 1,567,312 | 235 |
Barcode-Lane summary
Barcode-Lane | Sample | Barcode | Lane | Species | Analysis Type | Length | Num Tiles | Genome Directory |
---|
AR008_ACTTGA_L1 | AR008 | ACTTGA | 1 | human | eland rna | 75 75 | 1 | /illumina/development/casava/Version_1_8_branch/share/CASAVA-1.8.2/examples/iGenomes/Homo_sapiens/UCSC/hg18/Sequence/Chromosomes/chr22.fa |
PhiX_TTAGGC_L1 | PhiX | TTAGGC | 1 | phix | eland pair | 75 75 | 1 | /illumina/development/casava/Version_1_8_branch/share/CASAVA-1.8.2/examples/iGenomes/PhiX/NCBI/1993-04-28/Sequence/Chromosomes/phix.fa |
Barcode-Lane Results Summary : Read 1
Barcode-Lane Info | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Barcode lane | Barcode lane Yield (Mbases) | Clusters (raw) | Clusters (PF) | 1st Cycle Int (PF) | % intensity after 20 cycles (PF) | % PF Clusters | % Align (PF) | Alignment Score (PF) | % Mismatch Rate (PF) | % >=Q30 bases (PF) | Mean Quality SCore (PF) |
AR008_ACTTGA_L1 | 114 | 1,518,208 | 1,518,208 | 472 +/-0 | 98.55 +/-0 | 100.00 | 4.15 | 10.15 | 3.51 | 90.95 | 35.59 |
PhiX_TTAGGC_L1 | 4 | 49,104 | 49,104 | 472 +/-0 | 98.55 +/-0 | 100.00 | 94.26 | 379.07 | 0.29 | 92.90 | 36.15 |
Barcode-Lane Results Summary : Read 2
Barcode-Lane Info | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Barcode lane | Barcode lane Yield (Mbases) | Clusters (raw) | Clusters (PF) | 1st Cycle Int (PF) | % intensity after 20 cycles (PF) | % PF Clusters | % Align (PF) | Alignment Score (PF) | % Mismatch Rate (PF) | % >=Q30 bases (PF) | Mean Quality SCore (PF) |
AR008_ACTTGA_L1 | 114 | 1,518,208 | 1,518,208 | 329 +/-0 | 83.72 +/-0 | 100.00 | 4.03 | 9.61 | 4.00 | 82.93 | 33.29 |
PhiX_TTAGGC_L1 | 4 | 49,104 | 49,104 | 329 +/-0 | 83.72 +/-0 | 100.00 | 93.38 | 368.98 | 0.58 | 86.36 | 34.37 |
Expanded Barcode-Lane Summary : Read 1
Barcode lane Info | Phasing Info | Raw data | Filtered data | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Barcode lane | Clusters (raw) | % Phasing | % Prephasing | % Mismatch Rate (raw) | % PF Clusters | Cycle 2-4 Av Int (PF) | Cycle 2-10 Av % Loss (PF) | Cycle 10-20 Av % Loss (PF) | % Align (PF) | % Mismatch Rate (PF) | % >=Q30 bases (PF) | Mean Quality SCore (PF) |
AR008_ACTTGA_L1 | 1,518,208 | 0.18 | 0.25 | 3.51 | 100.00 | 579.66 +/-0.00 | 2.35 +/-0.00 | 0.91 +/-0.00 | 4.15 | 3.51 | 90.95 | 35.59 |
PhiX_TTAGGC_L1 | 49,104 | 0.18 | 0.25 | 0.29 | 100.00 | 579.66 +/-0.00 | 2.35 +/-0.00 | 0.91 +/-0.00 | 94.26 | 0.29 | 92.90 | 36.15 |
Expanded Barcode-Lane Summary : Read 2
Barcode lane Info | Phasing Info | Raw data | Filtered data | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Barcode lane | Clusters (raw) | % Phasing | % Prephasing | % Mismatch Rate (raw) | % PF Clusters | Cycle 2-4 Av Int (PF) | Cycle 2-10 Av % Loss (PF) | Cycle 10-20 Av % Loss (PF) | % Align (PF) | % Mismatch Rate (PF) | % >=Q30 bases (PF) | Mean Quality SCore (PF) |
AR008_ACTTGA_L1 | 1,518,208 | 0.13 | 0.22 | 4.00 | 100.00 | 311.45 +/-0.00 | 2.35 +/-0.00 | 0.91 +/-0.00 | 4.03 | 4.00 | 82.93 | 33.29 |
PhiX_TTAGGC_L1 | 49,104 | 0.13 | 0.22 | 0.58 | 100.00 | 311.45 +/-0.00 | 2.35 +/-0.00 | 0.91 +/-0.00 | 93.38 | 0.58 | 86.36 | 34.37 |
IVC Plots
click hereAll Intensity Plots
click hereMismatch Graphs
click hereMismatch Curves
click hereAdditional Paired Statistics
Barcode-Lane Info | Relative Orientation Statistics | Insert Size Statistics (for relative orientation R+) | Insert Statistics (% of individually uniquely alignable pairs) | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Barcode-Lane | F-: >R2 R1> |
F+: >R1 R2> |
R-: <R2 R1> |
R+: >R1 R2< |
Total | Median | Below-median SD | Above-median SD | Low thresh. | High thresh. | Too small | Too large | Orientation and size OK |
PhiX_TTAGGC_L1 | 13 (0.03%) |
8 (0.02%) |
993 (2.16%) |
44,862 (97.79%) |
45,876 | 196 | 26 | 31 | 84 | 272 | 58 (0.13%) |
62 (0.14%) |
44,742 (97.53%) |
CASAVA-1.8.2