This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by clustalw configure 2.0.10, which was generated by GNU Autoconf 2.61. Invocation command line was $ ./configure ## --------- ## ## Platform. ## ## --------- ## hostname = deneb uname -m = sun4u uname -r = 5.10 uname -s = SunOS uname -v = Generic_139555-08 /usr/bin/uname -p = sparc /bin/uname -X = System = SunOS Node = deneb Release = 5.10 KernelID = Generic_139555-08 Machine = sun4u BusType = Serial = Users = OEM# = 0 Origin# = 1 NumCPU = 4 /bin/arch = sun4 /usr/bin/arch -k = sun4u /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /home/psgendb/local/script PATH: /home/psgendb/local/bin-solaris-sparc PATH: /usr/sfw/bin PATH: /opt/SUNWspro/bin PATH: /usr/bin PATH: /usr/local/bin PATH: /opt/csw/bin PATH: /usr/ccs/bin PATH: /usr/local/adminsys/bin PATH: /usr/local/sybase/client/bin PATH: /usr/X11/bin PATH: /usr/dt/bin PATH: /usr/openwin/bin PATH: /usr/openwin/demo PATH: /home/psgendb/script PATH: /home/psgendb/bin-solaris-sparc PATH: /home/psgendb/local/pkg/EMBOSS/solaris-sparc/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:1815: checking build system type configure:1833: result: sparc-sun-solaris2.10 configure:1855: checking host system type configure:1870: result: sparc-sun-solaris2.10 configure:1892: checking target system type configure:1907: result: sparc-sun-solaris2.10 configure:2003: checking for a BSD-compatible install configure:2059: result: /opt/csw/bin/ginstall -c configure:2070: checking whether build environment is sane configure:2113: result: yes configure:2141: checking for a thread-safe mkdir -p configure:2180: result: /opt/csw/bin/gmkdir -p configure:2193: checking for gawk configure:2209: found /opt/csw/bin/gawk configure:2220: result: gawk configure:2231: checking whether make sets $(MAKE) configure:2252: result: yes configure:2441: checking whether make sets $(MAKE) configure:2462: result: yes configure:2522: checking for gcc configure:2538: found /usr/sfw/bin/gcc configure:2549: result: gcc configure:2787: checking for C compiler version configure:2794: gcc --version >&5 gcc (GCC) 3.4.3 (csl-sol210-3_4-branch+sol_rpath) Copyright (C) 2004 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:2797: $? = 0 configure:2804: gcc -v >&5 Reading specs from /usr/sfw/lib/gcc/sparc-sun-solaris2.10/3.4.3/specs Configured with: /sfw10/builds/build/sfw10-patch/usr/src/cmd/gcc/gcc-3.4.3/configure --prefix=/usr/sfw --with-as=/usr/ccs/bin/as --without-gnu-as --with-ld=/usr/ccs/bin/ld --without-gnu-ld --enable-languages=c,c++ --enable-shared Thread model: posix gcc version 3.4.3 (csl-sol210-3_4-branch+sol_rpath) configure:2807: $? = 0 configure:2814: gcc -V >&5 gcc: `-V' option must have argument configure:2817: $? = 1 configure:2840: checking for C compiler default output file name configure:2867: gcc conftest.c >&5 configure:2870: $? = 0 configure:2908: result: a.out configure:2925: checking whether the C compiler works configure:2935: ./a.out configure:2938: $? = 0 configure:2955: result: yes configure:2962: checking whether we are cross compiling configure:2964: result: no configure:2967: checking for suffix of executables configure:2974: gcc -o conftest conftest.c >&5 configure:2977: $? = 0 configure:3001: result: configure:3007: checking for suffix of object files configure:3033: gcc -c conftest.c >&5 configure:3036: $? = 0 configure:3059: result: o configure:3063: checking whether we are using the GNU C compiler configure:3092: gcc -c conftest.c >&5 configure:3098: $? = 0 configure:3115: result: yes configure:3120: checking whether gcc accepts -g configure:3150: gcc -c -g conftest.c >&5 configure:3156: $? = 0 configure:3255: result: yes configure:3272: checking for gcc option to accept ISO C89 configure:3346: gcc -c -g -O2 conftest.c >&5 configure:3352: $? = 0 configure:3375: result: none needed configure:3404: checking for style of include used by make configure:3432: result: GNU configure:3457: checking dependency style of gcc configure:3548: result: gcc3 configure:3621: checking for g++ configure:3637: found /usr/sfw/bin/g++ configure:3648: result: g++ configure:3679: checking for C++ compiler version configure:3686: g++ --version >&5 g++ (GCC) 3.4.3 (csl-sol210-3_4-branch+sol_rpath) Copyright (C) 2004 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3689: $? = 0 configure:3696: g++ -v >&5 Reading specs from /usr/sfw/lib/gcc/sparc-sun-solaris2.10/3.4.3/specs Configured with: /sfw10/builds/build/sfw10-patch/usr/src/cmd/gcc/gcc-3.4.3/configure --prefix=/usr/sfw --with-as=/usr/ccs/bin/as --without-gnu-as --with-ld=/usr/ccs/bin/ld --without-gnu-ld --enable-languages=c,c++ --enable-shared Thread model: posix gcc version 3.4.3 (csl-sol210-3_4-branch+sol_rpath) configure:3699: $? = 0 configure:3706: g++ -V >&5 g++: `-V' option must have argument configure:3709: $? = 1 configure:3712: checking whether we are using the GNU C++ compiler configure:3741: g++ -c conftest.cpp >&5 configure:3747: $? = 0 configure:3764: result: yes configure:3769: checking whether g++ accepts -g configure:3799: g++ -c -g conftest.cpp >&5 configure:3805: $? = 0 configure:3904: result: yes configure:3929: checking dependency style of g++ configure:4020: result: gcc3 configure:4081: checking for ranlib configure:4097: found /usr/ccs/bin/ranlib configure:4108: result: ranlib configure:4149: checking for a BSD-compatible install configure:4205: result: /opt/csw/bin/ginstall -c configure:4225: checking how to run the C preprocessor configure:4265: gcc -E conftest.c configure:4271: $? = 0 configure:4302: gcc -E conftest.c conftest.c:11:28: ac_nonexistent.h: No such file or directory configure:4308: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "clustalw" | #define PACKAGE_TARNAME "clustalw" | #define PACKAGE_VERSION "2.0.10" | #define PACKAGE_STRING "clustalw 2.0.10" | #define PACKAGE_BUGREPORT "clustalw@ucd.ie" | #define OS_UNIX 1 | #define PACKAGE "clustalw" | #define VERSION "2.0.10" | /* end confdefs.h. */ | #include configure:4341: result: gcc -E configure:4370: gcc -E conftest.c configure:4376: $? = 0 configure:4407: gcc -E conftest.c conftest.c:11:28: ac_nonexistent.h: No such file or directory configure:4413: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "clustalw" | #define PACKAGE_TARNAME "clustalw" | #define PACKAGE_VERSION "2.0.10" | #define PACKAGE_STRING "clustalw 2.0.10" | #define PACKAGE_BUGREPORT "clustalw@ucd.ie" | #define OS_UNIX 1 | #define PACKAGE "clustalw" | #define VERSION "2.0.10" | /* end confdefs.h. */ | #include configure:4451: checking for grep that handles long lines and -e configure:4525: result: /usr/sfw/bin/ggrep configure:4530: checking for egrep configure:4608: result: /usr/sfw/bin/ggrep -E configure:4613: checking for ANSI C header files configure:4643: gcc -c -g -O2 conftest.c >&5 configure:4649: $? = 0 configure:4748: gcc -o conftest -g -O2 conftest.c >&5 configure:4751: $? = 0 configure:4757: ./conftest configure:4760: $? = 0 configure:4777: result: yes configure:4804: checking for sys/types.h configure:4825: gcc -c -g -O2 conftest.c >&5 configure:4831: $? = 0 configure:4847: result: yes configure:4804: checking for sys/stat.h configure:4825: gcc -c -g -O2 conftest.c >&5 configure:4831: $? = 0 configure:4847: result: yes configure:4804: checking for stdlib.h configure:4825: gcc -c -g -O2 conftest.c >&5 configure:4831: $? = 0 configure:4847: result: yes configure:4804: checking for string.h configure:4825: gcc -c -g -O2 conftest.c >&5 configure:4831: $? = 0 configure:4847: result: yes configure:4804: checking for memory.h configure:4825: gcc -c -g -O2 conftest.c >&5 configure:4831: $? = 0 configure:4847: result: yes configure:4804: checking for strings.h configure:4825: gcc -c -g -O2 conftest.c >&5 configure:4831: $? = 0 configure:4847: result: yes configure:4804: checking for inttypes.h configure:4825: gcc -c -g -O2 conftest.c >&5 configure:4831: $? = 0 configure:4847: result: yes configure:4804: checking for stdint.h configure:4825: gcc -c -g -O2 conftest.c >&5 configure:4831: $? = 0 configure:4847: result: yes configure:4804: checking for unistd.h configure:4825: gcc -c -g -O2 conftest.c >&5 configure:4831: $? = 0 configure:4847: result: yes configure:4859: checking for stdbool.h that conforms to C99 configure:4952: gcc -c -g -O2 conftest.c >&5 In file included from conftest.c:22: /usr/include/stdbool.h:42:2: #error "Use of is valid only in a c99 compilation environment." conftest.c:42: error: syntax error before string constant conftest.c:42: error: syntax error before '}' token conftest.c:42: warning: data definition has no type or storage class conftest.c:44: error: `true' undeclared here (not in a function) conftest.c:45: error: `false' undeclared here (not in a function) conftest.c:46: error: `__bool_true_false_are_defined' undeclared here (not in a function) conftest.c:47: error: `bool' undeclared here (not in a function) conftest.c:47: error: syntax error before numeric constant conftest.c:48: warning: initialization makes integer from pointer without a cast conftest.c:48: warning: data definition has no type or storage class conftest.c:52: error: request for member `t' in something not a structure or union conftest.c:53: error: enumerator value for `j' not integer constant conftest.c:53: error: enumerator value for `k' not integer constant conftest.c:53: error: enumerator value for `l' not integer constant conftest.c:53: error: enumerator value for `m' not integer constant conftest.c:56: error: syntax error before numeric constant conftest.c:74: error: syntax error before numeric constant conftest.c: In function `main': conftest.c:90: error: `d' undeclared (first use in this function) conftest.c:90: error: (Each undeclared identifier is reported only once conftest.c:90: error: for each function it appears in.) conftest.c:91: error: `p' undeclared (first use in this function) conftest.c: At top level: conftest.c:44: error: storage size of `a' isn't known conftest.c:45: error: storage size of `b' isn't known conftest.c:46: error: storage size of `c' isn't known conftest.c:49: error: storage size of `f' isn't known conftest.c:50: error: storage size of `g' isn't known configure:4958: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "clustalw" | #define PACKAGE_TARNAME "clustalw" | #define PACKAGE_VERSION "2.0.10" | #define PACKAGE_STRING "clustalw 2.0.10" | #define PACKAGE_BUGREPORT "clustalw@ucd.ie" | #define OS_UNIX 1 | #define PACKAGE "clustalw" | #define VERSION "2.0.10" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | | #include | #ifndef bool | "error: bool is not defined" | #endif | #ifndef false | "error: false is not defined" | #endif | #if false | "error: false is not 0" | #endif | #ifndef true | "error: true is not defined" | #endif | #if true != 1 | "error: true is not 1" | #endif | #ifndef __bool_true_false_are_defined | "error: __bool_true_false_are_defined is not defined" | #endif | | struct s { _Bool s: 1; _Bool t; } s; | | char a[true == 1 ? 1 : -1]; | char b[false == 0 ? 1 : -1]; | char c[__bool_true_false_are_defined == 1 ? 1 : -1]; | char d[(bool) 0.5 == true ? 1 : -1]; | bool e = &s; | char f[(_Bool) 0.0 == false ? 1 : -1]; | char g[true]; | char h[sizeof (_Bool)]; | char i[sizeof s.t]; | enum { j = false, k = true, l = false * true, m = true * 256 }; | _Bool n[m]; | char o[sizeof n == m * sizeof n[0] ? 1 : -1]; | char p[-1 - (_Bool) 0 < 0 && -1 - (bool) 0 < 0 ? 1 : -1]; | # if defined __xlc__ || defined __GNUC__ | /* Catch a bug in IBM AIX xlc compiler version 6.0.0.0 | reported by James Lemley on 2005-10-05; see | http://lists.gnu.org/archive/html/bug-coreutils/2005-10/msg00086.html | This test is not quite right, since xlc is allowed to | reject this program, as the initializer for xlcbug is | not one of the forms that C requires support for. | However, doing the test right would require a runtime | test, and that would make cross-compilation harder. | Let us hope that IBM fixes the xlc bug, and also adds | support for this kind of constant expression. In the | meantime, this test will reject xlc, which is OK, since | our stdbool.h substitute should suffice. We also test | this with GCC, where it should work, to detect more | quickly whether someone messes up the test in the | future. */ | char digs[] = "0123456789"; | int xlcbug = 1 / (&(digs + 5)[-2 + (bool) 1] == &digs[4] ? 1 : -1); | # endif | /* Catch a bug in an HP-UX C compiler. See | http://gcc.gnu.org/ml/gcc-patches/2003-12/msg02303.html | http://lists.gnu.org/archive/html/bug-coreutils/2005-11/msg00161.html | */ | _Bool q = true; | _Bool *pq = &q; | | int | main () | { | | *pq |= q; | *pq |= ! q; | /* Refer to every declared value, to avoid compiler optimizations. */ | return (!a + !b + !c + !d + !e + !f + !g + !h + !i + !!j + !k + !!l | + !m + !n + !o + !p + !q + !pq); | | ; | return 0; | } configure:4973: result: no configure:4975: checking for _Bool configure:5005: gcc -c -g -O2 conftest.c >&5 configure:5011: $? = 0 configure:5026: result: yes configure:5045: checking for an ANSI C-conforming const configure:5120: gcc -c -g -O2 conftest.c >&5 configure:5126: $? = 0 configure:5141: result: yes configure:5151: checking for size_t configure:5181: gcc -c -g -O2 conftest.c >&5 configure:5187: $? = 0 configure:5202: result: yes configure:5232: checking for stdlib.h configure:5238: result: yes configure:5372: checking for GNU libc compatible malloc configure:5406: gcc -o conftest -g -O2 conftest.c >&5 configure:5409: $? = 0 configure:5415: ./conftest configure:5418: $? = 0 configure:5434: result: yes configure:5827: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by clustalw config.status 2.0.10, which was generated by GNU Autoconf 2.61. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on deneb config.status:662: creating Makefile config.status:662: creating m4/Makefile config.status:662: creating src/Makefile config.status:662: creating src/clustalw_version.h config.status:662: creating src/config.h config.status:939: executing depfiles commands ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=sparc-sun-solaris2.10 ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_malloc_0_nonnull=yes ac_cv_header_inttypes_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdbool_h=no ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_host=sparc-sun-solaris2.10 ac_cv_objext=o ac_cv_path_EGREP='/usr/sfw/bin/ggrep -E' ac_cv_path_GREP=/usr/sfw/bin/ggrep ac_cv_path_install='/opt/csw/bin/ginstall -c' ac_cv_path_mkdir=/opt/csw/bin/gmkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_make_make_set=yes ac_cv_target=sparc-sun-solaris2.10 ac_cv_type__Bool=yes ac_cv_type_size_t=yes am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/clustalw2/clustalw-2.0.10/missing --run aclocal-1.10' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='${SHELL} /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/clustalw2/clustalw-2.0.10/missing --run tar' AUTOCONF='${SHELL} /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/clustalw2/clustalw-2.0.10/missing --run autoconf' AUTOHEADER='${SHELL} /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/clustalw2/clustalw-2.0.10/missing --run autoheader' AUTOMAKE='${SHELL} /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/clustalw2/clustalw-2.0.10/missing --run automake-1.10' AWK='gawk' CC='gcc' CCDEPMODE='depmode=gcc3' CFLAGS='-g -O2' CLUSTALW_NAME='ClustalW' CLUSTALW_VERSION='2.0.10' CPP='gcc -E' CPPFLAGS='' CXX='g++' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/usr/sfw/bin/ggrep -E' EXEEXT='' GREP='/usr/sfw/bin/ggrep' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LDFLAGS='' LIBOBJS='' LIBS='' LTLIBOBJS='' MAKEINFO='${SHELL} /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/clustalw2/clustalw-2.0.10/missing --run makeinfo' OBJEXT='o' PACKAGE='clustalw' PACKAGE_BUGREPORT='clustalw@ucd.ie' PACKAGE_NAME='clustalw' PACKAGE_STRING='clustalw 2.0.10' PACKAGE_TARNAME='clustalw' PACKAGE_VERSION='2.0.10' PATH_SEPARATOR=':' RANLIB='ranlib' SET_MAKE='' SHELL='/bin/bash' STRIP='' VERSION='2.0.10' ac_ct_CC='gcc' ac_ct_CXX='g++' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__quote='' am__tar='${AMTAR} chof - "$$tardir"' am__untar='${AMTAR} xf -' bindir='${exec_prefix}/bin' build='sparc-sun-solaris2.10' build_alias='' build_cpu='sparc' build_os='solaris2.10' build_vendor='sun' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='sparc-sun-solaris2.10' host_alias='' host_cpu='sparc' host_os='solaris2.10' host_vendor='sun' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='$(SHELL) /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/clustalw2/clustalw-2.0.10/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='/opt/csw/bin/gmkdir -p' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr/local' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target='sparc-sun-solaris2.10' target_alias='' target_cpu='sparc' target_os='solaris2.10' target_vendor='sun' ## ----------- ## ## confdefs.h. ## ## ----------- ## #define PACKAGE_NAME "clustalw" #define PACKAGE_TARNAME "clustalw" #define PACKAGE_VERSION "2.0.10" #define PACKAGE_STRING "clustalw 2.0.10" #define PACKAGE_BUGREPORT "clustalw@ucd.ie" #define OS_UNIX 1 #define PACKAGE "clustalw" #define VERSION "2.0.10" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE__BOOL 1 #define HAVE_STDLIB_H 1 #define HAVE_MALLOC 1 configure: exit 0