"""Miscellaneous functions for testing masked arrays and subclasses :author: Pierre Gerard-Marchant :contact: pierregm_at_uga_dot_edu :version: $Id: testutils.py 3529 2007-11-13 08:01:14Z jarrod.millman $ """ __author__ = "Pierre GF Gerard-Marchant ($Author: jarrod.millman $)" __version__ = "1.0" __revision__ = "$Revision: 3529 $" __date__ = "$Date: 2007-11-13 10:01:14 +0200 (Tue, 13 Nov 2007) $" import operator import numpy as np from numpy import ndarray, float_ import numpy.core.umath as umath from numpy.testing import * import numpy.testing.utils as utils from core import mask_or, getmask, masked_array, nomask, masked, filled, \ equal, less #------------------------------------------------------------------------------ def approx (a, b, fill_value=True, rtol=1e-5, atol=1e-8): """Returns true if all components of a and b are equal subject to given tolerances. If fill_value is True, masked values considered equal. Otherwise, masked values are considered unequal. The relative error rtol should be positive and << 1.0 The absolute error atol comes into play for those elements of b that are very small or zero; it says how small a must be also. """ m = mask_or(getmask(a), getmask(b)) d1 = filled(a) d2 = filled(b) if d1.dtype.char == "O" or d2.dtype.char == "O": return np.equal(d1, d2).ravel() x = filled(masked_array(d1, copy=False, mask=m), fill_value).astype(float_) y = filled(masked_array(d2, copy=False, mask=m), 1).astype(float_) d = np.less_equal(umath.absolute(x - y), atol + rtol * umath.absolute(y)) return d.ravel() def almost(a, b, decimal=6, fill_value=True): """Returns True if a and b are equal up to decimal places. If fill_value is True, masked values considered equal. Otherwise, masked values are considered unequal. """ m = mask_or(getmask(a), getmask(b)) d1 = filled(a) d2 = filled(b) if d1.dtype.char == "O" or d2.dtype.char == "O": return np.equal(d1, d2).ravel() x = filled(masked_array(d1, copy=False, mask=m), fill_value).astype(float_) y = filled(masked_array(d2, copy=False, mask=m), 1).astype(float_) d = np.around(np.abs(x - y), decimal) <= 10.0 ** (-decimal) return d.ravel() #................................................ def _assert_equal_on_sequences(actual, desired, err_msg=''): "Asserts the equality of two non-array sequences." assert_equal(len(actual), len(desired), err_msg) for k in range(len(desired)): assert_equal(actual[k], desired[k], 'item=%r\n%s' % (k, err_msg)) return def assert_equal_records(a, b): """Asserts that two records are equal. Pretty crude for now.""" assert_equal(a.dtype, b.dtype) for f in a.dtype.names: (af, bf) = (operator.getitem(a, f), operator.getitem(b, f)) if not (af is masked) and not (bf is masked): assert_equal(operator.getitem(a, f), operator.getitem(b, f)) return def assert_equal(actual, desired, err_msg=''): "Asserts that two items are equal." # Case #1: dictionary ..... if isinstance(desired, dict): if not isinstance(actual, dict): raise AssertionError(repr(type(actual))) assert_equal(len(actual), len(desired), err_msg) for k, i in desired.items(): if not k in actual: raise AssertionError("%s not in %s" % (k, actual)) assert_equal(actual[k], desired[k], 'key=%r\n%s' % (k, err_msg)) return # Case #2: lists ..... if isinstance(desired, (list, tuple)) and isinstance(actual, (list, tuple)): return _assert_equal_on_sequences(actual, desired, err_msg='') if not (isinstance(actual, ndarray) or isinstance(desired, ndarray)): msg = build_err_msg([actual, desired], err_msg,) if not desired == actual: raise AssertionError(msg) return # Case #4. arrays or equivalent if ((actual is masked) and not (desired is masked)) or \ ((desired is masked) and not (actual is masked)): msg = build_err_msg([actual, desired], err_msg, header='', names=('x', 'y')) raise ValueError(msg) actual = np.array(actual, copy=False, subok=True) desired = np.array(desired, copy=False, subok=True) (actual_dtype, desired_dtype) = (actual.dtype, desired.dtype) if actual_dtype.char == "S" and desired_dtype.char == "S": return _assert_equal_on_sequences(actual.tolist(), desired.tolist(), err_msg='') # elif actual_dtype.char in "OV" and desired_dtype.char in "OV": # if (actual_dtype != desired_dtype) and actual_dtype: # msg = build_err_msg([actual_dtype, desired_dtype], # err_msg, header='', names=('actual', 'desired')) # raise ValueError(msg) # return _assert_equal_on_sequences(actual.tolist(), # desired.tolist(), # err_msg='') return assert_array_equal(actual, desired, err_msg) def fail_if_equal(actual, desired, err_msg='',): """Raises an assertion error if two items are equal. """ if isinstance(desired, dict): if not isinstance(actual, dict): raise AssertionError(repr(type(actual))) fail_if_equal(len(actual), len(desired), err_msg) for k, i in desired.items(): if not k in actual: raise AssertionError(repr(k)) fail_if_equal(actual[k], desired[k], 'key=%r\n%s' % (k, err_msg)) return if isinstance(desired, (list, tuple)) and isinstance(actual, (list, tuple)): fail_if_equal(len(actual), len(desired), err_msg) for k in range(len(desired)): fail_if_equal(actual[k], desired[k], 'item=%r\n%s' % (k, err_msg)) return if isinstance(actual, np.ndarray) or isinstance(desired, np.ndarray): return fail_if_array_equal(actual, desired, err_msg) msg = build_err_msg([actual, desired], err_msg) if not desired != actual: raise AssertionError(msg) assert_not_equal = fail_if_equal def assert_almost_equal(actual, desired, decimal=7, err_msg='', verbose=True): """Asserts that two items are almost equal. The test is equivalent to abs(desired-actual) < 0.5 * 10**(-decimal) """ if isinstance(actual, np.ndarray) or isinstance(desired, np.ndarray): return assert_array_almost_equal(actual, desired, decimal=decimal, err_msg=err_msg, verbose=verbose) msg = build_err_msg([actual, desired], err_msg=err_msg, verbose=verbose) if not round(abs(desired - actual), decimal) == 0: raise AssertionError(msg) assert_close = assert_almost_equal def assert_array_compare(comparison, x, y, err_msg='', verbose=True, header='', fill_value=True): """Asserts that a comparison relation between two masked arrays is satisfied elementwise.""" # Fill the data first # xf = filled(x) # yf = filled(y) # Allocate a common mask and refill m = mask_or(getmask(x), getmask(y)) x = masked_array(x, copy=False, mask=m, keep_mask=False, subok=False) y = masked_array(y, copy=False, mask=m, keep_mask=False, subok=False) if ((x is masked) and not (y is masked)) or \ ((y is masked) and not (x is masked)): msg = build_err_msg([x, y], err_msg=err_msg, verbose=verbose, header=header, names=('x', 'y')) raise ValueError(msg) # OK, now run the basic tests on filled versions return utils.assert_array_compare(comparison, x.filled(fill_value), y.filled(fill_value), err_msg=err_msg, verbose=verbose, header=header) def assert_array_equal(x, y, err_msg='', verbose=True): """Checks the elementwise equality of two masked arrays.""" assert_array_compare(operator.__eq__, x, y, err_msg=err_msg, verbose=verbose, header='Arrays are not equal') def fail_if_array_equal(x, y, err_msg='', verbose=True): "Raises an assertion error if two masked arrays are not equal (elementwise)." def compare(x, y): return (not np.alltrue(approx(x, y))) assert_array_compare(compare, x, y, err_msg=err_msg, verbose=verbose, header='Arrays are not equal') def assert_array_approx_equal(x, y, decimal=6, err_msg='', verbose=True): """Checks the elementwise equality of two masked arrays, up to a given number of decimals.""" def compare(x, y): "Returns the result of the loose comparison between x and y)." return approx(x, y, rtol=10. ** -decimal) assert_array_compare(compare, x, y, err_msg=err_msg, verbose=verbose, header='Arrays are not almost equal') def assert_array_almost_equal(x, y, decimal=6, err_msg='', verbose=True): """Checks the elementwise equality of two masked arrays, up to a given number of decimals.""" def compare(x, y): "Returns the result of the loose comparison between x and y)." return almost(x, y, decimal) assert_array_compare(compare, x, y, err_msg=err_msg, verbose=verbose, header='Arrays are not almost equal') def assert_array_less(x, y, err_msg='', verbose=True): "Checks that x is smaller than y elementwise." assert_array_compare(operator.__lt__, x, y, err_msg=err_msg, verbose=verbose, header='Arrays are not less-ordered') def assert_mask_equal(m1, m2, err_msg=''): """Asserts the equality of two masks.""" if m1 is nomask: assert_(m2 is nomask) if m2 is nomask: assert_(m1 is nomask) assert_array_equal(m1, m2, err_msg=err_msg)