Start: Fri Jun 11 15:43:56 CDT 2021 15% Pollux 1.0.2 Source compiled on Jan 25 2018 at 17:47:52. Considering argument: -i : number of input files is 1 Considering argument: -o : output directory is ../readsU.Trimmomatic2.pollux3 Considering argument: -k : k-mer size is 31 File name: 20090202U.Trimmomatic2.fq ERROR CORRECTION Creating read objects... Reading file: 20090202U.Trimmomatic2.fq Finished creating read objects! Constructing k-mers... Processing file 1/1... 0% 5% 10% 15% 20% 20% 25% 30% 35% 40% 25% 45% 50% 55% 60% 65% 70% 30% 75% 80% 85% 90% 95% 35% 100% Preprocessing k-mers... 0% 40% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 55% 60% 45% 65% 70% 75% 80% 85% 90% 95% 100% 50% 55% Removed 160687100 unique k-mers from the set of 207175876 total k-mers. Resizing... Finished resizing... Low k-mer count value was observed to be 54. Finished preprocessing k-mers! Finished constructing k-mers! Correcting reads... Correcting file 1/1... 0% 5% 60% 10% 15% 20% 65% 25% 30% 70% 35% 40% 45% 75% 50% 55% 80% 60% 65% 85% 70% 75% 90% 80% 85% 95% 90% 95% 100% Corrected... Reads with Multiple Corrections: 283339 Substitution Corrections: 1102745 Single Insertion Corrections: 44923 Single Deletion Corrections: 57712 Total Homopolymer Corrections: 134867 Breakdown: < -10: 2 -10 : 5 -9 : 2 -8 : 5 -7 : 17 -6 : 65 -5 : 125 -4 : 833 -3 : 1950 -2 : 22260 -1 : 60995 1 : 44687 2 : 3350 3 : 295 4 : 110 5 : 27 6 : 9 7 : 12 8 : 12 9 : 8 10 : 6 > 10: 92 Total Insertions (Single + Homopolymer): 98136 Total Deletions (Single + Homopolymer): 173651 Finished correcting reads! Pollux 1.0.2 Source compiled on Jan 25 2018 at 17:47:52. Considering argument: -i : number of input files is 2 Considering argument: -o : output directory is ../reads.Trimmomatic.pollux3 Considering argument: -p : paired input Considering argument: -k : k-mer size is 31 File name: 20090202_8_1P.fq File name: 20090202_8_2P.fq ERROR CORRECTION Creating read objects... Reading file: 20090202_8_1P.fq Reading file: 20090202_8_2P.fq Finished creating read objects! Constructing k-mers... Processing file 1/2... 0% 100% 5% Corrected... Reads with Multiple Corrections: 131178 Substitution Corrections: 567086 Single Insertion Corrections: 19072 Single Deletion Corrections: 27397 Total Homopolymer Corrections: 60548 Breakdown: < -10: 0 -10 : 1 -9 : 1 -8 : 3 -7 : 4 -6 : 55 -5 : 67 -4 : 560 -3 : 979 -2 : 12988 -1 : 27512 1 : 16715 2 : 1213 3 : 188 4 : 129 5 : 22 6 : 14 7 : 19 8 : 6 9 : 8 10 : 8 > 10: 56 Total Insertions (Single + Homopolymer): 39820 Total Deletions (Single + Homopolymer): 86798 Finished correcting reads! Finish: Fri Jun 11 15:58:40 CDT 2021 10% 15% 20% 25% 30% 35% 40% 45% 50% 55% 60% 65% 70% 75% 80% 85% 90% 95% 100% Preprocessing k-mers... 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 55% 60% 65% 70% 75% 80% 85% 90% 95% 100% Removed 144705564 unique k-mers from the set of 183787914 total k-mers. Resizing... Finished resizing... Low k-mer count value was observed to be 51. Finished preprocessing k-mers! Processing file 2/2... 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 55% 60% 65% 70% 75% 80% 85% 90% 95% 100% Preprocessing k-mers... 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 55% 60% 65% 70% 75% 80% 85% 90% 95% 100% Removed 142001688 unique k-mers from the set of 207418692 total k-mers. Resizing... Finished resizing... Low k-mer count value was observed to be 44. Finished preprocessing k-mers! Finished constructing k-mers! Correcting reads... Correcting paired files. 0% 5% 10% 15% 20% 25% 30% 35% 40% 45% 50% 55% 60% 65% 70% 75% 80% 85% 90% 95% 100% Corrected... Reads with Multiple Corrections: 299234 Substitution Corrections: 1192291 Single Insertion Corrections: 47996 Single Deletion Corrections: 63614 Total Homopolymer Corrections: 147686 Breakdown: < -10: 4 -10 : 7 -9 : 3 -8 : 1 -7 : 18 -6 : 110 -5 : 144 -4 : 1058 -3 : 2071 -2 : 24181 -1 : 68122 1 : 47979 2 : 3232 3 : 377 4 : 161 5 : 23 6 : 20 7 : 13 8 : 14 9 : 12 10 : 16 > 10: 120 Total Insertions (Single + Homopolymer): 104920 Total Deletions (Single + Homopolymer): 192154 Finished correcting reads!