This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by EMBOSS configure 6.4.0, which was generated by GNU Autoconf 2.68. Invocation command line was $ ./configure --prefix=/home/psgendb/local/pkg/EMBOSS-6.4.0/solaris-sparc ## --------- ## ## Platform. ## ## --------- ## hostname = antares uname -m = sun4u uname -r = 5.10 uname -s = SunOS uname -v = Generic_139555-08 /usr/bin/uname -p = sparc /bin/uname -X = System = SunOS Node = antares Release = 5.10 KernelID = Generic_139555-08 Machine = sun4u BusType = Serial = Users = OEM# = 0 Origin# = 1 NumCPU = 4 /bin/arch = sun4 /usr/bin/arch -k = sun4u /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /home/psgendb/zhangju/MeV_4_6_1/R-2.9.1/bin PATH: /home/psgendb/local/pkg/454/bin PATH: /home/u4/zhangju/bin PATH: /home/psgendb/local/script PATH: /home/psgendb/local/bin-solaris-sparc PATH: /usr/sfw/bin PATH: /opt/SUNWspro/bin PATH: /usr/bin PATH: /usr/local/bin PATH: /opt/csw/bin PATH: /usr/ccs/bin PATH: /usr/local/adminsys/bin PATH: /usr/local/sybase/client/bin PATH: /usr/X11/bin PATH: /usr/dt/bin PATH: /usr/openwin/bin PATH: /usr/openwin/demo PATH: /home/psgendb/script PATH: /home/psgendb/bin-solaris-sparc PATH: /home/psgendb/local/pkg/EMBOSS/solaris-sparc/bin PATH: /home/psgendb/local/pkg/ncbi-blast-2.2.25+/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2522: checking for gawk configure:2538: found /opt/csw/bin/gawk configure:2549: result: gawk configure:2614: checking for icc configure:2644: result: no configure:2614: checking for gcc configure:2630: found /usr/sfw/bin/gcc configure:2641: result: gcc configure:2672: checking for C compiler version configure:2681: gcc --version >&5 gcc (GCC) 3.4.3 (csl-sol210-3_4-branch+sol_rpath) Copyright (C) 2004 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:2692: $? = 0 configure:2681: gcc -v >&5 Reading specs from /usr/sfw/lib/gcc/sparc-sun-solaris2.10/3.4.3/specs Configured with: /sfw10/builds/build/sfw10-patch/usr/src/cmd/gcc/gcc-3.4.3/configure --prefix=/usr/sfw --with-as=/usr/ccs/bin/as --without-gnu-as --with-ld=/usr/ccs/bin/ld --without-gnu-ld --enable-languages=c,c++ --enable-shared Thread model: posix gcc version 3.4.3 (csl-sol210-3_4-branch+sol_rpath) configure:2692: $? = 0 configure:2681: gcc -V >&5 gcc: `-V' option must have argument configure:2692: $? = 1 configure:2681: gcc -qversion >&5 gcc: unrecognized option `-qversion' gcc: no input files configure:2692: $? = 1 configure:2712: checking whether the C compiler works configure:2734: gcc conftest.c >&5 configure:2738: $? = 0 configure:2786: result: yes configure:2789: checking for C compiler default output file name configure:2791: result: a.out configure:2797: checking for suffix of executables configure:2804: gcc -o conftest conftest.c >&5 configure:2808: $? = 0 configure:2830: result: configure:2852: checking whether we are cross compiling configure:2860: gcc -o conftest conftest.c >&5 configure:2864: $? = 0 configure:2871: ./conftest configure:2875: $? = 0 configure:2890: result: no configure:2895: checking for suffix of object files configure:2917: gcc -c conftest.c >&5 configure:2921: $? = 0 configure:2942: result: o configure:2946: checking whether we are using the GNU C compiler configure:2965: gcc -c conftest.c >&5 configure:2965: $? = 0 configure:2974: result: yes configure:2983: checking whether gcc accepts -g configure:3003: gcc -c -g conftest.c >&5 configure:3003: $? = 0 configure:3044: result: yes configure:3061: checking for gcc option to accept ISO C89 configure:3125: gcc -c conftest.c >&5 configure:3125: $? = 0 configure:3138: result: none needed configure:3216: checking for icpc configure:3246: result: no configure:3216: checking for g++ configure:3232: found /usr/sfw/bin/g++ configure:3243: result: g++ configure:3270: checking for C++ compiler version configure:3279: g++ --version >&5 g++ (GCC) 3.4.3 (csl-sol210-3_4-branch+sol_rpath) Copyright (C) 2004 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3290: $? = 0 configure:3279: g++ -v >&5 Reading specs from /usr/sfw/lib/gcc/sparc-sun-solaris2.10/3.4.3/specs Configured with: /sfw10/builds/build/sfw10-patch/usr/src/cmd/gcc/gcc-3.4.3/configure --prefix=/usr/sfw --with-as=/usr/ccs/bin/as --without-gnu-as --with-ld=/usr/ccs/bin/ld --without-gnu-ld --enable-languages=c,c++ --enable-shared Thread model: posix gcc version 3.4.3 (csl-sol210-3_4-branch+sol_rpath) configure:3290: $? = 0 configure:3279: g++ -V >&5 g++: `-V' option must have argument configure:3290: $? = 1 configure:3279: g++ -qversion >&5 g++: unrecognized option `-qversion' g++: no input files configure:3290: $? = 1 configure:3294: checking whether we are using the GNU C++ compiler configure:3313: g++ -c conftest.cpp >&5 configure:3313: $? = 0 configure:3322: result: yes configure:3331: checking whether g++ accepts -g configure:3351: g++ -c -g conftest.cpp >&5 configure:3351: $? = 0 configure:3392: result: yes configure:3420: checking how to run the C preprocessor configure:3451: gcc -E conftest.c configure:3451: $? = 0 configure:3465: gcc -E conftest.c conftest.c:9:28: ac_nonexistent.h: No such file or directory configure:3465: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "EMBOSS" | #define PACKAGE_TARNAME "EMBOSS" | #define PACKAGE_VERSION "6.4.0" | #define PACKAGE_STRING "EMBOSS 6.4.0" | #define PACKAGE_BUGREPORT "emboss-bug@emboss.open-bio.org" | #define PACKAGE_URL "http://emboss.sourceforge.net/" | /* end confdefs.h. */ | #include configure:3490: result: gcc -E configure:3510: gcc -E conftest.c configure:3510: $? = 0 configure:3524: gcc -E conftest.c conftest.c:9:28: ac_nonexistent.h: No such file or directory configure:3524: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "EMBOSS" | #define PACKAGE_TARNAME "EMBOSS" | #define PACKAGE_VERSION "6.4.0" | #define PACKAGE_STRING "EMBOSS 6.4.0" | #define PACKAGE_BUGREPORT "emboss-bug@emboss.open-bio.org" | #define PACKAGE_URL "http://emboss.sourceforge.net/" | /* end confdefs.h. */ | #include configure:3595: checking for a BSD-compatible install configure:3663: result: /opt/csw/bin/ginstall -c configure:3674: checking whether ln -s works configure:3678: result: yes configure:3685: checking whether make sets $(MAKE) configure:3707: result: yes configure:3716: checking for a thread-safe mkdir -p configure:3755: result: /opt/csw/bin/gmkdir -p configure:3761: checking whether build environment is sane configure:3811: result: yes configure:3979: checking for style of include used by make configure:4007: result: GNU configure:4092: checking dependency style of gcc configure:4202: result: gcc3 configure:4219: checking dependency style of g++ configure:4329: result: gcc3 configure:4376: checking build system type configure:4390: result: sparc-sun-solaris2.10 configure:4410: checking host system type configure:4423: result: sparc-sun-solaris2.10 configure:4464: checking how to print strings configure:4491: result: printf configure:4512: checking for a sed that does not truncate output configure:4576: result: /opt/csw/bin/gsed configure:4594: checking for grep that handles long lines and -e configure:4652: result: /usr/sfw/bin/ggrep configure:4657: checking for egrep configure:4719: result: /usr/sfw/bin/ggrep -E configure:4724: checking for fgrep configure:4786: result: /usr/sfw/bin/ggrep -F configure:4821: checking for ld used by gcc configure:4888: result: /usr/ccs/bin/ld configure:4895: checking if the linker (/usr/ccs/bin/ld) is GNU ld configure:4910: result: no configure:4922: checking for BSD- or MS-compatible name lister (nm) configure:4971: result: /usr/ccs/bin/nm -p configure:5101: checking the name lister (/usr/ccs/bin/nm -p) interface configure:5108: gcc -c conftest.c >&5 configure:5111: /usr/ccs/bin/nm -p "conftest.o" configure:5114: output conftest.o: 0000000000 b 0000000000 f conftest.c 0000000000 B some_variable configure:5121: result: BSD nm configure:5125: checking the maximum length of command line arguments configure:5250: result: 786240 configure:5267: checking whether the shell understands some XSI constructs configure:5277: result: yes configure:5281: checking whether the shell understands "+=" configure:5287: result: no configure:5322: checking how to convert sparc-sun-solaris2.10 file names to sparc-sun-solaris2.10 format configure:5362: result: func_convert_file_noop configure:5369: checking how to convert sparc-sun-solaris2.10 file names to toolchain format configure:5389: result: func_convert_file_noop configure:5396: checking for /usr/ccs/bin/ld option to reload object files configure:5403: result: -r configure:5477: checking for objdump configure:5507: result: no configure:5536: checking how to recognize dependent libraries configure:5738: result: pass_all configure:5823: checking for dlltool configure:5853: result: no configure:5883: checking how to associate runtime and link libraries configure:5910: result: printf %s\n configure:5971: checking for ar configure:5987: found /usr/ccs/bin/ar configure:5998: result: ar configure:6035: checking for archiver @FILE support configure:6052: gcc -c conftest.c >&5 configure:6052: $? = 0 configure:6055: ar cru libconftest.a @conftest.lst >&5 ar: cannot open @conftest.lst No such file or directory ar: @conftest.lst not found configure:6058: $? = 1 configure:6078: result: no configure:6136: checking for strip configure:6152: found /usr/ccs/bin/strip configure:6163: result: strip configure:6235: checking for ranlib configure:6251: found /usr/ccs/bin/ranlib configure:6262: result: ranlib configure:6364: checking command to parse /usr/ccs/bin/nm -p output from gcc object configure:6483: gcc -c conftest.c >&5 configure:6486: $? = 0 configure:6490: /usr/ccs/bin/nm -p conftest.o \| sed -n -e 's/^.*[ ]\([BDRT][BDRT]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:6493: $? = 0 configure:6559: gcc -o conftest conftest.c conftstm.o >&5 configure:6562: $? = 0 configure:6600: result: ok configure:6637: checking for sysroot configure:6667: result: no configure:6843: gcc -c conftest.c >&5 configure:6846: $? = 0 configure:6910: checking for mt configure:6926: found /usr/bin/mt configure:6937: result: mt configure:6960: checking if mt is a manifest tool configure:6966: mt '-?' mt: unknown command: -? configure:6974: result: no configure:7602: checking for ANSI C header files configure:7622: gcc -c conftest.c >&5 configure:7622: $? = 0 configure:7695: gcc -o conftest conftest.c >&5 configure:7695: $? = 0 configure:7695: ./conftest configure:7695: $? = 0 configure:7706: result: yes configure:7719: checking for sys/types.h configure:7719: gcc -c conftest.c >&5 configure:7719: $? = 0 configure:7719: result: yes configure:7719: checking for sys/stat.h configure:7719: gcc -c conftest.c >&5 configure:7719: $? = 0 configure:7719: result: yes configure:7719: checking for stdlib.h configure:7719: gcc -c conftest.c >&5 configure:7719: $? = 0 configure:7719: result: yes configure:7719: checking for string.h configure:7719: gcc -c conftest.c >&5 configure:7719: $? = 0 configure:7719: result: yes configure:7719: checking for memory.h configure:7719: gcc -c conftest.c >&5 configure:7719: $? = 0 configure:7719: result: yes configure:7719: checking for strings.h configure:7719: gcc -c conftest.c >&5 configure:7719: $? = 0 configure:7719: result: yes configure:7719: checking for inttypes.h configure:7719: gcc -c conftest.c >&5 configure:7719: $? = 0 configure:7719: result: yes configure:7719: checking for stdint.h configure:7719: gcc -c conftest.c >&5 configure:7719: $? = 0 configure:7719: result: yes configure:7719: checking for unistd.h configure:7719: gcc -c conftest.c >&5 configure:7719: $? = 0 configure:7719: result: yes configure:7733: checking for dlfcn.h configure:7733: gcc -c conftest.c >&5 configure:7733: $? = 0 configure:7733: result: yes configure:7931: checking for objdir configure:7946: result: .libs configure:8217: checking if gcc supports -fno-rtti -fno-exceptions configure:8235: gcc -c -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C configure:8239: $? = 0 configure:8252: result: no configure:8562: checking for gcc option to produce PIC configure:8569: result: -fPIC -DPIC configure:8577: checking if gcc PIC flag -fPIC -DPIC works configure:8595: gcc -c -fPIC -DPIC -DPIC conftest.c >&5 configure:8599: $? = 0 configure:8612: result: yes configure:8641: checking if gcc static flag -static works configure:8669: result: no configure:8684: checking if gcc supports -c -o file.o configure:8705: gcc -c -o out/conftest2.o conftest.c >&5 configure:8709: $? = 0 configure:8731: result: yes configure:8739: checking if gcc supports -c -o file.o configure:8786: result: yes configure:8819: checking whether the gcc linker (/usr/ccs/bin/ld) supports shared libraries configure:9977: result: yes configure:10014: checking whether -lc should be explicitly linked in configure:10022: gcc -c conftest.c >&5 configure:10025: $? = 0 configure:10040: gcc -shared -fPIC -DPIC -Wl,-z -Wl,text -Wl,-h -Wl,conftest -o conftest conftest.o -v 2\>\&1 \| /usr/sfw/bin/ggrep -lc \>/dev/null 2\>\&1 configure:10043: $? = 1 configure:10057: result: yes configure:10222: checking dynamic linker characteristics configure:10962: result: solaris2.10 ld.so configure:11069: checking how to hardcode library paths into programs configure:11094: result: immediate configure:11634: checking whether stripping libraries is possible configure:11656: result: no configure:11674: checking if libtool supports shared libraries configure:11676: result: yes configure:11679: checking whether to build shared libraries configure:11700: result: yes configure:11703: checking whether to build static libraries configure:11707: result: yes configure:11730: checking how to run the C++ preprocessor configure:11757: g++ -E conftest.cpp configure:11757: $? = 0 configure:11771: g++ -E conftest.cpp conftest.cpp:23:28: ac_nonexistent.h: No such file or directory configure:11771: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "EMBOSS" | #define PACKAGE_TARNAME "EMBOSS" | #define PACKAGE_VERSION "6.4.0" | #define PACKAGE_STRING "EMBOSS 6.4.0" | #define PACKAGE_BUGREPORT "emboss-bug@emboss.open-bio.org" | #define PACKAGE_URL "http://emboss.sourceforge.net/" | #define PACKAGE "EMBOSS" | #define VERSION "6.4.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:11796: result: g++ -E configure:11816: g++ -E conftest.cpp configure:11816: $? = 0 configure:11830: g++ -E conftest.cpp conftest.cpp:23:28: ac_nonexistent.h: No such file or directory configure:11830: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "EMBOSS" | #define PACKAGE_TARNAME "EMBOSS" | #define PACKAGE_VERSION "6.4.0" | #define PACKAGE_STRING "EMBOSS 6.4.0" | #define PACKAGE_BUGREPORT "emboss-bug@emboss.open-bio.org" | #define PACKAGE_URL "http://emboss.sourceforge.net/" | #define PACKAGE "EMBOSS" | #define VERSION "6.4.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:12000: checking for ld used by g++ configure:12067: result: /usr/ccs/bin/ld configure:12074: checking if the linker (/usr/ccs/bin/ld) is GNU ld configure:12089: result: no configure:12144: checking whether the g++ linker (/usr/ccs/bin/ld) supports shared libraries configure:13148: result: yes configure:13183: g++ -c -g -O2 conftest.cpp >&5 configure:13186: $? = 0 configure:13706: checking for g++ option to produce PIC configure:13713: result: -fPIC -DPIC configure:13721: checking if g++ PIC flag -fPIC -DPIC works configure:13739: g++ -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5 configure:13743: $? = 0 configure:13756: result: yes configure:13779: checking if g++ static flag -static works configure:13807: result: no configure:13819: checking if g++ supports -c -o file.o configure:13840: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5 configure:13844: $? = 0 configure:13866: result: yes configure:13871: checking if g++ supports -c -o file.o configure:13918: result: yes configure:13948: checking whether the g++ linker (/usr/ccs/bin/ld) supports shared libraries configure:13982: result: yes configure:14125: checking dynamic linker characteristics configure:14799: result: solaris2.10 ld.so configure:14852: checking how to hardcode library paths into programs configure:14877: result: immediate configure:15483: checking for X configure:15672: result: libraries /usr/openwin/lib, headers /usr/openwin/include configure:15692: checking whether -R must be followed by a space configure:15708: gcc -o conftest -O2 -D__EXTENSIONS__ conftest.c -R/usr/openwin/lib >&5 configure:15708: $? = 0 configure:15709: result: no configure:15771: gcc -o conftest -O2 -D__EXTENSIONS__ conftest.c -L/usr/openwin/lib -R/usr/openwin/lib -lX11 >&5 configure:15771: $? = 0 configure:15869: checking for gethostbyname configure:15869: gcc -o conftest -O2 -D__EXTENSIONS__ conftest.c >&5 Undefined first referenced symbol in file gethostbyname /var/tmp//cczKUlGl.o ld: fatal: Symbol referencing errors. No output written to conftest collect2: ld returned 1 exit status configure:15869: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "EMBOSS" | #define PACKAGE_TARNAME "EMBOSS" | #define PACKAGE_VERSION "6.4.0" | #define PACKAGE_STRING "EMBOSS 6.4.0" | #define PACKAGE_BUGREPORT "emboss-bug@emboss.open-bio.org" | #define PACKAGE_URL "http://emboss.sourceforge.net/" | #define PACKAGE "EMBOSS" | #define VERSION "6.4.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | /* Define gethostbyname to an innocuous variant, in case declares gethostbyname. | For example, HP-UX 11i declares gettimeofday. */ | #define gethostbyname innocuous_gethostbyname | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char gethostbyname (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef gethostbyname | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char gethostbyname (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_gethostbyname || defined __stub___gethostbyname | choke me | #endif | | int | main () | { | return gethostbyname (); | ; | return 0; | } configure:15869: result: no configure:15875: checking for gethostbyname in -lnsl configure:15900: gcc -o conftest -O2 -D__EXTENSIONS__ conftest.c -lnsl >&5 configure:15900: $? = 0 configure:15909: result: yes configure:15966: checking for connect configure:15966: gcc -o conftest -O2 -D__EXTENSIONS__ conftest.c >&5 Undefined first referenced symbol in file connect /var/tmp//ccmSjFih.o ld: fatal: Symbol referencing errors. No output written to conftest collect2: ld returned 1 exit status configure:15966: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "EMBOSS" | #define PACKAGE_TARNAME "EMBOSS" | #define PACKAGE_VERSION "6.4.0" | #define PACKAGE_STRING "EMBOSS 6.4.0" | #define PACKAGE_BUGREPORT "emboss-bug@emboss.open-bio.org" | #define PACKAGE_URL "http://emboss.sourceforge.net/" | #define PACKAGE "EMBOSS" | #define VERSION "6.4.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | /* Define connect to an innocuous variant, in case declares connect. | For example, HP-UX 11i declares gettimeofday. */ | #define connect innocuous_connect | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char connect (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef connect | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char connect (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_connect || defined __stub___connect | choke me | #endif | | int | main () | { | return connect (); | ; | return 0; | } configure:15966: result: no configure:15972: checking for connect in -lsocket configure:15997: gcc -o conftest -O2 -D__EXTENSIONS__ conftest.c -lsocket -lnsl >&5 configure:15997: $? = 0 configure:16006: result: yes configure:16015: checking for remove configure:16015: gcc -o conftest -O2 -D__EXTENSIONS__ conftest.c >&5 configure:16015: $? = 0 configure:16015: result: yes configure:16064: checking for shmat configure:16064: gcc -o conftest -O2 -D__EXTENSIONS__ conftest.c >&5 configure:16064: $? = 0 configure:16064: result: yes configure:16122: checking for IceConnectionNumber in -lICE configure:16147: gcc -o conftest -O2 -D__EXTENSIONS__ -L/usr/openwin/lib conftest.c -lICE -lsocket -lnsl >&5 configure:16147: $? = 0 configure:16156: result: yes configure:16169: checking for dirent.h that defines DIR configure:16188: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5 configure:16188: $? = 0 configure:16196: result: yes configure:16209: checking for library containing opendir configure:16240: gcc -o conftest -O2 -D__EXTENSIONS__ conftest.c >&5 configure:16240: $? = 0 configure:16257: result: none required configure:16324: checking for ANSI C header files configure:16428: result: yes configure:16440: checking for unistd.h configure:16440: result: yes configure:16440: checking TargetConfig.h usability configure:16440: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5 conftest.c:59:26: TargetConfig.h: No such file or directory configure:16440: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "EMBOSS" | #define PACKAGE_TARNAME "EMBOSS" | #define PACKAGE_VERSION "6.4.0" | #define PACKAGE_STRING "EMBOSS 6.4.0" | #define PACKAGE_BUGREPORT "emboss-bug@emboss.open-bio.org" | #define PACKAGE_URL "http://emboss.sourceforge.net/" | #define PACKAGE "EMBOSS" | #define VERSION "6.4.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:16440: result: no configure:16440: checking TargetConfig.h presence configure:16440: gcc -E conftest.c conftest.c:26:26: TargetConfig.h: No such file or directory configure:16440: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "EMBOSS" | #define PACKAGE_TARNAME "EMBOSS" | #define PACKAGE_VERSION "6.4.0" | #define PACKAGE_STRING "EMBOSS 6.4.0" | #define PACKAGE_BUGREPORT "emboss-bug@emboss.open-bio.org" | #define PACKAGE_URL "http://emboss.sourceforge.net/" | #define PACKAGE "EMBOSS" | #define VERSION "6.4.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include configure:16440: result: no configure:16440: checking for TargetConfig.h configure:16440: result: no configure:16452: checking whether byte ordering is bigendian configure:16467: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5 conftest.c:27: error: syntax error before "a" conftest.c:29: error: syntax error before "typedef" configure:16467: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "EMBOSS" | #define PACKAGE_TARNAME "EMBOSS" | #define PACKAGE_VERSION "6.4.0" | #define PACKAGE_STRING "EMBOSS 6.4.0" | #define PACKAGE_BUGREPORT "emboss-bug@emboss.open-bio.org" | #define PACKAGE_URL "http://emboss.sourceforge.net/" | #define PACKAGE "EMBOSS" | #define VERSION "6.4.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #ifndef __APPLE_CC__ | not a universal capable compiler | #endif | typedef int dummy; | configure:16512: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5 conftest.c: In function `main': conftest.c:33: error: `bogus' undeclared (first use in this function) conftest.c:33: error: (Each undeclared identifier is reported only once conftest.c:33: error: for each function it appears in.) conftest.c:33: error: syntax error before "endian" configure:16512: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "EMBOSS" | #define PACKAGE_TARNAME "EMBOSS" | #define PACKAGE_VERSION "6.4.0" | #define PACKAGE_STRING "EMBOSS 6.4.0" | #define PACKAGE_BUGREPORT "emboss-bug@emboss.open-bio.org" | #define PACKAGE_URL "http://emboss.sourceforge.net/" | #define PACKAGE "EMBOSS" | #define VERSION "6.4.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include | #include | | int | main () | { | #if ! (defined BYTE_ORDER && defined BIG_ENDIAN && defined LITTLE_ENDIAN && BYTE_ORDER && BIG_ENDIAN && LITTLE_ENDIAN) | bogus endian macros | #endif | | ; | return 0; | } configure:16556: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5 configure:16556: $? = 0 configure:16573: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5 configure:16573: $? = 0 configure:16658: result: yes configure:16676: checking for an ANSI C-conforming const configure:16741: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5 configure:16741: $? = 0 configure:16748: result: yes configure:16756: checking for inline configure:16772: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5 configure:16772: $? = 0 configure:16780: result: inline configure:16798: checking for pid_t configure:16798: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5 configure:16798: $? = 0 configure:16798: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5 conftest.c: In function `main': conftest.c:63: error: syntax error before ')' token configure:16798: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "EMBOSS" | #define PACKAGE_TARNAME "EMBOSS" | #define PACKAGE_VERSION "6.4.0" | #define PACKAGE_STRING "EMBOSS 6.4.0" | #define PACKAGE_BUGREPORT "emboss-bug@emboss.open-bio.org" | #define PACKAGE_URL "http://emboss.sourceforge.net/" | #define PACKAGE "EMBOSS" | #define VERSION "6.4.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_UNISTD_H 1 | #define WORDS_BIGENDIAN 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((pid_t))) | return 0; | ; | return 0; | } configure:16798: result: yes configure:16809: checking for size_t configure:16809: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5 configure:16809: $? = 0 configure:16809: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5 conftest.c: In function `main': conftest.c:63: error: syntax error before ')' token configure:16809: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "EMBOSS" | #define PACKAGE_TARNAME "EMBOSS" | #define PACKAGE_VERSION "6.4.0" | #define PACKAGE_STRING "EMBOSS 6.4.0" | #define PACKAGE_BUGREPORT "emboss-bug@emboss.open-bio.org" | #define PACKAGE_URL "http://emboss.sourceforge.net/" | #define PACKAGE "EMBOSS" | #define VERSION "6.4.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_UNISTD_H 1 | #define WORDS_BIGENDIAN 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((size_t))) | return 0; | ; | return 0; | } configure:16809: result: yes configure:16820: checking whether struct tm is in sys/time.h or time.h configure:16840: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5 configure:16840: $? = 0 configure:16847: result: time.h configure:16857: checking whether getpgrp requires zero arguments configure:16874: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5 conftest.c: In function `main': conftest.c:63: error: too many arguments to function `getpgrp' configure:16874: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "EMBOSS" | #define PACKAGE_TARNAME "EMBOSS" | #define PACKAGE_VERSION "6.4.0" | #define PACKAGE_STRING "EMBOSS 6.4.0" | #define PACKAGE_BUGREPORT "emboss-bug@emboss.open-bio.org" | #define PACKAGE_URL "http://emboss.sourceforge.net/" | #define PACKAGE "EMBOSS" | #define VERSION "6.4.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_UNISTD_H 1 | #define WORDS_BIGENDIAN 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | getpgrp (0); | ; | return 0; | } configure:16882: result: yes configure:16892: checking for strftime configure:16892: gcc -o conftest -O2 -D__EXTENSIONS__ conftest.c >&5 conftest.c:51: warning: conflicting types for built-in function 'strftime' configure:16892: $? = 0 configure:16892: result: yes configure:16947: checking vfork.h usability configure:16947: gcc -c -O2 -D__EXTENSIONS__ conftest.c >&5 conftest.c:62:19: vfork.h: No such file or directory configure:16947: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "EMBOSS" | #define PACKAGE_TARNAME "EMBOSS" | #define PACKAGE_VERSION "6.4.0" | #define PACKAGE_STRING "EMBOSS 6.4.0" | #define PACKAGE_BUGREPORT "emboss-bug@emboss.open-bio.org" | #define PACKAGE_URL "http://emboss.sourceforge.net/" | #define PACKAGE "EMBOSS" | #define VERSION "6.4.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_UNISTD_H 1 | #define WORDS_BIGENDIAN 1 | #define GETPGRP_VOID 1 | #define HAVE_STRFTIME 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:16947: result: no configure:16947: checking vfork.h presence configure:16947: gcc -E conftest.c conftest.c:29:19: vfork.h: No such file or directory configure:16947: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "EMBOSS" | #define PACKAGE_TARNAME "EMBOSS" | #define PACKAGE_VERSION "6.4.0" | #define PACKAGE_STRING "EMBOSS 6.4.0" | #define PACKAGE_BUGREPORT "emboss-bug@emboss.open-bio.org" | #define PACKAGE_URL "http://emboss.sourceforge.net/" | #define PACKAGE "EMBOSS" | #define VERSION "6.4.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_UNISTD_H 1 | #define WORDS_BIGENDIAN 1 | #define GETPGRP_VOID 1 | #define HAVE_STRFTIME 1 | /* end confdefs.h. */ | #include configure:16947: result: no configure:16947: checking for vfork.h configure:16947: result: no configure:16960: checking for fork configure:16960: gcc -o conftest -O2 -D__EXTENSIONS__ conftest.c >&5 configure:16960: $? = 0 configure:16960: result: yes configure:16960: checking for vfork configure:16960: gcc -o conftest -O2 -D__EXTENSIONS__ conftest.c >&5 configure:16960: $? = 0 configure:16960: result: yes configure:16970: checking for working fork configure:16992: gcc -o conftest -O2 -D__EXTENSIONS__ conftest.c >&5 configure:16992: $? = 0 configure:16992: ./conftest configure:16992: $? = 0 configure:17002: result: yes configure:17023: checking for working vfork configure:17133: result: yes configure:17160: checking for vprintf configure:17160: gcc -o conftest -O2 -D__EXTENSIONS__ conftest.c >&5 conftest.c:56: warning: conflicting types for built-in function 'vprintf' configure:17160: $? = 0 configure:17160: result: yes configure:17166: checking for _doprnt configure:17166: gcc -o conftest -O2 -D__EXTENSIONS__ conftest.c >&5 configure:17166: $? = 0 configure:17166: result: yes configure:17180: checking for memmove configure:17180: gcc -o conftest -O2 -D__EXTENSIONS__ conftest.c >&5 conftest.c:58: warning: conflicting types for built-in function 'memmove' configure:17180: $? = 0 configure:17180: result: yes configure:17205: checking X11/Xlib.h usability configure:17205: gcc -c -O2 -D__EXTENSIONS__ -I/usr/openwin/include conftest.c >&5 configure:17205: $? = 0 configure:17205: result: yes configure:17205: checking X11/Xlib.h presence configure:17205: gcc -E conftest.c configure:17205: $? = 0 configure:17205: result: yes configure:17205: checking for X11/Xlib.h configure:17205: result: yes configure:17241: checking for socket in -lc configure:17266: gcc -o conftest -O2 -D__EXTENSIONS__ -I/usr/openwin/include conftest.c -lc >&5 Undefined first referenced symbol in file socket /var/tmp//ccEuGTRb.o ld: fatal: Symbol referencing errors. No output written to conftest collect2: ld returned 1 exit status configure:17266: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "EMBOSS" | #define PACKAGE_TARNAME "EMBOSS" | #define PACKAGE_VERSION "6.4.0" | #define PACKAGE_STRING "EMBOSS 6.4.0" | #define PACKAGE_BUGREPORT "emboss-bug@emboss.open-bio.org" | #define PACKAGE_URL "http://emboss.sourceforge.net/" | #define PACKAGE "EMBOSS" | #define VERSION "6.4.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_UNISTD_H 1 | #define WORDS_BIGENDIAN 1 | #define GETPGRP_VOID 1 | #define HAVE_STRFTIME 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE_VPRINTF 1 | #define HAVE_DOPRNT 1 | #define HAVE_MEMMOVE 1 | #define PLD_xwin 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char socket (); | int | main () | { | return socket (); | ; | return 0; | } configure:17275: result: no configure:17283: checking for main in -lm configure:17302: gcc -o conftest -O2 -D__EXTENSIONS__ -I/usr/openwin/include conftest.c -lm -lsocket >&5 configure:17302: $? = 0 configure:17311: result: yes configure:17388: checking if docroot is given configure:17400: result: no configure:17409: checking if gcc profiling is selected configure:17422: result: no configure:17431: checking for EMBOSS pre-indexed databases configure:17436: result: yes configure:17452: checking if java include directory given configure:17526: result: no configure:17542: checking if java OS include directory given configure:17563: result: no configure:17583: checking whether to look for pdf support configure:17598: result: yes configure:17627: checking for HPDF_New in -lhpdf configure:17652: gcc -o conftest -O2 -D__EXTENSIONS__ -I/usr/openwin/include -I/usr/include -L/usr/lib conftest.c -lhpdf -L/usr/lib -lm -lsocket >&5 ld: fatal: library -lhpdf: not found ld: fatal: File processing errors. No output written to conftest collect2: ld returned 1 exit status configure:17652: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "EMBOSS" | #define PACKAGE_TARNAME "EMBOSS" | #define PACKAGE_VERSION "6.4.0" | #define PACKAGE_STRING "EMBOSS 6.4.0" | #define PACKAGE_BUGREPORT "emboss-bug@emboss.open-bio.org" | #define PACKAGE_URL "http://emboss.sourceforge.net/" | #define PACKAGE "EMBOSS" | #define VERSION "6.4.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_UNISTD_H 1 | #define WORDS_BIGENDIAN 1 | #define GETPGRP_VOID 1 | #define HAVE_STRFTIME 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE_VPRINTF 1 | #define HAVE_DOPRNT 1 | #define HAVE_MEMMOVE 1 | #define PLD_xwin 1 | #define HAVE_LIBM 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char HPDF_New (); | int | main () | { | return HPDF_New (); | ; | return 0; | } configure:17661: result: no configure:17775: checking for pkg-config configure:17793: found /usr/bin/pkg-config configure:17805: result: /usr/bin/pkg-config configure:17830: checking pkg-config is at least version 0.9.0 configure:17833: result: yes configure:17842: checking whether to look for axis2c support configure:18017: result: no configure:18031: checking if png driver is wanted configure:18046: result: yes configure:18075: checking for libiconv_close in -liconv configure:18100: gcc -o conftest -O2 -D__EXTENSIONS__ -I/usr/openwin/include -I/usr/include -L/usr/lib conftest.c -liconv -L/usr/lib -liconv -lm -lsocket >&5 ld: fatal: library -liconv: not found ld: fatal: library -liconv: not found ld: fatal: File processing errors. No output written to conftest collect2: ld returned 1 exit status configure:18100: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "EMBOSS" | #define PACKAGE_TARNAME "EMBOSS" | #define PACKAGE_VERSION "6.4.0" | #define PACKAGE_STRING "EMBOSS 6.4.0" | #define PACKAGE_BUGREPORT "emboss-bug@emboss.open-bio.org" | #define PACKAGE_URL "http://emboss.sourceforge.net/" | #define PACKAGE "EMBOSS" | #define VERSION "6.4.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_UNISTD_H 1 | #define WORDS_BIGENDIAN 1 | #define GETPGRP_VOID 1 | #define HAVE_STRFTIME 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE_VPRINTF 1 | #define HAVE_DOPRNT 1 | #define HAVE_MEMMOVE 1 | #define PLD_xwin 1 | #define HAVE_LIBM 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char libiconv_close (); | int | main () | { | return libiconv_close (); | ; | return 0; | } configure:18109: result: no configure:18131: checking for inflateEnd in -lz configure:18156: gcc -o conftest -O2 -D__EXTENSIONS__ -I/usr/openwin/include -I/usr/include -L/usr/lib -R/usr/lib conftest.c -lz -L/usr/lib -lz -lm -lsocket >&5 configure:18156: $? = 0 configure:18165: result: yes configure:18179: checking for png_destroy_read_struct in -lpng configure:18204: gcc -o conftest -O2 -D__EXTENSIONS__ -I/usr/openwin/include -I/usr/include -L/usr/lib -R/usr/lib conftest.c -lpng -L/usr/lib -lz -lm -lsocket >&5 configure:18204: $? = 0 configure:18213: result: yes configure:18230: checking for gdImageCreateFromPng in -lgd configure:18255: gcc -o conftest -O2 -D__EXTENSIONS__ -I/usr/openwin/include -I/usr/include -L/usr/lib -R/usr/lib conftest.c -lgd -L/usr/lib -lgd -lpng -lz -lm -lm -lsocket >&5 ld: fatal: library -lgd: not found ld: fatal: library -lgd: not found ld: fatal: File processing errors. No output written to conftest collect2: ld returned 1 exit status configure:18255: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "EMBOSS" | #define PACKAGE_TARNAME "EMBOSS" | #define PACKAGE_VERSION "6.4.0" | #define PACKAGE_STRING "EMBOSS 6.4.0" | #define PACKAGE_BUGREPORT "emboss-bug@emboss.open-bio.org" | #define PACKAGE_URL "http://emboss.sourceforge.net/" | #define PACKAGE "EMBOSS" | #define VERSION "6.4.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_UNISTD_H 1 | #define WORDS_BIGENDIAN 1 | #define GETPGRP_VOID 1 | #define HAVE_STRFTIME 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE_VPRINTF 1 | #define HAVE_DOPRNT 1 | #define HAVE_MEMMOVE 1 | #define PLD_xwin 1 | #define HAVE_LIBM 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char gdImageCreateFromPng (); | int | main () | { | return gdImageCreateFromPng (); | ; | return 0; | } configure:18264: result: no configure:18341: checking if any authorisation type is given configure:18460: result: no configure:18479: checking if Linux x86_64 configure:18494: result: no configure:18532: checking for mysql_config configure:18550: found /usr/sfw/bin/mysql_config configure:18563: result: /usr/sfw/bin/mysql_config configure:18574: checking for MySQL libraries configure:18602: gcc -o conftest -O2 -D__EXTENSIONS__ -I/usr/openwin/include -DNO_AUTH -I/usr/sfw/include/mysql -R/usr/sfw/lib -R/usr/sfw/lib/mysql -L/usr/sfw/lib -L/usr/sfw/lib/mysql -lmysqlclient -lz -lposix4 -lcrypt -lgen -lsocket -lnsl -lm conftest.c -lm -lsocket >&5 configure:18602: $? = 0 configure:18618: result: yes configure:18712: checking for pg_config configure:18730: found /usr/bin/pg_config configure:18743: result: /usr/bin/pg_config configure:18754: checking for PostgreSQL libraries configure:18782: gcc -o conftest -O2 -D__EXTENSIONS__ -I/usr/openwin/include -DNO_AUTH -L/usr/lib -lpq conftest.c -lm -lsocket >&5 conftest.c:40:68: libpq-fe.h: No such file or directory configure:18782: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "EMBOSS" | #define PACKAGE_TARNAME "EMBOSS" | #define PACKAGE_VERSION "6.4.0" | #define PACKAGE_STRING "EMBOSS 6.4.0" | #define PACKAGE_BUGREPORT "emboss-bug@emboss.open-bio.org" | #define PACKAGE_URL "http://emboss.sourceforge.net/" | #define PACKAGE "EMBOSS" | #define VERSION "6.4.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_UNISTD_H 1 | #define WORDS_BIGENDIAN 1 | #define GETPGRP_VOID 1 | #define HAVE_STRFTIME 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE_VPRINTF 1 | #define HAVE_DOPRNT 1 | #define HAVE_MEMMOVE 1 | #define PLD_xwin 1 | #define HAVE_LIBM 1 | #define HAVE_MYSQL 1 | /* end confdefs.h. */ | #include | #include "libpq-fe.h" | int | main () | { | PQconnectdb(NULL) | ; | return 0; | } configure:18805: result: no configure:18867: checking for javac configure:18883: found /usr/bin/javac configure:18895: result: true configure:18905: checking for ant configure:18921: found /usr/sfw/bin/ant configure:18933: result: true configure:18992: checking for large file support configure:19032: result: done configure:19066: checking for purify configure:19079: result: no configure:19125: checking for cygwin configure:19135: result: no configure:19221: checking for mprobe configure:19233: result: no configure:19242: checking for savestats configure:19256: result: no configure:19263: checking if any threading type is given configure:19328: result: no configure:19534: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by EMBOSS config.status 6.4.0, which was generated by GNU Autoconf 2.68. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on antares config.status:1285: creating Makefile config.status:1285: creating ajax/Makefile config.status:1285: creating ajax/acd/Makefile config.status:1285: creating ajax/ajaxdb/Makefile config.status:1285: creating ajax/core/Makefile config.status:1285: creating ajax/ensembl/Makefile config.status:1285: creating ajax/expat/Makefile config.status:1285: creating ajax/graphics/Makefile config.status:1285: creating ajax/pcre/Makefile config.status:1285: creating ajax/zlib/Makefile config.status:1285: creating doc/Makefile config.status:1285: creating doc/manuals/Makefile config.status:1285: creating doc/programs/Makefile config.status:1285: creating doc/programs/html/Makefile config.status:1285: creating doc/programs/text/Makefile config.status:1285: creating doc/tutorials/Makefile config.status:1285: creating emboss/Makefile config.status:1285: creating emboss/acd/Makefile config.status:1285: creating emboss/data/AAINDEX/Makefile config.status:1285: creating emboss/data/CODONS/Makefile config.status:1285: creating emboss/data/JASPAR_CNE/Makefile config.status:1285: creating emboss/data/JASPAR_CORE/Makefile config.status:1285: creating emboss/data/JASPAR_FAM/Makefile config.status:1285: creating emboss/data/JASPAR_PBM/Makefile config.status:1285: creating emboss/data/JASPAR_PBM_HLH/Makefile config.status:1285: creating emboss/data/JASPAR_PBM_HOMEO/Makefile config.status:1285: creating emboss/data/JASPAR_PHYLOFACTS/Makefile config.status:1285: creating emboss/data/JASPAR_POLII/Makefile config.status:1285: creating emboss/data/JASPAR_SPLICE/Makefile config.status:1285: creating emboss/data/Makefile config.status:1285: creating emboss/data/OBO/Makefile config.status:1285: creating emboss/data/PRINTS/Makefile config.status:1285: creating emboss/data/PROSITE/Makefile config.status:1285: creating emboss/data/REBASE/Makefile config.status:1285: creating emboss/data/TAXONOMY/Makefile config.status:1285: creating emboss/index/Makefile config.status:1285: creating jemboss/Makefile config.status:1285: creating jemboss/images/Makefile config.status:1285: creating jemboss/lib/Makefile config.status:1285: creating jemboss/lib/axis/Makefile config.status:1285: creating jemboss/resources/Makefile config.status:1285: creating jemboss/utils/Makefile config.status:1285: creating nucleus/Makefile config.status:1285: creating plplot/Makefile config.status:1285: creating plplot/lib/Makefile config.status:1285: creating test/Makefile config.status:1285: creating test/data/Makefile config.status:1285: creating test/embl/Makefile config.status:1285: creating test/genbank/Makefile config.status:1285: creating test/pir/Makefile config.status:1285: creating test/swiss/Makefile config.status:1285: creating test/swnew/Makefile config.status:1285: creating test/testdb/Makefile config.status:1285: creating ajax/core/config.h config.status:1514: executing depfiles commands config.status:1514: executing libtool commands ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=sparc-sun-solaris2.10 ac_cv_c_bigendian=yes ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_c_inline=inline ac_cv_cxx_compiler_gnu=yes ac_cv_env_AXIS2C_CFLAGS_set= ac_cv_env_AXIS2C_CFLAGS_value= ac_cv_env_AXIS2C_LIBS_set= ac_cv_env_AXIS2C_LIBS_value= ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_PKG_CONFIG_LIBDIR_set= ac_cv_env_PKG_CONFIG_LIBDIR_value= ac_cv_env_PKG_CONFIG_PATH_set= ac_cv_env_PKG_CONFIG_PATH_value= ac_cv_env_PKG_CONFIG_set= ac_cv_env_PKG_CONFIG_value= ac_cv_env_XMKMF_set= ac_cv_env_XMKMF_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func__doprnt=yes ac_cv_func_connect=no ac_cv_func_fork=yes ac_cv_func_fork_works=yes ac_cv_func_gethostbyname=no ac_cv_func_getpgrp_void=yes ac_cv_func_memmove=yes ac_cv_func_remove=yes ac_cv_func_shmat=yes ac_cv_func_strftime=yes ac_cv_func_vfork=yes ac_cv_func_vfork_works=yes ac_cv_func_vprintf=yes ac_cv_have_x='have_x=yes ac_x_includes='\''/usr/openwin/include'\'' ac_x_libraries='\''/usr/openwin/lib'\''' ac_cv_header_TargetConfig_h=no ac_cv_header_X11_Xlib_h=yes ac_cv_header_dirent_dirent_h=yes ac_cv_header_dlfcn_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_header_vfork_h=no ac_cv_host=sparc-sun-solaris2.10 ac_cv_lib_ICE_IceConnectionNumber=yes ac_cv_lib_c_socket=no ac_cv_lib_gd_gdImageCreateFromPng=no ac_cv_lib_hpdf_HPDF_New=no ac_cv_lib_iconv_libiconv_close=no ac_cv_lib_m_main=yes ac_cv_lib_nsl_gethostbyname=yes ac_cv_lib_png_png_destroy_read_struct=yes ac_cv_lib_socket_connect=yes ac_cv_lib_z_inflateEnd=yes ac_cv_objext=o ac_cv_path_EGREP='/usr/sfw/bin/ggrep -E' ac_cv_path_FGREP='/usr/sfw/bin/ggrep -F' ac_cv_path_GREP=/usr/sfw/bin/ggrep ac_cv_path_MYSQL_CONFIG=/usr/sfw/bin/mysql_config ac_cv_path_PG_CONFIG=/usr/bin/pg_config ac_cv_path_SED=/opt/csw/bin/gsed ac_cv_path_ac_pt_PKG_CONFIG=/usr/bin/pkg-config ac_cv_path_install='/opt/csw/bin/ginstall -c' ac_cv_path_mkdir=/opt/csw/bin/gmkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_MANIFEST_TOOL=mt ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_ant_in_path=true ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_javac_in_path=true ac_cv_prog_make_make_set=yes ac_cv_search_opendir='none required' ac_cv_struct_tm=time.h ac_cv_type_pid_t=yes ac_cv_type_size_t=yes am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 lt_cv_ar_at_file=no lt_cv_archive_cmds_need_lc=yes lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/ccs/bin/ld lt_cv_path_LDCXX=/usr/ccs/bin/ld lt_cv_path_NM='/usr/ccs/bin/nm -p' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_pic='-fPIC -DPIC' lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC' lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=no lt_cv_prog_compiler_static_works_CXX=no lt_cv_prog_gnu_ld=no lt_cv_prog_gnu_ldcxx=no lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([BDRT][BDRT]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[BDRT]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[BDRT]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[BDRT]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[BDRT]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=786240 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /home/psgendb/local/pkg/EMBOSS-6.4.0_download/EMBOSS-6.4.0/missing --run aclocal-1.11' AJAX_FIXED_ROOT='\"/home/psgendb/local/pkg/EMBOSS-6.4.0_download/EMBOSS-6.4.0/emboss\"' AJAX_SYSTEM='\"SunOS\"' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMPDF_FALSE='' AMPDF_TRUE='#' AMPNG_FALSE='' AMPNG_TRUE='#' AMTAR='${SHELL} /home/psgendb/local/pkg/EMBOSS-6.4.0_download/EMBOSS-6.4.0/missing --run tar' AR='ar' AUTOCONF='${SHELL} /home/psgendb/local/pkg/EMBOSS-6.4.0_download/EMBOSS-6.4.0/missing --run autoconf' AUTOHEADER='${SHELL} /home/psgendb/local/pkg/EMBOSS-6.4.0_download/EMBOSS-6.4.0/missing --run autoheader' AUTOMAKE='${SHELL} /home/psgendb/local/pkg/EMBOSS-6.4.0_download/EMBOSS-6.4.0/missing --run automake-1.11' AWK='gawk' AXIS2C_CFLAGS='' AXIS2C_CPPFLAGS='' AXIS2C_LDFLAGS='' AXIS2C_LIBS='' CC='gcc' CCDEPMODE='depmode=gcc3' CFLAGS=' -O2 -D__EXTENSIONS__ -I/usr/openwin/include -DNO_AUTH' CPP='gcc -E' CPPFLAGS='-DAJ_SolarisLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE ' CXX='g++' CXXCPP='g++ -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DEVWARN_CFLAGS='' DLLTOOL='false' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/usr/sfw/bin/ggrep -E' EHAVEANT='' EHAVEANT_FALSE='#' EHAVEANT_TRUE='' EMBOSS_TOP='/home/psgendb/local/pkg/EMBOSS-6.4.0_download/EMBOSS-6.4.0' ESYSTEMLIBS='' ESYSTEMLIBS_FALSE='' ESYSTEMLIBS_TRUE='#' EXEEXT='' FGREP='/usr/sfw/bin/ggrep -F' GREP='/usr/sfw/bin/ggrep' HAVE_MEMMOVE='' HAVE_STRERROR='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' ISAIXIA64='' ISAIXIA64_FALSE='' ISAIXIA64_TRUE='#' ISCYGWIN='' ISCYGWIN_FALSE='' ISCYGWIN_TRUE='#' ISGCC_FALSE='#' ISGCC_TRUE='' ISSHARED_FALSE='#' ISSHARED_TRUE='' JAVA_OK='' LD='/usr/ccs/bin/ld' LDFLAGS='' LIBOBJS='' LIBS='-lm -lsocket' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' MAKEINFO='${SHELL} /home/psgendb/local/pkg/EMBOSS-6.4.0_download/EMBOSS-6.4.0/missing --run makeinfo' MANIFEST_TOOL=':' MKDIR_P='/opt/csw/bin/gmkdir -p' MYSQL_CFLAGS='-I/usr/sfw/include/mysql -xstrconst -mt' MYSQL_CONFIG='/usr/sfw/bin/mysql_config' MYSQL_CPPFLAGS='-I/usr/sfw/include/mysql' MYSQL_LDFLAGS='-R/usr/sfw/lib -R/usr/sfw/lib/mysql -L/usr/sfw/lib -L/usr/sfw/lib/mysql -lmysqlclient -lz -lposix4 -lcrypt -lgen -lsocket -lnsl -lm' MYSQL_VERSION='4.0.31' NEEDAJAX='' NEEDAJAX_FALSE='' NEEDAJAX_TRUE='#' NM='/usr/ccs/bin/nm -p' NMEDIT='' OBJDUMP='false' OBJEXT='o' OTOOL64='' OTOOL='' PACKAGE='EMBOSS' PACKAGE_BUGREPORT='emboss-bug@emboss.open-bio.org' PACKAGE_NAME='EMBOSS' PACKAGE_STRING='EMBOSS 6.4.0' PACKAGE_TARNAME='EMBOSS' PACKAGE_URL='http://emboss.sourceforge.net/' PACKAGE_VERSION='6.4.0' PATH_SEPARATOR=':' PCRE_DATE='11-Apr-2009' PCRE_LIB_VERSION='0:1:0' PCRE_MAJOR='7' PCRE_MINOR='9' PCRE_POSIXLIB_VERSION='0:0:0' PCRE_VERSION='7.9' PG_CONFIG='/usr/bin/pg_config' PKG_CONFIG='/usr/bin/pkg-config' PKG_CONFIG_LIBDIR='' PKG_CONFIG_PATH='' POSIX_MALLOC_THRESHOLD='-DPOSIX_MALLOC_THRESHOLD=10' POSTGRESQL_CFLAGS='' POSTGRESQL_CPPFLAGS='' POSTGRESQL_LDFLAGS='' POSTGRESQL_VERSION='8.1.17' PURIFY_FALSE='' PURIFY_TRUE='#' RANLIB='ranlib' SED='/opt/csw/bin/gsed' SET_MAKE='' SHELL='/bin/bash' STRIP='strip' VERSION='6.4.0' WARN_CFLAGS='' XLIB=' -L/usr/openwin/lib -R/usr/openwin/lib -lX11 -lsocket -lnsl' XMKMF='' X_CFLAGS=' -I/usr/openwin/include' X_EXTRA_LIBS='-lsocket -lnsl' X_LIBS=' -L/usr/openwin/lib -R/usr/openwin/lib' X_PRE_LIBS=' -lSM -lICE' ac_ct_AR='ar' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_DUMPBIN='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__quote='' am__tar='${AMTAR} chof - "$$tardir"' am__untar='${AMTAR} xf -' ant_in_path='true' bindir='${exec_prefix}/bin' build='sparc-sun-solaris2.10' build_alias='' build_cpu='sparc' build_os='solaris2.10' build_vendor='sun' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' havejavac='' host='sparc-sun-solaris2.10' host_alias='' host_cpu='sparc' host_os='solaris2.10' host_vendor='sun' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /home/psgendb/local/pkg/EMBOSS-6.4.0_download/EMBOSS-6.4.0/install-sh' javac_in_path='true' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='/opt/csw/bin/gmkdir -p' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/home/psgendb/local/pkg/EMBOSS-6.4.0/solaris-sparc' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "EMBOSS" #define PACKAGE_TARNAME "EMBOSS" #define PACKAGE_VERSION "6.4.0" #define PACKAGE_STRING "EMBOSS 6.4.0" #define PACKAGE_BUGREPORT "emboss-bug@emboss.open-bio.org" #define PACKAGE_URL "http://emboss.sourceforge.net/" #define PACKAGE "EMBOSS" #define VERSION "6.4.0" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define HAVE_DIRENT_H 1 #define STDC_HEADERS 1 #define HAVE_UNISTD_H 1 #define WORDS_BIGENDIAN 1 #define GETPGRP_VOID 1 #define HAVE_STRFTIME 1 #define HAVE_FORK 1 #define HAVE_VFORK 1 #define HAVE_WORKING_VFORK 1 #define HAVE_WORKING_FORK 1 #define HAVE_VPRINTF 1 #define HAVE_DOPRNT 1 #define HAVE_MEMMOVE 1 #define PLD_xwin 1 #define HAVE_LIBM 1 #define HAVE_MYSQL 1 configure: exit 0