Start: Thu Jun 10 15:22:29 CDT 2021 Pollux 1.0.2 Source compiled on Jan 25 2018 at 17:47:52. Considering argument: -i : number of input files is 1 Considering argument: -o : output directory is Trimmomatic2.pollux Considering argument: -k : k-mer size is 31 File name: 20080115s_1_1_S.fastq ERROR CORRECTION Creating read objects... Reading file: 20080115s_1_1_S.fastq Finished creating read objects! Constructing k-mers... Processing file 1/1... 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 55% 60% 65% 70% 75% 80% 85% 90% 95% 100% Preprocessing k-mers... 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 55% 60% 65% 70% 75% 80% 85% 90% 95% Removed 234904831 unique k-mers from the set of 295278992 total k-mers. Resizing... Finished resizing... Low k-mer count value was observed to be 51. Finished preprocessing k-mers! Finished constructing k-mers! Correcting reads... Correcting file 1/1... 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 55% 60% 65% 70% 75% 80% 85% 90% 95% 100% Corrected... Reads with Multiple Corrections: 259544 Substitution Corrections: 1077465 Single Insertion Corrections: 36419 Single Deletion Corrections: 54609 Total Homopolymer Corrections: 116587 Breakdown: < -10: 0 -10 : 24 -9 : 12 -8 : 24 -7 : 35 -6 : 140 -5 : 182 -4 : 907 -3 : 1818 -2 : 25658 -1 : 52130 1 : 32034 2 : 2351 3 : 350 4 : 320 5 : 78 6 : 66 7 : 53 8 : 48 9 : 31 10 : 42 > 10: 284 Total Insertions (Single + Homopolymer): 77725 Total Deletions (Single + Homopolymer): 169672 Finished correcting reads! Pollux 1.0.2 Source compiled on Jan 25 2018 at 17:47:52. Considering argument: -i : number of input files is 1 Considering argument: -o : output directory is Trimmomatic2.pollux Considering argument: -k : k-mer size is 31 File name: 20080115s_2_1_S.fastq ERROR CORRECTION Creating read objects... Reading file: 20080115s_2_1_S.fastq Finished creating read objects! Constructing k-mers... Processing file 1/1... 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 55% 60% 65% 70% 75% 80% 85% 90% 95% 100% Preprocessing k-mers... 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 55% 60% 65% 70% 75% 80% 85% 90% 95% Removed 230439600 unique k-mers from the set of 304804380 total k-mers. Resizing... Finished resizing... Low k-mer count value was observed to be 50. Finished preprocessing k-mers! Finished constructing k-mers! Correcting reads... Correcting file 1/1... 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 55% 60% 65% 70% 75% 80% 85% 90% 95% 100% Corrected... Reads with Multiple Corrections: 267819 Substitution Corrections: 1146936 Single Insertion Corrections: 38024 Single Deletion Corrections: 58011 Total Homopolymer Corrections: 127991 Breakdown: < -10: 7 -10 : 26 -9 : 8 -8 : 26 -7 : 46 -6 : 194 -5 : 187 -4 : 988 -3 : 1963 -2 : 27696 -1 : 59290 1 : 33596 2 : 2707 3 : 432 4 : 283 5 : 56 6 : 92 7 : 42 8 : 59 9 : 44 10 : 35 > 10: 214 Total Insertions (Single + Homopolymer): 81806 Total Deletions (Single + Homopolymer): 185495 Finished correcting reads! Pollux 1.0.2 Source compiled on Jan 25 2018 at 17:47:52. Considering argument: -i : number of input files is 1 Considering argument: -o : output directory is Trimmomatic2.pollux Considering argument: -k : k-mer size is 31 File name: 20080115s_3_1_S.fastq ERROR CORRECTION Creating read objects... Reading file: 20080115s_3_1_S.fastq Finished creating read objects! Constructing k-mers... Processing file 1/1... 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 55% 60% 65% 70% 75% 80% 85% 90% 95% 100% Preprocessing k-mers... 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 55% 60% 65% 70% 75% 80% 85% 90% 95% 100% Removed 226549342 unique k-mers from the set of 299679856 total k-mers. Resizing... Finished resizing... Low k-mer count value was observed to be 60. Finished preprocessing k-mers! Finished constructing k-mers! Correcting reads... Correcting file 1/1... 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 55% 60% 65% 70% 75% 80% 85% 90% 95% 100% Corrected... Reads with Multiple Corrections: 257033 Substitution Corrections: 1089028 Single Insertion Corrections: 37641 Single Deletion Corrections: 55511 Total Homopolymer Corrections: 124638 Breakdown: < -10: 0 -10 : 31 -9 : 11 -8 : 51 -7 : 54 -6 : 169 -5 : 191 -4 : 1387 -3 : 1743 -2 : 26616 -1 : 57405 1 : 33352 2 : 2467 3 : 371 4 : 309 5 : 59 6 : 43 7 : 45 8 : 49 9 : 39 10 : 30 > 10: 216 Total Insertions (Single + Homopolymer): 80187 Total Deletions (Single + Homopolymer): 180089 Finished correcting reads! Pollux 1.0.2 Source compiled on Jan 25 2018 at 17:47:52. Considering argument: -i : number of input files is 1 Considering argument: -o : output directory is Trimmomatic2.pollux Considering argument: -k : k-mer size is 31 File name: 20080115s_4_1_S.fastq ERROR CORRECTION Creating read objects... Reading file: 20080115s_4_1_S.fastq Finished creating read objects! Constructing k-mers... Processing file 1/1... 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 55% 60% 65% 70% 75% 80% 85% 90% 95% 100% Preprocessing k-mers... 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 55% 60% 65% 70% 75% 80% 85% 90% 95% 100% Removed 219771747 unique k-mers from the set of 299112613 total k-mers. Resizing... Finished resizing... Low k-mer count value was observed to be 66. Finished preprocessing k-mers! Finished constructing k-mers! Correcting reads... Correcting file 1/1... 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 55% 60% 65% 70% 75% 80% 85% 90% 95% 100% Corrected... Reads with Multiple Corrections: 257896 Substitution Corrections: 1102224 Single Insertion Corrections: 38169 Single Deletion Corrections: 56785 Total Homopolymer Corrections: 130709 Breakdown: < -10: 14 -10 : 21 -9 : 9 -8 : 41 -7 : 59 -6 : 304 -5 : 226 -4 : 1005 -3 : 2009 -2 : 28388 -1 : 60554 1 : 33995 2 : 2727 3 : 477 4 : 320 5 : 68 6 : 51 7 : 40 8 : 45 9 : 45 10 : 36 > 10: 275 Total Insertions (Single + Homopolymer): 82380 Total Deletions (Single + Homopolymer): 188148 Finished correcting reads! Finish: Thu Jun 10 17:15:37 CDT 2021