ENTRY A56379 #type complete TITLE ZP3 receptor precursor - human ORGANISM #formal_name Homo sapiens #common_name man DATE 08-Jul-1995 #sequence_revision 03-Aug-1995 #text_change 22-Mar-2002 ACCESSIONS A56379 REFERENCE A56379 !$#authors Burks, D.J.; Carballada, R.; Moore, H.D.M.; Saling, P.M. !$#journal Science (1995) 269:83-86 !$#title Interaction of a tyrosine kinase from human sperm with the !1zona pellucida at fertilization. !$#cross-references MUID:95327955; PMID:7541556 !$#accession A56379 !'##status preliminary !'##molecule_type mRNA !'##residues 1-600 ##label BUR !'##cross-references GB:L08961; NID:g897614; PIDN:AAC41766.1; !1PID:g897615 REFERENCE A59425 !$#authors Dowds, C. !$#citation Ph.D. thesis, Duke University (Department of Cell Biology, !1Cell and Molecular Biology Program), 2000 !$#description Cloning and characterization of members of the Ark subfamily !1of receptor tryosine kinases. !$#contents annotation; sequence is artifactual !$#note the DNA sequences used to generate this protein sequence !1were misconcatenations of a number of partial human c-mer !1cDNA clones, and moreover that no ZRK cDNA is present in any !1tissues examined CLASSIFICATION #superfamily unassigned Ser/Thr or Tyr-specific protein !1kinases; protein kinase homology KEYWORDS ATP; fertilization; sperm FEATURE !$240-551 #domain protein kinase homology #label KIN\ !$248-256 #region protein kinase ATP-binding motif SUMMARY #length 600 #molecular-weight 67874 #checksum 5480 SEQUENCE /// ENTRY A40176 #type complete TITLE xylanase (EC 3.2.1.-) - Thermoascus aurantiacus ORGANISM #formal_name Thermoascus aurantiacus DATE 31-Mar-2001 #sequence_revision 31-Mar-2001 #text_change 31-Mar-2001 ACCESSIONS A40176; S16922 REFERENCE A40176 !$#authors Srinivasa, B.R.; Vithayathil, P.J.; Roy, R.P.; Swaminathan, !1K.R. !$#journal J. Protein Chem. (1990) 9:337 !$#title Significance of structural homology of Thermoascus !1aurantiacus xylanase with the exoglucanase of Cellulomonas !1fimi. !$#accession A40176 !'##status preliminary !'##molecule_type protein !'##residues 1-269 ##label SRI REFERENCE S16922 !$#authors Srinivasa, B.R.; Swaminathan, K.R.; Ganapathy, C.; Roy, !1R.P.; Murthy, S.K.; Vithayathil, P.J. !$#journal Protein Seq. Data Anal. (1991) 4:15-20 !$#title The primary structure of xylanase from Thermoascus !1aurantiacus. !$#cross-references MUID:92020806; PMID:1924265 !$#accession S16922 !'##status preliminary !'##molecule_type protein !'##residues 1-269 ##label SR2 CLASSIFICATION #superfamily Streptomyces endo-1,4-beta-xylanase A homology KEYWORDS glycosidase; hydrolase FEATURE !$31-268 #domain Streptomyces endo-1,4-beta-xylanase A !8homology #label SXY SUMMARY #length 269 #molecular-weight 29744 #checksum 9724 SEQUENCE /// ENTRY A59353 #type complete TITLE tricholongin BI - fungus (Trichoderma longibrachiatum) ORGANISM #formal_name Trichoderma longibrachiatum DATE 20-Oct-2000 #sequence_revision 20-Oct-2000 #text_change 20-Oct-2000 ACCESSIONS A59353 REFERENCE A59353 !$#authors Rebuffat, S.; Prigent, Y.; Auvin-Guette, C.; Bodo, B. !$#journal Eur. J. Biochem. (1991) 201:661-674 !$#title Tricholongins BI and BII, 19-residue peptaibols from !1Trichoderma longibrachiatum: solution structure from !1two-dimensional NMR spectroscopy. !$#cross-references MUID:92037622; PMID:1935961 !$#accession A59353 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-19 ##label REB KEYWORDS antibacterial; antifungal; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,4,5,7,8,9,12,15, !$16 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$19 #modified_site leucinol #status experimental SUMMARY #length 19 #molecular-weight 2105 #checksum 6031 SEQUENCE /// ENTRY S33798 #type complete TITLE FUS/CHOP mutant fusion protein - human ALTERNATE_NAMES TLS/CHOP mutant fusion protein ORGANISM #formal_name Homo sapiens #common_name man DATE 22-Nov-1993 #sequence_revision 30-Nov-1995 #text_change 30-Jun-2001 ACCESSIONS S33798; S36158 REFERENCE S33798 !$#authors Crozat, A.; Aman, P.; Mandahl, N.; Ron, D. !$#journal Nature (1993) 363:640-644 !$#title Fusion of CHOP to a novel RNA-binding protein in human !1myxoid liposarcoma. !$#cross-references MUID:93288139; PMID:8510758 !$#accession S33798 !'##molecule_type mRNA !'##residues 1-462 ##label CRO !'##cross-references GB:S62138; NID:g386158; PIDN:AAB27103.1; !1PID:g386159 REFERENCE S36157 !$#authors Rabbitts, T.H.; Forster, A.; Larson, R.; Nathan, P. !$#journal Nature Genet. (1993) 4:175-180 !$#title Fusion of the dominant negative transcription regulator CHOP !1with a novel gene FUS by translocation t(12;16) in malignant !1liposarcoma. !$#cross-references MUID:93350637; PMID:7503811 !$#accession S36158 !'##molecule_type mRNA !'##residues 1-462 ##label RAB !'##cross-references EMBL:X71427; NID:g395919; PIDN:CAA50558.1; !1PID:g4210364 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene GADD153/FUS !$#map_position 12q13/16p11 !$#note TLS is a synonym for GDB:FUS KEYWORDS fusion protein SUMMARY #length 462 #molecular-weight 48510 #checksum 5213 SEQUENCE /// ENTRY T43873 #type complete TITLE catalase (EC 1.11.1.6) [imported] - synthetic ORGANISM #formal_name synthetic #note cat gene engineered and expressed in Bacillus stearothermophilus DATE 24-Mar-2000 #sequence_revision 24-Mar-2000 #text_change 23-Mar-2001 ACCESSIONS T43873 REFERENCE Z22644 !$#authors Matsuura, T.; Miyai, K.; Trakulnaleaamsai, S.; Yomo, T.; !1Shima, Y.; Miki, S.; Yamamoto, K.; Urabe, I. !$#journal Nat. Biotechnol. (1998) 17:58-61 !$#title Evolutionary molecular engineering by random elongation !1mutagenesis. !$#cross-references MUID:99116998; PMID:9920270 !$#accession T43873 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-751 ##label MAT !'##cross-references EMBL:AB020075; NID:g4140057; PIDN:BAA36987.1; !1PID:g4140058 COMMENT For the wild-type sequence, see PIR:JS0520. GENETICS !$#gene cat KEYWORDS oxidoreductase SUMMARY #length 751 #molecular-weight 84737 #checksum 4532 SEQUENCE /// ENTRY A32902 #type fragment TITLE GMP reductase / glucose-6-phosphate 1-dehydrogenase fusion protein - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 10-Sep-1998 #sequence_revision 10-Sep-1998 #text_change 30-Jun-2001 ACCESSIONS A32902 REFERENCE A32902 !$#authors Kanno, H.; Huang, I.Y.; Kan, Y.W.; Yoshida, A. !$#journal Cell (1989) 58:595-606 !$#title Two structural genes on different chromosomes are required !1for encoding the major subunit of human red cell !1glucose-6-phosphate dehydrogenase. !$#cross-references MUID:89336791; PMID:2758468 !$#accession A32902 !'##molecule_type protein !'##residues 1-21 ##label KAN REFERENCE A55177 !$#authors Yoshida, A.; Kan, Y.W. !$#journal Cell (1990) 62:11-12 !$#title Origin of "fused" glucose-6-phosphate dehydrogenase. !$#cross-references MUID:90304899; PMID:1694726 !$#contents annotation COMMENT This peptide was sequenced from a fragment of a chimeric !1protein produced from GMP reductase (see PIR:B32902) and !1glucose-6-phosphate 1-dehydrogenase (see PIR:DEHUG6). The !1chimeric protein was later shown to be an artifact of !1purification and not a natural component of erythrocytes. KEYWORDS fusion protein FEATURE !$1-13 #region GMP reductase\ !$14-21 #region glucose-6-phosphate 1-dehydrogenase SUMMARY #length 21 #checksum 7001 SEQUENCE /// ENTRY JQ2293 #type complete TITLE transcription enhancer factor psi EF1 chain A processed pseudogene - bovine ORGANISM #formal_name Bos primigenius taurus #common_name cattle DATE 30-Sep-1993 #sequence_revision 30-Nov-1995 #text_change 30-Jun-2001 ACCESSIONS JQ2293 REFERENCE JQ2292 !$#authors Ozer, J.; Chalkley, R.; Sealy, L. !$#journal Gene (1993) 124:223-230 !$#title Isolation of the CCAAT transcription factor subunit EFIA !1cDNA and a potentially functional EFIA processed pseudogene !1from Bos taurus: Insights into the evolution of the EFIA/ !1dbpB/YB-1 gene family. !$#cross-references MUID:93185927; PMID:8444345 !$#accession JQ2293 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-140 ##label OZE !'##cross-references GB:M95794 COMMENT This protein is essential for Rous sarcoma viral long !1terminal repeat enhancer function and is a multi-subunit !1trans-acting complex which binds to CCAAT box cis-elements. GENETICS !$#gene psiEFIA KEYWORDS pseudogene SUMMARY #length 140 #molecular-weight 14742 #checksum 385 SEQUENCE /// ENTRY JH0807 #type complete TITLE ribosomal protein S12 (pHSG670) - synthetic ORGANISM #formal_name synthetic #note cloning vector pHSG683 strA gene engineered and expressed in Escherichia coli DATE 24-Feb-1994 #sequence_revision 16-Aug-1996 #text_change 30-Jun-2001 ACCESSIONS JH0807 REFERENCE JH0807 !$#authors Toba-Minowa, M.; Hashimoto-Gotoh, T. !$#journal Gene (1992) 121:25-33 !$#title Characterization of the spontaneous elimination of !1streptomycin sensitivity (Sm-s) on high-copy-number !1plasmids: Sm-s-enforcement cloning vectors with a synthetic !1rpsL gene. !$#cross-references MUID:93051359; PMID:1427096 !$#accession JH0807 !'##molecule_type DNA !'##residues 1-124 ##label TOB !'##note the authors translated the codon GTG for residue 33 as Ile KEYWORDS ribosome SUMMARY #length 124 #molecular-weight 13837 #checksum 9811 SEQUENCE /// ENTRY JH0809 #type complete TITLE ribosomal protein S12 (pHSG683) - synthetic ORGANISM #formal_name synthetic #note cloning vector pHSG683 strA gene engineered and expressed in Escherichia coli DATE 24-Feb-1994 #sequence_revision 16-Aug-1996 #text_change 30-Jun-2001 ACCESSIONS JH0809 REFERENCE JH0807 !$#authors Toba-Minowa, M.; Hashimoto-Gotoh, T. !$#journal Gene (1992) 121:25-33 !$#title Characterization of the spontaneous elimination of !1streptomycin sensitivity (Sm-s) on high-copy-number !1plasmids: Sm-s-enforcement cloning vectors with a synthetic !1rpsL gene. !$#cross-references MUID:93051359; PMID:1427096 !$#accession JH0809 !'##molecule_type DNA !'##residues 1-124 ##label TOB !'##cross-references DDBJ:D10670; NID:g220970 KEYWORDS ribosome FEATURE !$29 #region opal stop codon SUMMARY #length 124 #molecular-weight 13904 #checksum 9713 SEQUENCE /// ENTRY S58729 #type complete TITLE hypothetical protein N2485 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 16-Feb-1996 #sequence_revision 05-Sep-1996 #text_change 30-Jun-2001 ACCESSIONS S58729 REFERENCE S58711 !$#authors Bergez, P.; Doignon, F.; Crouzet, M. !$#journal Yeast (1995) 11:967-974 !$#title The sequence of a 44 420 bp fragment located on the left arm !1of chromosome XIV from Saccharomyces cerevisiae. !$#cross-references MUID:96021608; PMID:8533472 !$#accession S58729 !'##status nucleic acid sequence not shown; translation not shown; !1conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-237 ##label BER !'##cross-references EMBL:U12141; NID:g1314216 !'##note the nucleotide sequence was submitted to the EMBL Data Library, !1July 1994 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 14L KEYWORDS pseudogene SUMMARY #length 237 #molecular-weight 27854 #checksum 3370 SEQUENCE /// ENTRY S40664 #type fragment TITLE INS150A/INS150B mutant fusion protein - Escherichia coli (fragment) ORGANISM #formal_name Escherichia coli DATE 19-May-1994 #sequence_revision 20-Mar-1997 #text_change 30-Jun-2001 ACCESSIONS S40664 REFERENCE S40663 !$#authors Voegele, K.; Schwartz, E.; Welz, C.; Schiltz, E.; Rak, B. !$#journal Nucleic Acids Res. (1991) 19:4377-4385 !$#title High-level ribosomal frameshifting directs the synthesis of !1IS150 gene products. !$#cross-references MUID:91360335; PMID:1653413 !$#accession S40664 !'##molecule_type protein !'##residues 1-18 ##label VOE KEYWORDS fusion protein FEATURE !$1-5 #region insertion sequence IS150A\ !$6-18 #region insertion sequence IS150B SUMMARY #length 18 #checksum 3344 SEQUENCE /// ENTRY S58727 #type complete TITLE hypothetical protein orf YNL060c - yeast (Saccharomyces cerevisiae) ALTERNATE_NAMES hypothetical protein N2429; hypothetical protein YNL2429 ORGANISM #formal_name Saccharomyces cerevisiae DATE 16-Feb-1996 #sequence_revision 05-Sep-1996 #text_change 31-Dec-2000 ACCESSIONS S58727; S62988 REFERENCE S58711 !$#authors Bergez, P.; Doignon, F.; Crouzet, M. !$#journal Yeast (1995) 11:967-974 !$#title The sequence of a 44 420 bp fragment located on the left arm !1of chromosome XIV from Saccharomyces cerevisiae. !$#cross-references MUID:96021608; PMID:8533472 !$#accession S58727 !'##status nucleic acid sequence not shown; translation not shown; !1conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-100 ##label BER !'##cross-references EMBL:U12141; NID:g1314216; PIDN:AAA99651.1; !1PID:g1098484 !'##note the nucleotide sequence was submitted to the EMBL Data Library, !1July 1994 REFERENCE S62975 !$#authors Bergez, P.; Doignon, F.; Crouzet, M. !$#submission submitted to the Protein Sequence Database, April 1996 !$#accession S62988 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-100 ##label BEW !'##cross-references EMBL:Z71337; NID:g1301933; PID:g1301935 !'##experimental_source strain S288C COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 14L KEYWORDS pseudogene FEATURE !$27-43 #domain transmembrane #status predicted #label TM1\ !$57-73 #domain transmembrane #status predicted #label TM2 SUMMARY #length 100 #molecular-weight 12119 #checksum 9846 SEQUENCE /// ENTRY T43874 #type complete TITLE catalase (EC 1.11.1.6) [imported] - synthetic ORGANISM #formal_name synthetic #note cat gene engineered and expressed in Bacillus stearothermophilus DATE 24-Mar-2000 #sequence_revision 24-Mar-2000 #text_change 23-Mar-2001 ACCESSIONS T43874 REFERENCE Z22644 !$#authors Matsuura, T.; Miyai, K.; Trakulnaleaamsai, S.; Yomo, T.; !1Shima, Y.; Miki, S.; Yamamoto, K.; Urabe, I. !$#journal Nat. Biotechnol. (1998) 17:58-61 !$#title Evolutionary molecular engineering by random elongation !1mutagenesis. !$#cross-references MUID:99116998; PMID:9920270 !$#accession T43874 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-751 ##label MAT !'##cross-references EMBL:AB020079; NID:g4140065; PIDN:BAA36991.1; !1PID:g4140066 COMMENT For the wild-type sequence, see PIR:JS0520. GENETICS !$#gene cat KEYWORDS oxidoreductase SUMMARY #length 751 #molecular-weight 84683 #checksum 4515 SEQUENCE /// ENTRY T43877 #type complete TITLE catalase (EC 1.11.1.6) [imported] - synthetic ORGANISM #formal_name synthetic #note cat gene engineered and expressed in Bacillus stearothermophilus DATE 24-Mar-2000 #sequence_revision 24-Mar-2000 #text_change 23-Mar-2001 ACCESSIONS T43877 REFERENCE Z22644 !$#authors Matsuura, T.; Miyai, K.; Trakulnaleaamsai, S.; Yomo, T.; !1Shima, Y.; Miki, S.; Yamamoto, K.; Urabe, I. !$#journal Nat. Biotechnol. (1998) 17:58-61 !$#title Evolutionary molecular engineering by random elongation !1mutagenesis. !$#cross-references MUID:99116998; PMID:9920270 !$#accession T43877 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-752 ##label MAT !'##cross-references EMBL:AB020089; NID:g4140085; PIDN:BAA37001.1; !1PID:g4140086 COMMENT For the wild-type sequence, see PIR:JS0520. GENETICS !$#gene cat KEYWORDS oxidoreductase SUMMARY #length 752 #molecular-weight 84844 #checksum 5215 SEQUENCE /// ENTRY T43878 #type complete TITLE catalase (EC 1.11.1.6) [imported] - synthetic ORGANISM #formal_name synthetic #note cat gene engineered and expressed in Bacillus stearothermophilus DATE 24-Mar-2000 #sequence_revision 24-Mar-2000 #text_change 23-Mar-2001 ACCESSIONS T43878 REFERENCE Z22644 !$#authors Matsuura, T.; Miyai, K.; Trakulnaleaamsai, S.; Yomo, T.; !1Shima, Y.; Miki, S.; Yamamoto, K.; Urabe, I. !$#journal Nat. Biotechnol. (1998) 17:58-61 !$#title Evolutionary molecular engineering by random elongation !1mutagenesis. !$#cross-references MUID:99116998; PMID:9920270 !$#accession T43878 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-751 ##label MAT !'##cross-references EMBL:AB020090; NID:g4140087; PIDN:BAA37002.1; !1PID:g4140088 COMMENT For the wild-type sequence, see PIR:JS0520. GENETICS !$#gene cat KEYWORDS oxidoreductase SUMMARY #length 751 #molecular-weight 84803 #checksum 4565 SEQUENCE /// ENTRY T43880 #type complete TITLE catalase (EC 1.11.1.6) [imported] - synthetic ORGANISM #formal_name synthetic #note cat gene engineered and expressed in Bacillus stearothermophilus DATE 24-Mar-2000 #sequence_revision 24-Mar-2000 #text_change 23-Mar-2001 ACCESSIONS T43880 REFERENCE Z22644 !$#authors Matsuura, T.; Miyai, K.; Trakulnaleaamsai, S.; Yomo, T.; !1Shima, Y.; Miki, S.; Yamamoto, K.; Urabe, I. !$#journal Nat. Biotechnol. (1998) 17:58-61 !$#title Evolutionary molecular engineering by random elongation !1mutagenesis. !$#cross-references MUID:99116998; PMID:9920270 !$#accession T43880 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-751 ##label MAT !'##cross-references EMBL:AB020091; NID:g4140089; PIDN:BAA37003.1; !1PID:g4140090 COMMENT For the wild-type sequence, see PIR:JS0520. GENETICS !$#gene cat KEYWORDS oxidoreductase SUMMARY #length 751 #molecular-weight 84748 #checksum 4059 SEQUENCE /// ENTRY T43881 #type complete TITLE catalase (EC 1.11.1.6) [imported] - synthetic ORGANISM #formal_name synthetic #note cat gene engineered and expressed in Bacillus stearothermophilus DATE 24-Mar-2000 #sequence_revision 24-Mar-2000 #text_change 23-Mar-2001 ACCESSIONS T43881 REFERENCE Z22644 !$#authors Matsuura, T.; Miyai, K.; Trakulnaleaamsai, S.; Yomo, T.; !1Shima, Y.; Miki, S.; Yamamoto, K.; Urabe, I. !$#journal Nat. Biotechnol. (1998) 17:58-61 !$#title Evolutionary molecular engineering by random elongation !1mutagenesis. !$#cross-references MUID:99116998; PMID:9920270 !$#accession T43881 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-751 ##label MAT !'##cross-references EMBL:AB020099; NID:g4140105; PIDN:BAA37011.1; !1PID:g4140106 COMMENT For the wild-type sequence, see PIR:JS0520. GENETICS !$#gene cat KEYWORDS oxidoreductase SUMMARY #length 751 #molecular-weight 84858 #checksum 5861 SEQUENCE /// ENTRY T43882 #type complete TITLE catalase (EC 1.11.1.6) [imported] - synthetic ORGANISM #formal_name synthetic #note cat gene engineered and expressed in Bacillus stearothermophilus DATE 24-Mar-2000 #sequence_revision 24-Mar-2000 #text_change 23-Mar-2001 ACCESSIONS T43882 REFERENCE Z22644 !$#authors Matsuura, T.; Miyai, K.; Trakulnaleaamsai, S.; Yomo, T.; !1Shima, Y.; Miki, S.; Yamamoto, K.; Urabe, I. !$#journal Nat. Biotechnol. (1998) 17:58-61 !$#title Evolutionary molecular engineering by random elongation !1mutagenesis. !$#cross-references MUID:99116998; PMID:9920270 !$#accession T43882 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-753 ##label MAT !'##cross-references EMBL:AB020119; NID:g4140145; PIDN:BAA37031.1; !1PID:g4140146 COMMENT For the wild-type sequence, see PIR:JS0520. GENETICS !$#gene cat KEYWORDS oxidoreductase SUMMARY #length 753 #molecular-weight 84832 #checksum 5967 SEQUENCE /// ENTRY I59347 #type complete TITLE hypothetical glutathione transporter, sinusoidal - rat ORGANISM #formal_name Rattus norvegicus #common_name Norway rat DATE 12-Mar-1999 #sequence_revision 12-Mar-1999 #text_change 31-Dec-2000 ACCESSIONS I59347 REFERENCE I59347 !$#authors Yi, J.R.; Lu, S.; Fernandez-Checa, J.; Kaplowitz, N. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1995) 92:1495-1499 !$#title Expression cloning of the cDNA for a polypeptide associated !1with rat hepatic sinusoidal reduced glutathione transport: !1characteristics and comparison with the canalicular !1transporter. !$#cross-references MUID:95183492; PMID:7878007 !$#accession I59347 !'##status translated from GB/EMBL/DDBJ !'##molecule_type mRNA !'##residues 1-353 ##label YIJ !'##cross-references EMBL:U16358; NID:g687585; PIDN:AAA62498.1; !1PID:g687586 COMMENT This sequence is very similar to two adjoining hypothetical !1sequences from Escherichia coli (see PIR:F64962 and !1PIR:E64962). The submission and accession were withdrawn !1from GenBank. GENETICS !$#gene RsgshT SUMMARY #length 353 #molecular-weight 39970 #checksum 1438 SEQUENCE /// ENTRY S52396 #type complete TITLE photosystem II protein D2 mutant alba-4 - garden snapdragon ORGANISM #formal_name Antirrhinum majus #common_name garden snapdragon DATE 08-May-1995 #sequence_revision 15-Feb-1996 #text_change 23-Mar-2001 ACCESSIONS S52396 REFERENCE S52394 !$#authors Schaffner, C.; Lausch, H.; Hagemann, R. !$#submission submitted to the EMBL Data Library, January 1995 !$#description Detection of point mutations in chloroplast genes of !1Antirrhinum majus L. by SSCP analysis. 1. Identification of !1a point mutation in the psaB gene of a photosystem I !1plastome mutant. !$#accession S52396 !'##molecule_type DNA !'##residues 1-353 ##label SCH !'##cross-references EMBL:X84154 !'##note mutant sequence; see S52397 GENETICS !$#gene psaD SUMMARY #length 353 #molecular-weight 39525 #checksum 6062 SEQUENCE /// ENTRY T09191 #type fragment TITLE hypothetical protein O26326 - Escherichia coli (fragment) ORGANISM #formal_name Escherichia coli DATE 22-Oct-1999 #sequence_revision 22-Oct-1999 #text_change 31-Dec-2000 ACCESSIONS T09191 REFERENCE Z16603 !$#authors Aiba, H.; Baba, T.; Fujita, K.; Hayashi, K.; Inada, T.; !1Isono, K.; Itoh, T.; Kasai, H.; Kashimoto, K.; Kimura, S.; !1Kitakawa, M.; Kitagawa, M.; Makino, K.; Miki, T.; Mizobuchi, !1K.; Mori, H.; Mori, T.; Motomura, K.; Nakade, S.; Nakamura, !1Y.; Nashimoto, H.; Nishio, Y.; Oshima, T.; Saito, N.; !1Sampei, G.; Seki, Y.; Sivasundaram, S.; Tagami, H.; Takeda, !1J.; Takemoto, K.; Takeuchi, Y.; Wada, C.; Yamamoto, Y.; !1Horiuchi, T. !$#journal DNA Res. (1996) 3:363-377 !$#title A 570-kb DNA sequence of the Escherichia coli K-12 genome !1corresponding to the 28.0-40.1 min region on the linkage !1map. !$#cross-references MUID:97251357; PMID:9097039 !$#accession T09191 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-62 ##label AIB !'##cross-references EMBL:D90774; GB:AB001340; NID:g1742217; !1PIDN:BAA14968.1; PID:g1742235 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. SUMMARY #length 62 #checksum 5412 SEQUENCE /// ENTRY T06705 #type complete TITLE hypothetical pseudogene T29H11.110 - Arabidopsis thaliana ORGANISM #formal_name Arabidopsis thaliana #common_name mouse-ear cress DATE 19-May-2000 #sequence_revision 19-May-2000 #text_change 08-Dec-2000 ACCESSIONS T06705 REFERENCE Z15793 !$#authors Quetier, F.; Choisne, N.; Robert, C.; Brottier, P.; Wincker, !1P.; Cattolico, L.; Artiguenave, F.; Saurin, W.; Weissenbach, !1J.; Salanoubat, M.; Mewes, H.W.; Mayer, K.F.X.; Schueller, !1C. !$#submission submitted to the Protein Sequence Database, April 1999 !$#accession T06705 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-96 ##label QUE !'##cross-references EMBL:AL049659; NID:g4678340; PIDN:CAB41161.1; !1PID:g4678351; GSPDB:GN00061; ATSP:T29H11.110 !'##experimental_source cultivar Columbia; BAC clone T29H11 GENETICS !$#gene ATSP:T29H11.110 !$#map_position 3 !$#introns 2/1 KEYWORDS pseudogene SUMMARY #length 96 #molecular-weight 10888 #checksum 4133 SEQUENCE /// ENTRY JC5705 #type complete TITLE alpha-amylase inhibitor 0.19 - synthetic ORGANISM #formal_name synthetic #note Triticum aestivum (common wheat) gene engineered and expressed in Escherichia coli DATE 03-Sep-1998 #sequence_revision 03-Sep-1998 #text_change 08-Dec-2000 ACCESSIONS JC5705 REFERENCE JC5705 !$#authors Okuda, M.; Satoh, T.; Sakurai, N.; Shibuya, K.; Kaji, H.; !1Samejima, T. !$#journal J. Biochem. (1997) 122:918-926 !$#title Overexpression in Escherichia coli of chemically synthesized !1gene for active 0.19 alpha-amylase inhibitor from wheat !1kernel. !$#cross-references MUID:98104043; PMID:9443806 !$#accession JC5705 !'##molecule_type DNA !'##residues 1-125 ##label OKU !'##cross-references DDBJ:AB003682; NID:g2575815; PIDN:BAA20139.1; !1PID:g2116581 COMMENT The sequence from wheat (see PIR:A01324) has signal and !1propeptide sequences not included in this synthetic !1sequence. SUMMARY #length 125 #molecular-weight 13468 #checksum 3534 SEQUENCE /// ENTRY S14943 #type complete TITLE UGA3 leader peptide - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 07-Aug-1998 #sequence_revision 07-Aug-1998 #text_change 08-Dec-2000 ACCESSIONS S14943; A59281 REFERENCE S14943 !$#authors Andre, B. !$#journal Mol. Gen. Genet. (1990) 220:269-276 !$#title The UGA3 gene regulating the GABA catabolic pathway in !1Saccharomyces cerevisiae codes for a putative zinc-finger !1protein acting on RNA amount. !$#cross-references MUID:90220499; PMID:2109179 !$#accession S14943 !'##status translation not shown !'##molecule_type DNA !'##residues 1-10 ##label AND1 !'##cross-references EMBL:X51664; NID:g4747 !$#accession A59281 !'##status translation not shown !'##molecule_type DNA !'##residues 'HVWMPRKQSFL' ##label AND2 !'##cross-references EMBL:X51664; NID:g4747; PIDN:CAA35975.1; !1PID:g1326024 !'##note erroneous translation for authors' feature in GenBank entry !1SCUGA3G, release 103.0 SUMMARY #length 10 #molecular-weight 1218 #checksum 4175 SEQUENCE /// ENTRY T07533 #type complete TITLE probable photosystem II D2 protein pseudogene - Japanese black pine chloroplast ORGANISM #formal_name chloroplast Pinus thunbergiana #common_name Japanese black pine DATE 13-Aug-1999 #sequence_revision 13-Aug-1999 #text_change 08-Dec-2000 ACCESSIONS T07533 REFERENCE Z16030 !$#authors Wakasugi, T.; Tsudzuki, J.; Ito, S.; Nakashima, K.; !1Tsudzuki, T.; Sugiura, M. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1994) 91:9794-9798 !$#title Loss of all ndh genes as determined by sequencing the entire !1chloroplast genome of the black pine Pinus thunbergii. !$#cross-references MUID:95024047; PMID:7937893 !$#accession T07533 !'##status translated from GB/EMBL/DDBJ; conceptual translation of !1pseudogene !'##molecule_type DNA !'##residues 1-26 ##label WAK !'##cross-references EMBL:D17510; NID:g529643; PIDN:BAA04409.1; !1PID:g1262694 GENETICS !$#genome chloroplast KEYWORDS chloroplast; pseudogene SUMMARY #length 26 #molecular-weight 2838 #checksum 6016 SEQUENCE /// ENTRY I60307 #type complete TITLE beta-galactosidase (EC 3.2.1.23) lacZ - synthetic ORGANISM #formal_name synthetic DATE 05-Jun-1996 #sequence_revision 21-Aug-1997 #text_change 08-Dec-2000 ACCESSIONS I60307 REFERENCE I60307 !$#authors Hashimoto-Gotoh, T.; Mizuno, T.; Ogasahara, Y.; Nakagawa, M. !$#journal Gene (1995) 152:271-275 !$#title An oligodeoxyribonucleotide-directed dual amber method for !1site-directed mutagenesis. !$#cross-references MUID:95137402; PMID:7835714 !$#accession I60307 !'##status nucleic acid sequence not shown; translation not shown; !1translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-80 ##label HAS !'##cross-references GB:D29828; NID:g1333681; PIDN:BAA06204.1; !1PID:g992923 !'##experimental_source cloning vector pKF16c engineered and expressed !1in Escherichia coli KEYWORDS glycosidase; hydrolase SUMMARY #length 80 #molecular-weight 8818 #checksum 8299 SEQUENCE /// ENTRY T43640 #type fragment TITLE superoxide dismutase (EC 1.15.1.1) (Cu-Zn) - synthetic (fragment) ORGANISM #formal_name synthetic #note human SOD1 and SOD3 genes engineered and expressed in Schizosaccharomyces pombe DATE 20-Apr-2000 #sequence_revision 20-Apr-2000 #text_change 08-Dec-2000 ACCESSIONS T43640 REFERENCE Z22590 !$#authors Inoue, M.; Watanabe, N.; Matsuno, K.; Sasaki, J.; Tanaka, !1Y.; Hatanaka-Sawai, H.; Amachi, T. !$#journal J. Biol. Chem. (1991) 266:16409-16414 !$#title Expression of a hybrid Cu/Zn-type superoxide dismutase which !1has high affinity for heparin-like proteoglycans on vascular !1endothelial cells. !$#cross-references MUID:91358420; PMID:1885572 !$#accession T43640 !'##status translated from GB/EMBL/DDBJ !'##molecule_type mRNA !'##residues 1-179 ##label INO !'##cross-references EMBL:D90358; NID:g218563; PIDN:BAA14373.1; !1PID:g218564 !'##experimental_source strain EH13-15 !'##note the engineered initiator codon and the termination codon are !1not shown COMMENT For the original sequences, see PIR:DSHUCZ and PIR:DSHUEC. KEYWORDS copper; metalloprotein; oxidoreductase; zinc FEATURE !$1-151 #region SOD1 gene derived\ !$153-179 #region SOD3 gene derived\ !$46,48,63,120 #binding_site copper (His) #status predicted\ !$57-146 #disulfide_bonds #status predicted\ !$63,71,80,83 #binding_site zinc (His, His, His, Asp) #status !8predicted\ !$143 #active_site Arg #status predicted SUMMARY #length 179 #checksum 4196 SEQUENCE /// ENTRY S41977 #type complete TITLE kanamycin kinase (EC 2.7.1.95) II - synthetic ALTERNATE_NAMES neomycin phosphotransferase ORGANISM #formal_name synthetic DATE 25-Dec-1994 #sequence_revision 22-Aug-1996 #text_change 31-Dec-2000 ACCESSIONS S41977 REFERENCE A57991 !$#authors Kaestner, K.H.; Montoliu, L.; Kern, H.; Thulke, M.; Schutz, !1G. !$#journal Gene (1994) 148:67-70 !$#title Universal beta-galactosidase cloning vectors for promoter !1analysis and gene targeting. !$#cross-references MUID:95011660; PMID:7926839 !$#accession S41977 !'##status not compared with conceptual translation !'##molecule_type DNA !'##residues 1-264 ##label KAE !'##cross-references EMBL:X76683; NID:g453625; PIDN:453626; PID:g453626 !'##note submitted to the EMBL Data Library, December 1993 KEYWORDS phosphotransferase SUMMARY #length 264 #molecular-weight 28839 #checksum 5378 SEQUENCE /// ENTRY A01640 #type complete TITLE hypothetical protein D-26 (MAT a2 5' region) - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 31-Dec-1990 #sequence_revision 05-Sep-1996 #text_change 08-Dec-2000 ACCESSIONS A01640 REFERENCE A90815 !$#authors Astell, C.R.; Ahlstrom-Jonasson, L.; Smith, M.; Tatchell, !1K.; Nasmyth, K.A.; Hall, B.D. !$#journal Cell (1981) 27:15-23 !$#title The sequence of the DNAs coding for the mating-type loci of !1Saccharomyces cerevisiae. !$#cross-references MUID:82115330; PMID:7034964 !$#accession A01640 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-26 ##label AST !'##cross-references EMBL:V01313; GB:J01334; NID:g3892; PIDN:CAA24621.1; !1PID:g1208525 COMMENT This is the hypothetical translation from a different !1reading frame of the mating hormone a2 gene. There is no !1evidence that this sequence is expressed. GENETICS !$#map_position 3R KEYWORDS pseudogene SUMMARY #length 26 #molecular-weight 3084 #checksum 6657 SEQUENCE /// ENTRY I70119 #type complete TITLE processed pseudogene ash-psi - rat ORGANISM #formal_name Rattus norvegicus #common_name Norway rat DATE 02-Jul-1996 #sequence_revision 17-Mar-1997 #text_change 08-Dec-2000 ACCESSIONS I70119 REFERENCE I55429 !$#authors Watanabe, K.; Fukuchi, T.; Hosoya, H.; Shirasawa, T.; !1Matuoka, K.; Miki, H.; Takenawa, T. !$#journal J. Biol. Chem. (1995) 270:13733-13739 !$#title Splicing isoforms of rat Ash/Grb2. Isolation and !1characterization of the cDNA and genomic DNA clones and !1implications for the physiological roles of the isoforms. !$#cross-references MUID:95293967; PMID:7775428 !$#accession I70119 !'##status translation not shown; translated from GB/EMBL/DDBJ; !1conceptual translation of pseudogene !'##molecule_type mRNA !'##residues 1-85 ##label WAT !'##cross-references DDBJ:D49848; NID:g914958; PIDN:BAA08647.1; !1PID:g914959 KEYWORDS pseudogene SUMMARY #length 85 #molecular-weight 9548 #checksum 4807 SEQUENCE /// ENTRY I37424 #type fragment TITLE probable glutamate dehydrogenase (NAD(P)+) pseudogene 5 - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 28-Jul-2000 #sequence_revision 28-Jul-2000 #text_change 01-Dec-2000 ACCESSIONS I37424; S29932 REFERENCE I37424 !$#authors Tzimagiorgis, G.; Leversha, M.A.; Chroniary, K.; Goulielmos, !1G.; Sargent, C.A.; Ferguson-Smith, M.; Moschonas, N.K. !$#journal Hum. Genet. (1993) 91:433-438 !$#title Structure and expression analysis of a member of the human !1glutamate dehydrogenase (GLUD) gene family mapped to !1chromosome 10p11.2. !$#cross-references MUID:93300479; PMID:8314555 !$#accession I37424 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-19 ##label TZI !'##cross-references EMBL:X67491; NID:g31822; PIDN:CAA47830.1; !1PID:g1335082 !'##note submitted to the EMBL Data Library, July 1992 GENETICS !$#gene GDB:GLUDP5 !'##cross-references GDB:138339 !$#map_position 10p11.2-10p11.2 KEYWORDS pseudogene SUMMARY #length 19 #checksum 4668 SEQUENCE /// ENTRY A57784 #type complete TITLE AML1/MTG8 mutant fusion protein - human ORGANISM #formal_name Homo sapiens #common_name man DATE 15-Feb-1996 #sequence_revision 15-Feb-1996 #text_change 08-Dec-2000 ACCESSIONS A57784 REFERENCE A57784 !$#authors Miyoshi, H.; Kozu, T.; Shimizu, K.; Enomoto, K.; Maseki, N.; !1Kaneko, Y.; Kamada, N.; Ohki, M. !$#journal EMBO J. (1993) 12:2715-2721 !$#title The t(8;21) translocation in acute myeloid leukemia results !1in production of an AML1-MTG8 fusion transcript. !$#cross-references MUID:93327761; PMID:8334990 !$#accession A57784 !'##molecule_type mRNA !'##residues 1-752 ##label MIY !'##cross-references GB:D13979; NID:g407726; PIDN:BAA03089.1; !1PID:g407727 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene CBFA2/MTG8 !$#note AML1 is a synonym for GDB:CBFA2 KEYWORDS fusion protein SUMMARY #length 752 #molecular-weight 83177 #checksum 3021 SEQUENCE /// ENTRY PS0079 #type fragment TITLE probable naringenin-chalcone synthase H pseudogene - garden petunia (fragment) ALTERNATE_NAMES chalcone synthase ORGANISM #formal_name Petunia x hybrida #common_name garden petunia DATE 17-Mar-2000 #sequence_revision 17-Mar-2000 #text_change 08-Dec-2000 ACCESSIONS PS0079 REFERENCE JS0308 !$#authors Koes, R.E.; Spelt, C.E.; van den Elzen, P.J.M.; Mol, J.N.M. !$#journal Gene (1989) 81:245-257 !$#title Cloning and molecular characterization of the chalcone !1synthase multigene family of Petunia hybrida. !$#cross-references MUID:90034197; PMID:2806915 !$#accession PS0079 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-330 ##label KOE !'##cross-references GB:X14596; NID:g20534; PIDN:CAA32736.1; !1PID:g1405790 !'##experimental_source strain Violet 30, leaf !'##note the sequence is revised in GenBank entry PHCHSH, release 114, !1PIDN:CAA32736.1 COMMENT Expression of this gene has not been detected. GENETICS !$#gene chsH !$#map_position V !$#note chsH gene is a fragmented chs gene; only exon 2 is located, !1exon 1 probably does not exist KEYWORDS pseudogene SUMMARY #length 330 #checksum 6232 SEQUENCE /// ENTRY S46932 #type complete TITLE hypothetical cell-division protein FtsZ extended form - Anabaena sp. (strain PCC 7120) ORGANISM #formal_name Anabaena sp. #variety PCC 7120 DATE 20-Oct-1994 #sequence_revision 24-Oct-1996 #text_change 08-Dec-2000 ACCESSIONS S46932 REFERENCE S46932 !$#authors Zhang, C.C. !$#submission submitted to the EMBL Data Library, March 1994 !$#description A homolog of the cell division gene ftsZ from the !1heterocyst-forming cyanobacterium Anabaena PCC 7120. !$#accession S46932 !'##molecule_type DNA !'##residues 1-428 ##label ZHA !'##cross-references EMBL:Z31371; NID:g1100793; PIDN:CAA83241.1; !1PID:g1100794 COMMENT See entry PIR:JC4289 for version translated from the most !1probable initiator codon. GENETICS !$#gene ftsZ KEYWORDS cell division; GTP binding SUMMARY #length 428 #molecular-weight 44714 #checksum 8580 SEQUENCE /// ENTRY B59353 #type complete TITLE tricholongin BI - fungus (Trichoderma longibrachiatum) ORGANISM #formal_name Trichoderma longibrachiatum DATE 20-Oct-2000 #sequence_revision 20-Oct-2000 #text_change 20-Oct-2000 ACCESSIONS B59353 REFERENCE A59353 !$#authors Rebuffat, S.; Prigent, Y.; Auvin-Guette, C.; Bodo, B. !$#journal Eur. J. Biochem. (1991) 201:661-674 !$#title Tricholongins BI and BII, 19-residue peptaibols from !1Trichoderma longibrachiatum: solution structure from !1two-dimensional NMR spectroscopy. !$#cross-references MUID:92037622; PMID:1935961 !$#accession B59353 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-19 ##label REB KEYWORDS antibacterial; antifungal; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,4,5,7,8,9,12,15 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$16 #modified_site 2-amino-2-methylbutanoic acid #status !8experimental\ !$19 #modified_site leucinol #status experimental SUMMARY #length 19 #molecular-weight 2105 #checksum 6031 SEQUENCE /// ENTRY I52708 #type complete TITLE ELAV-like neuronal protein 1, truncated splice form - human ALTERNATE_NAMES Drosophila ELAV(embryonic lethal, abnormal vision)-like 4; Hu antigen D; paraneoplastic encephalomyelitis antigen ORGANISM #formal_name Homo sapiens #common_name man DATE 18-Aug-2000 #sequence_revision 18-Aug-2000 #text_change 18-Aug-2000 ACCESSIONS I52708 REFERENCE I52708 !$#authors Sekido, Y.; Bader, S.A.; Carbone, D.P.; Johnson, B.E.; !1Minna, J.D. !$#journal Cancer Res. (1994) 54:4988-4992 !$#title Molecular analysis of the HuD gene encoding a paraneoplastic !1encephalomyelitis antigen in human lung cancer cell lines. !$#cross-references MUID:94349312; PMID:8069866 !$#accession I52708 !'##status translated from GB/EMBL/DDBJ !'##molecule_type mRNA !'##residues 1-11 ##label SEK !'##cross-references GB:S73887; NID:g688242; PIDN:AAD14142.1; !1PID:g4261842 COMMENT This abnormal peptide is expressed. For the long splice !1form, see PIR:I38726. GENETICS !$#gene GDB:ELAVL4; HUD; PNEM !'##cross-references GDB:141875; OMIM:168360 !$#map_position 1p36-1p36 KEYWORDS alternative splicing SUMMARY #length 11 #molecular-weight 1289 #checksum 5185 SEQUENCE /// ENTRY T01780 #type fragment TITLE probable gag polymerase pseudogene - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 13-Aug-1999 #sequence_revision 13-Aug-1999 #text_change 20-Oct-2000 ACCESSIONS T01780 REFERENCE Z14423 !$#authors Repaske, R.; O'Neill, R.R.; Steele, P.E.; Martin, M.A. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1983) 80:678-682 !$#title Characterization and partial nucleotide sequence of !1endogenous type C retrovirus segments in human chromosomal !1DNA. !$#cross-references MUID:83143994; PMID:6298769 !$#accession T01780 !'##status translated from GB/EMBL/DDBJ; conceptual translation of !1pseudogene !'##molecule_type DNA !'##residues 1-24 ##label REP !'##cross-references EMBL:J00274; NID:g182154 KEYWORDS pseudogene SUMMARY #length 24 #checksum 2126 SEQUENCE /// ENTRY T01781 #type fragment TITLE probable pol protein pseudogene - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 13-Aug-1999 #sequence_revision 13-Aug-1999 #text_change 20-Oct-2000 ACCESSIONS T01781 REFERENCE Z14423 !$#authors Repaske, R.; O'Neill, R.R.; Steele, P.E.; Martin, M.A. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1983) 80:678-682 !$#title Characterization and partial nucleotide sequence of !1endogenous type C retrovirus segments in human chromosomal !1DNA. !$#cross-references MUID:83143994; PMID:6298769 !$#accession T01781 !'##status translated from GB/EMBL/DDBJ; conceptual translation of !1pseudogene !'##molecule_type DNA !'##residues 1-122 ##label REP !'##cross-references EMBL:J00275; NID:g182155 KEYWORDS pseudogene SUMMARY #length 122 #checksum 9541 SEQUENCE /// ENTRY A35039 #type complete TITLE hypothetical collagen alpha 2(I) intron 2 protein 1 - chicken ORGANISM #formal_name Gallus gallus #common_name chicken DATE 18-Aug-2000 #sequence_revision 18-Aug-2000 #text_change 18-Aug-2000 ACCESSIONS A35039 REFERENCE A35039 !$#authors Bennett, V.D.; Adams, S.L. !$#journal J. Biol. Chem. (1990) 265:2223-2230 !$#title Identification of a cartilage-specific promoter within !1intron 2 of the chick alpha2(I) collagen gene. !$#cross-references MUID:90130479; PMID:1688851 !$#accession A35039 !'##molecule_type mRNA !'##residues 1-6 ##label BEN !'##cross-references GB:M33382; NID:g211043 !'##note this ORF is not translated in GenBank entry CHKA2ICG COMMENT This sequence is the translation of a cartilage specific !1alternative transcript of the collagen alpha 2(I) gene. !1There is at no evidence that the transcript is translated. KEYWORDS alternative splicing; cartilage SUMMARY #length 6 #molecular-weight 575 #checksum 1586 SEQUENCE /// ENTRY JE0015 #type complete TITLE probable 2.8K protein pseudogene - cucumber mosaic virus (strain D) ORGANISM #formal_name cucumber mosaic virus, CMV DATE 31-Dec-1991 #sequence_revision 28-May-1998 #text_change 20-Oct-2000 ACCESSIONS JE0015; PS0286 REFERENCE JE0015 !$#authors Richards, K.E.; Jonard, G.; Jacquemond, M.; Lot, H. !$#journal Virology (1978) 89:395-408 !$#title Nucleotide sequence of cucumber mosaic virus-associated RNA !15. !$#accession JE0015 !'##status translation not shown; conceptual translation of pseudogene !'##molecule_type genomic RNA !'##residues 1-27 ##label RIC REFERENCE JE0018 !$#authors Kaper, J.M.; Tousignant, M.E.; Steen, M.T. !$#journal Virology (1988) 163:284-292 !$#title Cucumber mosaic virus-associated RNA 5. XI. Comparison of 14 !1CARNA 5 variants relates ability to induce tomato necrosis !1to a conserved nucleotide sequence. !$#cross-references MUID:88179532; PMID:3354198 !$#accession PS0286 !'##status translation not shown; conceptual translation of pseudogene !'##molecule_type genomic RNA !'##residues 1-27 ##label KAP !'##cross-references GB:M20350; NID:g331658; PIDN:AAA46385.1; !1PID:g331659 !'##note this sequence is found in strain D and isolates Sq10, Ch20, !1X2nT3, X7, X12 and X15 of Indonesian strain GENETICS !$#map_position segment 5 KEYWORDS pseudogene SUMMARY #length 27 #molecular-weight 2827 #checksum 8223 SEQUENCE /// ENTRY JE0016 #type complete TITLE probable 2.9K protein pseudogene - cucumber mosaic virus (strain D) ORGANISM #formal_name cucumber mosaic virus, CMV DATE 31-Dec-1991 #sequence_revision 28-May-1998 #text_change 20-Oct-2000 ACCESSIONS JE0016; PS0285 REFERENCE JE0015 !$#authors Richards, K.E.; Jonard, G.; Jacquemond, M.; Lot, H. !$#journal Virology (1978) 89:395-408 !$#title Nucleotide sequence of cucumber mosaic virus-associated RNA !15. !$#accession JE0016 !'##status translation not shown; conceptual translation of pseudogene !'##molecule_type genomic RNA !'##residues 1-23 ##label RIC REFERENCE JE0018 !$#authors Kaper, J.M.; Tousignant, M.E.; Steen, M.T. !$#journal Virology (1988) 163:284-292 !$#title Cucumber mosaic virus-associated RNA 5. XI. Comparison of 14 !1CARNA 5 variants relates ability to induce tomato necrosis !1to a conserved nucleotide sequence. !$#cross-references MUID:88179532; PMID:3354198 !$#accession PS0285 !'##status translation not shown; conceptual translation of pseudogene !'##molecule_type genomic RNA !'##residues 1-23 ##label KAP !'##cross-references GB:M20350; NID:g331658; PIDN:AAA46386.1; !1PID:g331660 !'##note this sequence is found in strain D and isolates X12 and X15 of !1Indonesian strain !'##note the sequences for isolates Sq20, Ch20, X2nT3, and X7 of !1Indonesian strain differ from that shown in having 2-Leu GENETICS !$#map_position segment 5 KEYWORDS pseudogene SUMMARY #length 23 #molecular-weight 2887 #checksum 2487 SEQUENCE /// ENTRY JE0017 #type complete TITLE probable 4.8K protein pseudogene - cucumber mosaic virus (strain D) ORGANISM #formal_name cucumber mosaic virus, CMV DATE 31-Dec-1991 #sequence_revision 28-May-1998 #text_change 20-Oct-2000 ACCESSIONS PS0284; JE0017 REFERENCE JE0018 !$#authors Kaper, J.M.; Tousignant, M.E.; Steen, M.T. !$#journal Virology (1988) 163:284-292 !$#title Cucumber mosaic virus-associated RNA 5. XI. Comparison of 14 !1CARNA 5 variants relates ability to induce tomato necrosis !1to a conserved nucleotide sequence. !$#cross-references MUID:88179532; PMID:3354198 !$#accession PS0284 !'##status translation not shown; conceptual translation of pseudogene !'##molecule_type genomic RNA !'##residues 1-42 ##label KAP !'##cross-references GB:M20350; NID:g331658; PIDN:AAA46387.1; !1PID:g331661 REFERENCE JE0015 !$#authors Richards, K.E.; Jonard, G.; Jacquemond, M.; Lot, H. !$#journal Virology (1978) 89:395-408 !$#title Nucleotide sequence of cucumber mosaic virus-associated RNA !15. !$#accession JE0017 !'##status translation not shown; conceptual translation of pseudogene !'##molecule_type genomic RNA !'##residues 1-30,'FL',33-42 ##label RIC GENETICS !$#map_position segment 5 KEYWORDS pseudogene SUMMARY #length 42 #molecular-weight 4802 #checksum 231 SEQUENCE /// ENTRY JE0020 #type complete TITLE probable 4.8K protein pseudogene - cucumber mosaic virus (strain Indonesia, isolate Sq10 and Ch20) ORGANISM #formal_name cucumber mosaic virus, CMV DATE 31-Dec-1991 #sequence_revision 28-May-1998 #text_change 20-Oct-2000 ACCESSIONS JE0020 REFERENCE JE0018 !$#authors Kaper, J.M.; Tousignant, M.E.; Steen, M.T. !$#journal Virology (1988) 163:284-292 !$#title Cucumber mosaic virus-associated RNA 5. XI. Comparison of 14 !1CARNA 5 variants relates ability to induce tomato necrosis !1to a conserved nucleotide sequence. !$#cross-references MUID:88179532; PMID:3354198 !$#accession JE0020 !'##status translation not shown; conceptual translation of pseudogene !'##molecule_type genomic RNA !'##residues 1-42 ##label KAP !'##cross-references GB:M20352; NID:g331662; PIDN:AAA46390.1; !1PID:g331665 GENETICS !$#map_position segment 5 KEYWORDS pseudogene SUMMARY #length 42 #molecular-weight 4835 #checksum 9983 SEQUENCE /// ENTRY JE0018 #type complete TITLE probable 6.1K protein pseudogene - cucumber mosaic virus (strain Indonesia, isolates X2nT3 and X7) ORGANISM #formal_name cucumber mosaic virus, CMV DATE 31-Dec-1991 #sequence_revision 28-May-1998 #text_change 20-Oct-2000 ACCESSIONS JE0018 REFERENCE JE0018 !$#authors Kaper, J.M.; Tousignant, M.E.; Steen, M.T. !$#journal Virology (1988) 163:284-292 !$#title Cucumber mosaic virus-associated RNA 5. XI. Comparison of 14 !1CARNA 5 variants relates ability to induce tomato necrosis !1to a conserved nucleotide sequence. !$#cross-references MUID:88179532; PMID:3354198 !$#accession JE0018 !'##status translation not shown; conceptual translation of pseudogene !'##molecule_type genomic RNA !'##residues 1-54 ##label KAP !'##cross-references GB:M20354; GB:M20355; NID:g331670; NID:g331674; !1PIDN:AAA46396.1; PIDN:AAA46399.1; PID:g331673; PID:g331677 GENETICS !$#map_position segment 5 KEYWORDS pseudogene SUMMARY #length 54 #molecular-weight 6069 #checksum 1613 SEQUENCE /// ENTRY S13768 #type complete TITLE MHC class I histocompatibility antigen H-2-D4-q alpha chain pseudogene - mouse ORGANISM #formal_name Mus musculus #common_name house mouse DATE 21-Nov-1993 #sequence_revision 30-Apr-1998 #text_change 20-Oct-2000 ACCESSIONS S13768 REFERENCE S13766 !$#authors Rubocki, R.J.; Lee, D.R.; Lie, W.R.; Myers, N.B.; Hansen, !1T.H. !$#journal J. Exp. Med. (1990) 171:2043-2061 !$#title Molecular evidence that the H-2D and H-2L genes arose by !1duplication. Differences between the evolution of the class !1I genes in mice and humans. !$#cross-references MUID:90278357; PMID:2351932 !$#accession S13768 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-142 ##label RUB !'##cross-references EMBL:X52914; NID:g57863; PIDN:CAA37102.1; !1PID:g57864 COMMENT A 13bp deletion and a 4bp insertion within the alpha2 exon !1create a frameshift and truncation. GENETICS !$#introns 22/1; 112/1 KEYWORDS pseudogene SUMMARY #length 142 #molecular-weight 16119 #checksum 6664 SEQUENCE /// ENTRY S14607 #type complete TITLE rev protein - synthetic ORGANISM #formal_name synthetic DATE 20-Feb-1995 #sequence_revision 30-Apr-1998 #text_change 20-Oct-2000 ACCESSIONS S14607 REFERENCE S14607 !$#authors Ciccarelli, R.B. !$#submission submitted to the EMBL Data Library, March 1991 !$#accession S14607 !'##molecule_type DNA !'##residues 1-116 ##label CIC !'##cross-references EMBL:X58781; NID:g60140; PIDN:CAA41586.1; !1PID:g60141 SUMMARY #length 116 #molecular-weight 13065 #checksum 5869 SEQUENCE /// ENTRY S33905 #type complete TITLE Ig heavy chain precursor V region - synthetic ORGANISM #formal_name synthetic DATE 13-Jan-1995 #sequence_revision 30-Apr-1998 #text_change 20-Oct-2000 ACCESSIONS S33905 REFERENCE S33905 !$#authors Liu, A.Y.; Robinson, R.R.; Hellstroem, K.E.; Murray Jr., !1E.D.; Chang, C.P.; Hellstroem, I. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1987) 84:3439-3443 !$#title Chimeric mouse-human IgG1 antibody that can mediate lysis of !1cancer cells. !$#cross-references MUID:87204152; PMID:3106970 !$#accession S33905 !'##molecule_type mRNA !'##residues 1-146 ##label LIU !'##cross-references EMBL:M16072; NID:g195270; PIDN:AAA38229.1; !1PID:g195271 SUMMARY #length 146 #molecular-weight 16358 #checksum 6093 SEQUENCE /// ENTRY S41909 #type complete TITLE hypothetical protein phyD region pseudogene - Arabidopsis thaliana ORGANISM #formal_name Arabidopsis thaliana #common_name mouse-ear cress DATE 13-Jan-1995 #sequence_revision 30-Apr-1998 #text_change 20-Oct-2000 ACCESSIONS S41909 REFERENCE S41909 !$#authors Clack, T.; Mathews, S.; Sharrock, R.A. !$#submission submitted to the EMBL Data Library, December 1993 !$#description The phytochrome apoprotein family in Arabidopsis is encoded !1by five gewnes: the sequences and expression of PHYD and !1PHYE. !$#accession S41909 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-11 ##label CLA !'##cross-references EMBL:X76609; NID:g452812; PIDN:CAA54071.1; !1PID:g452813 COMMENT There is no evidence that this short open reading frame in !1the phyD 5'-untranslated region is expressed. KEYWORDS pseudogene SUMMARY #length 11 #molecular-weight 1390 #checksum 4960 SEQUENCE /// ENTRY S41911 #type complete TITLE hypothetical protein phyE region pseudogene - Arabidopsis thaliana ORGANISM #formal_name Arabidopsis thaliana #common_name mouse-ear cress DATE 13-Jan-1995 #sequence_revision 30-Apr-1998 #text_change 20-Oct-2000 ACCESSIONS S41911 REFERENCE S41909 !$#authors Clack, T.; Mathews, S.; Sharrock, R.A. !$#submission submitted to the EMBL Data Library, December 1993 !$#description The phytochrome apoprotein family in Arabidopsis is encoded !1by five gewnes: the sequences and expression of PHYD and !1PHYE. !$#accession S41911 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-35 ##label CLA !'##cross-references EMBL:X76610; NID:g452815; PIDN:CAA54074.1; !1PID:g452816 COMMENT There is no evidence that this short open reading frame in !1the phyE promotor region is expressed. SUMMARY #length 35 #molecular-weight 4003 #checksum 9205 SEQUENCE /// ENTRY S51861 #type complete TITLE hypothetical protein YD9302.09c pseudogene - yeast (Saccharomyces cerevisiae) ALTERNATE_NAMES hypothetical protein YDR134c ORGANISM #formal_name Saccharomyces cerevisiae DATE 05-May-1995 #sequence_revision 30-Apr-1998 #text_change 20-Oct-2000 ACCESSIONS S51861 REFERENCE S51853 !$#authors Oliver, K.; Harris, D. !$#submission submitted to the EMBL Data Library, February 1995 !$#accession S51861 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-69 ##label OLI !'##cross-references EMBL:Z48179; NID:g665657; MIPS:YDR134c GENETICS !$#map_position 4R !$#note YDR134c KEYWORDS pseudogene SUMMARY #length 69 #molecular-weight 6999 #checksum 3386 SEQUENCE /// ENTRY S51862 #type complete TITLE hypothetical protein YD9302.10c pseudogene - yeast (Saccharomyces cerevisiae) ALTERNATE_NAMES hypothetical protein YDR134c ORGANISM #formal_name Saccharomyces cerevisiae DATE 05-May-1995 #sequence_revision 30-Apr-1998 #text_change 20-Oct-2000 ACCESSIONS S51862 REFERENCE S51853 !$#authors Oliver, K.; Harris, D. !$#submission submitted to the EMBL Data Library, February 1995 !$#accession S51862 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-66 ##label OLI !'##cross-references EMBL:Z48179; NID:g665657; PIDN:CAA88216.1; !1PID:g665667; MIPS:YDR134c GENETICS !$#map_position 4R !$#note YDR134c KEYWORDS pseudogene SUMMARY #length 66 #molecular-weight 6604 #checksum 1237 SEQUENCE /// ENTRY B47521 #type complete TITLE RNA-dependent RNA polymerase-containing ORF - giardiavirus GLV ORGANISM #formal_name giardiavirus, GLV #note host Giardia lamblia DATE 21-Jan-1994 #sequence_revision 12-Feb-1998 #text_change 20-Oct-2000 ACCESSIONS B47521 REFERENCE A47521 !$#authors Wang, A.L.; Yang, H.M.; Shen, K.A.; Wang, C.C. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1993) 90:8595-8599 !$#title Giardiavirus double-stranded RNA genome encodes a capsid !1polypeptide and a gag-pol-like fusion protein by a !1translation frameshift. !$#cross-references MUID:93391401; PMID:8378334 !$#accession B47521 !'##molecule_type genomic RNA !'##residues 1-1057 ##label WAN !'##cross-references GB:L13218; NID:g1352866; PIDN:AAB01579.1; !1PID:g1352868 !'##note sequence extracted from NCBI backbone (NCBIN:137593, !1NCBIP:137595) COMMENT This sequence represents an open reading frame from stop !1codon to stop codon. This gene is believed to be expressed !1from a -1 translational frameshift rather than from an !1initiator codon, and be part the of 190 kDa gag-pol fusion !1protein. SUMMARY #length 1057 #molecular-weight 120097 #checksum 72 SEQUENCE /// ENTRY PC2390 #type complete TITLE trichorozin I - fungus (Trichoderma harzianum) ORGANISM #formal_name Trichoderma harzianum DATE 17-May-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2390 REFERENCE PC2390 !$#authors Iida, A.; Sanekata, M.; Wada, S.; Fujita, T.; Tanaka, H.; !1Enoki, A.; Fuse, G.; Kanai, M.; Asami, K. !$#journal Chem. Pharm. Bull. (1995) 43:392-397 !$#title Fungal metabolites. XVIII. New membrane-modifying peptides, !1trichorozins I-IV, from the fungus Trichoderma harzianum. !$#cross-references MUID:95292356; PMID:7539721 !$#accession PC2390 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-11 ##label IID COMMENT This peptide exhibits voltage-dependent ion channel-like !1activity in lipid bilayers. KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,5,9 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$11 #modified_site valinol #status experimental SUMMARY #length 11 #molecular-weight 1220 #checksum 5366 SEQUENCE /// ENTRY PC2391 #type complete TITLE trichorozin II - fungus (Trichoderma harzianum) ORGANISM #formal_name Trichoderma harzianum DATE 17-May-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2391 REFERENCE PC2390 !$#authors Iida, A.; Sanekata, M.; Wada, S.; Fujita, T.; Tanaka, H.; !1Enoki, A.; Fuse, G.; Kanai, M.; Asami, K. !$#journal Chem. Pharm. Bull. (1995) 43:392-397 !$#title Fungal metabolites. XVIII. New membrane-modifying peptides, !1trichorozins I-IV, from the fungus Trichoderma harzianum. !$#cross-references MUID:95292356; PMID:7539721 !$#accession PC2391 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-11 ##label IID COMMENT This peptide exhibits voltage-dependent ion channel-like !1activity in lipid bilayers. KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,5,9 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$11 #modified_site valinol #status experimental SUMMARY #length 11 #molecular-weight 1234 #checksum 5372 SEQUENCE /// ENTRY PC2392 #type complete TITLE trichorozin III - fungus (Trichoderma harzianum) ORGANISM #formal_name Trichoderma harzianum DATE 17-May-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2392 REFERENCE PC2390 !$#authors Iida, A.; Sanekata, M.; Wada, S.; Fujita, T.; Tanaka, H.; !1Enoki, A.; Fuse, G.; Kanai, M.; Asami, K. !$#journal Chem. Pharm. Bull. (1995) 43:392-397 !$#title Fungal metabolites. XVIII. New membrane-modifying peptides, !1trichorozins I-IV, from the fungus Trichoderma harzianum. !$#cross-references MUID:95292356; PMID:7539721 !$#accession PC2392 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-11 ##label IID COMMENT This peptide exhibits voltage-dependent ion channel-like !1activity in lipid bilayers. KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,5,9 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$11 #modified_site leucinol #status experimental SUMMARY #length 11 #molecular-weight 1220 #checksum 5366 SEQUENCE /// ENTRY PC2393 #type complete TITLE trichorozin IV - fungus (Trichoderma harzianum) ORGANISM #formal_name Trichoderma harzianum DATE 17-May-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2393 REFERENCE PC2390 !$#authors Iida, A.; Sanekata, M.; Wada, S.; Fujita, T.; Tanaka, H.; !1Enoki, A.; Fuse, G.; Kanai, M.; Asami, K. !$#journal Chem. Pharm. Bull. (1995) 43:392-397 !$#title Fungal metabolites. XVIII. New membrane-modifying peptides, !1trichorozins I-IV, from the fungus Trichoderma harzianum. !$#cross-references MUID:95292356; PMID:7539721 !$#accession PC2393 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-11 ##label IID COMMENT This peptide exhibits voltage-dependent ion channel-like !1activity in lipid bilayers. KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,5,9 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$11 #modified_site leucinol #status experimental SUMMARY #length 11 #molecular-weight 1234 #checksum 5372 SEQUENCE /// ENTRY PC2056 #type complete TITLE trichodecenin I - fungus (Trichoderma viride) ORGANISM #formal_name Trichoderma viride DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2056 REFERENCE PC2056 !$#authors Fujita, T.; Wada, S.; Iida, A.; Nishimura, T.; Kanai, M.; !1Toyama, N. !$#journal Chem. Pharm. Bull. (1994) 42:489-494 !$#title Fungal metabolites. XIII. Isolation and structural !1elucidation of new peptaibols, trichodecenins-I and -II, !1from Trichoderma viride. !$#cross-references MUID:94273211; PMID:8004694 !$#accession PC2056 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-7 ##label FUJ COMMENT This protein exhibits activities such as voltage-dependent !1ion channel formation, uncoupling activity against rat liver !1mitochondria and induction of catecholamine secretion from !1adrenal chromaffin cells. KEYWORDS antibiotic; unencoded polypeptide FEATURE !$4 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$7 #modified_site leucinol #status experimental SUMMARY #length 7 #molecular-weight 636 #checksum 2202 SEQUENCE /// ENTRY PC2057 #type complete TITLE trichodecenin II - fungus (Trichoderma viride) ORGANISM #formal_name Trichoderma viride DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2057 REFERENCE PC2056 !$#authors Fujita, T.; Wada, S.; Iida, A.; Nishimura, T.; Kanai, M.; !1Toyama, N. !$#journal Chem. Pharm. Bull. (1994) 42:489-494 !$#title Fungal metabolites. XIII. Isolation and structural !1elucidation of new peptaibols, trichodecenins-I and -II, !1from Trichoderma viride. !$#cross-references MUID:94273211; PMID:8004694 !$#accession PC2057 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-7 ##label FUJ COMMENT This protein has unique biological activities such as !1voltage-dependent ion channel formation, uncoupling activity !1against rat liver mitochondria and induction of !1catecholamine secretion from adrenal chromaffin cells. KEYWORDS antibiotic; unencoded polypeptide FEATURE !$4 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$7 #modified_site leucinol #status experimental SUMMARY #length 7 #molecular-weight 636 #checksum 2220 SEQUENCE /// ENTRY PC2071 #type complete TITLE trichosporin-B Ia - fungus (Trichoderma polysporum) ORGANISM #formal_name Trichoderma polysporum DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2071 REFERENCE PC2071 !$#authors Okuda, M.; Iida, A.; Uesato, S.; Nagaoka, Y.; Fujita, T.; !1Takaishi, Y.; Terada, H. !$#journal Biol. Pharm. Bull. (1994) 17:482-485 !$#title Fungal metabolites. X. The effect of peptide antibiotics, !1trichosporin-Bs, on the respiratory activity of !1mitochondria. !$#cross-references MUID:94348454; PMID:8069252 !$#accession PC2071 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-20 ##label OKU KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,5,6,8,10,13,16,17 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$20 #modified_site phenylalaninol #status experimental SUMMARY #length 20 #molecular-weight 2103 #checksum 7438 SEQUENCE /// ENTRY PC2072 #type complete TITLE trichosporin-B IIIa - fungus (Trichoderma polysporum) ORGANISM #formal_name Trichoderma polysporum DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2072 REFERENCE PC2071 !$#authors Okuda, M.; Iida, A.; Uesato, S.; Nagaoka, Y.; Fujita, T.; !1Takaishi, Y.; Terada, H. !$#journal Biol. Pharm. Bull. (1994) 17:482-485 !$#title Fungal metabolites. X. The effect of peptide antibiotics, !1trichosporin-Bs, on the respiratory activity of !1mitochondria. !$#cross-references MUID:94348454; PMID:8069252 !$#accession PC2072 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-20 ##label OKU KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,5,6,8,10,13,16,17 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$20 #modified_site phenylalaninol #status experimental SUMMARY #length 20 #molecular-weight 2087 #checksum 7384 SEQUENCE /// ENTRY PC2073 #type complete TITLE trichosporin-B IIIb - fungus (Trichoderma polysporum) ORGANISM #formal_name Trichoderma polysporum DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2073 REFERENCE PC2071 !$#authors Okuda, M.; Iida, A.; Uesato, S.; Nagaoka, Y.; Fujita, T.; !1Takaishi, Y.; Terada, H. !$#journal Biol. Pharm. Bull. (1994) 17:482-485 !$#title Fungal metabolites. X. The effect of peptide antibiotics, !1trichosporin-Bs, on the respiratory activity of !1mitochondria. !$#cross-references MUID:94348454; PMID:8069252 !$#accession PC2073 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-20 ##label OKU KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,5,6,8,10,13,16 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$20 #modified_site phenylalaninol #status experimental SUMMARY #length 20 #molecular-weight 2047 #checksum 6966 SEQUENCE /// ENTRY PC2074 #type complete TITLE trichosporin-B IIIc - fungus (Trichoderma polysporum) ORGANISM #formal_name Trichoderma polysporum DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2074 REFERENCE PC2071 !$#authors Okuda, M.; Iida, A.; Uesato, S.; Nagaoka, Y.; Fujita, T.; !1Takaishi, Y.; Terada, H. !$#journal Biol. Pharm. Bull. (1994) 17:482-485 !$#title Fungal metabolites. X. The effect of peptide antibiotics, !1trichosporin-Bs, on the respiratory activity of !1mitochondria. !$#cross-references MUID:94348454; PMID:8069252 !$#accession PC2074 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-20 ##label OKU KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,6,8,10,13,16,17 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$20 #modified_site phenylalaninol #status experimental SUMMARY #length 20 #molecular-weight 2047 #checksum 7242 SEQUENCE /// ENTRY PC2075 #type complete TITLE trichosporin-B IIId - fungus (Trichoderma polysporum) ORGANISM #formal_name Trichoderma polysporum DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2075 REFERENCE PC2071 !$#authors Okuda, M.; Iida, A.; Uesato, S.; Nagaoka, Y.; Fujita, T.; !1Takaishi, Y.; Terada, H. !$#journal Biol. Pharm. Bull. (1994) 17:482-485 !$#title Fungal metabolites. X. The effect of peptide antibiotics, !1trichosporin-Bs, on the respiratory activity of !1mitochondria. !$#cross-references MUID:94348454; PMID:8069252 !$#accession PC2075 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-20 ##label OKU KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,5,6,8,10,13,16,17 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$20 #modified_site phenylalaninol #status experimental SUMMARY #length 20 #molecular-weight 2073 #checksum 7474 SEQUENCE /// ENTRY PC2076 #type complete TITLE trichosporin-B IVb - fungus (Trichoderma polysporum) ORGANISM #formal_name Trichoderma polysporum DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2076 REFERENCE PC2071 !$#authors Okuda, M.; Iida, A.; Uesato, S.; Nagaoka, Y.; Fujita, T.; !1Takaishi, Y.; Terada, H. !$#journal Biol. Pharm. Bull. (1994) 17:482-485 !$#title Fungal metabolites. X. The effect of peptide antibiotics, !1trichosporin-Bs, on the respiratory activity of !1mitochondria. !$#cross-references MUID:94348454; PMID:8069252 !$#accession PC2076 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-20 ##label OKU KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,5,6,8,10,13,16 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$17 #modified_site 2-amino-2-methylbutanoic acid #status !8experimental\ !$20 #modified_site phenylalaninol #status experimental SUMMARY #length 20 #molecular-weight 2087 #checksum 7384 SEQUENCE /// ENTRY PC2077 #type complete TITLE trichosporin-B IVc - fungus (Trichoderma polysporum) ORGANISM #formal_name Trichoderma polysporum DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2077 REFERENCE PC2071 !$#authors Okuda, M.; Iida, A.; Uesato, S.; Nagaoka, Y.; Fujita, T.; !1Takaishi, Y.; Terada, H. !$#journal Biol. Pharm. Bull. (1994) 17:482-485 !$#title Fungal metabolites. X. The effect of peptide antibiotics, !1trichosporin-Bs, on the respiratory activity of !1mitochondria. !$#cross-references MUID:94348454; PMID:8069252 !$#accession PC2077 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-20 ##label OKU KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,3,5,6,8,10,13,16, !$17 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$20 #modified_site phenylalaninol #status experimental SUMMARY #length 20 #molecular-weight 2112 #checksum 7543 SEQUENCE /// ENTRY PC2078 #type complete TITLE trichosporin-B IVd - fungus (Trichoderma polysporum) ORGANISM #formal_name Trichoderma polysporum DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2078 REFERENCE PC2071 !$#authors Okuda, M.; Iida, A.; Uesato, S.; Nagaoka, Y.; Fujita, T.; !1Takaishi, Y.; Terada, H. !$#journal Biol. Pharm. Bull. (1994) 17:482-485 !$#title Fungal metabolites. X. The effect of peptide antibiotics, !1trichosporin-Bs, on the respiratory activity of !1mitochondria. !$#cross-references MUID:94348454; PMID:8069252 !$#accession PC2078 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-20 ##label OKU KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,5,6,8,10,13,16 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$17 #modified_site 2-amino-2-methylbutanoic acid #status !8experimental\ !$20 #modified_site phenylalaninol #status experimental SUMMARY #length 20 #molecular-weight 2073 #checksum 7474 SEQUENCE /// ENTRY PC2079 #type complete TITLE trichosporin-B V - fungus (Trichoderma polysporum) ORGANISM #formal_name Trichoderma polysporum DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2079 REFERENCE PC2071 !$#authors Okuda, M.; Iida, A.; Uesato, S.; Nagaoka, Y.; Fujita, T.; !1Takaishi, Y.; Terada, H. !$#journal Biol. Pharm. Bull. (1994) 17:482-485 !$#title Fungal metabolites. X. The effect of peptide antibiotics, !1trichosporin-Bs, on the respiratory activity of !1mitochondria. !$#cross-references MUID:94348454; PMID:8069252 !$#accession PC2079 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-20 ##label OKU KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,5,6,8,10,13,16,17 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$20 #modified_site phenylalaninol #status experimental SUMMARY #length 20 #molecular-weight 2087 #checksum 7357 SEQUENCE /// ENTRY PC2080 #type complete TITLE trichosporin-B VIa - fungus (Trichoderma polysporum) ORGANISM #formal_name Trichoderma polysporum DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2080 REFERENCE PC2071 !$#authors Okuda, M.; Iida, A.; Uesato, S.; Nagaoka, Y.; Fujita, T.; !1Takaishi, Y.; Terada, H. !$#journal Biol. Pharm. Bull. (1994) 17:482-485 !$#title Fungal metabolites. X. The effect of peptide antibiotics, !1trichosporin-Bs, on the respiratory activity of !1mitochondria. !$#cross-references MUID:94348454; PMID:8069252 !$#accession PC2080 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-20 ##label OKU KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,3,5,6,8,10,13,16, !$17 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$20 #modified_site phenylalaninol #status experimental SUMMARY #length 20 #molecular-weight 2126 #checksum 7426 SEQUENCE /// ENTRY PC2081 #type complete TITLE trichosporin-B VIb - fungus (Trichoderma polysporum) ORGANISM #formal_name Trichoderma polysporum DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2081 REFERENCE PC2071 !$#authors Okuda, M.; Iida, A.; Uesato, S.; Nagaoka, Y.; Fujita, T.; !1Takaishi, Y.; Terada, H. !$#journal Biol. Pharm. Bull. (1994) 17:482-485 !$#title Fungal metabolites. X. The effect of peptide antibiotics, !1trichosporin-Bs, on the respiratory activity of !1mitochondria. !$#cross-references MUID:94348454; PMID:8069252 !$#accession PC2081 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-20 ##label OKU KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,5,6,8,10,13,16 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$17 #modified_site 2-amino-2-methylbutanoic acid #status !8experimental\ !$20 #modified_site phenylalaninol #status experimental SUMMARY #length 20 #molecular-weight 2087 #checksum 7357 SEQUENCE /// ENTRY PC2144 #type complete TITLE trichokindin Ia - fungus (Trichoderma harzianum) ORGANISM #formal_name Trichoderma harzianum DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2144 REFERENCE PC2144 !$#authors Iida, A.; Sanekata, M.; Fujita, T.; Tanaka, H.; Enoki, A.; !1Fuse, G.; Kanai, M.; Rudewicz, P.J.; Tachikawa, E. !$#journal Chem. Pharm. Bull. (1994) 42:1070-1075 !$#title Fungal metabolites. XVI. Structures of new peptaibols, !1trichokindins I-VII, from the fungus Trichoderma harzianum. !$#cross-references MUID:94349425; PMID:8069958 !$#accession PC2144 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-18 ##label IID COMMENT This protein induces Ca2+-dependent catecholamine secretion !1from bovine adrenal medullary chromaffin cells. KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,4,5,9,11,12,15,16 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$7 #modified_site 2-amino-2-methylbutanoic acid #status !8experimental\ !$18 #modified_site isoleucinol #status experimental SUMMARY #length 18 #molecular-weight 1928 #checksum 4210 SEQUENCE /// ENTRY PC2145 #type complete TITLE trichokindin Ib - fungus (Trichoderma harzianum) ORGANISM #formal_name Trichoderma harzianum DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2145 REFERENCE PC2144 !$#authors Iida, A.; Sanekata, M.; Fujita, T.; Tanaka, H.; Enoki, A.; !1Fuse, G.; Kanai, M.; Rudewicz, P.J.; Tachikawa, E. !$#journal Chem. Pharm. Bull. (1994) 42:1070-1075 !$#title Fungal metabolites. XVI. Structures of new peptaibols, !1trichokindins I-VII, from the fungus Trichoderma harzianum. !$#cross-references MUID:94349425; PMID:8069958 !$#accession PC2145 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-18 ##label IID COMMENT This protein induces Ca2+-dependent catecholamine secretion !1from bovine adrenal medullary chromaffin cells. KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,4,7,9,11,12,15,16 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$5 #modified_site 2-amino-2-methylbutanoic acid #status !8experimental\ !$18 #modified_site isoleucinol #status experimental SUMMARY #length 18 #molecular-weight 1928 #checksum 4210 SEQUENCE /// ENTRY PC2146 #type complete TITLE trichokindin IIa - fungus (Trichoderma harzianum) ORGANISM #formal_name Trichoderma harzianum DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2146 REFERENCE PC2144 !$#authors Iida, A.; Sanekata, M.; Fujita, T.; Tanaka, H.; Enoki, A.; !1Fuse, G.; Kanai, M.; Rudewicz, P.J.; Tachikawa, E. !$#journal Chem. Pharm. Bull. (1994) 42:1070-1075 !$#title Fungal metabolites. XVI. Structures of new peptaibols, !1trichokindins I-VII, from the fungus Trichoderma harzianum. !$#cross-references MUID:94349425; PMID:8069958 !$#accession PC2146 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-18 ##label IID COMMENT This protein induces Ca2+-dependent catecholamine secretion !1from bovine adrenal medullary chromaffin cells. KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,4,5,7,9,12,15,16 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$11 #modified_site 2-amino-2-methylbutanoic acid #status !8experimental\ !$18 #modified_site isoleucinol #status experimental SUMMARY #length 18 #molecular-weight 1928 #checksum 4210 SEQUENCE /// ENTRY PC2147 #type complete TITLE trichokindin IIb - fungus (Trichoderma harzianum) ORGANISM #formal_name Trichoderma harzianum DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2147 REFERENCE PC2144 !$#authors Iida, A.; Sanekata, M.; Fujita, T.; Tanaka, H.; Enoki, A.; !1Fuse, G.; Kanai, M.; Rudewicz, P.J.; Tachikawa, E. !$#journal Chem. Pharm. Bull. (1994) 42:1070-1075 !$#title Fungal metabolites. XVI. Structures of new peptaibols, !1trichokindins I-VII, from the fungus Trichoderma harzianum. !$#cross-references MUID:94349425; PMID:8069958 !$#accession PC2147 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-18 ##label IID COMMENT This protein induces Ca2+-dependent catecholamine secretion !1from bovine adrenal medullary chromaffin cells. KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,4,9,11,12,15,16 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$5,7 #modified_site 2-amino-2-methylbutanoic acid #status !8experimental\ !$18 #modified_site leucinol #status experimental SUMMARY #length 18 #molecular-weight 1928 #checksum 4210 SEQUENCE /// ENTRY PC2148 #type complete TITLE trichokindin IIIa - fungus (Trichoderma harzianum) ORGANISM #formal_name Trichoderma harzianum DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2148 REFERENCE PC2144 !$#authors Iida, A.; Sanekata, M.; Fujita, T.; Tanaka, H.; Enoki, A.; !1Fuse, G.; Kanai, M.; Rudewicz, P.J.; Tachikawa, E. !$#journal Chem. Pharm. Bull. (1994) 42:1070-1075 !$#title Fungal metabolites. XVI. Structures of new peptaibols, !1trichokindins I-VII, from the fungus Trichoderma harzianum. !$#cross-references MUID:94349425; PMID:8069958 !$#accession PC2148 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-18 ##label IID COMMENT This protein induces Ca2+-dependent catecholamine secretion !1from bovine adrenal medullary chromaffin cells. KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,4,5,9,12,15,16 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$7,11 #modified_site 2-amino-2-methylbutanoic acid #status !8experimental\ !$18 #modified_site leucinol #status experimental SUMMARY #length 18 #molecular-weight 1928 #checksum 4210 SEQUENCE /// ENTRY PC2149 #type complete TITLE trichokindin IIIb - fungus (Trichoderma harzianum) ORGANISM #formal_name Trichoderma harzianum DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2149 REFERENCE PC2144 !$#authors Iida, A.; Sanekata, M.; Fujita, T.; Tanaka, H.; Enoki, A.; !1Fuse, G.; Kanai, M.; Rudewicz, P.J.; Tachikawa, E. !$#journal Chem. Pharm. Bull. (1994) 42:1070-1075 !$#title Fungal metabolites. XVI. Structures of new peptaibols, !1trichokindins I-VII, from the fungus Trichoderma harzianum. !$#cross-references MUID:94349425; PMID:8069958 !$#accession PC2149 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-18 ##label IID COMMENT This protein induces Ca2+-dependent catecholamine secretion !1from bovine adrenal medullary chromaffin cells. KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,4,7,9,12,15,16 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$5,11 #modified_site 2-amino-2-methylbutanoic acid #status !8experimental\ !$18 #modified_site leucinol #status experimental SUMMARY #length 18 #molecular-weight 1928 #checksum 4210 SEQUENCE /// ENTRY PC2150 #type complete TITLE trichokindin IV - fungus (Trichoderma harzianum) ORGANISM #formal_name Trichoderma harzianum DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2150 REFERENCE PC2144 !$#authors Iida, A.; Sanekata, M.; Fujita, T.; Tanaka, H.; Enoki, A.; !1Fuse, G.; Kanai, M.; Rudewicz, P.J.; Tachikawa, E. !$#journal Chem. Pharm. Bull. (1994) 42:1070-1075 !$#title Fungal metabolites. XVI. Structures of new peptaibols, !1trichokindins I-VII, from the fungus Trichoderma harzianum. !$#cross-references MUID:94349425; PMID:8069958 !$#accession PC2150 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-18 ##label IID COMMENT This protein induces Ca2+-dependent catecholamine secretion !1from bovine adrenal medullary chromaffin cells. KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,4,9,11,12,15,16 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$5,7 #modified_site 2-amino-2-methylbutanoic acid #status !8experimental\ !$18 #modified_site isoleucinol #status experimental SUMMARY #length 18 #molecular-weight 1928 #checksum 4210 SEQUENCE /// ENTRY PC2151 #type complete TITLE trichokindin Va - fungus (Trichoderma harzianum) ORGANISM #formal_name Trichoderma harzianum DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2151 REFERENCE PC2144 !$#authors Iida, A.; Sanekata, M.; Fujita, T.; Tanaka, H.; Enoki, A.; !1Fuse, G.; Kanai, M.; Rudewicz, P.J.; Tachikawa, E. !$#journal Chem. Pharm. Bull. (1994) 42:1070-1075 !$#title Fungal metabolites. XVI. Structures of new peptaibols, !1trichokindins I-VII, from the fungus Trichoderma harzianum. !$#cross-references MUID:94349425; PMID:8069958 !$#accession PC2151 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-18 ##label IID KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,4,5,9,12,15,16 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$7,11 #modified_site 2-amino-2-methylbutanoic acid #status !8experimental\ !$18 #modified_site isoleucinol #status experimental SUMMARY #length 18 #molecular-weight 1928 #checksum 4210 SEQUENCE /// ENTRY PC2152 #type complete TITLE trichokindin Vb - fungus (Trichoderma harzianum) ORGANISM #formal_name Trichoderma harzianum DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2152 REFERENCE PC2144 !$#authors Iida, A.; Sanekata, M.; Fujita, T.; Tanaka, H.; Enoki, A.; !1Fuse, G.; Kanai, M.; Rudewicz, P.J.; Tachikawa, E. !$#journal Chem. Pharm. Bull. (1994) 42:1070-1075 !$#title Fungal metabolites. XVI. Structures of new peptaibols, !1trichokindins I-VII, from the fungus Trichoderma harzianum. !$#cross-references MUID:94349425; PMID:8069958 !$#accession PC2152 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-18 ##label IID COMMENT This protein induces Ca2+-dependent catecholamine secretion !1from bovine adrenal medullary chromaffin cells. KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,4,7,9,12,15,16 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$5,11 #modified_site 2-amino-2-methylbutanoic acid #status !8experimental\ !$18 #modified_site isoleucinol #status experimental SUMMARY #length 18 #molecular-weight 1928 #checksum 4210 SEQUENCE /// ENTRY PC2153 #type complete TITLE trichokindin VI - fungus (Trichoderma harzianum) ORGANISM #formal_name Trichoderma harzianum DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2153 REFERENCE PC2144 !$#authors Iida, A.; Sanekata, M.; Fujita, T.; Tanaka, H.; Enoki, A.; !1Fuse, G.; Kanai, M.; Rudewicz, P.J.; Tachikawa, E. !$#journal Chem. Pharm. Bull. (1994) 42:1070-1075 !$#title Fungal metabolites. XVI. Structures of new peptaibols, !1trichokindins I-VII, from the fungus Trichoderma harzianum. !$#cross-references MUID:94349425; PMID:8069958 !$#accession PC2153 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-18 ##label IID COMMENT This protein induces Ca2+-dependent catecholamine secretion !1from bovine adrenal medullary chromaffin cells. KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,4,9,12,15,16 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$5,7,11 #modified_site 2-amino-2-methylbutanoic acid #status !8experimental\ !$18 #modified_site leucinol #status experimental SUMMARY #length 18 #molecular-weight 1928 #checksum 4210 SEQUENCE /// ENTRY PC2154 #type complete TITLE trichokindin VII - fungus (Trichoderma harzianum) ORGANISM #formal_name Trichoderma harzianum DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 20-Oct-2000 ACCESSIONS PC2154 REFERENCE PC2144 !$#authors Iida, A.; Sanekata, M.; Fujita, T.; Tanaka, H.; Enoki, A.; !1Fuse, G.; Kanai, M.; Rudewicz, P.J.; Tachikawa, E. !$#journal Chem. Pharm. Bull. (1994) 42:1070-1075 !$#title Fungal metabolites. XVI. Structures of new peptaibols, !1trichokindins I-VII, from the fungus Trichoderma harzianum. !$#cross-references MUID:94349425; PMID:8069958 !$#accession PC2154 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-18 ##label IID COMMENT This protein induces Ca2+-dependent catecholamine secretion !1from bovine adrenal medullary chromaffin cells. KEYWORDS antibiotic; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,4,9,12,15,16 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$5,7,11 #modified_site 2-amino-2-methylbutanoic acid #status !8experimental\ !$18 #modified_site isoleucinol #status experimental SUMMARY #length 18 #molecular-weight 1928 #checksum 4210 SEQUENCE /// ENTRY A58658 #type complete TITLE hypothetical collagen alpha 2(I) intron 2 protein 2 - chicken ORGANISM #formal_name Gallus gallus #common_name chicken DATE 18-Aug-2000 #sequence_revision 18-Aug-2000 #text_change 18-Aug-2000 ACCESSIONS A58658; B35039 REFERENCE A58658 !$#authors Adams, S.L. !$#submission submitted to the Protein Sequence Database, November 1997 !$#contents correction to B35039 !$#accession A58658 !'##molecule_type DNA !'##residues 1-71 ##label ADA REFERENCE A35039 !$#authors Bennett, V.D.; Adams, S.L. !$#journal J. Biol. Chem. (1990) 265:2223-2230 !$#title Identification of a cartilage-specific promoter within !1intron 2 of the chick alpha2(I) collagen gene. !$#cross-references MUID:90130479; PMID:1688851 !$#accession B35039 !'##molecule_type mRNA !'##residues 1-35,'A',37-39,'H',41-42,'EM',45-53,'V',55-71 ##label BEN !'##cross-references GB:M33383; NID:g211042 !'##note the authors translated the codon AAG for residue 17 as Tyr !'##note this ORF is not translated in GenBank entry CHKA2IC COMMENT This sequence is the translation of a cartilage specific !1alternative transcript of the collagen alpha 2(I) gene. !1There is at no evidence that the transcript is translated. KEYWORDS alternative splicing; cartilage SUMMARY #length 71 #molecular-weight 8145 #checksum 5162 SEQUENCE /// ENTRY PC2348 #type complete TITLE trichokonin V - fungus (Trichoderma koningii) ALTERNATE_NAMES TK-V ORGANISM #formal_name Trichoderma koningii DATE 22-Apr-1995 #sequence_revision 11-Aug-1995 #text_change 20-Oct-2000 ACCESSIONS PC2348 REFERENCE PC2348 !$#authors Huang, Q.; Tezuka, Y.; Kikuchi, T.; Nishi, A.; Tubaki, K.; !1Tanaka, K. !$#journal Chem. Pharm. Bull. (1995) 43:223-229 !$#title Studies on metabolites of mycoparasitic fungi. II. !1Metabolites of Trichoderma koningii. !$#cross-references MUID:95246204; PMID:7728928 !$#accession PC2348 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-19 ##label HUA COMMENT This peptide is an antifungal metabolite. KEYWORDS antibiotic; antifungal; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,3,5,7,9,12,15,16 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$19 #modified_site phenylalaninol #status experimental SUMMARY #length 19 #molecular-weight 2001 #checksum 5845 SEQUENCE /// ENTRY PC2349 #type complete TITLE trichokonin VI - fungus (Trichoderma koningii) ALTERNATE_NAMES gliodeliquescin; TK-VI ORGANISM #formal_name Trichoderma koningii DATE 22-Apr-1995 #sequence_revision 11-Aug-1995 #text_change 20-Oct-2000 ACCESSIONS PC2349 REFERENCE PC2348 !$#authors Huang, Q.; Tezuka, Y.; Kikuchi, T.; Nishi, A.; Tubaki, K.; !1Tanaka, K. !$#journal Chem. Pharm. Bull. (1995) 43:223-229 !$#title Studies on metabolites of mycoparasitic fungi. II. !1Metabolites of Trichoderma koningii. !$#cross-references MUID:95246204; PMID:7728928 !$#accession PC2349 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-20 ##label ACC COMMENT This peptide is an antifungal metabolite. KEYWORDS antibiotic; antifungal; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,3,5,8,10,13,16,17 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$20 #modified_site phenylalaninol #status experimental SUMMARY #length 20 #molecular-weight 2073 #checksum 7405 SEQUENCE /// ENTRY PC2350 #type complete TITLE trichokonin VII - fungus (Trichoderma koningii) ALTERNATE_NAMES TK-VII ORGANISM #formal_name Trichoderma koningii DATE 22-Apr-1995 #sequence_revision 11-Aug-1995 #text_change 20-Oct-2000 ACCESSIONS PC2350 REFERENCE PC2348 !$#authors Huang, Q.; Tezuka, Y.; Kikuchi, T.; Nishi, A.; Tubaki, K.; !1Tanaka, K. !$#journal Chem. Pharm. Bull. (1995) 43:223-229 !$#title Studies on metabolites of mycoparasitic fungi. II. !1Metabolites of Trichoderma koningii. !$#cross-references MUID:95246204; PMID:7728928 !$#accession PC2350 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-20 ##label HUA COMMENT This peptide is an antifungal metabolite. KEYWORDS antibiotic; antifungal; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,3,5,8,10,13,16 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$17 #modified_site 2-amino-2-methylbutanoic acid #status !8experimental\ !$20 #modified_site phenylalaninol #status experimental SUMMARY #length 20 #molecular-weight 2073 #checksum 7405 SEQUENCE /// ENTRY PC2351 #type complete TITLE trichokonin VIII - fungus (Trichoderma koningii) ALTERNATE_NAMES TK-VIII; trichosporin-B IVe ORGANISM #formal_name Trichoderma koningii DATE 22-Apr-1995 #sequence_revision 11-Aug-1995 #text_change 20-Oct-2000 ACCESSIONS PC2351 REFERENCE PC2348 !$#authors Huang, Q.; Tezuka, Y.; Kikuchi, T.; Nishi, A.; Tubaki, K.; !1Tanaka, K. !$#journal Chem. Pharm. Bull. (1995) 43:223-229 !$#title Studies on metabolites of mycoparasitic fungi. II. !1Metabolites of Trichoderma koningii. !$#cross-references MUID:95246204; PMID:7728928 !$#accession PC2351 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-20 ##label HUA COMMENT This peptide is an antifungal metabolite. KEYWORDS antibiotic; antifungal; unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,3,5,6,8,10,13,16, !$17 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$20 #modified_site phenylalaninol #status experimental SUMMARY #length 20 #molecular-weight 2112 #checksum 7543 SEQUENCE /// ENTRY S48094 #type complete TITLE chloramphenicol O-acetyltransferase (EC 2.3.1.28) - synthetic ORGANISM #formal_name synthetic #note cloning vector pMAKC76 engineered and expressed in Escherichia coli DATE 07-May-1995 #sequence_revision 15-Feb-1996 #text_change 20-Oct-2000 ACCESSIONS S48094 REFERENCE S48094 !$#authors Posfai, G.; Koob, M.; Hradecna, Z.; Hasan, N.; Filutowicz, !1M.; Szybalski, W. !$#journal Nucleic Acids Res. (1994) 22:2392-2398 !$#title In vivo excision and amplification of large segments of the !1Escherichia coli genome. !$#cross-references MUID:94310070; PMID:8036169 !$#accession S48094 !'##status nucleic acid sequence not shown; translation not shown !'##molecule_type DNA !'##residues 1-219 ##label POS !'##cross-references EMBL:U08461; NID:g475710; PIDN:AAA73425.1; !1PID:g475711 !'##note nucleotide sequence submitted to the EMBL Data Library, April !11994 KEYWORDS acyltransferase SUMMARY #length 219 #molecular-weight 25662 #checksum 7836 SEQUENCE /// ENTRY I40904 #type complete TITLE chloramphenicol O-acetyltransferase (EC 2.3.1.28) - synthetic ORGANISM #formal_name synthetic #note cloning vector pCG1408 engineered and expressed in Clavibacter xyli subsp. cynodontis DATE 15-Aug-1996 #sequence_revision 16-Aug-1996 #text_change 20-Oct-2000 ACCESSIONS I40904 REFERENCE I40904 !$#authors Taylor, J.; Stearman, R.S.; Uratani, B.B. !$#journal Plasmid (1993) 29:241-244 !$#title Development of a native plasmid as a cloning vector in !1Clavibacter xyli subsp. cynodontis. !$#cross-references MUID:93361581; PMID:7689234 !$#accession I40904 !'##status preliminary; translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-219 ##label TAY !'##cross-references EMBL:U21228; NID:g885956; PIDN:AAA70410.1; !1PID:g885957 KEYWORDS acyltransferase SUMMARY #length 219 #molecular-weight 25564 #checksum 7682 SEQUENCE /// ENTRY I40905 #type complete TITLE beta-lactamase (EC 3.5.2.6) - synthetic ORGANISM #formal_name synthetic #note cloning vector pCG1408 engineered and expressed in Clavibacter xyli subsp. cynodontis DATE 15-Aug-1996 #sequence_revision 16-Aug-1996 #text_change 20-Oct-2000 ACCESSIONS I40905 REFERENCE I40904 !$#authors Taylor, J.; Stearman, R.S.; Uratani, B.B. !$#journal Plasmid (1993) 29:241-244 !$#title Development of a native plasmid as a cloning vector in !1Clavibacter xyli subsp. cynodontis. !$#cross-references MUID:93361581; PMID:7689234 !$#accession I40905 !'##status preliminary; translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-286 ##label RES !'##cross-references EMBL:U21228; NID:g885956; PIDN:AAA70411.1; !1PID:g885958 KEYWORDS hydrolase SUMMARY #length 286 #molecular-weight 31515 #checksum 5209 SEQUENCE /// ENTRY S41975 #type complete TITLE beta-lactamase (EC 3.5.2.6) precursor - synthetic ORGANISM #formal_name synthetic DATE 25-Dec-1994 #sequence_revision 22-Aug-1996 #text_change 20-Oct-2000 ACCESSIONS S41975 REFERENCE A57991 !$#authors Kaestner, K.H.; Montoliu, L.; Kern, H.; Thulke, M.; Schutz, !1G. !$#journal Gene (1994) 148:67-70 !$#title Universal beta-galactosidase cloning vectors for promoter !1analysis and gene targeting. !$#cross-references MUID:95011660; PMID:7926839 !$#accession S41975 !'##status not compared with conceptual translation !'##molecule_type DNA !'##residues 1-286 ##label KAE !'##cross-references EMBL:X76682; NID:g453622; PIDN:CAA54104.1; !1PID:g453623 !'##note submitted to the EMBL Data Library, December 1993 KEYWORDS hydrolase SUMMARY #length 286 #molecular-weight 31557 #checksum 5115 SEQUENCE /// ENTRY S58112 #type complete TITLE catechol 2,3-dioxygenase (EC 1.13.11.2) XylE - synthetic ORGANISM #formal_name synthetic #note gene engineered and expressed in Escherichia coli K12 DATE 13-Jan-1996 #sequence_revision 22-Aug-1996 #text_change 20-Oct-2000 ACCESSIONS S58112 REFERENCE A57992 !$#authors Kahrs, A.F.; Odenbreit, S.; Schmitt, W.; Heuermann, D.; !1Meyer, T.F.; Haas, R. !$#journal Gene (1995) 167:53-57 !$#title An improved TnMax mini-transposon system suitable for !1sequencing, shuttle mutagenesis and gene fusions. !$#cross-references MUID:96144248; PMID:8566811 !$#accession S58112 !'##status not compared with conceptual translation !'##molecule_type DNA !'##residues 1-307 ##label HAA !'##cross-references EMBL:Z50122; NID:g938036; PIDN:CAA90484.1; !1PID:g938038 !'##note submitted to the EMBL Data Library, July 1995 KEYWORDS oxidoreductase SUMMARY #length 307 #molecular-weight 35156 #checksum 7832 SEQUENCE /// ENTRY S58113 #type complete TITLE chloramphenicol O-acetyltransferase (EC 2.3.1.28) - synthetic ORGANISM #formal_name synthetic #note gene engineered and expressed in Escherichia coli K12 DATE 13-Jan-1996 #sequence_revision 22-Aug-1996 #text_change 20-Oct-2000 ACCESSIONS S58113 REFERENCE A57992 !$#authors Kahrs, A.F.; Odenbreit, S.; Schmitt, W.; Heuermann, D.; !1Meyer, T.F.; Haas, R. !$#journal Gene (1995) 167:53-57 !$#title An improved TnMax mini-transposon system suitable for !1sequencing, shuttle mutagenesis and gene fusions. !$#cross-references MUID:96144248; PMID:8566811 !$#accession S58113 !'##status not compared with conceptual translation !'##molecule_type DNA !'##residues 1-219 ##label HAA !'##cross-references EMBL:Z50120; NID:g938036; PIDN:CAA90483.1; !1PID:g938037 !'##note submitted to the EMBL Data Library, July 1995 KEYWORDS acyltransferase SUMMARY #length 219 #molecular-weight 25663 #checksum 7746 SEQUENCE /// ENTRY S58114 #type complete TITLE transposase (EC 6.5.1.-) - synthetic ORGANISM #formal_name synthetic #note gene engineered and expressed in Escherichia coli K12 DATE 13-Jan-1996 #sequence_revision 22-Aug-1996 #text_change 20-Oct-2000 ACCESSIONS S58114 REFERENCE A57992 !$#authors Kahrs, A.F.; Odenbreit, S.; Schmitt, W.; Heuermann, D.; !1Meyer, T.F.; Haas, R. !$#journal Gene (1995) 167:53-57 !$#title An improved TnMax mini-transposon system suitable for !1sequencing, shuttle mutagenesis and gene fusions. !$#cross-references MUID:96144248; PMID:8566811 !$#accession S58114 !'##status not compared with conceptual translation !'##molecule_type DNA !'##residues 1-988 ##label HAA !'##cross-references EMBL:Z50120; NID:g938036; PIDN:CAA90481.1; !1PID:g938041 !'##note submitted to the EMBL Data Library, July 1995 KEYWORDS ligase SUMMARY #length 988 #molecular-weight 111535 #checksum 1013 SEQUENCE /// ENTRY S58115 #type complete TITLE resolvase (EC 6.5.1.-) - synthetic ORGANISM #formal_name synthetic DATE 13-Jan-1996 #sequence_revision 22-Aug-1996 #text_change 20-Oct-2000 ACCESSIONS S58115 REFERENCE A57992 !$#authors Kahrs, A.F.; Odenbreit, S.; Schmitt, W.; Heuermann, D.; !1Meyer, T.F.; Haas, R. !$#journal Gene (1995) 167:53-57 !$#title An improved TnMax mini-transposon system suitable for !1sequencing, shuttle mutagenesis and gene fusions. !$#cross-references MUID:96144248; PMID:8566811 !$#accession S58115 !'##status not compared with conceptual translation !'##molecule_type DNA !'##residues 1-186 ##label HAA !'##cross-references EMBL:Z50120; NID:g938036; PIDN:CAA90478.1; !1PID:g1359487 !'##note submitted to the EMBL Data Library, July 1995 GENETICS !$#start_codon GTG KEYWORDS ligase SUMMARY #length 186 #molecular-weight 21287 #checksum 4334 SEQUENCE /// ENTRY S58116 #type complete TITLE lac repressor - synthetic ORGANISM #formal_name synthetic DATE 13-Jan-1996 #sequence_revision 22-Aug-1996 #text_change 20-Oct-2000 ACCESSIONS S58116 REFERENCE A57992 !$#authors Kahrs, A.F.; Odenbreit, S.; Schmitt, W.; Heuermann, D.; !1Meyer, T.F.; Haas, R. !$#journal Gene (1995) 167:53-57 !$#title An improved TnMax mini-transposon system suitable for !1sequencing, shuttle mutagenesis and gene fusions. !$#cross-references MUID:96144248; PMID:8566811 !$#accession S58116 !'##status not compared with conceptual translation !'##molecule_type DNA !'##residues 1-360 ##label HAA !'##cross-references EMBL:Z50120; NID:g938036; PIDN:CAA90479.1; !1PID:g1359488 !'##note submitted to the EMBL Data Library, July 1995 GENETICS !$#start_codon GTG SUMMARY #length 360 #molecular-weight 38590 #checksum 1939 SEQUENCE /// ENTRY S58134 #type complete TITLE chloramphenicol O-acetyltransferase (EC 2.3.1.28) - synthetic ORGANISM #formal_name synthetic DATE 13-Jan-1996 #sequence_revision 22-Aug-1996 #text_change 20-Oct-2000 ACCESSIONS S58134 REFERENCE A57992 !$#authors Kahrs, A.F.; Odenbreit, S.; Schmitt, W.; Heuermann, D.; !1Meyer, T.F.; Haas, R. !$#journal Gene (1995) 167:53-57 !$#title An improved TnMax mini-transposon system suitable for !1sequencing, shuttle mutagenesis and gene fusions. !$#cross-references MUID:96144248; PMID:8566811 !$#accession S58134 !'##status not compared with conceptual translation !'##molecule_type DNA !'##residues 1-219 ##label HAA !'##cross-references EMBL:Z50143; NID:g938044; PIDN:CAA90506.1; !1PID:g938045 !'##note submitted to the EMBL Data Library, July 1995 KEYWORDS acyltransferase SUMMARY #length 219 #molecular-weight 25663 #checksum 7746 SEQUENCE /// ENTRY S58136 #type complete TITLE chloramphenicol O-acetyltransferase (EC 2.3.1.28) - synthetic ORGANISM #formal_name synthetic DATE 13-Jan-1996 #sequence_revision 22-Aug-1996 #text_change 20-Oct-2000 ACCESSIONS S58136 REFERENCE A57992 !$#authors Kahrs, A.F.; Odenbreit, S.; Schmitt, W.; Heuermann, D.; !1Meyer, T.F.; Haas, R. !$#journal Gene (1995) 167:53-57 !$#title An improved TnMax mini-transposon system suitable for !1sequencing, shuttle mutagenesis and gene fusions. !$#cross-references MUID:96144248; PMID:8566811 !$#accession S58136 !'##status not compared with conceptual translation !'##molecule_type DNA !'##residues 1-219 ##label HAA !'##cross-references EMBL:Z50121; NID:g938042; PIDN:CAA90482.1; !1PID:g938043 !'##note submitted to the EMBL Data Library, July 1995 KEYWORDS acyltransferase SUMMARY #length 219 #molecular-weight 25663 #checksum 7746 SEQUENCE /// ENTRY S58166 #type complete TITLE antirestriction protein ardA - synthetic ORGANISM #formal_name synthetic DATE 13-Jan-1996 #sequence_revision 22-Aug-1996 #text_change 20-Oct-2000 ACCESSIONS S58166 REFERENCE A57993 !$#authors Chilley, P.M.; Wilkins, B.M. !$#journal Microbiology (1995) 141:2157-2164 !$#title Distribution of the ardA family of antirestriction genes on !1conjugative plasmids. !$#cross-references MUID:96118696; PMID:7496527 !$#accession S58166 !'##status not compared with conceptual translation !'##molecule_type DNA !'##residues 1-166 ##label CHI !'##cross-references EMBL:Z34468; NID:g927508; PIDN:CAA84232.1; !1PID:g927509 !'##note submitted to the EMBL Data Library, June 1994 SUMMARY #length 166 #molecular-weight 19247 #checksum 9654 SEQUENCE /// ENTRY I55480 #type complete TITLE hypothetical natriuretic peptide/phage fr coat protein mutant fusion protein - synthetic ORGANISM #formal_name synthetic #note Homo sapiens (man) and phage fr genes engineered and expressed in Escherichia coli DATE 02-Jul-1996 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS I55480 REFERENCE I55480 !$#authors Berzins, V.; Jansone, I.; Skangals, A.; Kalnins, P.; Liepa, !1S.; Baumanis, V. !$#journal J. Biotechnol. (1993) 30:231-243 !$#title High level expression of alpha-human atrial natriuretic !1factor as a fusion polypeptide with phage fr coat protein in !1Escherichia coli. !$#cross-references MUID:93384792; PMID:7764035 !$#accession I55480 !'##status preliminary; translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-161 ##label BER !'##cross-references GB:S66567; NID:g435742; PIDN:AAC60713.1; !1PID:g435743 KEYWORDS fusion protein SUMMARY #length 161 #molecular-weight 17287 #checksum 337 SEQUENCE /// ENTRY S51886 #type complete TITLE hypothetical protein HRX185I.1 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 05-May-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S59162; S51886 REFERENCE S59156 !$#authors Vandenbol, M.; Durand, P.; Portetelle, D.; Hilger, F. !$#journal Yeast (1995) 11:1069-1075 !$#title Sequence analysis of a 44 kb DNA fragment of yeast !1chromosome XV including the Ty1-H3 retrotransposon, the suf1 !1(+) frameshift suppressor gene for tRNA-Gly, the yeast !1transfer RNA-Thr-1a and a delta element. !$#cross-references MUID:96076631; PMID:7502582 !$#accession S59162 !'##status nucleic acid sequence not shown; translation not shown; !1conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-487 ##label VAW !'##cross-references EMBL:Z48149; NID:g663234; PIDN:CAA88149.1; !1PID:g663241 !'##note the nucleotide sequence was submitted to the EMBL Data Library, !1January 1995 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 15L !$#introns 472/2 KEYWORDS pseudogene SUMMARY #length 487 #molecular-weight 56331 #checksum 7570 SEQUENCE /// ENTRY S51887 #type complete TITLE hypothetical protein HRX185I.2 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 05-May-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S59163; S51887 REFERENCE S59156 !$#authors Vandenbol, M.; Durand, P.; Portetelle, D.; Hilger, F. !$#journal Yeast (1995) 11:1069-1075 !$#title Sequence analysis of a 44 kb DNA fragment of yeast !1chromosome XV including the Ty1-H3 retrotransposon, the suf1 !1(+) frameshift suppressor gene for tRNA-Gly, the yeast !1transfer RNA-Thr-1a and a delta element. !$#cross-references MUID:96076631; PMID:7502582 !$#accession S59163 !'##status nucleic acid sequence not shown; translation not shown; !1conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-528 ##label VAW !'##cross-references EMBL:Z48149; NID:g663234; PIDN:CAA88150.1; !1PID:g663242 !'##note the nucleotide sequence was submitted to the EMBL Data Library, !1January 1995 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 15L !$#introns 472/2 KEYWORDS pseudogene SUMMARY #length 528 #molecular-weight 61225 #checksum 6851 SEQUENCE /// ENTRY S57386 #type complete TITLE hypothetical protein orf 00954 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 28-Oct-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S57386 REFERENCE S57374 !$#authors Zumstein, E.; Pearson, B.M.; Kalogeropoulos, A.; Schweizer, !1M. !$#journal Yeast (1995) 11:975-986 !$#title A 29.425 kb segment on the left arm of yeast chromosome XV !1contains more than twice as many unknown as known open !1reading frames. !$#cross-references MUID:96021609; PMID:8533473 !$#accession S57386 !'##status nucleic acid sequence not shown; conceptual translation of !1pseudogene !'##molecule_type DNA !'##residues 1-106 ##label ZUM !'##cross-references EMBL:X83121; NID:g600461; PIDN:CAA58196.1; !1PID:g600475 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 15L KEYWORDS pseudogene SUMMARY #length 106 #molecular-weight 12014 #checksum 2657 SEQUENCE /// ENTRY S57388 #type complete TITLE hypothetical protein orf 00958 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 28-Oct-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S57388; S50423 REFERENCE S57374 !$#authors Zumstein, E.; Pearson, B.M.; Kalogeropoulos, A.; Schweizer, !1M. !$#journal Yeast (1995) 11:975-986 !$#title A 29.425 kb segment on the left arm of yeast chromosome XV !1contains more than twice as many unknown as known open !1reading frames. !$#cross-references MUID:96021609; PMID:8533473 !$#accession S57388 !'##status nucleic acid sequence not shown; conceptual translation of !1pseudogene !'##molecule_type DNA !'##residues 1-107 ##label ZUM !'##cross-references EMBL:X83121; NID:g600461; PIDN:CAA58198.1; !1PID:g600477 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 15L KEYWORDS pseudogene SUMMARY #length 107 #molecular-weight 11764 #checksum 4158 SEQUENCE /// ENTRY S57389 #type complete TITLE hypothetical protein orf 00981 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 28-Oct-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S57389; S50425 REFERENCE S57374 !$#authors Zumstein, E.; Pearson, B.M.; Kalogeropoulos, A.; Schweizer, !1M. !$#journal Yeast (1995) 11:975-986 !$#title A 29.425 kb segment on the left arm of yeast chromosome XV !1contains more than twice as many unknown as known open !1reading frames. !$#cross-references MUID:96021609; PMID:8533473 !$#accession S57389 !'##status nucleic acid sequence not shown; conceptual translation of !1pseudogene !'##molecule_type DNA !'##residues 1-105 ##label ZUM !'##cross-references EMBL:X83121; NID:g600461; PIDN:CAA58200.1; !1PID:g600479 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 15L KEYWORDS pseudogene SUMMARY #length 105 #molecular-weight 11410 #checksum 9437 SEQUENCE /// ENTRY S57390 #type complete TITLE hypothetical protein orf 00986 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 28-Oct-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S57390; S50427 REFERENCE S57374 !$#authors Zumstein, E.; Pearson, B.M.; Kalogeropoulos, A.; Schweizer, !1M. !$#journal Yeast (1995) 11:975-986 !$#title A 29.425 kb segment on the left arm of yeast chromosome XV !1contains more than twice as many unknown as known open !1reading frames. !$#cross-references MUID:96021609; PMID:8533473 !$#accession S57390 !'##status nucleic acid sequence not shown; conceptual translation of !1pseudogene !'##molecule_type DNA !'##residues 1-102 ##label ZUM !'##cross-references EMBL:X83121; NID:g600461; PIDN:CAA58202.1; !1PID:g600481 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 15L KEYWORDS pseudogene SUMMARY #length 102 #molecular-weight 12394 #checksum 9887 SEQUENCE /// ENTRY S59288 #type complete TITLE hypothetical protein orf 1218 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 29-Nov-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S61718; S59288 REFERENCE S61715 !$#authors Mannhaupt, G.; Vetter, I.; Schwarzlose, C.; Mitzel, S.; !1Feldmann, H. !$#journal Yeast (1996) 12:67-76 !$#title Analysis of a 26 kb region on the left arm of yeast !1chromosome XV. !$#cross-references MUID:96381248; PMID:8789261 !$#accession S61718 !'##status nucleic acid sequence not shown; translation not shown; !1conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-156 ##label MAN !'##cross-references EMBL:X91067; NID:g984177; PIDN:CAA62525.1; !1PID:g984181 !'##note the nucleotide sequence was submitted to the EMBL Data Library, !1August 1995 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 15L KEYWORDS pseudogene SUMMARY #length 156 #molecular-weight 18035 #checksum 7651 SEQUENCE /// ENTRY S59290 #type complete TITLE hypothetical protein orf 1224 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 29-Nov-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S61720; S59290 REFERENCE S61715 !$#authors Mannhaupt, G.; Vetter, I.; Schwarzlose, C.; Mitzel, S.; !1Feldmann, H. !$#journal Yeast (1996) 12:67-76 !$#title Analysis of a 26 kb region on the left arm of yeast !1chromosome XV. !$#cross-references MUID:96381248; PMID:8789261 !$#accession S61720 !'##status nucleic acid sequence not shown; translation not shown; !1conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-112 ##label MAN !'##cross-references EMBL:X91067; NID:g984177; PIDN:CAA62527.1; !1PID:g984183 !'##note the nucleotide sequence was submitted to the EMBL Data Library, !1August 1995 GENETICS !$#gene GPD3 !$#map_position 15L KEYWORDS pseudogene SUMMARY #length 112 #molecular-weight 12514 #checksum 6315 SEQUENCE /// ENTRY S59295 #type complete TITLE hypothetical protein orf 1241 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 29-Nov-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S61725; S59295 REFERENCE S61715 !$#authors Mannhaupt, G.; Vetter, I.; Schwarzlose, C.; Mitzel, S.; !1Feldmann, H. !$#journal Yeast (1996) 12:67-76 !$#title Analysis of a 26 kb region on the left arm of yeast !1chromosome XV. !$#cross-references MUID:96381248; PMID:8789261 !$#accession S61725 !'##status nucleic acid sequence not shown; translation not shown; !1conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-102 ##label MAN !'##cross-references EMBL:X91067; NID:g984177; PIDN:CAA62532.1; !1PID:g984188 !'##note the nucleotide sequence was submitted to the EMBL Data Library, !1August 1995 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 15L KEYWORDS pseudogene SUMMARY #length 102 #molecular-weight 12181 #checksum 7373 SEQUENCE /// ENTRY S53038 #type complete TITLE hypothetical protein YM8270.11c - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 08-Jul-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S53038 REFERENCE S53028 !$#authors Devlin, K.; Churcher, C.M. !$#submission submitted to the EMBL Data Library, March 1995 !$#accession S53038 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-83 ##label DEV !'##cross-references EMBL:Z48613; NID:g728645; PIDN:CAA88524.1; !1PID:g728656 !'##experimental_source strain AB972 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 13 KEYWORDS pseudogene SUMMARY #length 83 #molecular-weight 9138 #checksum 2945 SEQUENCE /// ENTRY S53041 #type complete TITLE hypothetical protein YM8270.14c - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 08-Jul-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S53041 REFERENCE S53028 !$#authors Devlin, K.; Churcher, C.M. !$#submission submitted to the EMBL Data Library, March 1995 !$#accession S53041 !'##molecule_type DNA !'##residues 1-98 ##label DEV !'##cross-references EMBL:Z48613; NID:g728645; PIDN:CAA88527.1; !1PID:g728659 !'##experimental_source strain AB972 GENETICS !$#map_position 13 KEYWORDS pseudogene SUMMARY #length 98 #molecular-weight 11693 #checksum 3609 SEQUENCE /// ENTRY S50402 #type complete TITLE hypothetical protein YM9375.15 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 13-Jan-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S50402 REFERENCE S50388 !$#authors Badcock, K.; Churcher, C. !$#submission submitted to the EMBL Data Library, December 1994 !$#accession S50402 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-70 ##label BAD !'##cross-references EMBL:Z47071; NID:g606429; PIDN:CAA87360.1; !1PID:g606444 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 13R KEYWORDS pseudogene SUMMARY #length 70 #molecular-weight 8091 #checksum 3194 SEQUENCE /// ENTRY S50928 #type complete TITLE hypothetical protein YM9646.12c - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 10-Feb-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S50928 REFERENCE S50917 !$#authors Pearson, D.; Bowman, S. !$#submission submitted to the EMBL Data Library, January 1995 !$#accession S50928 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-90 ##label PEA !'##cross-references EMBL:Z47815; NID:g642280; PIDN:CAA87821.1; !1PID:g642292 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 13R KEYWORDS pseudogene SUMMARY #length 90 #molecular-weight 10317 #checksum 8143 SEQUENCE /// ENTRY S54017 #type complete TITLE hypothetical protein YM9711.04 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 08-Jul-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S54017 REFERENCE S54014 !$#authors Lye, G.; Churcher, C.M. !$#submission submitted to the EMBL Data Library, May 1995 !$#accession S54017 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-83 ##label LYE !'##cross-references EMBL:Z49211; NID:g798922; PIDN:CAA89118.1; !1PID:g798926 !'##experimental_source strain AB972 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 13R KEYWORDS pseudogene SUMMARY #length 83 #molecular-weight 9345 #checksum 4460 SEQUENCE /// ENTRY S54022 #type complete TITLE hypothetical protein YM9711.10c - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 08-Jul-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S54022 REFERENCE S54014 !$#authors Lye, G.; Churcher, C.M. !$#submission submitted to the EMBL Data Library, May 1995 !$#accession S54022 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-88 ##label LYE !'##cross-references EMBL:Z49211; NID:g798922; PIDN:CAA89123.1; !1PID:g798931 !'##experimental_source strain AB972 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 13R KEYWORDS pseudogene SUMMARY #length 88 #molecular-weight 10425 #checksum 8387 SEQUENCE /// ENTRY S53070 #type complete TITLE hypothetical protein YM9920.02c - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 08-Jul-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S53070 REFERENCE S53069 !$#authors Hunt, S.; Bowman, S. !$#submission submitted to the EMBL Data Library, March 1995 !$#accession S53070 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-61 ##label HUN !'##cross-references EMBL:Z48639; NID:g732924; PIDN:CAA88575.1; !1PID:g732926 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 13R !$#introns 30/3 KEYWORDS pseudogene SUMMARY #length 61 #molecular-weight 6906 #checksum 5405 SEQUENCE /// ENTRY S53071 #type complete TITLE hypothetical protein YM9920.03c - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 08-Jul-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S53071 REFERENCE S53069 !$#authors Hunt, S.; Bowman, S. !$#submission submitted to the EMBL Data Library, March 1995 !$#accession S53071 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-55 ##label HUN !'##cross-references EMBL:Z48639; NID:g732924; PIDN:CAA88576.1; !1PID:g732927 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 13R !$#introns 24/3 KEYWORDS pseudogene SUMMARY #length 55 #molecular-weight 6309 #checksum 5922 SEQUENCE /// ENTRY S49808 #type complete TITLE hypothetical protein YM9958.10 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 13-Jan-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S49808 REFERENCE S49800 !$#authors Devlin, K.; Churcher, C. !$#submission submitted to the EMBL Data Library, November 1994 !$#accession S49808 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-110 ##label DEV !'##cross-references EMBL:Z46729; NID:g577134; PIDN:CAA86723.1; !1PID:g577144 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 13 KEYWORDS pseudogene SUMMARY #length 110 #molecular-weight 11880 #checksum 7141 SEQUENCE /// ENTRY S53949 #type complete TITLE hypothetical protein YM9973.06 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 08-Jul-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S53949 REFERENCE S53944 !$#authors Bowman, S. !$#submission submitted to the EMBL Data Library, May 1995 !$#accession S53949 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-96 ##label BOW !'##cross-references EMBL:Z49213; NID:g798952; PIDN:CAA89148.1; !1PID:g798958 !'##experimental_source strain AB972 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 13R KEYWORDS pseudogene SUMMARY #length 96 #molecular-weight 11258 #checksum 6048 SEQUENCE /// ENTRY S61652 #type complete TITLE hypothetical protein YOR3162c - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 09-Mar-1996 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S61652 REFERENCE S61643 !$#authors Benes, V.; Andrade, M.A.; Rechmann, S.; Teodoru, C.; !1Banrevi, A.; Sander, C.; Valencia, A.; Ansorge, W.; Voss, H. !$#submission submitted to the EMBL Data Library, December 1995 !$#description Nucleotide sequence and analysis of a 130 kb fragment of !1yeast chromosome XV. !$#accession S61652 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-326 ##label BEN !'##cross-references EMBL:X94335; NID:g1262139; PIDN:CAA64013.1; !1PID:g1164938 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 15R KEYWORDS pseudogene SUMMARY #length 326 #molecular-weight 36135 #checksum 5 SEQUENCE /// ENTRY S07396 #type complete TITLE hypothetical protein clone CB15A-2D - yeast (Saccharomyces cerevisiae) ALTERNATE_NAMES hypothetical 15K protein ORGANISM #formal_name Saccharomyces cerevisiae DATE 23-Apr-1993 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S07396 REFERENCE S07396 !$#authors Warmington, J.R.; Green, R.P.; Newlon, C.S.; Oliver, S.G. !$#journal Nucleic Acids Res. (1987) 15:8963-8982 !$#title Polymorphisms on the right arm of yeast chromosome III !1associated with Ty transposition and recombination events. !$#cross-references MUID:88067708; PMID:2825123 !$#accession S07396 !'##status translation not shown; conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-133 ##label WAR !'##cross-references EMBL:X07388; NID:g4282; PIDN:CAA30298.1; PID:g4283 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 3R KEYWORDS pseudogene SUMMARY #length 133 #molecular-weight 15303 #checksum 8948 SEQUENCE /// ENTRY S58337 #type complete TITLE hypothetical protein orf 6161 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 13-Jan-1996 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S58337 REFERENCE S58318 !$#authors Pearson, B.M.; Hernando, Y.; Wolf, S.S.; Kalogeropoulos, A.; !1Schweizer, M. !$#submission submitted to the EMBL Data Library, August 1995 !$#accession S58337 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-130 ##label PEA !'##cross-references EMBL:X90565; NID:g940836; PIDN:CAA62182.1; !1PID:g940858 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 15R KEYWORDS pseudogene SUMMARY #length 130 #molecular-weight 14736 #checksum 622 SEQUENCE /// ENTRY S62170 #type complete TITLE hypothetical protein OR26.24 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 10-Apr-1996 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S62170 REFERENCE S54617 !$#authors de Haan, M.; Maarse, A.C.; Grivell, L.A. !$#submission submitted to the EMBL Data Library, May 1995 !$#accession S62170 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-112 ##label DEH !'##cross-references EMBL:X87331; NID:g1041652; PIDN:CAA60750.1; !1PID:g1041656 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 15R KEYWORDS pseudogene SUMMARY #length 112 #molecular-weight 12976 #checksum 1326 SEQUENCE /// ENTRY S62173 #type complete TITLE hypothetical protein OR26.27 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 10-Apr-1996 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S62173 REFERENCE S54617 !$#authors de Haan, M.; Maarse, A.C.; Grivell, L.A. !$#submission submitted to the EMBL Data Library, May 1995 !$#accession S62173 !'##molecule_type DNA !'##residues 1-118 ##label DEH !'##cross-references EMBL:X87331; NID:g1041652; PIDN:CAA60753.1; !1PID:g1041659 GENETICS !$#map_position 15R KEYWORDS pseudogene SUMMARY #length 118 #molecular-weight 13265 #checksum 4858 SEQUENCE /// ENTRY S62174 #type complete TITLE hypothetical protein OR26.28 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 10-Apr-1996 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S62174 REFERENCE S54617 !$#authors de Haan, M.; Maarse, A.C.; Grivell, L.A. !$#submission submitted to the EMBL Data Library, May 1995 !$#accession S62174 !'##molecule_type DNA !'##residues 1-146 ##label DEH !'##cross-references EMBL:X87331; NID:g1041652; PIDN:CAA60754.1; !1PID:g1041660 GENETICS !$#map_position 15R KEYWORDS pseudogene SUMMARY #length 146 #molecular-weight 16249 #checksum 9820 SEQUENCE /// ENTRY S59275 #type complete TITLE hypothetical protein PPR1 5'-region - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 29-Nov-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S59275 REFERENCE S59270 !$#authors Saville, S.P.; Atkinson, S.; Jamieson, L.; Pocklington, !1M.J.; Orr, E. !$#submission submitted to the EMBL Data Library, August 1995 !$#description A 7.8kb fragment from chromosome XII of Saccharomyces !1cerevisiae does not harbour PKC2. !$#accession S59275 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-128 ##label SAV !'##cross-references EMBL:X90564; NID:g975221; PIDN:CAA62159.1; !1PID:g975227 !'##experimental_source strain S288C COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 12 KEYWORDS pseudogene SUMMARY #length 128 #molecular-weight 14151 #checksum 6717 SEQUENCE /// ENTRY S61022 #type complete TITLE hypothetical protein SRP68 internal orf - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 15-Feb-1996 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S61022 REFERENCE S61010 !$#authors Pohl, T.M. !$#submission submitted to the EMBL Data Library, November 1995 !$#accession S61022 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-115 ##label POH !'##cross-references EMBL:Z67751; NID:g1061234; PIDN:CAA91602.1; !1PID:g1061247 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 16 KEYWORDS pseudogene SUMMARY #length 115 #molecular-weight 13042 #checksum 5941 SEQUENCE /// ENTRY S57707 #type complete TITLE hypothetical protein orf 107 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 19-Oct-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S57707 REFERENCE S57680 !$#authors van der Aart, Q.J.M.; Kleine, K.; Steensma, H.Y. !$#submission submitted to the EMBL Data Library, June 1995 !$#description Sequence analysis of the 43 KB !1CRM1-YLM9-PET54-SMI1-PHO81-YHB4-PFK1 region from the right !1arm of Saccharomyces cerevisiae chromosome VII. !$#accession S57707 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-107 ##label VAN !'##cross-references EMBL:X87941; NID:g886908; PIDN:CAA61192.1; !1PID:g886936 !'##experimental_source strain S288C COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 7R KEYWORDS pseudogene SUMMARY #length 107 #molecular-weight 12494 #checksum 4508 SEQUENCE /// ENTRY S59318 #type complete TITLE hypothetical protein orf L3118 (L3116 internal orf) - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 29-Nov-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S59318 REFERENCE S59313 !$#authors Delius, H. !$#submission submitted to the EMBL Data Library, June 1995 !$#description 36.8 kb of S.cerevisiae chromosome XII including ACE2, CKI1, !1PDC5, SLS1, PUT1 and tRNA-Asp. !$#accession S59318 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-183 ##label DEL !'##cross-references EMBL:X91258; NID:g995686; PIDN:CAA62641.1; !1PID:g995692 !'##experimental_source strain S288C COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 12R KEYWORDS pseudogene SUMMARY #length 183 #molecular-weight 19788 #checksum 1043 SEQUENCE /// ENTRY S59321 #type complete TITLE hypothetical protein L3125 (L3123 internal orf) - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 29-Nov-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S59321 REFERENCE S59313 !$#authors Delius, H. !$#submission submitted to the EMBL Data Library, June 1995 !$#description 36.8 kb of S.cerevisiae chromosome XII including ACE2, CKI1, !1PDC5, SLS1, PUT1 and tRNA-Asp. !$#accession S59321 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-101 ##label DEL !'##cross-references EMBL:X91258; NID:g995686; PIDN:CAA62644.1; !1PID:g995695 !'##experimental_source strain S288C COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 12R KEYWORDS pseudogene SUMMARY #length 101 #molecular-weight 11185 #checksum 5350 SEQUENCE /// ENTRY S59325 #type complete TITLE hypothetical protein L3135 (L3133 internal orf) - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 29-Nov-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S59325 REFERENCE S59313 !$#authors Delius, H. !$#submission submitted to the EMBL Data Library, June 1995 !$#description 36.8 kb of S.cerevisiae chromosome XII including ACE2, CKI1, !1PDC5, SLS1, PUT1 and tRNA-Asp. !$#accession S59325 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-105 ##label DEL !'##cross-references EMBL:X91258; NID:g995686; PIDN:CAA62648.1; !1PID:g995699 !'##experimental_source strain S288C COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 12R KEYWORDS pseudogene SUMMARY #length 105 #molecular-weight 11784 #checksum 949 SEQUENCE /// ENTRY S59326 #type complete TITLE hypothetical protein L3137 (L3133 internal orf) - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 29-Nov-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S59326 REFERENCE S59313 !$#authors Delius, H. !$#submission submitted to the EMBL Data Library, June 1995 !$#description 36.8 kb of S.cerevisiae chromosome XII including ACE2, CKI1, !1PDC5, SLS1, PUT1 and tRNA-Asp. !$#accession S59326 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-193 ##label DEL !'##cross-references EMBL:X91258; NID:g995686; PIDN:CAA62649.1; !1PID:g995700 !'##experimental_source strain S288C COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 12R KEYWORDS pseudogene SUMMARY #length 193 #molecular-weight 22781 #checksum 9392 SEQUENCE /// ENTRY S59331 #type complete TITLE hypothetical protein L3151 (L3149 internal orf) - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 29-Nov-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S59331 REFERENCE S59313 !$#authors Delius, H. !$#submission submitted to the EMBL Data Library, June 1995 !$#description 36.8 kb of S.cerevisiae chromosome XII including ACE2, CKI1, !1PDC5, SLS1, PUT1 and tRNA-Asp. !$#accession S59331 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-103 ##label DEL !'##cross-references EMBL:X91258; NID:g995686; PIDN:CAA62654.1; !1PID:g995705 !'##experimental_source strain S288C COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 12R KEYWORDS pseudogene SUMMARY #length 103 #molecular-weight 11343 #checksum 416 SEQUENCE /// ENTRY S59332 #type complete TITLE hypothetical protein L3153 (L3149 internal orf) - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 29-Nov-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S59332 REFERENCE S59313 !$#authors Delius, H. !$#submission submitted to the EMBL Data Library, June 1995 !$#description 36.8 kb of S.cerevisiae chromosome XII including ACE2, CKI1, !1PDC5, SLS1, PUT1 and tRNA-Asp. !$#accession S59332 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-111 ##label DEL !'##cross-references EMBL:X91258; NID:g995686; PIDN:CAA62655.1; !1PID:g995706 !'##experimental_source strain S288C COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 12R KEYWORDS pseudogene SUMMARY #length 111 #molecular-weight 11980 #checksum 295 SEQUENCE /// ENTRY S59333 #type complete TITLE hypothetical protein L3155 (L3149 internal orf) - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 29-Nov-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S59333 REFERENCE S59313 !$#authors Delius, H. !$#submission submitted to the EMBL Data Library, June 1995 !$#description 36.8 kb of S.cerevisiae chromosome XII including ACE2, CKI1, !1PDC5, SLS1, PUT1 and tRNA-Asp. !$#accession S59333 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-112 ##label DEL !'##cross-references EMBL:X91258; NID:g995686; PIDN:CAA62656.1; !1PID:g995707 !'##experimental_source strain S288C COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 12R KEYWORDS pseudogene SUMMARY #length 112 #molecular-weight 13520 #checksum 5962 SEQUENCE /// ENTRY S59334 #type complete TITLE hypothetical protein L3157 (L3149 internal orf) - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 29-Nov-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S59334 REFERENCE S59313 !$#authors Delius, H. !$#submission submitted to the EMBL Data Library, June 1995 !$#description 36.8 kb of S.cerevisiae chromosome XII including ACE2, CKI1, !1PDC5, SLS1, PUT1 and tRNA-Asp. !$#accession S59334 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-109 ##label DEL !'##cross-references EMBL:X91258; NID:g995686; PIDN:CAA62657.1; !1PID:g995708 !'##experimental_source strain S288C COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 12R KEYWORDS pseudogene SUMMARY #length 109 #molecular-weight 13204 #checksum 5005 SEQUENCE /// ENTRY S59338 #type complete TITLE hypothetical protein L3167 (L3165 internal orf) - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 29-Nov-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S59338 REFERENCE S59313 !$#authors Delius, H. !$#submission submitted to the EMBL Data Library, June 1995 !$#description 36.8 kb of S.cerevisiae chromosome XII including ACE2, CKI1, !1PDC5, SLS1, PUT1 and tRNA-Asp. !$#accession S59338 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-124 ##label DEL !'##cross-references EMBL:X91258; NID:g995686; PIDN:CAA62661.1; !1PID:g995712 !'##experimental_source strain S288C COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 12R KEYWORDS pseudogene SUMMARY #length 124 #molecular-weight 13772 #checksum 4042 SEQUENCE /// ENTRY S55848 #type complete TITLE hypothetical protein YBR0503 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 27-Oct-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S55848 REFERENCE S55846 !$#authors Aljinovic, G.; Pohl, T.M. !$#journal Yeast (1995) 11:475-479 !$#title Sequence and analysis of 24 kb on chromosome II of !1Saccharomyces cerevisiae. !$#cross-references MUID:95321020; PMID:7597852 !$#accession S55848 !'##status nucleic acid sequence not shown; translation not shown; !1conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-109 ##label ALJ !'##cross-references EMBL:Z46260; NID:g559942; PIDN:CAA86392.1; !1PID:g559945 !'##note the nucleotide sequence was submitted to the EMBL Data Library, !1October 1994 COMMENT There is no evidence that this sequence is expressed. KEYWORDS pseudogene SUMMARY #length 109 #molecular-weight 13046 #checksum 4898 SEQUENCE /// ENTRY S57549 #type complete TITLE hypothetical protein YP9531.09 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 10-Oct-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S57549 REFERENCE S57541 !$#authors Bowman, S. !$#submission submitted to the EMBL Data Library, June 1995 !$#accession S57549 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-94 ##label BOW !'##cross-references EMBL:Z49919; NID:g887584; PIDN:CAA90160.1; !1PID:g887593 !'##experimental_source strain AB972 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 16R KEYWORDS pseudogene SUMMARY #length 94 #molecular-weight 10699 #checksum 1044 SEQUENCE /// ENTRY S42162 #type complete TITLE hypothetical PHO80 mutant protein - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 13-Jan-1995 #sequence_revision 05-Sep-1996 #text_change 20-Oct-2000 ACCESSIONS S42162 REFERENCE S42162 !$#authors Gilliquet, V.; Legrain, M.; Berben, G.; Hilger, F. !$#journal Gene (1990) 96:181-188 !$#title Negative regulatory elements of the Saccharomyces cerevisiae !1PHO system: interaction between PHO80 and PHO85 proteins. !$#cross-references MUID:91099674; PMID:2269431 !$#accession S42162 !'##molecule_type DNA !'##residues 1-77 ##label GIL !'##cross-references EMBL:M35087; EMBL:M60624; NID:g172159; !1PIDN:AAA34869.1; PID:g172160 SUMMARY #length 77 #molecular-weight 8719 #checksum 6748 SEQUENCE /// ENTRY A58505 #type fragment TITLE interleukin-1 beta - synthetic (fragment) ORGANISM #formal_name synthetic #note Mus musculus (house mouse) gene engineered and expressed in Escherichia coli DATE 08-Jun-1990 #sequence_revision 13-Feb-1997 #text_change 20-Oct-2000 ACCESSIONS A58505 REFERENCE A27627 !$#authors Huang, J.J.; Newton, R.C.; Rutledge, S.J.; Horuk, R.; !1Matthew, J.B.; Covington, M.; Lin, Y. !$#journal J. Immunol. (1988) 140:3838-3843 !$#title Characterization of murine IL-1-beta. Isolation, expression, !1and purification. !$#cross-references MUID:88229074; PMID:2967326 !$#accession A58505 !'##molecule_type DNA !'##residues 1-23 ##label HUA !'##cross-references GB:M20874; NID:g208638; PIDN:AAA72669.1; !1PID:g208639 FEATURE !$2-23 #region interleukin-1 beta (fragment) SUMMARY #length 23 #checksum 1506 SEQUENCE /// ENTRY S00849 #type fragment TITLE hypothetical transforming protein myc homolog ORF - yeast (Saccharomyces cerevisiae) (fragment) ORGANISM #formal_name Saccharomyces cerevisiae DATE 07-Sep-1990 #sequence_revision 27-Feb-1997 #text_change 20-Oct-2000 ACCESSIONS S00849 REFERENCE S00849 !$#authors Sarid, J.; Leder, P. !$#journal Nucleic Acids Res. (1988) 16:4725 !$#title Sequence analysis of a yeast genomic DNA fragment sharing !1homology with the human c-myc gene. !$#cross-references MUID:88247776; PMID:3288972 !$#accession S00849 !'##molecule_type DNA !'##residues 1-88 ##label SAR !'##cross-references EMBL:X07858; NID:g3561; PIDN:CAA30706.1; !1PID:g930265 COMMENT This sequence is not thought to be translated. SUMMARY #length 88 #checksum 3108 SEQUENCE /// ENTRY S42226 #type complete TITLE hypothetical large surface antigen/mevalonate kinase (EC 2.7.1.36) mutant fusion protein - hepatitis B virus ORGANISM #formal_name hepatitis B virus, HBV DATE 13-Jan-1995 #sequence_revision 17-Mar-1997 #text_change 20-Oct-2000 ACCESSIONS S42226 REFERENCE S42226 !$#authors Graef, E.; Caselmann, W.H.; Wells, J.; Koshy, R. !$#journal Oncogene (1994) 9:81-87 !$#title Insertional activation of mevalonate kinase by hepatitis B !1virus DNA in a human hepatoma cell line. !$#cross-references MUID:94134441; PMID:8302606 !$#accession S42226 !'##molecule_type mRNA !'##residues 1-557 ##label GRA !'##cross-references EMBL:X75311; NID:g450345; PIDN:CAA53059.1; !1PID:g450346 KEYWORDS phosphotransferase FEATURE !$1-157 #region hepatitis B virus large surface antigen !8(fragment)\ !$162-557 #region human mevalonate kinase (fragment) SUMMARY #length 557 #molecular-weight 60008 #checksum 238 SEQUENCE /// ENTRY T44820 #type complete TITLE bacteriorhodopsin [imported] - synthetic ORGANISM #formal_name synthetic DATE 21-Jul-2000 #sequence_revision 21-Jul-2000 #text_change 21-Jul-2000 ACCESSIONS T44820 REFERENCE Z22853 !$#authors Pompejus, M.; Friedrich, K.; Teufel, M.; Fritz, H.J. !$#journal Eur. J. Biochem. (1993) 211:27-35 !$#title High-yield production of bacteriorhodopsin via expression of !1a synthetic gene in Escherichia coli. !$#cross-references MUID:93145957; PMID:7916683 !$#accession T44820 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-259 ##label POM !'##cross-references EMBL:X70259; GB:S54191; PID:g312844; !1PIDN:CAA49762.1 SUMMARY #length 259 #molecular-weight 28007 #checksum 1692 SEQUENCE /// ENTRY T44821 #type complete TITLE bacteriorhodopsin [imported] - synthetic ORGANISM #formal_name synthetic DATE 21-Jul-2000 #sequence_revision 21-Jul-2000 #text_change 21-Jul-2000 ACCESSIONS T44821 REFERENCE Z22854 !$#authors Nassal, M.; Mogi, T.; Karnik, S.S.; Khorana, H.G. !$#journal J. Biol. Chem. (1987) 262:9264-9270 !$#title Structure-function studies on bacteriorhodopsin: III. Total !1synthesis of a gene for bacterio-opsin and its expression in !1Escherichia Coli. !$#cross-references MUID:87250575; PMID:3036852 !$#accession T44821 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-249 ##label NAS !'##cross-references EMBL:J02755; GB:M19098; PID:g208054; !1PIDN:AAA72184.1 SUMMARY #length 249 #molecular-weight 26931 #checksum 2161 SEQUENCE /// ENTRY S29331 #type fragment TITLE hypothetical glutamate dehydrogenase (NAD(P)+) pseudogene 2 - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 05-May-2000 #sequence_revision 05-May-2000 #text_change 28-Jul-2000 ACCESSIONS S29331 REFERENCE S29331 !$#authors Michaelidis, T. !$#submission submitted to the EMBL Data Library, May 1992 !$#accession S29331 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-66 ##label MIW !'##cross-references EMBL:X66315; NID:g31817; GB:X66313; NID:g31816; !1GB:X66319; NID:g31818 !'##experimental_source tissue placenta !'##note this translation is from Fig. 5B of reference A94195 REFERENCE A94195 !$#authors Mavrothalassitis, G.; Tzimagiorgis, G.; Mitsialis, A.; !1Zannis, V.; Plaitakis, A.; Papamatheakis, J.; Moschonas, N. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1988) 85:3494-3498 !$#title Isolation and characterization of cDNA clones encoding human !1liver glutamate dehydrogenase: evidence for a small gene !1family. !$#cross-references MUID:88217927; PMID:3368458 !$#contents annotation COMMENT This sequence is not thought to be translated. GENETICS !$#gene GDB:GLUDP2; GDH2 !'##cross-references GDB:137195 !$#map_position 10q11.2-10q11.2 KEYWORDS pseudogene SUMMARY #length 66 #checksum 615 SEQUENCE /// ENTRY T46004 #type complete TITLE probable pseudogene T10K17.30 - Arabidopsis thaliana ORGANISM #formal_name Arabidopsis thaliana #common_name mouse-ear cress DATE 21-Jul-2000 #sequence_revision 21-Jul-2000 #text_change 21-Jul-2000 ACCESSIONS T46004 REFERENCE Z23019 !$#authors Benes, V.; Wurmbach, E.; Drzonek, H.; Ansorge, W.; Mewes, !1H.W.; Lemcke, K.; Mayer, K.F.X.; Quetier, F.; Salanoubat, M. !$#submission submitted to the Protein Sequence Database, January 2000 !$#accession T46004 !'##molecule_type DNA !'##residues 1-89 ##label BEN !'##cross-references EMBL:AL132977; NID:g6434223; PIDN:CAB67610.1 !'##experimental_source cultivar Columbia; BAC clone T10K17 GENETICS !$#map_position 3 !$#introns 34/2 !$#note T10K17.30 SUMMARY #length 89 #molecular-weight 10147 #checksum 8317 SEQUENCE /// ENTRY T36044 #type complete TITLE probable thiamin biosynthesis protein thiC truncated pseudogene SCD78.05 - Streptomyces coelicolor ORGANISM #formal_name Streptomyces coelicolor DATE 21-Jul-2000 #sequence_revision 21-Jul-2000 #text_change 21-Jul-2000 ACCESSIONS T36044 REFERENCE Z21595 !$#authors Saunders, D.C.; Harris, D.; Bentley, S.D.; Parkhill, J.; !1Barrell, B.G.; Rajandream, M.A. !$#submission submitted to the EMBL Data Library, November 1998 !$#accession T36044 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-43 ##label SAU !'##cross-references EMBL:AL034355; PIDN:CAA22210.1; GSPDB:GN00070; !1SCOEDB:SCD78.05 !'##experimental_source strain A3(2) GENETICS !$#gene thiC'; SCOEDB:SCD78.05 SUMMARY #length 43 #molecular-weight 4735 #checksum 244 SEQUENCE /// ENTRY I68622 #type fragment TITLE hypothetical myelin proteolipid protein frameshift mutant - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 16-Jun-2000 #sequence_revision 16-Jun-2000 #text_change 16-Jun-2000 ACCESSIONS I68622; I52517 REFERENCE I54350 !$#authors Pham-Dinh, D.; Boespflug-Tanguy, O.; Mimault, C.; Cavagna, !1A.; Giraud, G.; Leberre, G.; Lemarec, B.; Dautigny, A. !$#journal Hum. Mol. Genet. (1993) 2:465-467 !$#title Pelizaeus-Merzbacher disease: a frameshift deletion/ !1insertion event in the myelin proteolipid gene. !$#cross-references MUID:93278399; PMID:7684945 !$#accession I68622 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-41 ##label PHA !'##cross-references GB:S62117; NID:g385445; PIDN:AAB26928.1; !1PID:g385446 REFERENCE I52517 !$#authors Otterbach, B.; Stoffel, W.; Ramaekers, V. !$#journal Biol. Chem. Hoppe-Seyler (1993) 374:75-83 !$#title A novel mutation in the proteolipid protein gene leading to !1Pelizaeus-Merzbacher disease. !$#cross-references MUID:93176327; PMID:7679906 !$#accession I52517 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 15-38 ##label OTT !'##cross-references GB:S55837; NID:g266110; PIDN:AAD13880.1; !1PID:g4261580 COMMENT This sequence represents a frameshift mutation at a position !1corresponding to residue 196 in myelin proteolipid protein, !1see PIR:MPHUPL. GENETICS !$#gene GDB:PLP !'##cross-references GDB:120302; OMIM:312080 !$#map_position Xq22-Xq22 SUMMARY #length 41 #checksum 5893 SEQUENCE /// ENTRY S60192 #type fragment TITLE probable glutamate dehydrogenase (NAD(P)+) pseudogene 2 - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 05-May-2000 #sequence_revision 05-May-2000 #text_change 28-Jul-2000 ACCESSIONS S60192 REFERENCE S10769 !$#authors Amuro, N.; Goto, Y.; Okazaki, T. !$#journal Biochim. Biophys. Acta (1990) 1049:216-218 !$#title Isolation and characterization of the two distinct genes for !1human glutamate dehydrogenase. !$#cross-references MUID:90304226; PMID:2364112 !$#accession S60192 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-66 ##label AMU !'##cross-references EMBL:X53147; NID:g31703; GB:X53148; NID:g31704; !1GB:X53149; NID:g31705 REFERENCE A94195 !$#authors Mavrothalassitis, G.; Tzimagiorgis, G.; Mitsialis, A.; !1Zannis, V.; Plaitakis, A.; Papamatheakis, J.; Moschonas, N. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1988) 85:3494-3498 !$#title Isolation and characterization of cDNA clones encoding human !1liver glutamate dehydrogenase: evidence for a small gene !1family. !$#cross-references MUID:88217927; PMID:3368458 !$#contents annotation COMMENT Although this sequence has been identified as a hypothetical !1translation of a probable pseudogene, its identity with !1GDB:GLUDP2 is not certain. GENETICS !$#gene GDB:GLUDP2; GDH2 !'##cross-references GDB:137195 !$#map_position 10q11.2-10q11.2 !$#introns 27/1; 45/3 KEYWORDS pseudogene SUMMARY #length 66 #checksum 9551 SEQUENCE /// ENTRY A27279 #type complete TITLE hypothetical valine-pyruvate transaminase (mistranslated) - Escherichia coli ORGANISM #formal_name Escherichia coli DATE 19-May-2000 #sequence_revision 19-May-2000 #text_change 19-May-2000 ACCESSIONS A27279 REFERENCE A27279 !$#authors Liu, L.; Whalen, W.; Das, A.; Berg, C.M. !$#journal Nucleic Acids Res. (1987) 15:9461-9469 !$#title Rapid sequencing of cloned DNA using a transposon for !1bidirectional priming: sequence of the Escherichia coli K-12 !1avtA gene. !$#cross-references MUID:88067768; PMID:2825136 !$#accession A27279 !'##molecule_type DNA !'##residues 1-226 ##label LIU !'##cross-references GB:Y00490; NID:g41040; PIDN:CAA68546.1; PID:g41041 COMMENT This translation is not correct. For the translation in the !1correct reading frame of the reverse complementary !1nucleotide sequence see PIR:B27279. GENETICS !$#gene avtA !$#map_position 84 min SUMMARY #length 226 #molecular-weight 24753 #checksum 3424 SEQUENCE /// ENTRY I54079 #type fragment TITLE hypothetical EWSR1/FLI1 mutant fusion protein, type 2 - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 21-Feb-1997 #sequence_revision 21-Feb-1997 #text_change 02-Jun-2000 ACCESSIONS I54079 REFERENCE I54079 !$#authors Bhagirath, T.; Abe, S.; Nojima, T.; Yoshida, M.C. !$#journal Genes Chromosomes Cancer (1995) 13:126-132 !$#title Molecular analysis of a t(11;22) translocation junction in a !1case of Ewing's sarcoma. !$#cross-references MUID:95352541; PMID:7542907 !$#accession I54079 !'##status translated from GB/EMBL/DDBJ !'##molecule_type mRNA !'##residues 1-51 ##label BHA !'##cross-references GB:S78802; NID:g1042061; PIDN:AAB34992.1; !1PID:g1042062 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene EWSR1/FLI1; EWS/FLI-1 !$#map_position 22q12/11q24 KEYWORDS fusion protein SUMMARY #length 51 #checksum 2251 SEQUENCE /// ENTRY S42435 #type complete TITLE UPD-glucose-4-epimerase pseudogene NMA0190 - Neisseria meningitidis ORGANISM #formal_name Neisseria meningitidis DATE 07-May-1998 #sequence_revision 09-Jul-1998 #text_change 09-Jun-2000 ACCESSIONS S42435; D82013 REFERENCE S42430 !$#authors Hammerschmidt, S.; Birkholz, C.; Zaehringer, U.; Robertson, !1B.D.; van Putten, J.; Ebeling, O.; Frosch, M. !$#journal Mol. Microbiol. (1994) 11:885-896 !$#title Contribution of genes from the capsule gene complex (cps) to !1lipooligosaccharide biosynthesis and serum resistance in !1Neisseria meningitidis. !$#cross-references MUID:94293762; PMID:8022265 !$#accession S42435 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-213 ##label HAM !'##cross-references EMBL:L09189; NID:g1098474 REFERENCE A81775 !$#authors Parkhill, J.; Achtman, M.; James, K.D.; Bentley, S.D.; !1Churcher, C.; Klee, S.R.; Morelli, G.; Basham, D.; Brown, !1D.; Chillingworth, T.; Davies, R.M.; Davis, P.; Devlin, K.; !1Feltwell, T.; Hamlin, N.; Holroyd, S.; Jagels, K.; Leather, !1S.; Moule, S.; Mungall, K.; Quail, M.A.; Rajandream, M.A.; !1Rutherford, K.M.; Simmonds, M.; Skelton, J.; Whitehead, S.; !1Spratt, B.G.; Barrell, B.G. !$#journal Nature (2000) 404:502-506 !$#title Complete DNA sequence of a serogroup A strain of Neisseria !1menigitidis Z2491. !$#cross-references MUID:20222556; PMID:10761919 !$#accession D82013 !'##molecule_type DNA !'##residues 9-87,'P',89-160,'Y',162,'V',164-173,'FY',176-193,'A', !1195-213 ##label PAR !'##cross-references GB:AL162752; GB:AL157959; NID:g7378778; !1PIDN:CAB83505.1; PID:g7378962; GSPDB:GN00124; NMASP:NMA0190 !'##experimental_source serogroup A, strain Z2491 !'##note this hypothetical sequence reported by the Neisseria !1meningitidis genome sequencing project had been shown in !1reference S42430 to be transcriptionally inactive GENETICS !$#gene galE2'; NMA0190 KEYWORDS pseudogene SUMMARY #length 213 #molecular-weight 23623 #checksum 8143 SEQUENCE /// ENTRY S25497 #type complete TITLE thymidine kinase (EC 2.7.1.21) mutant PR3 - equine herpesvirus 1 ORGANISM #formal_name equine herpesvirus 1 DATE 09-Jun-1994 #sequence_revision 17-Mar-1997 #text_change 02-Jun-2000 ACCESSIONS S25497 REFERENCE S25496 !$#authors Corrochano, L.M.; Madueno, F.; Field, H.J.; de la Fuente, R. !$#submission submitted to the EMBL Data Library, August 1992 !$#description DNA sequence analysis of thymidine kinase defective mutants !1of equine herpesvirus-1 (EHV-1). !$#accession S25497 !'##molecule_type DNA !'##residues 1-352 ##label COR !'##cross-references EMBL:X67962; NID:g59211; PIDN:CAA48145.1; !1PID:g59212 KEYWORDS ATP; phosphotransferase SUMMARY #length 352 #molecular-weight 38723 #checksum 1823 SEQUENCE /// ENTRY S14968 #type complete TITLE hypothetical NADH dehydrogenase chain 4 homolog - Synechocystis sp. (strain PCC 6803) ALTERNATE_NAMES ndhD protein-like protein ORGANISM #formal_name Synechocystis sp. #variety PCC 6803 DATE 15-Oct-1998 #sequence_revision 15-Oct-1998 #text_change 02-Jun-2000 ACCESSIONS S14968 REFERENCE S14966 !$#authors Anderson, S.L.; McIntosh, L. !$#journal Plant Mol. Biol. (1991) 16:487-499 !$#title Partial conservation of the 5' ndhE-psaC-ndhD 3' gene !1arrangement of chloroplasts in the cyanobacterium !1Synechocystis sp. PCC 6803: implications for NDH-D function !1in cyanobacteria and chloroplasts. !$#cross-references MUID:91329685; PMID:1907869 !$#accession S14968 !'##molecule_type DNA !'##residues 1-91 ##label AND !'##cross-references EMBL:X53842; NID:g47594; PIDN:CAA37837.1; !1PID:g581748 !'##experimental_source PCC 6803 !'##note the authors translated the initiation codon GTG as Val COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. !1The sequence is similar to a sequence translated from the !1common tobacco chloroplast (see PIR:DENTN4). GENETICS !$#start_codon GTG SUMMARY #length 91 #molecular-weight 10494 #checksum 2463 SEQUENCE /// ENTRY S58320 #type complete TITLE hypothetical protein orf 6101 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 13-Jan-1996 #sequence_revision 05-Sep-1996 #text_change 02-Jun-2000 ACCESSIONS S71988; S58320 REFERENCE S71986 !$#authors Pearson, B.M.; Hernando, Y.; Payne, J.; Wolf, S.S.; !1Kalogeropoulos, A.; Schweizer, M. !$#journal Yeast (1996) 12:1021-1031 !$#title Sequencing of a 35.71 kb DNA segment on the right arm of !1yeast chromosome XV reveals regions of similarity to !1chromosomes I and XIII. !$#cross-references MUID:97051589; PMID:8896266 !$#accession S71988 !'##status nucleic acid sequence not shown; translation not shown; !1conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-214 ##label PEA !'##cross-references EMBL:X90565; NID:g940836; PIDN:CAA62163.1; !1PID:g940839 !'##note the nucleotide sequence was submitted to the EMBL Data Library, !1August 1995 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 15R KEYWORDS pseudogene SUMMARY #length 214 #molecular-weight 23152 #checksum 2957 SEQUENCE /// ENTRY S58332 #type complete TITLE hypothetical protein orf 6150 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 13-Jan-1996 #sequence_revision 05-Sep-1996 #text_change 02-Jun-2000 ACCESSIONS S72002; S58332 REFERENCE S71986 !$#authors Pearson, B.M.; Hernando, Y.; Payne, J.; Wolf, S.S.; !1Kalogeropoulos, A.; Schweizer, M. !$#journal Yeast (1996) 12:1021-1031 !$#title Sequencing of a 35.71 kb DNA segment on the right arm of !1yeast chromosome XV reveals regions of similarity to !1chromosomes I and XIII. !$#cross-references MUID:97051589; PMID:8896266 !$#accession S72002 !'##status nucleic acid sequence not shown; translation not shown; !1conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-121 ##label PEA !'##cross-references EMBL:X90565; NID:g940836; PIDN:CAA62177.1; !1PID:g940853 !'##note the nucleotide sequence was submitted to the EMBL Data Library, !1August 1995 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 15R KEYWORDS pseudogene SUMMARY #length 121 #molecular-weight 13252 #checksum 1729 SEQUENCE /// ENTRY S58335 #type complete TITLE hypothetical protein orf 6157 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 13-Jan-1996 #sequence_revision 05-Sep-1996 #text_change 02-Jun-2000 ACCESSIONS S72005; S58335 REFERENCE S71986 !$#authors Pearson, B.M.; Hernando, Y.; Payne, J.; Wolf, S.S.; !1Kalogeropoulos, A.; Schweizer, M. !$#journal Yeast (1996) 12:1021-1031 !$#title Sequencing of a 35.71 kb DNA segment on the right arm of !1yeast chromosome XV reveals regions of similarity to !1chromosomes I and XIII. !$#cross-references MUID:97051589; PMID:8896266 !$#accession S72005 !'##status nucleic acid sequence not shown; translation not shown; !1conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-132 ##label PEA !'##cross-references EMBL:X90565; NID:g940836; PIDN:CAA62180.1; !1PID:g940856 !'##note the nucleotide sequence was submitted to the EMBL Data Library, !1August 1995 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 15R KEYWORDS pseudogene SUMMARY #length 132 #molecular-weight 13888 #checksum 7772 SEQUENCE /// ENTRY S58340 #type complete TITLE hypothetical protein orf 6169 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 13-Jan-1996 #sequence_revision 05-Sep-1996 #text_change 02-Jun-2000 ACCESSIONS S72010; S58340 REFERENCE S71986 !$#authors Pearson, B.M.; Hernando, Y.; Payne, J.; Wolf, S.S.; !1Kalogeropoulos, A.; Schweizer, M. !$#journal Yeast (1996) 12:1021-1031 !$#title Sequencing of a 35.71 kb DNA segment on the right arm of !1yeast chromosome XV reveals regions of similarity to !1chromosomes I and XIII. !$#cross-references MUID:97051589; PMID:8896266 !$#accession S72010 !'##status preliminary; nucleic acid sequence not shown; translation not !1shown !'##molecule_type DNA !'##residues 1-107 ##label PEA !'##cross-references EMBL:X90565; NID:g940836; PIDN:CAA62185.1; !1PID:g940861 !'##note the nucleotide sequence was submitted to the EMBL Data Library, !1August 1995 GENETICS !$#map_position 15R KEYWORDS pseudogene SUMMARY #length 107 #molecular-weight 12494 #checksum 4273 SEQUENCE /// ENTRY S63446 #type complete TITLE hypothetical protein cosmid pEOA461 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 16-May-1996 #sequence_revision 05-Sep-1996 #text_change 02-Jun-2000 ACCESSIONS S71984; S63446 REFERENCE S71978 !$#authors Casamayor, A.; Khalid, H.; Balcells, L.; Aldea, M.; Casas, !1C.; Herrero, E.; Arino, J. !$#journal Yeast (1996) 12:1013-1020 !$#title Sequence analysis of a 13.4 kbp fragment from the left arm !1of chromosome XV reveals a malate dehydrogenase gene, a !1putative Ser/Thr protein kinase, the ribosomal L25 gene and !1four new open reading frames. !$#cross-references MUID:97051588; PMID:8896265 !$#accession S71984 !'##status nucleic acid sequence not shown; translation not shown; !1conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-131 ##label CAS !'##cross-references EMBL:U41293; NID:g1209710; PIDN:AAC49468.1; !1PID:g1209717 !'##experimental_source strain FY1679 !'##note the nucleotide sequence was submitted to the EMBL Data Library, !1November 1995 COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 15L KEYWORDS pseudogene SUMMARY #length 131 #molecular-weight 14680 #checksum 2416 SEQUENCE /// ENTRY S01973 #type complete TITLE hypothetical L-serine dehydratase inactive splice form 2 - rat ALTERNATE_NAMES hypothetical serine deaminase ORGANISM #formal_name Rattus norvegicus #common_name Norway rat DATE 23-Jul-1998 #sequence_revision 23-Jul-1998 #text_change 02-Jun-2000 ACCESSIONS S01973; A35582 REFERENCE S01973 !$#authors Ogawa, H.; Fujioka, M.; Matsuda, Y.; Su, Y.; Dunn, T.; !1Miller, D.A.; Pitot, H.C. !$#journal Nucleic Acids Res. (1988) 16:10921-10923 !$#title Sequence of the rat serine dehydratase gene. !$#cross-references MUID:89083514; PMID:3205731 !$#accession S01973 !'##molecule_type DNA !'##residues 1-363 ##label OGA1 !'##cross-references EMBL:X13119; GB:M38617; NID:g57226; !1PIDN:CAA31511.1; PID:g57227 REFERENCE A35582 !$#authors Ogawa, H.; Miller, D.A.; Dunn, T.; Su, Y.; Burcham, J.M.; !1Peraino, C.; Fujioka, M.; Babcock, K.; Pitot, H.C. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1988) 85:5809-5813 !$#title Isolation and nucleotide sequence of the cDNA for rat liver !1serine dehydratase mRNA and structures of the 5' and 3' !1flanking regions of the serine dehydratase gene. !$#cross-references MUID:88320333; PMID:3413060 !$#accession A35582 !'##molecule_type mRNA !'##residues 1-363 ##label OGA2 !'##cross-references GB:J03863; GB:M38618; NID:g206878; PIDN:AAA42123.1; !1PID:g206879 COMMENT This sequence has been revised (see PIR:A37817). The correct !1minor splice form is thought to be enzymatically inactive !1because of premature termination. For the active splice !1form, see PIR:DWRTT. GENETICS !$#introns 51/3; 65/1; 147/3; 178/2; 254/2; 296/1 KEYWORDS alternative splicing SUMMARY #length 363 #molecular-weight 38432 #checksum 1219 SEQUENCE /// ENTRY T07378 #type complete TITLE probable hydroxymethylglutaryl-CoA reductase (NADPH) pseudogene - potato ALTERNATE_NAMES HMG-CoA reductase ORGANISM #formal_name Solanum tuberosum #common_name potato DATE 13-Aug-1999 #sequence_revision 13-Aug-1999 #text_change 19-May-2000 ACCESSIONS T07378 REFERENCE S56710 !$#authors Bhattacharyya, M.K.; Paiva, N.L.; Dixon, R.A.; Korth, K.L.; !1Stermer, B.A. !$#journal Plant Mol. Biol. (1995) 28:1-15 !$#title Features of the hmg 1 subfamily of genes encoding HMG-CoA !1reductase in potato. !$#cross-references MUID:95306778; PMID:7787174 !$#accession T07378 !'##status translated from GB/EMBL/DDBJ; conceptual translation of !1pseudogene !'##molecule_type DNA !'##residues 1-59 ##label BHA !'##cross-references EMBL:L34829; NID:g514957; PIDN:AAC37436.1; !1PID:g529523 !'##experimental_source cv. Lemhi GENETICS KEYWORDS pseudogene SUMMARY #length 59 #molecular-weight 6631 #checksum 6740 SEQUENCE /// ENTRY I41144 #type complete TITLE aspartate ammonia-lyase (EC 4.3.1.1), mutagenized - Escherichia coli (strain J2) ORGANISM #formal_name Escherichia coli DATE 14-May-1999 #sequence_revision 14-May-1999 #text_change 19-May-2000 ACCESSIONS I41144 REFERENCE I41144 !$#authors Zhang, H.Y.; Lin, L.; Du, W.Y.; Lu, J. !$#journal Biochem. Biophys. Res. Commun. (1993) 192:15-21 !$#title Enhancement of the stability and activity of aspartase by !1random and site-directed mutagenesis. !$#cross-references MUID:93236566; PMID:8476416 !$#accession I41144 !'##status nucleic acid sequence not shown; translation not shown; !1translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-477 ##label ZHA !'##cross-references GB:L20944; NID:g516604; PIDN:AAA23499.1; !1PID:g516605 !'##experimental_source strain J2 COMMENT This sequence is not from the wild-type strain J2 but was !1produced after extensive mutagenesis. KEYWORDS ammonia-lyase; carbon-nitrogen lyase SUMMARY #length 477 #molecular-weight 52436 #checksum 3201 SEQUENCE /// ENTRY A49016 #type fragment TITLE gag-junD mutant fusion protein - avian endogenous virus (fragment) ORGANISM #formal_name avian endogenous virus DATE 19-Feb-1999 #sequence_revision 19-Feb-1999 #text_change 19-May-2000 ACCESSIONS A49016 REFERENCE A49016 !$#authors Hartl, M.; Vogt, P.K. !$#journal Cell Growth Differ. (1992) 3:909-918 !$#title A rearranged junD transforms chicken embryo fibroblasts. !$#cross-references MUID:93112566; PMID:1472471 !$#accession A49016 !'##molecule_type DNA !'##residues 1-32 ##label HAR !'##cross-references GB:S51472; NID:g262711; PIDN:AAB24751.1; !1PID:g262712 !'##experimental_source chicken !'##note sequence extracted from NCBI backbone (NCBIN:121581, !1NCBIN:121583, NCBIP:121584) !'##note in Genbank entry S51471S2, release 109, the source is !1designated as JDV virus FEATURE !$1-25 #region retrovirus-related gag polyprotein\ !$26-32 #region junD encoded SUMMARY #length 32 #checksum 9268 SEQUENCE /// ENTRY JT0745 #type fragment TITLE hypothetical translation 5-aminolevulinate synthase gene promoter region - rat (fragment) ORGANISM #formal_name Rattus norvegicus #common_name Norway rat DATE 18-Feb-2000 #sequence_revision 18-Feb-2000 #text_change 02-Jun-2000 ACCESSIONS JT0745 REFERENCE JT0745 !$#authors Yomogida, K.; Yamamoto, M.; Yamagami, T.; Fujita, H.; !1Hayashi, N. !$#journal J. Biochem. (1993) 113:364-371 !$#title Structure and expression of the gene encoding rat !1nonspecific form delta-aminolevulinate synthase. !$#cross-references MUID:93252759; PMID:8486608 !$#accession JT0745 !'##molecule_type DNA !'##residues 1-34 ##label YOM !'##cross-references GB:S60453; NID:g300228; PID:g423621 COMMENT This sequence is not thought to be translated. SUMMARY #length 34 #checksum 5447 SEQUENCE /// ENTRY I55278 #type fragment TITLE hypothetical malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) tandem duplication mutant - mouse (fragment) ALTERNATE_NAMES malic enzyme ORGANISM #formal_name Mus musculus #common_name house mouse DATE 02-Jul-1996 #sequence_revision 08-Nov-1996 #text_change 19-May-2000 ACCESSIONS I55278 REFERENCE I55278 !$#authors Brown, M.L.; Wise, L.S.; Rubin, C.S. !$#journal J. Biol. Chem. (1988) 263:4494-4499 !$#title The molecular basis for a cystolic malic enzyme null !1mutation: Malic enzyme mRNA from MOD-1 null mice contains an !1internal in-frame duplication that extends the coding !1sequence by 522 nucleotides. !$#cross-references MUID:88153780; PMID:3346258 !$#accession I55278 !'##status translation not shown; translated from GB/EMBL/DDBJ !'##molecule_type mRNA !'##residues 1-332 ##label BRO !'##cross-references GB:M29546; GB:M29547; NID:g199018; PIDN:AAA39488.1; !1PID:g199019 FEATURE !$1-100 #region segment 417-516\ !$101-274 #region segment 343-516 SUMMARY #length 332 #checksum 6039 SEQUENCE /// ENTRY S37459 #type fragment TITLE self-incompatability glycoprotein, mutant non-functional allele - Peruvian tomato (fragment) ORGANISM #formal_name Lycopersicon peruvianum #common_name Peruvian tomato DATE 06-Jan-1995 #sequence_revision 31-Jan-1997 #text_change 19-May-2000 ACCESSIONS S37459 REFERENCE A58473 !$#authors Royo, J.; Kunz, C.; Kowyama, Y.; Anderson, M.; Clarke, A.E.; !1Newbigin, E. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1994) 91:6511-6514 !$#title Loss of a histidine residue at the active site of S-locus !1ribonuclease is associated with self-compatibility in !1Lycopersicon peruvianum. !$#cross-references MUID:94294411; PMID:8022814 !$#accession S37459 !'##molecule_type mRNA !'##residues 1-218 ##label ROY !'##cross-references EMBL:Z26581; NID:g404333; PIDN:CAA81332.1; !1PID:g404334 !'##experimental_source strain LA 2157; style tissue !'##note submitted to the EMBL Data Library, September 1993 !'##note part of this sequence, including the amino end of the mature !1protein, was determined by protein sequencing !'##note the source is designated as Solanum peruvianum KEYWORDS angiosperm reproduction; glycoprotein FEATURE !$1-17 #domain signal sequence (fragment) #status predicted !8#label SIG\ !$18-218 #product self-incompatability glycoprotein #status !8predicted #label MAT\ !$46,56 #binding_site carbohydrate (Asn) (covalent) #status !8predicted SUMMARY #length 218 #checksum 4171 SEQUENCE /// ENTRY S07342 #type complete TITLE hypothetical hemoglobin alpha chain pseudogene - horse ALTERNATE_NAMES hemoglobin theta-1 chain ORGANISM #formal_name Equus caballus #common_name domestic horse DATE 01-Dec-1993 #sequence_revision 17-Mar-1997 #text_change 19-May-2000 ACCESSIONS S07342 REFERENCE S07342 !$#authors Clegg, J.B. !$#journal Nature (1987) 329:465-466 !$#title Can the product of the theta gene be a real globin? !$#cross-references MUID:88014185; PMID:3657962 !$#accession S07342 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-142 ##label CLE !'##cross-references EMBL:Y00284; NID:g1061; PIDN:CAA68394.1; PID:g1062 !'##experimental_source clone psi-PGG2, haplotype BII COMMENT There is no evidence that this gene is expressed. GENETICS !$#gene HBpsi-alpha; HBtheta1 !$#introns 32/2; 100/3 KEYWORDS pseudogene SUMMARY #length 142 #molecular-weight 15554 #checksum 3582 SEQUENCE /// ENTRY S32195 #type complete TITLE hypothetical protein orf100 - liverwort (Marchantia polymorpha) mitochondrion ORGANISM #formal_name mitochondrion Marchantia polymorpha DATE 31-Dec-1993 #sequence_revision 17-Mar-1997 #text_change 19-May-2000 ACCESSIONS S32195 REFERENCE S32195 !$#authors Yamato, K.; Nozato, N.; Oda, K.; Ohta, E.; Takemura, M.; !1Akashi, K.; Ohyama, K. !$#journal Curr. Genet. (1993) 23:526-531 !$#title Occurrence and transcription of genes for nad1, nad3, nad4L, !1and nad6, coding for NADH dehydrogenase subunits 1, 3, 4L, !1and 6, in liverwort mitochondria. !$#cross-references MUID:93306762; PMID:7916672 !$#accession S32195 !'##status not compared with conceptual translation !'##molecule_type DNA !'##residues 1-100 ##label YAM !'##cross-references GB:S64010; NID:g404355; PIDN:AAB27397.1; !1PID:g404356 GENETICS !$#genome mitochondrion KEYWORDS mitochondrion SUMMARY #length 100 #molecular-weight 11535 #checksum 5741 SEQUENCE /// ENTRY S25496 #type complete TITLE thymidine kinase (EC 2.7.1.21) truncation mutant PR1 - equine herpesvirus 1 ORGANISM #formal_name equine herpesvirus 1 DATE 09-Jun-1994 #sequence_revision 17-Mar-1997 #text_change 19-May-2000 ACCESSIONS S25496 REFERENCE S25496 !$#authors Corrochano, L.M.; Madueno, F.; Field, H.J.; de la Fuente, R. !$#submission submitted to the EMBL Data Library, August 1992 !$#description DNA sequence analysis of thymidine kinase defective mutants !1of equine herpesvirus-1 (EHV-1). !$#accession S25496 !'##molecule_type DNA !'##residues 1-59 ##label COR !'##cross-references EMBL:X67963; NID:g59209; PIDN:CAA48146.1; !1PID:g59210 KEYWORDS ATP; phosphotransferase SUMMARY #length 59 #molecular-weight 6056 #checksum 5785 SEQUENCE /// ENTRY S41423 #type fragment TITLE DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) mutant A - Mycobacterium smegmatis (fragment) ALTERNATE_NAMES DNA gyrase chain A ORGANISM #formal_name Mycobacterium smegmatis DATE 06-Jan-1995 #sequence_revision 17-Mar-1997 #text_change 19-May-2000 ACCESSIONS S41423 REFERENCE S41421 !$#authors Revel, V.; Cambau, E.; Jarlier, V.; Sougakoff, W. !$#submission submitted to the EMBL Data Library, January 1994 !$#description Characterization of mutations involved in resistance to !1fluoroquinolones in Mycobacterium smegmatis. !$#accession S41423 !'##molecule_type DNA !'##residues 1-36 ##label REV !'##cross-references EMBL:X77227; NID:g452281; PIDN:CAA54444.1; !1PID:g452282 !'##note mutant resistant to fluoroquinolones COMMENT For the wild type sequence see PIR:S41421. KEYWORDS ATP; DNA binding; DNA replication; isomerase SUMMARY #length 36 #checksum 1476 SEQUENCE /// ENTRY S41422 #type fragment TITLE DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) mutants B and C - Mycobacterium smegmatis (fragment) ALTERNATE_NAMES DNA gyrase chain A ORGANISM #formal_name Mycobacterium smegmatis DATE 06-Jan-1995 #sequence_revision 17-Mar-1997 #text_change 19-May-2000 ACCESSIONS S41422 REFERENCE S41421 !$#authors Revel, V.; Cambau, E.; Jarlier, V.; Sougakoff, W. !$#submission submitted to the EMBL Data Library, January 1994 !$#description Characterization of mutations involved in resistance to !1fluoroquinolones in Mycobacterium smegmatis. !$#accession S41422 !'##molecule_type DNA !'##residues 1-36 ##label REV !'##cross-references EMBL:X77228; NID:g452279; PIDN:CAA54445.1; !1PID:g452280 !'##note this sequence incorrectly shows two mutations each conferring !1resistance to fluoroquinolones COMMENT For the wild type sequence see PIR:S41421. KEYWORDS ATP; DNA binding; DNA replication; isomerase SUMMARY #length 36 #checksum 1452 SEQUENCE /// ENTRY S41424 #type fragment TITLE DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) mutants D and E - Mycobacterium smegmatis (fragment) ALTERNATE_NAMES DNA gyrase chain A ORGANISM #formal_name Mycobacterium smegmatis DATE 06-Jan-1995 #sequence_revision 17-Mar-1997 #text_change 19-May-2000 ACCESSIONS S41424 REFERENCE S41421 !$#authors Revel, V.; Cambau, E.; Jarlier, V.; Sougakoff, W. !$#submission submitted to the EMBL Data Library, January 1994 !$#description Characterization of mutations involved in resistance to !1fluoroquinolones in Mycobacterium smegmatis. !$#accession S41424 !'##molecule_type DNA !'##residues 1-36 ##label REV !'##cross-references EMBL:X77229; NID:g452283; PIDN:CAA54446.1; !1PID:g452284 !'##note this sequence incorrectly shows two mutations each conferring !1resistance to fluoroquinolones (see S41421) COMMENT For the wild type sequence see PIR:S41421. KEYWORDS ATP; DNA binding; DNA replication; isomerase SUMMARY #length 36 #checksum 1494 SEQUENCE /// ENTRY S53133 #type complete TITLE probable pre-core protein pseudogene - hepatitis B virus (isolate Tarisioc) ORGANISM #formal_name hepatitis B virus, HBV DATE 08-Jul-1995 #sequence_revision 17-Mar-1997 #text_change 19-May-2000 ACCESSIONS S53133 REFERENCE S53112 !$#authors Lai, M.E.; Mazzoleni, A.P.; Porru, A.; Balestrieri, A. !$#submission submitted to the EMBL Data Library, March 1995 !$#accession S53133 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-27 ##label LAI !'##cross-references EMBL:X85255; NID:g736009; PIDN:CAA59516.1; !1PID:g736011 KEYWORDS pseudogene SUMMARY #length 27 #molecular-weight 3062 #checksum 9031 SEQUENCE /// ENTRY S53139 #type complete TITLE probable pre-core protein pseudogene - hepatitis B virus (isolate Frailis92) ORGANISM #formal_name hepatitis B virus, HBV DATE 08-Jul-1995 #sequence_revision 17-Mar-1997 #text_change 19-May-2000 ACCESSIONS S53139 REFERENCE S53112 !$#authors Lai, M.E.; Mazzoleni, A.P.; Porru, A.; Balestrieri, A. !$#submission submitted to the EMBL Data Library, March 1995 !$#accession S53139 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-27 ##label LAI !'##cross-references EMBL:X85265; NID:g736017; PIDN:CAA59543.1; !1PID:g736019 KEYWORDS pseudogene SUMMARY #length 27 #molecular-weight 3108 #checksum 9096 SEQUENCE /// ENTRY S53168 #type complete TITLE probable pre-core protein pseudogene - hepatitis B virus (isolate Muresu89) ORGANISM #formal_name hepatitis B virus, HBV DATE 08-Jul-1995 #sequence_revision 17-Mar-1997 #text_change 19-May-2000 ACCESSIONS S53168 REFERENCE S53112 !$#authors Lai, M.E.; Mazzoleni, A.P.; Porru, A.; Balestrieri, A. !$#submission submitted to the EMBL Data Library, March 1995 !$#accession S53168 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-27 ##label LAI !'##cross-references EMBL:X85275; NID:g736057; PIDN:CAA59570.1; !1PID:g736059 KEYWORDS pseudogene SUMMARY #length 27 #molecular-weight 2997 #checksum 8931 SEQUENCE /// ENTRY S53151 #type complete TITLE probable pre-core protein pseudogene - hepatitis B virus (isolate Tufariello89) ORGANISM #formal_name hepatitis B virus, HBV DATE 08-Jul-1995 #sequence_revision 17-Mar-1997 #text_change 19-May-2000 ACCESSIONS S53151 REFERENCE S53112 !$#authors Lai, M.E.; Mazzoleni, A.P.; Porru, A.; Balestrieri, A. !$#submission submitted to the EMBL Data Library, March 1995 !$#accession S53151 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-27 ##label LAI !'##cross-references EMBL:X85269; NID:g736033; PIDN:CAA59555.1; !1PID:g736035 KEYWORDS pseudogene SUMMARY #length 27 #molecular-weight 3081 #checksum 8771 SEQUENCE /// ENTRY S53154 #type complete TITLE probable pre-core protein pseudogene - hepatitis B virus (isolate Usai89) ORGANISM #formal_name hepatitis B virus, HBV DATE 08-Jul-1995 #sequence_revision 17-Mar-1997 #text_change 19-May-2000 ACCESSIONS S53154 REFERENCE S53112 !$#authors Lai, M.E.; Mazzoleni, A.P.; Porru, A.; Balestrieri, A. !$#submission submitted to the EMBL Data Library, March 1995 !$#accession S53154 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-27 ##label LAI !'##cross-references EMBL:X85270; NID:g736037; PIDN:CAA59558.1; !1PID:g736039 KEYWORDS pseudogene SUMMARY #length 27 #molecular-weight 2978 #checksum 8819 SEQUENCE /// ENTRY S53213 #type complete TITLE probable pre-core protein pseudogene - hepatitis B virus (isolate Castag-2) ORGANISM #formal_name hepatitis B virus, HBV DATE 08-Jul-1995 #sequence_revision 17-Mar-1997 #text_change 19-May-2000 ACCESSIONS S53213 REFERENCE S53112 !$#authors Lai, M.E.; Mazzoleni, A.P.; Porru, A.; Balestrieri, A. !$#submission submitted to the EMBL Data Library, March 1995 !$#accession S53213 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-27 ##label LAI !'##cross-references EMBL:X85292; NID:g736120; PIDN:CAA59613.1; !1PID:g736122 KEYWORDS pseudogene SUMMARY #length 27 #molecular-weight 3096 #checksum 9206 SEQUENCE /// ENTRY S53128 #type complete TITLE probable pre-core protein pseudogene - hepatitis B virus ORGANISM #formal_name hepatitis B virus, HBV DATE 08-Jul-1995 #sequence_revision 17-Mar-1997 #text_change 19-May-2000 ACCESSIONS S53128 REFERENCE S53112 !$#authors Lai, M.E.; Mazzoleni, A.P.; Porru, A.; Balestrieri, A. !$#submission submitted to the EMBL Data Library, March 1995 !$#accession S53128 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-27 ##label LAI !'##cross-references EMBL:X85254; NID:g736003; PIDN:CAA59511.1; !1PID:g736005 !'##note the isolate is not identified in GenBank entry HBVPRES12, !1release 113.0 KEYWORDS pseudogene SUMMARY #length 27 #molecular-weight 3136 #checksum 9098 SEQUENCE /// ENTRY S53259 #type complete TITLE probable pre-core protein pseudogene - hepatitis B virus (isolate Mannoni-3) ORGANISM #formal_name hepatitis B virus, HBV DATE 08-Jul-1995 #sequence_revision 17-Mar-1997 #text_change 19-May-2000 ACCESSIONS S53259 REFERENCE S53112 !$#authors Lai, M.E.; Mazzoleni, A.P.; Porru, A.; Balestrieri, A. !$#submission submitted to the EMBL Data Library, March 1995 !$#accession S53259 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-27 ##label LAI !'##cross-references EMBL:X85311; NID:g736187; PIDN:CAA59654.1; !1PID:g736189 KEYWORDS pseudogene SUMMARY #length 27 #molecular-weight 3044 #checksum 8823 SEQUENCE /// ENTRY S31866 #type complete TITLE Ig gamma-1 chain C region - synthetic ORGANISM #formal_name synthetic #note Homo sapiens (man) gene engineered and expressed in Escherichia coli DATE 06-Jan-1995 #sequence_revision 17-Mar-1997 #text_change 19-May-2000 ACCESSIONS S31866 REFERENCE S31866 !$#authors Filpula, D. !$#submission submitted to the EMBL Data Library, February 1993 !$#description Screeing method for protein-protein interactions of cloned !1gene products. !$#accession S31866 !'##molecule_type mRNA !'##residues 1-255 ##label FIL !'##cross-references EMBL:X70421; NID:g33068; PIDN:CAA49866.1; !1PID:g33069 KEYWORDS immunoglobulin FEATURE !$1-22 #region Escherichia coli outer membrane protein A !8precursor\ !$23-255 #region human Ig gamma-1 chain C region SUMMARY #length 255 #molecular-weight 28325 #checksum 2783 SEQUENCE /// ENTRY B34912 #type fragment TITLE hypothetical protein ftr 5'-region - Methanobacterium thermoautotrophicum (strain Delta H) (fragment) ORGANISM #formal_name Methanobacterium thermoautotrophicum DATE 16-Apr-1999 #sequence_revision 16-Apr-1999 #text_change 19-May-2000 ACCESSIONS B34912 REFERENCE A34912 !$#authors DiMarco, A.A.; Sment, K.A.; Konisky, J.; Wolfe, R.S. !$#journal J. Biol. Chem. (1990) 265:472-476 !$#title The formylmethanofuran:tetrahydromethanopterin !1formyltransferase from Methanobacterium thermoautotrophicum !1deltaH. Nucleotide sequence and functional expression of the !1cloned gene. !$#cross-references MUID:90094441; PMID:2403564 !$#accession B34912 !'##molecule_type DNA !'##residues 1-50 ##label DIM !'##cross-references GB:J05173; NID:g1196490; PIDN:AAA88221.1; !1PID:g1196491 !'##experimental_source strain Delta H COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. SUMMARY #length 50 #checksum 6970 SEQUENCE /// ENTRY I84547 #type complete TITLE hypothetical mdl fusion protein - Escherichia coli ORGANISM #formal_name Escherichia coli DATE 07-Aug-1998 #sequence_revision 07-Aug-1998 #text_change 19-May-2000 ACCESSIONS I84547 REFERENCE I41113 !$#authors Allikmets, R.; Gerrard, B.; Court, D.; Dean, M. !$#journal Gene (1993) 136:231-236 !$#title Cloning and organization of the abc and mdl genes of !1Escherichia coli: relationship to eukaryotic multidrug !1resistance. !$#cross-references MUID:94124004; PMID:7904973 !$#accession I84547 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-1143 ##label RES !'##cross-references GB:L08627; NID:g146800; PIDN:AAC36870.1; !1PID:g146801 COMMENT This sequence appears to be a fusion of two other proteins !1mdlA (PIR:H64774) and mdlB (PIR:A64775). A comparison of the !1DNA sequence encoding these three sequences shows that a !1single nucleotide insertion and deletion accounts for the !1different translations. KEYWORDS fusion protein; P-loop FEATURE !$340-347 #region nucleotide-binding motif A (P-loop)\ !$1-516 #region mdlA encoded\ !$933-940 #region nucleotide-binding motif A (P-loop)\ !$560-967 #region mdlB encoded SUMMARY #length 1143 #molecular-weight 126082 #checksum 9285 SEQUENCE /// ENTRY TVMSMY #type complete TITLE transforming protein myb, retrovirus-induced fusion forms - mouse ORGANISM #formal_name Mus musculus #common_name house mouse DATE 31-Mar-1989 #sequence_revision 10-Jul-1997 #text_change 19-May-2000 ACCESSIONS A28013; A93084; A23645; A24839 REFERENCE A28013 !$#authors Rosson, D.; Dugan, D.; Reddy, E.P. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1987) 84:3171-3175 !$#title Aberrant splicing events that are induced by proviral !1integration: implications for myb oncogene activation. !$#cross-references MUID:87204099; PMID:3033638 !$#accession A28013 !'##molecule_type mRNA !'##residues 1-715 ##label ROS !'##cross-references GB:M16449; NID:g199928; PIDN:AAA39781.1; !1PID:g199929 REFERENCE A93084 !$#authors Shen-Ong, G.L.C.; Morse III, H.C.; Potter, M.; Mushinski, F. !$#journal Mol. Cell. Biol. (1986) 6:380-392 !$#title Two modes of c-myb activation in virus-induced mouse myeloid !1tumors. !$#cross-references MUID:87064321; PMID:3023843 !$#accession A93084 !'##molecule_type mRNA !'##residues 2-20,'QT',23-359,481-489,'S',491-603,'E',605-715 ##label !1SHE !'##cross-references GB:M13138; NID:g199936; PIDN:AAA39785.1; !1PID:g199938 GENETICS !$#gene myb !$#note exon 9A is normally expressed in some tissues KEYWORDS alternative splicing; DNA binding; duplication; fusion !1protein; nucleus; leucine zipper; proto-oncogene; !1transcription regulation; transforming protein FEATURE !$1-29 #region derived from retroviral long terminal repeat\ !$360-480 #region encoded by exon 9A of the myb gene SUMMARY #length 715 #molecular-weight 79177 #checksum 2019 SEQUENCE /// ENTRY S29876 #type complete TITLE probable H+-transporting ATP synthase pseudogene - soybean ORGANISM #formal_name Glycine max #common_name soybean DATE 12-Mar-1999 #sequence_revision 12-Mar-1999 #text_change 19-May-2000 ACCESSIONS S29876 REFERENCE S29873 !$#authors Chanut, F.A. !$#submission submitted to the EMBL Data Library, July 1992 !$#accession S29876 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-327 ##label CHA !'##cross-references EMBL:Z14032; GB:S55383; GB:S55390; GB:S55391; !1GB:S55457; NID:g22741; PIDN:CAA78408.1; PID:g22742 KEYWORDS pseudogene SUMMARY #length 327 #molecular-weight 34806 #checksum 9644 SEQUENCE /// ENTRY S07937 #type fragment TITLE hypothetical protein atpH 5'-region - Euglena gracilis chloroplast (fragment) ORGANISM #formal_name chloroplast Euglena gracilis DATE 06-Nov-1998 #sequence_revision 06-Nov-1998 #text_change 19-May-2000 ACCESSIONS S07937 REFERENCE S07400 !$#authors Passavant, C.W.; Hallick, R.B. !$#journal Plant Mol. Biol. (1985) 4:347-354 !$#title Location, nucleotide sequence and expression of the !1proton-translocating subunit gene of the E. gracilis !1chloroplast ATP synthase. !$#accession S07937 !'##molecule_type DNA !'##residues 1-38 ##label PAS !'##cross-references EMBL:M16844; NID:g336867; PIDN:AAA84219.1; !1PID:g896263 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. GENETICS !$#genome chloroplast KEYWORDS chloroplast SUMMARY #length 38 #checksum 5551 SEQUENCE /// ENTRY B49316 #type complete TITLE hypothetical protein aroC 3'-region - Synechocystis sp. (strain PCC 6803) ORGANISM #formal_name Synechocystis sp. #variety strain PCC 6803 DATE 15-Oct-1998 #sequence_revision 15-Oct-1998 #text_change 19-May-2000 ACCESSIONS B49316 REFERENCE A49316 !$#authors Schmidt, J.; Bubunenko, M.; Subramanian, A.R. !$#journal J. Biol. Chem. (1993) 268:27447-27457 !$#title A novel operon organization involving the genes for !1chorismate synthase (aromatic biosynthesis pathway) and !1ribosomal GTPase center proteins (L11, L1, L10, L12: !1rplKAJL) in cyanobacterium Synechocystis PCC 6803. !$#cross-references MUID:94086566; PMID:7505271 !$#accession B49316 !'##molecule_type DNA !'##residues 1-81 ##label SCH !'##cross-references GB:X67516; NID:g452796; PIDN:CAA47856.1; !1PID:g452799 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. SUMMARY #length 81 #molecular-weight 8997 #checksum 626 SEQUENCE /// ENTRY B36445 #type complete TITLE hypothetical 11K protein, ATP10 5'-region - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 07-Aug-1998 #sequence_revision 07-Aug-1998 #text_change 19-May-2000 ACCESSIONS B36445 REFERENCE A36445 !$#authors Ackerman, S.H.; Tzagoloff, A. !$#journal J. Biol. Chem. (1990) 265:9952-9959 !$#title ATP10, a yeast nuclear gene required for the assembly of the !1mitochondrial F-1-F-0 complex. !$#cross-references MUID:90277691; PMID:2141026 !$#accession B36445 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-98 ##label ACK !'##cross-references GB:J05463; NID:g1431794; PIDN:AAB05632.1; !1PID:g171103 COMMENT This is the hypothetical translation of a sequence that is !1believed not to be transcribed or translated. SUMMARY #length 98 #molecular-weight 11370 #checksum 8870 SEQUENCE /// ENTRY A58437 #type complete TITLE hypothetical cysteine-rich protein IVc, processed pseudogene - crab-eating macaque ALTERNATE_NAMES disintegrin-like testicular metalloproteinase IVc ORGANISM #formal_name Macaca fascicularis #common_name crab-eating macaque DATE 13-Dec-1996 #sequence_revision 31-Dec-1996 #text_change 19-May-2000 ACCESSIONS A58437; S59854; I65254 REFERENCE I52361 !$#authors Perry, A.C.F.; Jones, R.; Hall, L. !$#journal Biochem. J. (1995) 312:239-244 !$#title Analysis of transcripts encoding novel members of the !1mammalian metalloprotease-like, disintegrin-like, !1cysteine-rich (MDC) protein family and their expression in !1reproductive and non-reproductive monkey tissues. !$#cross-references MUID:96077150; PMID:7492319 !$#accession A58437 !'##status translated from GB/EMBL/DDBJ; conceptual translation of !1pseudogene !'##molecule_type mRNA !'##residues 1-328 ##label PER !'##cross-references EMBL:X87207; NID:g1061162; PIDN:CAA60665.1; !1PID:g1061163 !'##experimental_source adult testis cDNA library !'##note submitted to the EMBL Data Library, May 1995 GENETICS !$#gene tMDC IVc KEYWORDS pseudogene SUMMARY #length 328 #molecular-weight 38070 #checksum 5632 SEQUENCE /// ENTRY C48656 #type fragment TITLE hypothetical metal-regulated protein mrgC - Bacillus subtilis (fragment) ORGANISM #formal_name Bacillus subtilis DATE 03-May-1994 #sequence_revision 09-Jul-1998 #text_change 19-May-2000 ACCESSIONS C48656; S35939 REFERENCE A48656 !$#authors Chen, L.; James, L.P.; Helmann, J.D. !$#journal J. Bacteriol. (1993) 175:5428-5437 !$#title Metalloregulation in Bacillus subtilis: isolation and !1characterization of two genes differentially repressed by !1metal ions. !$#cross-references MUID:93374837; PMID:8396117 !$#accession C48656 !'##molecule_type DNA !'##residues 1-26 ##label CHE !'##cross-references GB:L19548; NID:g397675; PIDN:AAA22610.1; !1PID:g551717 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. GENETICS !$#gene mrgC KEYWORDS pseudogene SUMMARY #length 26 #checksum 7004 SEQUENCE /// ENTRY I39971 #type complete TITLE hypothetical orfx protein - Bacillus subtilis ORGANISM #formal_name Bacillus subtilis DATE 19-Jul-1996 #sequence_revision 09-Jul-1998 #text_change 19-May-2000 ACCESSIONS I39971 REFERENCE I39971 !$#authors Melin, L.; Magnusson, K.; Rutberg, L. !$#journal J. Bacteriol. (1987) 169:3232-3236 !$#title Identification of the promoter of the Bacillus subtilis sdh !1operon. !$#cross-references MUID:87250294; PMID:3036777 !$#accession I39971 !'##status translated from GB/EMBL/DDBJ; conceptual translation of !1pseudogene !'##molecule_type DNA !'##residues 1-32 ##label MEL !'##cross-references GB:M16753; NID:g143528; PIDN:AAA22748.1; !1PID:g143529 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. KEYWORDS pseudogene SUMMARY #length 32 #molecular-weight 3551 #checksum 9610 SEQUENCE /// ENTRY A43860 #type complete TITLE cytolysin II operon secretion protein clyIIB truncation mutant - Actinobacillus pleuropneumoniae (serotypes 2, 3, 5, and 8) ORGANISM #formal_name Actinobacillus pleuropneumoniae DATE 31-Dec-1993 #sequence_revision 30-Apr-1998 #text_change 19-May-2000 ACCESSIONS A43860; C33389; S18117 REFERENCE A43860 !$#authors Jansen, R.; Briaire, J.; Kamp, E.M.; Smits, M.A. !$#journal Infect. Immun. (1992) 60:630-636 !$#title Comparison of the cytolysin II genetic determinants of !1Actinobacillus pleuropneumoniae serotypes. !$#cross-references MUID:92112331; PMID:1339412 !$#accession A43860 !'##molecule_type DNA !'##residues 1-190 ##label JAN !'##cross-references EMBL:X62906; GB:S77543; NID:g49026; !1PIDN:CAA44692.1; PID:g49027 !'##experimental_source serotypes 2, 3, 5, and 8 !'##note sequence extracted from NCBI backbone (NCBIP:77544) REFERENCE A33389 !$#authors Chang, Y.F.; Young, R.; Struck, D.K. !$#journal DNA (1989) 8:635-647 !$#title Cloning and characterization of a hemolysin gene from !1Actinobacillus (Haemophilus) pleuropneumoniae. !$#cross-references MUID:90126233; PMID:2693022 !$#accession C33389 !'##molecule_type DNA !'##residues 1-36 ##label CHA !'##cross-references GB:M30602; NID:g141823; PIDN:AAA87233.1; !1PID:g1088253 COMMENT This clyIIB-like protein is homologous to other cytolysin !1secretion proteins though 167 residues and terminates after !1190 residues. The sequence represents a truncated, defective !1cytolysin transport protein. It is likely that the clyI !1operon B protein complements for clyIIB in many strains. GENETICS !$#gene clyIIB KEYWORDS pseudogene SUMMARY #length 190 #molecular-weight 22105 #checksum 9844 SEQUENCE /// ENTRY I55615 #type complete TITLE hypothetical ORF near Nos2 locus - rat ORGANISM #formal_name Rattus norvegicus #common_name Norway rat DATE 26-Jul-1996 #sequence_revision 08-Apr-1998 #text_change 19-May-2000 ACCESSIONS I55615 REFERENCE I55615 !$#authors Deng, A.Y.; Rapp, J.P. !$#journal J. Clin. Invest. (1995) 95:2170-2177 !$#title Locus for the inducible, but not a constitutive, nitric !1oxide synthase cosegregates with blood pressure in the Dahl !1salt-sensitive rat. !$#cross-references MUID:95256440; PMID:7537756 !$#accession I55615 !'##status nucleic acid sequence not shown; translation not shown; !1translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-50 ##label DEN !'##cross-references EMBL:U16359; NID:g854726; PIDN:AAC52199.1; !1PID:g854727 COMMENT This is the hypothetical translation of a sequence believed !1to contain cloning artifacts. KEYWORDS cloning artifact SUMMARY #length 50 #molecular-weight 5618 #checksum 6597 SEQUENCE /// ENTRY I83417 #type complete TITLE beta-galactosidase (EC 3.2.1.23) lacZ - synthetic ORGANISM #formal_name synthetic DATE 15-Aug-1996 #sequence_revision 21-Aug-1997 #text_change 19-May-2000 ACCESSIONS I83417; I83423 REFERENCE I60307 !$#authors Hashimoto-Gotoh, T.; Mizuno, T.; Ogasahara, Y.; Nakagawa, M. !$#journal Gene (1995) 152:271-275 !$#title An oligodeoxyribonucleotide-directed dual amber method for !1site-directed mutagenesis. !$#cross-references MUID:95137402; PMID:7835714 !$#accession I83417 !'##status nucleic acid sequence not shown; translation not shown; !1translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-80 ##label HAS1 !'##cross-references GB:D29829; NID:g992925; PIDN:BAA06206.1; !1PID:g992926 !'##experimental_source cloning vector pKF17c engineered and expressed !1in Escherichia coli !$#accession I83423 !'##status nucleic acid sequence not shown; translation not shown; !1translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-80 ##label HAS2 !'##cross-references GB:D29825; NID:g992935; PIDN:BAA06198.1; !1PID:g992936 !'##experimental_source cloning vector pKF397 engineered and expressed !1in Escherichia coli KEYWORDS glycosidase; hydrolase SUMMARY #length 80 #molecular-weight 9001 #checksum 8504 SEQUENCE /// ENTRY I83419 #type complete TITLE beta-galactosidase (EC 3.2.1.23) lacZ - synthetic ORGANISM #formal_name synthetic DATE 15-Aug-1996 #sequence_revision 21-Aug-1997 #text_change 19-May-2000 ACCESSIONS I83419; I83425 REFERENCE I60307 !$#authors Hashimoto-Gotoh, T.; Mizuno, T.; Ogasahara, Y.; Nakagawa, M. !$#journal Gene (1995) 152:271-275 !$#title An oligodeoxyribonucleotide-directed dual amber method for !1site-directed mutagenesis. !$#cross-references MUID:95137402; PMID:7835714 !$#accession I83419 !'##status nucleic acid sequence not shown; translation not shown; !1translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-76 ##label HAS1 !'##cross-references GB:D29830; NID:g992928; PIDN:BAA06208.1; !1PID:g992929 !'##experimental_source cloning vector pKF18c engineered and expressed !1in Escherichia coli !$#accession I83425 !'##status nucleic acid sequence not shown; translation not shown; !1translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-76 ##label HAS2 !'##cross-references GB:D29826; NID:g992938; PIDN:BAA06200.1; !1PID:g992939 !'##experimental_source cloning vector pKF398 engineered and expressed !1in Escherichia coli KEYWORDS glycosidase; hydrolase SUMMARY #length 76 #molecular-weight 8482 #checksum 2242 SEQUENCE /// ENTRY I83421 #type complete TITLE beta-galactosidase (EC 3.2.1.23) lacZ - synthetic ORGANISM #formal_name synthetic DATE 15-Aug-1996 #sequence_revision 21-Aug-1997 #text_change 19-May-2000 ACCESSIONS I83421; I83427 REFERENCE I60307 !$#authors Hashimoto-Gotoh, T.; Mizuno, T.; Ogasahara, Y.; Nakagawa, M. !$#journal Gene (1995) 152:271-275 !$#title An oligodeoxyribonucleotide-directed dual amber method for !1site-directed mutagenesis. !$#cross-references MUID:95137402; PMID:7835714 !$#accession I83421 !'##status nucleic acid sequence not shown; translation not shown; !1translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-76 ##label HAS1 !'##cross-references GB:D29831; NID:g992931; PIDN:BAA06210.1; !1PID:g992932 !'##experimental_source cloning vector pKF19c engineered and expressed !1in Escherichia coli !$#accession I83427 !'##status nucleic acid sequence not shown; translation not shown; !1translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-76 ##label HAS2 !'##cross-references GB:D29827; NID:g992941; PIDN:BAA06202.1; !1PID:g992942 !'##experimental_source cloning vector pKF399 engineered and expressed !1in Escherichia coli KEYWORDS glycosidase; hydrolase SUMMARY #length 76 #molecular-weight 8581 #checksum 2905 SEQUENCE /// ENTRY I83424 #type complete TITLE chloramphenicol O-acetyltransferase (EC 2.3.1.28) - synthetic ORGANISM #formal_name synthetic DATE 15-Aug-1996 #sequence_revision 21-Aug-1997 #text_change 19-May-2000 ACCESSIONS I83424; I83426; I83428 REFERENCE I60307 !$#authors Hashimoto-Gotoh, T.; Mizuno, T.; Ogasahara, Y.; Nakagawa, M. !$#journal Gene (1995) 152:271-275 !$#title An oligodeoxyribonucleotide-directed dual amber method for !1site-directed mutagenesis. !$#cross-references MUID:95137402; PMID:7835714 !$#accession I83424 !'##status nucleic acid sequence not shown; translation not shown; !1translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-219 ##label HAS1 !'##cross-references GB:D29825; NID:g992935; PIDN:BAA06199.1; !1PID:g992937 !'##experimental_source cloning vector pKF397 engineered and expressed !1in Escherichia coli !$#accession I83426 !'##status nucleic acid sequence not shown; translation not shown; !1translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-219 ##label HAS2 !'##cross-references GB:D29826; NID:g992938; PIDN:BAA06201.1; !1PID:g992940 !'##experimental_source cloning vector pKF398H engineered and expressed !1in Escherichia coli !$#accession I83428 !'##status nucleic acid sequence not shown; translation not shown; !1translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-219 ##label HAS3 !'##cross-references GB:D29827; NID:g992941; PIDN:BAA06203.1; !1PID:g992943 KEYWORDS acyltransferase SUMMARY #length 219 #molecular-weight 25663 #checksum 7746 SEQUENCE /// ENTRY I53672 #type complete TITLE somatotropin - synthetic ORGANISM #formal_name synthetic DATE 07-Jun-1996 #sequence_revision 31-Jul-1997 #text_change 19-May-2000 ACCESSIONS I53672 REFERENCE I53672 !$#authors Bogosian, G.; Bilyeu, K.; O'Neil, J.P. !$#journal Gene (1993) 133:17-22 !$#title Genome rearrangements by residual IS10 elements in strains !1of Escherichia coli K-12 which had undergone Tn10 !1mutagenesis and fusaric acid selection. !$#cross-references MUID:94040791; PMID:8224890 !$#accession I53672 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-20 ##label BOG !'##cross-references GB:S67119; NID:g455674; PIDN:AAB28847.1; !1PID:g455675 !'##note partial sequence of bovine somatotropin synthesized and !1expressed in Escherichia coli fusion protein SUMMARY #length 20 #molecular-weight 2162 #checksum 5718 SEQUENCE /// ENTRY A40201 #type complete TITLE artifact-warning sequence (translated ALU class A) - human ORGANISM #formal_name Homo sapiens #common_name man DATE 31-Mar-1992 #sequence_revision 11-Aug-1995 #text_change 19-May-2000 ACCESSIONS A40201 REFERENCE A40201 !$#authors Claverie, J.M. !$#citation personal communication, 1992 !$#accession A40201 !'##molecule_type DNA !'##residues 1-627 ##label CLA REFERENCE A40200 !$#authors Claverie, J.M. !$#journal Genomics (1992) 12:838-841 !$#title Identifying coding exons by similarity search: Alu-derived !1and other potentially misleading protein sequences. !$#cross-references MUID:92241891; PMID:1572661 !$#contents annotation COMMENT This "warning" entry is a conceptual translation in all 6 !1reading frames of one arbitrarily chosen member of the A !1class of the Alu repeat sequence. Translations are separated !1by 'XXX' and in-frame stop codons are shown as 'X'. COMMENT Any significant similarity of a predicted protein sequence !1to a portion of this entry is a warning that an Alu repeat !1may have been included artifactually in the coding !1nucleotide sequence. SUMMARY #length 627 #molecular-weight 69212 #checksum 5743 SEQUENCE /// ENTRY B40201 #type complete TITLE artifact-warning sequence (translated ALU class B) - human ORGANISM #formal_name Homo sapiens #common_name man DATE 31-Mar-1992 #sequence_revision 11-Aug-1995 #text_change 19-May-2000 ACCESSIONS B40201 REFERENCE A40201 !$#authors Claverie, J.M. !$#citation personal communication, 1992 !$#accession B40201 !'##molecule_type DNA !'##residues 1-301 ##label CLA REFERENCE A40200 !$#authors Claverie, J.M. !$#journal Genomics (1992) 12:838-841 !$#title Identifying coding exons by similarity search: Alu-derived !1and other potentially misleading protein sequences. !$#cross-references MUID:92241891; PMID:1572661 !$#contents annotation COMMENT This "warning" entry is a conceptual translation in all 6 !1reading frames of one arbitrarily chosen member of the A !1class of the Alu repeat sequence. Translations are separated !1by 'XXX' and in-frame stop codons are shown as 'X'. COMMENT Any significant similarity of a predicted protein sequence !1to a portion of this entry is a warning that an Alu repeat !1may have been included artifactually in the coding !1nucleotide sequence. SUMMARY #length 301 #molecular-weight 33045 #checksum 3307 SEQUENCE /// ENTRY C40201 #type complete TITLE artifact-warning sequence (translated ALU class C) - human ORGANISM #formal_name Homo sapiens #common_name man DATE 31-Mar-1992 #sequence_revision 11-Aug-1995 #text_change 19-May-2000 ACCESSIONS C40201 REFERENCE A40201 !$#authors Claverie, J.M. !$#citation personal communication, 1992 !$#accession C40201 !'##molecule_type DNA !'##residues 1-613 ##label CLA REFERENCE A40200 !$#authors Claverie, J.M. !$#journal Genomics (1992) 12:838-841 !$#title Identifying coding exons by similarity search: Alu-derived !1and other potentially misleading protein sequences. !$#cross-references MUID:92241891; PMID:1572661 !$#contents annotation COMMENT This "warning" entry is a conceptual translation in all 6 !1reading frames of one arbitrarily chosen member of the A !1class of the Alu repeat sequence. Translations are separated !1by 'XXX' and in-frame stop codons are shown as 'X'. COMMENT Any significant similarity of a predicted protein sequence !1to a portion of this entry is a warning that an Alu repeat !1may have been included artifactually in the coding !1nucleotide sequence. SUMMARY #length 613 #molecular-weight 68177 #checksum 1793 SEQUENCE /// ENTRY D40201 #type complete TITLE artifact-warning sequence (translated ALU class D) - human ORGANISM #formal_name Homo sapiens #common_name man DATE 31-Mar-1992 #sequence_revision 11-Aug-1995 #text_change 19-May-2000 ACCESSIONS D40201 REFERENCE A40201 !$#authors Claverie, J.M. !$#citation personal communication, 1992 !$#accession D40201 !'##molecule_type DNA !'##residues 1-579 ##label CLA REFERENCE A40200 !$#authors Claverie, J.M. !$#journal Genomics (1992) 12:838-841 !$#title Identifying coding exons by similarity search: Alu-derived !1and other potentially misleading protein sequences. !$#cross-references MUID:92241891; PMID:1572661 !$#contents annotation COMMENT This "warning" entry is a conceptual translation in all 6 !1reading frames of one arbitrarily chosen member of the A !1class of the Alu repeat sequence. Translations are separated !1by 'XXX' and in-frame stop codons are shown as 'X'. COMMENT Any significant similarity of a predicted protein sequence !1to a portion of this entry is a warning that an Alu repeat !1may have been included artifactually in the coding !1nucleotide sequence. SUMMARY #length 579 #molecular-weight 63492 #checksum 1497 SEQUENCE /// ENTRY E40201 #type complete TITLE artifact-warning sequence (translated ALU class E) - human ORGANISM #formal_name Homo sapiens #common_name man DATE 31-Mar-1992 #sequence_revision 11-Aug-1995 #text_change 19-May-2000 ACCESSIONS E40201 REFERENCE A40201 !$#authors Claverie, J.M. !$#citation personal communication, 1992 !$#accession E40201 !'##molecule_type DNA !'##residues 1-597 ##label CLA REFERENCE A40200 !$#authors Claverie, J.M. !$#journal Genomics (1992) 12:838-841 !$#title Identifying coding exons by similarity search: Alu-derived !1and other potentially misleading protein sequences. !$#cross-references MUID:92241891; PMID:1572661 !$#contents annotation COMMENT This "warning" entry is a conceptual translation in all 6 !1reading frames of one arbitrarily chosen member of the A !1class of the Alu repeat sequence. Translations are separated !1by 'XXX' and in-frame stop codons are shown as 'X'. COMMENT Any significant similarity of a predicted protein sequence !1to a portion of this entry is a warning that an Alu repeat !1may have been included artifactually in the coding !1nucleotide sequence. SUMMARY #length 597 #molecular-weight 66130 #checksum 8031 SEQUENCE /// ENTRY F40201 #type complete TITLE artifact-warning sequence (translated ALU class F) - human ORGANISM #formal_name Homo sapiens #common_name man DATE 31-Mar-1992 #sequence_revision 11-Aug-1995 #text_change 19-May-2000 ACCESSIONS F40201 REFERENCE A40201 !$#authors Claverie, J.M. !$#citation personal communication, 1992 !$#accession F40201 !'##molecule_type DNA !'##residues 1-673 ##label CLA REFERENCE A40200 !$#authors Claverie, J.M. !$#journal Genomics (1992) 12:838-841 !$#title Identifying coding exons by similarity search: Alu-derived !1and other potentially misleading protein sequences. !$#cross-references MUID:92241891; PMID:1572661 !$#contents annotation COMMENT This "warning" entry is a conceptual translation in all 6 !1reading frames of one arbitrarily chosen member of the A !1class of the Alu repeat sequence. Translations are separated !1by 'XXX' and in-frame stop codons are shown as 'X'. COMMENT Any significant similarity of a predicted protein sequence !1to a portion of this entry is a warning that an Alu repeat !1may have been included artifactually in the coding !1nucleotide sequence. SUMMARY #length 673 #molecular-weight 74664 #checksum 1506 SEQUENCE /// ENTRY I56393 #type fragment TITLE lacZ/IS1 mutant fusion protein - Escherichia coli (fragment) ORGANISM #formal_name Escherichia coli DATE 15-Aug-1996 #sequence_revision 16-Aug-1996 #text_change 19-May-2000 ACCESSIONS I56393 REFERENCE I56393 !$#authors Malamy, M.H.; Rahaim, P.T.; Hoffman, C.S.; Baghdoyan, D.; !1O'Connor, M.B.; Miller, J.F. !$#journal J. Mol. Biol. (1985) 181:551-555 !$#title A frameshift mutation at the junction of an IS1 insertion !1within lacZ restores beta-galactosidase activity via !1formation of an active lacZ-IS1 fusion protein. !$#cross-references MUID:85210885; PMID:2987506 !$#accession I56393 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-18 ##label MAL !'##cross-references GB:K03504; NID:g146583; PIDN:AAA24058.1; !1PID:g146584 KEYWORDS fusion protein SUMMARY #length 18 #checksum 3832 SEQUENCE /// ENTRY I67761 #type complete TITLE EST/beta-Gal mutant fusion protein - Escherichia coli ORGANISM #formal_name Escherichia coli DATE 15-Aug-1996 #sequence_revision 16-Aug-1996 #text_change 19-May-2000 ACCESSIONS I67761 REFERENCE I53672 !$#authors Bogosian, G.; Bilyeu, K.; O'Neil, J.P. !$#journal Gene (1993) 133:17-22 !$#title Genome rearrangements by residual IS10 elements in strains !1of Escherichia coli K-12 which had undergone Tn10 !1mutagenesis and fusaric acid selection. !$#cross-references MUID:94040791; PMID:8224890 !$#accession I67761 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-87 ##label BOG !'##cross-references GB:S67119; NID:g455674; PIDN:AAB28849.1; !1PID:g455677 KEYWORDS fusion protein SUMMARY #length 87 #molecular-weight 10018 #checksum 1901 SEQUENCE /// ENTRY I46172 #type fragment TITLE hypothetical hemoglobin psi-beta-Z pseudogene - goat (fragment) ORGANISM #formal_name Capra aegagrus hircus #common_name domestic goat DATE 21-Feb-1997 #sequence_revision 27-Feb-1997 #text_change 19-May-2000 ACCESSIONS I46172 REFERENCE I46172 !$#authors Cleary, M.L.; Schon, E.A.; Lingrel, J.B. !$#journal Cell (1981) 26:181-190 !$#title Two related pseudogenes are the result of a gene duplication !1in the goat beta-globin locus. !$#cross-references MUID:82137052; PMID:7332927 !$#accession I46172 !'##status translated from GB/EMBL/DDBJ; conceptual translation of !1pseudogene !'##molecule_type DNA !'##residues 1-110 ##label CLE !'##cross-references EMBL:V00154; NID:g965; PIDN:CAA23469.1; PID:g966 GENETICS !$#introns 11/3; 18/3; 29/2; 103/3 KEYWORDS pseudogene SUMMARY #length 110 #checksum 5646 SEQUENCE /// ENTRY S20754 #type complete TITLE probable pre-core protein pseudogene - hepatitis B virus ORGANISM #formal_name hepatitis B virus, HBV DATE 20-Feb-1995 #sequence_revision 17-Mar-1997 #text_change 19-May-2000 ACCESSIONS S20754; S53136; S53142 REFERENCE S20745 !$#authors Lai, M.E.; Mazzoleni, A.P.; Balestrieri, A.; Melis, A.; !1Porru, A. !$#submission submitted to the EMBL Data Library, March 1992 !$#description Sequence analysis of HBV genomes isolated from patients with !1HBsAg negative chronic liver disease. !$#accession S20754 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-27 ##label LAI !'##cross-references EMBL:X65259; NID:g59439; PIDN:CAA46358.1; !1PID:g59441 !'##experimental_source ayw, patient E REFERENCE S53112 !$#authors Lai, M.E.; Mazzoleni, A.P.; Porru, A.; Balestrieri, A. !$#submission submitted to the EMBL Data Library, March 1995 !$#accession S53136 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-27 ##label LA2 !'##cross-references EMBL:X85264; NID:g736013; PIDN:CAA59540.1; !1PID:g736015 !'##experimental_source patient Buesca'92 !$#accession S53142 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-27 ##label LA3 !'##cross-references EMBL:X85266; NID:g736021; PIDN:CAA59546.1; !1PID:g736023 !'##experimental_source patient Macis'89 KEYWORDS pseudogene SUMMARY #length 27 #molecular-weight 3009 #checksum 8821 SEQUENCE /// ENTRY A40473 #type complete TITLE RNA-directed RNA polymerase (EC 2.7.7.48) / coat protein mutant fusion protein - clover yellow mosaic virus CONTAINS coat protein; RNA-directed RNA polymerase (EC 2.7.7.48) ORGANISM #formal_name clover yellow mosaic virus DATE 29-Jan-1993 #sequence_revision 24-Apr-1997 #text_change 19-May-2000 ACCESSIONS A40473 REFERENCE A40473 !$#authors White, K.A.; Bancroft, J.B.; Mackie, G.A. !$#journal Virology (1991) 183:479-486 !$#title Defective RNAs of clover yellow mosaic virus encode !1nonstructural/coat protein fusion products. !$#cross-references MUID:91306431; PMID:1830181 !$#accession A40473 !'##molecule_type genomic RNA !'##residues 1-312 ##label WHI !'##cross-references GB:M63511; NID:g323436; PIDN:AAA42935.1; !1PID:g323437 !'##note fragments of three other mutant fusion proteins are presented KEYWORDS coat protein; fusion protein; nucleotidyltransferase FEATURE !$1-221 #region RNA-directed RNA polymerase\ !$222-312 #region coat protein SUMMARY #length 312 #molecular-weight 34657 #checksum 2701 SEQUENCE /// ENTRY T41193 #type complete TITLE probable capsid protein pseudogene SPCC1884.01 - fission yeast (Schizosaccharomyces pombe) ORGANISM #formal_name Schizosaccharomyces pombe DATE 20-Apr-2000 #sequence_revision 20-Apr-2000 #text_change 20-Apr-2000 ACCESSIONS T41193 REFERENCE Z21977 !$#authors Bothe, G.; Pohl, T.; Wood, V.; Rajandream, M.A.; Barrell, !1B.G. !$#submission submitted to the EMBL Data Library, September 1998 !$#accession T41193 !'##status translated from GB/EMBL/DDBJ; conceptual translation of !1pseudogene !'##molecule_type DNA !'##residues 1-478 ##label BOT !'##cross-references EMBL:AL031787; PIDN:CAA21157.1; GSPDB:GN00068; !1SPDB:SPCC1884.01 !'##experimental_source strain 972h-; cosmid c1884 GENETICS !$#gene SPDB:SPCC1884.01 !$#map_position 3 !$#introns 5/2; 190/3; 281/1 KEYWORDS pseudogene SUMMARY #length 478 #molecular-weight 55329 #checksum 1125 SEQUENCE /// ENTRY A38921 #type complete TITLE transcribed pseudogene XA - human ORGANISM #formal_name Homo sapiens #common_name man DATE 18-Jul-1995 #sequence_revision 11-Aug-1995 #text_change 05-May-2000 ACCESSIONS A38921; A44346 REFERENCE A38921 !$#authors Gitelman, S.E.; Bristow, J.; Miller, W.L. !$#journal Mol. Cell. Biol. (1992) 12:2124-2134 !$#title Mechanism and consequences of the duplication of the human !1C4/P450c21/gene X locus. !$#accession A38921 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-311 ##label GIT1 !'##cross-references GB:S38953; NID:g250698 !'##note this publication is not cited in GenBank entry S38953, release !1113.0 REFERENCE A44346 !$#authors Gitelman, S.E.; Bristow, J.; Miller, W.L. !$#journal Mol. Cell. Biol. (1992) 12:3313-3314 !$#cross-references MUID:92318949; PMID:1620134 !$#contents erratum; corrects misprinted sequence figure !$#accession A44346 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-311 ##label GIT2 !'##cross-references GB:S38953; NID:g250698; PIDN:AAB22399.2; !1PID:g5705949 !'##note sequence extracted from NCBI backbone (NCBIN:107685, !1NCBIP:107686) COMMENT This gene is transcribed in the adrenal gland but is not !1translated. GENETICS !$#gene XA !$#map_position 6p21.3 !$#start_codon CTG !$#introns 131/1; 243/1; 284/1; 301/3 KEYWORDS pseudogene SUMMARY #length 311 #molecular-weight 33721 #checksum 4365 SEQUENCE /// ENTRY T41538 #type complete TITLE probable pseudogene SPCC663.07c - fission yeast (Schizosaccharomyces pombe) ORGANISM #formal_name Schizosaccharomyces pombe DATE 20-Apr-2000 #sequence_revision 20-Apr-2000 #text_change 20-Apr-2000 ACCESSIONS T41538 REFERENCE Z17318 !$#authors Seeger, K.; Harris, D.; Wood, V.; Rajandream, M.A.; Barrell, !1B.G. !$#submission submitted to the EMBL Data Library, August 1998 !$#accession T41538 !'##status translated from GB/EMBL/DDBJ; conceptual translation of !1pseudogene !'##molecule_type DNA !'##residues 1-249 ##label SEE !'##cross-references EMBL:AL031307; PIDN:CAA20367.1; GSPDB:GN00068; !1SPDB:SPCC663.07c !'##experimental_source strain 972h-; cosmid c663 GENETICS !$#gene SPDB:SPCC663.07c !$#map_position 3 !$#introns 164/1 KEYWORDS pseudogene SUMMARY #length 249 #molecular-weight 27422 #checksum 6098 SEQUENCE /// ENTRY T41231 #type complete TITLE wtf protein pseudogene SPCC1919.06c - fission yeast (Schizosaccharomyces pombe) ORGANISM #formal_name Schizosaccharomyces pombe DATE 20-Apr-2000 #sequence_revision 20-Apr-2000 #text_change 20-Apr-2000 ACCESSIONS T41231 REFERENCE Z21979 !$#authors Lyne, M.; Harris, D.E.; Murphey, L.D.; Rajandream, M.A.; !1Barrell, B.G. !$#submission submitted to the EMBL Data Library, January 1999 !$#accession T41231 !'##status translated from GB/EMBL/DDBJ; conceptual translation of !1pseudogene !'##molecule_type DNA !'##residues 1-249 ##label LYN !'##cross-references EMBL:AL035075; PIDN:CAA22637.1; GSPDB:GN00068; !1SPDB:SPCC1919.06c !'##experimental_source strain 972h-; cosmid c1919 GENETICS !$#gene SPDB:SPCC1919.06c !$#map_position 3 !$#introns 47/1; 129/1; 207/1; 225/1 KEYWORDS pseudogene SUMMARY #length 249 #molecular-weight 28441 #checksum 5999 SEQUENCE /// ENTRY JC5585 #type complete TITLE hypothetical mutant tetracyclin resistance / 3-isopropylmalate dehydrogenase fusion 30.2K protein - Escherichia coli plasmid ORGANISM #formal_name Escherichia coli DATE 20-Apr-2000 #sequence_revision 20-Apr-2000 #text_change 20-Apr-2000 ACCESSIONS JC5585 REFERENCE JC5585 !$#authors Suzuki, T.; Tanaka, Y.; Ishida, M.; Ishizuka, M.; Yamagishi, !1A.; Oshima, T. !$#journal J. Biochem. (1997) 121:1031-1034 !$#title Screening of a mutant plasmid with high expression !1efficiency of GC-rich leuB gene of an extreme thermophile, !1Thermus thermophilus, in Escherichia coli. !$#cross-references MUID:98014463; PMID:9354372 !$#accession JC5585 !'##molecule_type DNA !'##residues 1-274 ##label SUZ GENETICS !$#genome plasmid SUMMARY #length 274 #molecular-weight 30077 #checksum 2019 SEQUENCE /// ENTRY A37413 #type fragment TITLE hypothetical RTVL-H3 promoter region/calbindin fusion protein - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 16-Apr-1999 #sequence_revision 16-Apr-1999 #text_change 20-Apr-2000 ACCESSIONS A37413 REFERENCE A37413 !$#authors Liu, A.Y.; Abraham, B.A. !$#journal Cancer Res. (1991) 51:4107-4110 !$#title Subtractive cloning of a hybrid human endogenous retrovirus !1and calbindin gene in the prostate cell line PC3. !$#cross-references MUID:91309099; PMID:1713126 !$#accession A37413 !'##molecule_type mRNA !'##residues 1-102 ##label LIU !'##cross-references GB:S46006; NID:g1679976; PIDN:AAB19408.1; !1PID:g233226 !'##experimental_source prostate bone metastasis cell line PC3 !'##note sequence extracted from NCBI backbone (NCBIN:46006, !1NCBIP:46012) KEYWORDS fusion protein FEATURE !$1-50 #region retrovirus-like H3 promotor region derived\ !$51-102 #region human calbindin derived (fragment) SUMMARY #length 102 #checksum 5014 SEQUENCE /// ENTRY A60600 #type fragment TITLE hypothetical mutant NADH dehydrogenase (ubiquinone) chain 5 - rat mitochondrion (fragment) ORGANISM #formal_name mitochondrion Rattus norvegicus #common_name Norway rat DATE 23-Jul-1998 #sequence_revision 23-Jul-1998 #text_change 20-Apr-2000 ACCESSIONS A60600 REFERENCE A60600 !$#authors Corral, M.; Paris, B.; Baffet, G.; Tichonicky, L.; !1Guguen-Guillouzo, C.; Kruh, J.; Defer, N. !$#journal Exp. Cell Res. (1989) 184:158-166 !$#title Increased level of the mitochondrial ND5 transcript in !1chemically induced rat hepatomas. !$#cross-references MUID:90005714; PMID:2507335 !$#accession A60600 !'##status not compared with conceptual translation !'##molecule_type mRNA !'##residues 1-107 ##label COR !'##experimental_source artifical carcinogen induced hepatoma cell line !1Morris 7288 GENETICS !$#gene ND5 !$#genome mitochondrion !$#genetic_code SGC1 KEYWORDS liver; mitochondrion SUMMARY #length 107 #checksum 7101 SEQUENCE /// ENTRY S30392 #type complete TITLE hypothetical RTVL-H3 promoter region/phospholipase A2 homolog PLA2L fusion protein (clone AF-5) - human ORGANISM #formal_name Homo sapiens #common_name man DATE 16-Apr-1999 #sequence_revision 16-Apr-1999 #text_change 20-Apr-2000 ACCESSIONS S30392; S28508 REFERENCE S30392 !$#authors Feuchter-Murthy, A.E.; Freeman, J.D.; Mager, D.L. !$#journal Nucleic Acids Res. (1993) 21:135-143 !$#title Splicing of a human endogenous retrovirus to a novel !1phospholipase A2 related gene. !$#cross-references MUID:93181166; PMID:8382789 !$#accession S30392 !'##molecule_type mRNA !'##residues 1-689 ##label FEU1 !'##cross-references EMBL:Z14310; GB:S55809; NID:g59976 !'##experimental_source human teratocarcinoma cell line NTera2D1 REFERENCE S28508 !$#authors Feuchter-Murthy, A.E.; Freeman, J.D.; Mager, D.L. !$#submission submitted to the EMBL Data Library, August 1992 !$#accession S28508 !'##molecule_type mRNA !'##residues 1-390,'P',392-689 ##label FEU2 !'##cross-references EMBL:Z14310; GB:S55809; NID:g59976; !1PIDN:CAA78662.1; PID:g59977 GENETICS !$#gene GDB:PLA2L !'##cross-references GDB:133794; OMIM:601658 !$#map_position 8q24-8qter KEYWORDS fusion protein FEATURE !$1-49 #region retrovirus-like H3 promotor region derived\ !$50-689 #region human phospholipase A2 homolog PLA2L derived SUMMARY #length 689 #molecular-weight 74014 #checksum 1547 SEQUENCE /// ENTRY A26560 #type fragment TITLE glycophorin B/glycophorin A mutant fusion protein St-a precursor - human (fragment) ALTERNATE_NAMES Stones-active glycophorin ORGANISM #formal_name Homo sapiens #common_name man DATE 09-Sep-1987 #sequence_revision 04-Sep-1997 #text_change 20-Apr-2000 ACCESSIONS A26560; S00089; I65353 REFERENCE A26560 !$#authors Blanchard, D.; Dahr, W.; Cartron, J.P. !$#journal Biol. Chem. Hoppe-Seyler (1985) 366:766-767 !$#accession A26560 !'##molecule_type protein !'##residues 7-105 ##label BLA1 !'##experimental_source donor Pj REFERENCE S00089 !$#authors Blanchard, D.; Dahr, W.; Beyreuther, K.; Moulds, J.; !1Cartron, J.P. !$#journal Eur. J. Biochem. (1987) 167:361-366 !$#title Hybrid glycophorins from human erythrocyte membranes. !1Isolation and complete structural analysis of the novel !1sialoglycoprotein from St(a+) red cells. !$#cross-references MUID:87304269; PMID:3622521 !$#accession S00089 !'##status preliminary !'##molecule_type protein !'##residues 7-105 ##label BLA2 REFERENCE I52561 !$#authors Huang, C. !$#journal Blood (1991) 77:1813-1820 !$#title Identification of recombination events resulting in three !1hybrid genes encoding human MiV, MiV(J.L.) and jra !1glycophorins. !$#cross-references MUID:91198514; PMID:2015404 !$#accession I65353 !'##status translation not shown; translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-45 ##label HUA !'##cross-references GB:M60716; NID:g183601; PIDN:AAC64486.1; !1PID:g553321 GENETICS !$#gene GYPB/GYPA !$#map_position 4q28-4q31/4q28-4q31 !$#introns 33/1 KEYWORDS blood group; erythrocyte; fusion protein; glycoprotein; !1sialoglycoprotein; transmembrane protein FEATURE !$1-6 #domain signal sequence (fragment) #status predicted !8#label SIG\ !$1-32 #region glycophorin B\ !$7-105 #product glycophorin B/glycophorin A mutant fusion !8protein St-a #status experimental #label MAT\ !$33-105 #region glycophorin A SUMMARY #length 105 #checksum 7796 SEQUENCE /// ENTRY A34472 #type fragment TITLE glycophorin A/glycophorin B mutant fusion protein MiV precursor - human (fragment) CONTAINS glycophorin MiV; glycophorin MiVJL ORGANISM #formal_name Homo sapiens #common_name man DATE 15-Jun-1990 #sequence_revision 04-Sep-1997 #text_change 20-Apr-2000 ACCESSIONS A34472; I52561; I65352 REFERENCE A34472 !$#authors Johe, K.K.; Smith, A.J.; Vengelen-Tyler, V.; Blumenfeld, !1O.O. !$#journal J. Biol. Chem. (1989) 264:17486-17493 !$#title Amino acid sequence of an alpha-delta-glycophorin hybrid. A !1structure reciprocal to St(a) delta-alpha-glycophorin !1hybrid. !$#cross-references MUID:90008919; PMID:2793868 !$#accession A34472 !'##molecule_type protein !'##residues 7-66,'M',68-110 ##label JOH REFERENCE I52561 !$#authors Huang, C. !$#journal Blood (1991) 77:1813-1820 !$#title Identification of recombination events resulting in three !1hybrid genes encoding human MiV, MiV(J.L.) and jra !1glycophorins. !$#cross-references MUID:91198514; PMID:2015404 !$#accession I52561 !'##status translation not shown; translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-77 ##label HUA1 !'##cross-references GB:M60712; NID:g183550; PIDN:AAC34311.1; !1PID:g553318 !'##experimental_source glycophorin mutant MiV !$#accession I65352 !'##status translation not shown; translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-66,'M',68-77 ##label HUA2 !'##cross-references GB:M60714; NID:g183556; PIDN:AAC36494.1; !1PID:g553320 !'##experimental_source glycophorin mutant MiVJL !'##note this sequence is from the same individual as A34472 GENETICS !$#gene GYPA/GYPB !$#introns 33/1; 65/1 KEYWORDS blood group; erythrocyte; fusion protein; glycoprotein; !1sialoglycoprotein; transmembrane protein FEATURE !$1-6 #domain signal sequence (fragment) #status predicted !8#label SIG\ !$1-32 #region glycophorin A\ !$7-110 #product glycophorin A/glycophorin B mutant fusion !8protein MiV #status experimental #label MAT\ !$33-105 #region glycophorin B SUMMARY #length 110 #checksum 9515 SEQUENCE /// ENTRY I52606 #type complete TITLE glycophorin A/glycophorin B mutant fusion protein SAT precursor - human ORGANISM #formal_name Homo sapiens #common_name man DATE 02-Jul-1996 #sequence_revision 04-Sep-1997 #text_change 20-Apr-2000 ACCESSIONS I52606 REFERENCE I52606 !$#authors Huang, C.H.; Reid, M.E.; Okubo, Y.; Daniels, G.L.; !1Blumenfeld, O.O. !$#journal Blood (1995) 85:2222-2227 !$#title Glycophorin SAT of the human erythrocyte membrane is !1specified by a hybrid gene reciprocal to glycophorin Dantu !1gene. !$#cross-references MUID:95235049; PMID:7718894 !$#accession I52606 !'##status translated from GB/EMBL/DDBJ !'##molecule_type mRNA !'##residues 1-123 ##label HUA !'##cross-references GB:S77893; NID:g998554; PIDN:AAB34057.1; !1PID:g998555 GENETICS !$#gene GYPA/GYPB; GPSAT !$#introns 13/1; 46/1; 78/1; 91/1; 122/3 KEYWORDS blood group; erythrocyte; fusion protein; glycoprotein; !1sialoglycoprotein; transmembrane protein FEATURE !$1-90 #region glycophorin A\ !$1-19 #domain signal sequence #status predicted #label SIG\ !$20-123 #product glycophorin A/glycophorin B mutant fusion !8protein SAT #status predicted #label MAT\ !$91-123 #region glycophorin B\ !$45 #binding_site carbohydrate (Asn) (covalen) #status !8predicted SUMMARY #length 123 #molecular-weight 13457 #checksum 8459 SEQUENCE /// ENTRY I65317 #type fragment TITLE hemoglobin delta chain - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 12-Jul-1996 #sequence_revision 31-Jul-1997 #text_change 20-Apr-2000 ACCESSIONS I65317 REFERENCE I52502 !$#authors Liu, J.Z.; Harano, T.; Lanclos, K.D.; Huisman, T.H. !$#journal Biochim. Biophys. Acta (1987) 909:208-212 !$#title The beta-delta crossover leading to the beta delta hybrid !1gene of hemoglobin P-Nilotic is located within 54 base-pairs !1of the 5' end of exon 2 or between codons 31 and 50. !$#cross-references MUID:87299720; PMID:3620470 !$#accession I65317 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-61 ##label LIU !'##cross-references GB:M25661; NID:g183863; PIDN:AAA53154.1; !1PID:g183864 !'##note this sequence was not determined in this report GENETICS !$#gene GDB:HBD !'##cross-references GDB:119298 !$#map_position 11p15.5-11p15.5 !$#introns 31/3 SUMMARY #length 61 #checksum 7415 SEQUENCE /// ENTRY I38165 #type fragment TITLE hypothetical RLF/MYCL1 mutant fusion protein - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 21-Feb-1997 #sequence_revision 21-Feb-1997 #text_change 20-Apr-2000 ACCESSIONS I38165 REFERENCE S15340 !$#authors Maekelae, T.P.; Saksela, K.; Evan, G.; Alitalo, K. !$#journal EMBO J. (1991) 10:1331-1335 !$#title A fusion protein formed by L-myc and a novel gene in SCLC. !$#cross-references MUID:91224083; PMID:1851085 !$#accession I38165 !'##status translated from GB/EMBL/DDBJ !'##molecule_type mRNA !'##residues 1-96 ##label MAE !'##cross-references EMBL:X58480; NID:g36069; PIDN:CAA41389.1; !1PID:g36070 COMMENT This sequence is the chimeric product of a translocation !1mutation. For the hypothetical, rlf protein see PIR:S21662. GENETICS !$#gene RLF/MYCL1; L-myc-1 !$#map_position 1p32 KEYWORDS fusion protein SUMMARY #length 96 #checksum 5047 SEQUENCE /// ENTRY I58970 #type fragment TITLE hypothetical protein NAD4 locus - rat mitochondrion (fragment) ORGANISM #formal_name mitochondrion Rattus norvegicus #common_name Norway rat DATE 30-Oct-1998 #sequence_revision 30-Oct-1998 #text_change 20-Apr-2000 ACCESSIONS I58970 REFERENCE I58970 !$#authors Castora, F.J.; Arnheim, N.; Simpson, M.V. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1980) 77:6415-6419 !$#title Mitochondrial DNA polymorphism: evidence that variants !1detected by restriction enzymes differ in nucleotide !1sequence rather than in methylation. !$#cross-references MUID:81101062; PMID:6256736 !$#accession I58970 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-29 ##label CAS !'##cross-references GB:M10477; NID:g343183; PIDN:AAB59710.1; !1PID:g829031 COMMENT The nucleotide sequence is from the NAD4 gene. This !1translation is in a reading frame complementary to gene !1encoded sequence. GENETICS !$#genome mitochondrion !$#genetic_code SGC1 KEYWORDS mitochondrion SUMMARY #length 29 #checksum 3648 SEQUENCE /// ENTRY A45758 #type fragment TITLE hypothetical glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) long splice form - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 10-Sep-1998 #sequence_revision 10-Sep-1998 #text_change 20-Apr-2000 ACCESSIONS A45758; I79513 REFERENCE A45758 !$#authors Hirono, A.; Beutler, E. !$#journal J. Clin. Invest. (1989) 83:343-346 !$#title Alternative splicing of human glucose-6-phosphate !1dehydrogenase messenger RNA in different tissues. !$#cross-references MUID:89093442; PMID:2910917 !$#accession A45758 !'##molecule_type DNA !'##residues 1-46 ##label HIR1 !'##cross-references GB:M23423; NID:g340914; PIDN:AAB59390.1; !1PID:g533203 REFERENCE I59122 !$#authors Hirono, A.; Beutler, E. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1988) 85:3951-3954 !$#title Molecular cloning and nucleotide sequence of cDNA for human !1glucose-6-phosphate dehydrogenase variant A(-). !$#cross-references MUID:88234536; PMID:2836867 !$#accession I79513 !'##status translated from GB/EMBL/DDBJ !'##molecule_type mRNA !'##residues 1-45 ##label HIR2 !'##cross-references GB:M19866; GB:J03231; NID:g182872; PIDN:AAA52501.1; !1PID:g553297 COMMENT This entry shows additional sequence derived from the 3' end !1of intron 7 of glucose-6-phosphate 1-dehydrogenase (see !1PIR:DEHUG6) and found in certain mRNA species from !1lymphoblastoid cell, sperm, and granulocyte libraries. It !1has not been shown that this predicted long splice form of !1the protein is expressed. GENETICS !$#gene GDB:G6PD; G6PD1 !'##cross-references GDB:120621; OMIM:305900 !$#map_position Xq28-Xq28 KEYWORDS alternative splicing SUMMARY #length 46 #checksum 2593 SEQUENCE /// ENTRY S49071 #type fragment TITLE frame shifted G12_orf136 - Mycoplasma pneumoniae (fragment) ALTERNATE_NAMES hypothetical 85K protein (misidentification) ORGANISM #formal_name Mycoplasma pneumoniae #variety ATCC 29342 DATE 28-Aug-1998 #sequence_revision 28-Aug-1998 #text_change 20-Apr-2000 ACCESSIONS S49071 REFERENCE S49059 !$#authors Proft, T.; Herrmann, R. !$#journal Mol. Microbiol. (1994) 13:337-348 !$#title Identification and characterization of hitherto unknown !1Mycoplasma pneumoniae proteins. !$#cross-references MUID:95075318; PMID:7984111 !$#accession S49071 !'##status nucleic acid sequence not shown; translation not shown !'##molecule_type DNA !'##residues 1-42 ##label PRO !'##cross-references EMBL:Z32658; NID:g474092; PIDN:CAA83578.1; !1PID:g474093 !'##experimental_source clone G12-4A !'##note the nucleotide sequence was submitted to the EMBL Data Library, !1April 1994 COMMENT The nucleotide sequence translated in an alternative reading !1frame is identical with G12_orf136 residues 68-102. See !1PIR:S73638. GENETICS !$#genetic_code SGC3 SUMMARY #length 42 #checksum 404 SEQUENCE /// ENTRY I68614 #type fragment TITLE frame shifted FMR1 exon - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 14-Aug-1998 #sequence_revision 14-Aug-1998 #text_change 20-Apr-2000 ACCESSIONS I68614; I68615 REFERENCE I54334 !$#authors Eichler, E.E.; Richards, S.; Gibbs, R.A.; Nelson, D.L. !$#journal Hum. Mol. Genet. (1993) 2:1147-1153 !$#title Fine structure of the human FMR1 gene. !$#cross-references MUID:94004853; PMID:8401496 !$#accession I68614 !'##status preliminary; translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-28 ##label EI1 !'##cross-references GB:L19490; NID:g388747; PIDN:AAA62466.1; !1PID:g388748 !$#accession I68615 !'##status preliminary; translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-28 ##label EI2 !'##cross-references GB:L19491; NID:g388749; PIDN:AAA62467.1; !1PID:g388750 COMMENT This sequence appears to be the frame shifted hypothetical !1translation of an exon for residues 552-574 of the fragile X !1mental retardation syndrome protein. See PIR:A40724. GENETICS !$#gene GDB:FMR1 !'##cross-references GDB:129038; OMIM:309550 !$#map_position Xq27.3-Xq27.3 SUMMARY #length 28 #checksum 1086 SEQUENCE /// ENTRY I76673 #type fragment TITLE hypothetical COII/ND5 mutant fusion protein - mouse mitochondrion (fragment) ALTERNATE_NAMES COII/ND5 protein ORGANISM #formal_name mitochondrion Mus musculus #common_name house mouse DATE 12-Aug-1996 #sequence_revision 16-Jul-1998 #text_change 20-Apr-2000 ACCESSIONS I76673; I76674 REFERENCE I57011 !$#authors Nelson, I.; Gerasimov, S.; Marsac, C.; Lestienne, P.; !1Boursot, P. !$#journal Mamm. Genome (1993) 4:680-683 !$#title Sequence analysis of a deleted mitochondrial DNA molecule in !1heteroplasmic mice. !$#cross-references MUID:94108239; PMID:8281018 !$#accession I76673 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-17 ##label NEL1 !'##cross-references GB:S68119; NID:g544777 !$#accession I76674 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 8-17 ##label NEL2 !'##cross-references GB:S68119; NID:g544777 COMMENT This is the hypothetical translation of a sequence believed !1to result from a deletion mutation. GENETICS !$#gene COII/ND5 !$#genome mitochondrion !$#genetic_code SGC1 KEYWORDS fusion protein; mitochondrion FEATURE !$1-7 #region cytochrome-c oxidase chain II\ !$8-17 #region NADH dehydrogenase (ubiquinone) chain 5 SUMMARY #length 17 #checksum 1916 SEQUENCE /// ENTRY S09363 #type fragment TITLE hypothetical MTCO1/MTCYB mutant fusion protein - human mitochondrion (fragment) ORGANISM #formal_name mitochondrion Homo sapiens #common_name man DATE 21-Nov-1993 #sequence_revision 14-Aug-1997 #text_change 20-Apr-2000 ACCESSIONS S09363 REFERENCE S09363 !$#authors Poulton, J.; Deadman, M.E.; Gardiner, R.M. !$#journal Nucleic Acids Res. (1989) 17:10223-10229 !$#title Tandem direct duplications of mitochondrial DNA in !1mitochondrial myopathy: analysis of nucleotide sequence and !1tissue distribution. !$#cross-references MUID:90098864; PMID:2602151 !$#accession S09363 !'##molecule_type DNA !'##residues 1-24 ##label POU COMMENT This is the hypothetical translation of a sequence believed !1to result from a deletion mutation. GENETICS !$#gene MTCO1/MTCYB !$#genome mitochondrion !$#genetic_code SGC1 KEYWORDS fusion protein; mitochondrion FEATURE !$1-4 #region cytochrome-c oxidase chain I\ !$5-24 #region cytochrome b (+2 frame shifted) SUMMARY #length 24 #checksum 3070 SEQUENCE /// ENTRY JQ2275 #type complete TITLE serotonin receptor 1D pseudogene - human ALTERNATE_NAMES 5-hydroxytryptamine receptor 1D pseudogene (5-HTR1Dpsi) ORGANISM #formal_name Homo sapiens #common_name man DATE 30-Sep-1993 #sequence_revision 09-May-1996 #text_change 20-Apr-2000 ACCESSIONS JQ2275 REFERENCE JQ2275 !$#authors Nguyen, T.; Marchese, A.; Kennedy, J.L.; Petronis, A.; !1Peroutka, S.J.; Wu, P.H.; O'Dowd, B.F. !$#journal Gene (1993) 124:295-301 !$#title An Alu sequence interupts a human 5-hydroxytryptamine 1D !1receptor pseudogene. !$#cross-references MUID:93185939; PMID:8444354 !$#accession JQ2275 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-302 ##label NGU !'##cross-references GB:L06179; NID:g184436 !'##note this sequence represents an approximate translation of a !1pseudogene, constructed in such a way that three stop codons !1and five partial codons at which frameshifts occur are !1translated as X while the original reading frame is !1preserved GENETICS !$#gene GDB:HTR1DP1 !'##cross-references GDB:138784 !$#map_position 12pter-12qter KEYWORDS pseudogene SUMMARY #length 302 #molecular-weight 33982 #checksum 1935 SEQUENCE /// ENTRY S21403 #type fragment TITLE hemoglobin gamma-G chain artifact - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 22-Nov-1993 #sequence_revision 12-Sep-1997 #text_change 20-Apr-2000 ACCESSIONS S21403 REFERENCE S21402 !$#authors Dmitrenko, V.V.; Kavsan, V.M. !$#submission submitted to the EMBL Data Library, September 1990 !$#description Nucleotide sequence of mitochondrial cytochrome C oxydase II !1from human fetal liver. !$#accession S21403 !'##molecule_type mRNA !'##residues 1-155 ##label DMI !'##cross-references EMBL:X55656; NID:g31724; PIDN:CAA39189.1; !1PID:g31725 !'##note this probably represents a cloning frame-shift or artifact SUMMARY #length 155 #checksum 6658 SEQUENCE /// ENTRY I70075 #type fragment TITLE glycophorin B (mistranslated) - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 21-Feb-1997 #sequence_revision 14-Aug-1997 #text_change 20-Apr-2000 ACCESSIONS I70075 REFERENCE I55334 !$#authors Rearden, A.; Phan, H.; Dubnicoff, T.; Kudo, S.; Fukuda, M. !$#journal J. Biol. Chem. (1990) 265:9259-9263 !$#title Identification of the crossing-over point of a hybrid gene !1encoding human glycophorin variant St-a: Similarity to the !1crossing-over point in haptoglobin-related genes. !$#cross-references MUID:90264417; PMID:1971625 !$#accession I70075 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-13 ##label REA !'##cross-references GB:M33505; GB:J05465; NID:g183726; PIDN:AAA53152.1; !1PID:g442425 !'##note this sequence was not determined in this report; the !1translation is from an incorrect reading frame GENETICS !$#gene GDB:GYPB !'##cross-references GDB:118891 !$#map_position 4q28-4q31 SUMMARY #length 13 #checksum 7309 SEQUENCE /// ENTRY I57650 #type fragment TITLE hemoglobin alpha chain - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 02-Jul-1996 #sequence_revision 31-Jul-1997 #text_change 20-Apr-2000 ACCESSIONS I57650 REFERENCE I57650 !$#authors Whitelaw, E.; Hogben, P.; Hanscombe, O.; Proudfoot, N.J. !$#journal Mol. Cell. Biol. (1989) 9:241-251 !$#title Transcriptional promiscuity of the human alpha-globin gene. !$#cross-references MUID:89181576; PMID:2538719 !$#accession I57650 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-9 ##label WHI !'##cross-references GB:M23454; NID:g340922; PIDN:AAA52629.1; !1PID:g553329 !'##note engineered sequence; this sequence was not determined in this !1report GENETICS !$#gene GDB:HBA1 !'##cross-references GDB:119293 !$#map_position 16p13.3-16p13.3 SUMMARY #length 9 #checksum 3431 SEQUENCE /// ENTRY I52502 #type fragment TITLE hemoglobin beta chain - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 02-Jul-1996 #sequence_revision 31-Jul-1997 #text_change 20-Apr-2000 ACCESSIONS I52502 REFERENCE I52502 !$#authors Liu, J.Z.; Harano, T.; Lanclos, K.D.; Huisman, T.H. !$#journal Biochim. Biophys. Acta (1987) 909:208-212 !$#title The beta-delta crossover leading to the beta delta hybrid !1gene of hemoglobin P-Nilotic is located within 54 base-pairs !1of the 5' end of exon 2 or between codons 31 and 50. !$#cross-references MUID:87299720; PMID:3620470 !$#accession I52502 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-61 ##label LIU !'##cross-references GB:M25660; NID:g183856; PIDN:AAA53153.1; !1PID:g183857 !'##note this sequence was not determined in this report GENETICS !$#gene GDB:HBB !'##cross-references GDB:119297 !$#map_position 11p15.4-11p15.4 !$#introns 31/3 SUMMARY #length 61 #checksum 7466 SEQUENCE /// ENTRY I78580 #type fragment TITLE hemoglobin gamma-G - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 12-Jul-1996 #sequence_revision 31-Jul-1997 #text_change 20-Apr-2000 ACCESSIONS I78580 REFERENCE I58221 !$#authors Powers, P.A.; Altay, C.; Huisman, T.H.; Smithies, O. !$#journal Nucleic Acids Res. (1984) 12:7023-7034 !$#title Two novel arrangements of the human fetal globin genes: G !1gamma-G gamma and A gamma-A gamma. !$#cross-references MUID:85014150; PMID:6091051 !$#accession I78580 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-42 ##label POW !'##cross-references GB:M32250; NID:g183240; PIDN:AAA58610.1; !1PID:g183241 !'##note this sequence was not determined in this report GENETICS !$#gene GDB:HBG2 !'##cross-references GDB:119301 !$#map_position 11p15.5-11p15.5 SUMMARY #length 42 #checksum 290 SEQUENCE /// ENTRY I58221 #type fragment TITLE hemoglobin gamma-A chain - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 02-Jul-1996 #sequence_revision 31-Jul-1997 #text_change 20-Apr-2000 ACCESSIONS I58221 REFERENCE I58221 !$#authors Powers, P.A.; Altay, C.; Huisman, T.H.; Smithies, O. !$#journal Nucleic Acids Res. (1984) 12:7023-7034 !$#title Two novel arrangements of the human fetal globin genes: G !1gamma-G gamma and A gamma-A gamma. !$#cross-references MUID:85014150; PMID:6091051 !$#accession I58221 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-42 ##label POW !'##cross-references GB:M32249; NID:g183238; PIDN:AAA58609.1; !1PID:g183239 !'##note this sequence was not determined in this report GENETICS !$#gene GDB:HBG1 !'##cross-references GDB:119300 !$#map_position 11p15.5-11p15.5 SUMMARY #length 42 #checksum 182 SEQUENCE /// ENTRY A35892 #type fragment TITLE probable urate oxidase pseudogene - human (fragment) ALTERNATE_NAMES uricase ORGANISM #formal_name Homo sapiens #common_name man DATE 09-Nov-1990 #sequence_revision 11-Aug-1995 #text_change 20-Apr-2000 ACCESSIONS A35892 REFERENCE A35892 !$#authors Yeldandi, A.V.; Wang, X.; Alvares, K.; Kumar, S.; Rao, M.S.; !1Reddy, J.K. !$#journal Biochem. Biophys. Res. Commun. (1990) 171:641-646 !$#title Human urate oxidase gene: cloning and partial sequence !1analysis reveal a stop codon within the fifth exon. !$#cross-references MUID:90386634; PMID:2403354 !$#accession A35892 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-132 ##label YEL !'##cross-references GB:M30291; GB:M57468; NID:g639769; GB:M30292; !1GB:M57469; NID:g639770; GB:M30293; GB:M57471; NID:g639771; !1GB:U03647; NID:g434034 COMMENT There is a stop codon in this homolog of exon 5 of the !1mammalian urate oxidase gene and the authors suggest that !1this single stop codon mutation may be responsible for the !1absence of urate oxidase activity in the human and some !1other primates. GENETICS !$#gene GDB:UOX !'##cross-references GDB:127539 !$#map_position 1p22-1p22 KEYWORDS pseudogene FEATURE !$39 #region opal stop codon SUMMARY #length 132 #checksum 7242 SEQUENCE /// ENTRY I39320 #type fragment TITLE T cell receptor alpha chain chromosome inversion product - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 15-Feb-1996 #sequence_revision 15-Feb-1996 #text_change 20-Apr-2000 ACCESSIONS I39320 REFERENCE I39320 !$#authors Baer, R.; Forster, A.; Rabbitts, T.H. !$#journal Cell (1987) 50:97-105 !$#title The mechanism of chromosome 14 inversion in a human T cell !1lymphoma. !$#cross-references MUID:87244329; PMID:3036367 !$#accession I39320 !'##molecule_type DNA !'##residues 1-113 ##label BAE !'##cross-references GB:M16746; NID:g177114; PIDN:AAA51534.1; !1PID:g553160 GENETICS !$#gene TCRA !$#map_position 14q11.2 SUMMARY #length 113 #checksum 9633 SEQUENCE /// ENTRY I39443 #type complete TITLE AML1/EAP mutant fusion protein - human ORGANISM #formal_name Homo sapiens #common_name man DATE 15-Feb-1996 #sequence_revision 15-Feb-1996 #text_change 20-Apr-2000 ACCESSIONS I39443 REFERENCE I39443 !$#authors Nucifora, G.; Begy, C.R.; Erickson, P.; Drabkin, H.A.; !1Rowley, J.D. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1993) 90:7784-7788 !$#title The 3;21 translocation in myelodysplasia results in a fusion !1transcript between the AML1 gene and the gene for EAP, a !1highly conserved protein associated with the Epstein-Barr !1virus small RNA EBER 1. !$#cross-references MUID:93361531; PMID:8395054 !$#accession I39443 !'##molecule_type mRNA !'##residues 1-261 ##label NUC !'##cross-references GB:L21756; NID:g400340; PIDN:AAA03086.1; !1PID:g400341 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene AML1/EAP KEYWORDS fusion protein SUMMARY #length 261 #molecular-weight 28602 #checksum 9656 SEQUENCE /// ENTRY I39461 #type fragment TITLE anti-angiotensin, hypothetical - human (fragment) ALTERNATE_NAMES hypothetical angiotensin receptor antagonist, angiotensin mRNA complementary strand-encoded ORGANISM #formal_name Homo sapiens #common_name man DATE 15-Feb-1996 #sequence_revision 15-Feb-1996 #text_change 20-Apr-2000 ACCESSIONS I39461 REFERENCE I39461 !$#authors Moore, G.J.; Ganter, R.C.; Franklin, K.J. !$#journal Biochem. Biophys. Res. Commun. (1989) 160:1387-1391 !$#title Angiotensin 'antipeptides': (-)messenger RNA complementary !1to human angiotensin II (+)messenger RNA encodes an !1angiotensin receptor antagonist. !$#cross-references MUID:89273605; PMID:2471521 !$#accession I39461 !'##molecule_type mRNA !'##residues 1-18 ##label MOO !'##cross-references GB:M26228; NID:g178641; PIDN:AAA35530.1; !1PID:g178642 !'##note this sequence is the conceptual translation of an nucleotide !1sequence complementary to an mRNA SUMMARY #length 18 #checksum 3205 SEQUENCE /// ENTRY I70076 #type fragment TITLE glycophorin B/glycophorin A mutant fusion protein St-a (mistranslated) - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 24-May-1996 #sequence_revision 14-Aug-1997 #text_change 20-Apr-2000 ACCESSIONS I70076 REFERENCE I55334 !$#authors Rearden, A.; Phan, H.; Dubnicoff, T.; Kudo, S.; Fukuda, M. !$#journal J. Biol. Chem. (1990) 265:9259-9263 !$#title Identification of the crossing-over point of a hybrid gene !1encoding human glycophorin variant St-a: Similarity to the !1crossing-over point in haptoglobin-related genes. !$#cross-references MUID:90264417; PMID:1971625 !$#accession I70076 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-13 ##label REA !'##cross-references GB:M33507; GB:J05465; NID:g183743; PIDN:AAA35942.1; !1PID:g442426 !'##note the translation is from an incorrect reading frame GENETICS !$#gene GYPB/GYPA KEYWORDS fusion protein SUMMARY #length 13 #checksum 7090 SEQUENCE /// ENTRY I55277 #type fragment TITLE hemoglobin alpha chain thalassemia mutant Brooklyn - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 24-May-1996 #sequence_revision 31-May-1996 #text_change 20-Apr-2000 ACCESSIONS I55277 REFERENCE I55277 !$#authors Safaya, S.; Rieder, R.F. !$#journal J. Biol. Chem. (1988) 263:4328-4332 !$#title Dysfunctional alpha-globin gene in hemoglobin H disease in !1blacks. A dinucleotide deletion produces a frameshift and a !1termination codon. !$#cross-references MUID:88153756; PMID:2831226 !$#accession I55277 !'##molecule_type DNA !'##residues 1-26 ##label SAF !'##cross-references GB:M22814; NID:g183799; PIDN:AAA52631.1; !1PID:g183801 !'##note GenBank entry HUMHBADY2 repeats the normal sequence, which was !1not redetermined; the two nucleotide deletion, frame shift !1mutant sequence is presented here GENETICS !$#gene GDB:HBA2 !'##cross-references GDB:119294; OMIM:141850 !$#map_position 16p13.3-16p13.3 SUMMARY #length 26 #checksum 6571 SEQUENCE /// ENTRY I52618 #type fragment TITLE hemoglobin beta chain thalassemia mutant Portuguese - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 02-Jul-1996 #sequence_revision 11-Jul-1996 #text_change 20-Apr-2000 ACCESSIONS I52618 REFERENCE I52618 !$#authors Oner, R.; Oner, C.; Wilson, J.B.; Tamagnini, G.P.; Ribeiro, !1L.M.; Huisman, T.H. !$#journal Br. J. Haematol. (1991) 79:306-310 !$#title Dominant beta-thalassaemia trait in a Portuguese family is !1caused by a deletion of (G)TGGCTGGTGT(G) and an insertion of !1(G)GCAG(G) in codons 134, 135, 136 and 137 of the !1beta-globin gene. !$#cross-references MUID:92068764; PMID:1659862 !$#accession I52618 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-14 ##label ONE !'##cross-references GB:S68042; NID:g239717; PIDN:AAB20440.1; !1PID:g239718 GENETICS !$#gene GDB:HBB !'##cross-references GDB:119297; OMIM:141900 !$#map_position 11p15.4-11p15.4 SUMMARY #length 14 #checksum 8045 SEQUENCE /// ENTRY A58224 #type complete TITLE neutrophil cytosol factor 1 frameshift mutant - human ALTERNATE_NAMES 47K autosomal chronic granulomatous disease protein; NCF-47K protein; p47-phox ORGANISM #formal_name Homo sapiens #common_name man DATE 02-Aug-1996 #sequence_revision 24-Oct-1996 #text_change 20-Apr-2000 ACCESSIONS A58224; I79641 REFERENCE I59190 !$#authors Casimir, C.M.; Bu-Ghanim, H.N.; Rodaway, A.R.F.; Bentley, !1D.L.; Rowe, P.; Segal, A.W. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1991) 88:2753-2757 !$#title Autosomal recessive chronic granulomatous disease caused by !1deletion at a dinucleotide repeat. !$#cross-references MUID:91187870; PMID:2011585 !$#accession A58224 !'##molecule_type mRNA !'##residues 1-50 ##label CAS1 !'##cross-references GB:M60942; NID:g189950 !'##note this translation is not annotated in GenBank entry HUMPHOXE25, !1release 113.0 !$#accession I79641 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 25-32 ##label CAS2 !'##cross-references GB:M60942; NID:g189950; PIDN:AAA60087.1; !1PID:g553612 GENETICS !$#gene GDB:NCF1 !'##cross-references GDB:120222 !$#map_position 7q11.23-7q11.23 SUMMARY #length 50 #molecular-weight 5506 #checksum 6950 SEQUENCE /// ENTRY I38158 #type fragment TITLE rhodopsin fortytwo base deletion frame shift mutant - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 06-Sep-1996 #sequence_revision 08-Nov-1996 #text_change 20-Apr-2000 ACCESSIONS I38158 REFERENCE I38158 !$#authors Restagno, G.; Maghtheh, M.; Bhattacharya, S.; Ferrone, M.; !1Garnerone, S.; Samuelly, R.; Carbonara, A. !$#journal Hum. Mol. Genet. (1993) 2:207-208 !$#title A large deletion at the 3' end of the rhodopsin gene in an !1Italian family with a diffuse form of autosomal dominant !1retinitis pigmentosa. !$#cross-references MUID:93271971; PMID:8499910 !$#accession I38158 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-51 ##label RES !'##cross-references EMBL:X72315; NID:g312853; PIDN:CAA51058.1; !1PID:g312854 GENETICS !$#gene GDB:RHO !'##cross-references GDB:120347 !$#map_position 3q21.3-3q24 SUMMARY #length 51 #checksum 343 SEQUENCE /// ENTRY I54264 #type fragment TITLE rhodopsin single base deletion frame shift mutant - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 02-Jul-1996 #sequence_revision 08-Nov-1996 #text_change 20-Apr-2000 ACCESSIONS I54264 REFERENCE I54264 !$#authors Horn, M.; Humphries, P.; Kunisch, M.; Marchese, C.; !1Apfelstedt-Sylla, E.; Fugi, L.; Zrenner, E.; Kenna, P.; Gal, !1A.; Farrar, J. !$#journal Hum. Genet. (1992) 90:255-257 !$#title Deletions in exon 5 of the human rhodopsin gene causing a !1shift in the reading frame and autosomal dominant retinitis !1pigmentosa. !$#cross-references MUID:93138610; PMID:1487240 !$#accession I54264 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-19 ##label HOR !'##cross-references GB:S55843; NID:g266287; PIDN:AAB25673.1; !1PID:g266288 GENETICS !$#gene GDB:RHO !'##cross-references GDB:120347 !$#map_position 3q21.3-3q24 SUMMARY #length 19 #checksum 4419 SEQUENCE /// ENTRY A58361 #type fragment TITLE protein-tyrosine kinase kit mutant short form - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 13-Nov-1996 #sequence_revision 14-Nov-1996 #text_change 20-Apr-2000 ACCESSIONS A58361; I52699 REFERENCE I52699 !$#authors Toyota, M.; Hinoda, Y.; Itoh, F.; Takaoka, A.; Imai, K.; !1Yachi, A. !$#journal Cancer Res. (1994) 54:272-275 !$#title Complementary DNA cloning and characterization of truncated !1form of c-kit in human colon carcinoma cells. !$#cross-references MUID:94084708; PMID:7505199 !$#accession A58361 !'##molecule_type DNA !'##residues 1-40 ##label TOY1 !'##cross-references GB:S68472; NID:g544579 !'##experimental_source colon carcinoma cell line Colo201 !'##note sequence extracted from NCBI backbone and corrected to !1correspond with the published sequence !$#accession I52699 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 'VVPTKADKRRSVRI',1-40 ##label TOY2 !'##cross-references GB:S68472; NID:g544579; PIDN:AAB29301.1; !1PID:g544580 !'##note this sequence incorrectly presents the fragment of exon !1preceding the alternative initiator within the normal intron !1as though transcribed with it GENETICS !$#gene GDB:KIT !'##cross-references GDB:120117 !$#map_position 4q12-4q12 KEYWORDS alternative initiators; kinase-related transforming protein; !1phosphotransferase; proto-oncogene FEATURE !$1-25 #region transcribed intron\ !$26-40 #region exon 16 SUMMARY #length 40 #checksum 2298 SEQUENCE /// ENTRY I73445 #type complete TITLE dihydrofolate reductase pseudogene - human ORGANISM #formal_name Homo sapiens #common_name man DATE 02-Aug-1996 #sequence_revision 31-Dec-1996 #text_change 20-Apr-2000 ACCESSIONS I73445 REFERENCE I56377 !$#authors Masters, J.N.; Yang, J.K.; Cellini, A.; Attardi, G. !$#journal J. Mol. Biol. (1983) 167:23-36 !$#title A human dihydrofolate reductase pseudogene and its !1relationship to the multiple forms of specific messenger !1RNA. !$#cross-references MUID:83241747; PMID:6306253 !$#accession I73445 !'##status translated from GB/EMBL/DDBJ; conceptual translation of !1pseudogene !'##molecule_type mRNA !'##residues 1-97 ##label MAS !'##cross-references GB:J00146; NID:g182732; PIDN:AAA52469.1; !1PID:g553296 GENETICS !$#gene GDB:DHFRP1 !'##cross-references GDB:119093 !$#map_position 18q12.1-18q12.1 KEYWORDS pseudogene SUMMARY #length 97 #molecular-weight 11490 #checksum 2107 SEQUENCE /// ENTRY I38032 #type fragment TITLE hypothetical MN1/TEL mutant fusion protein type I - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 21-Feb-1997 #sequence_revision 21-Feb-1997 #text_change 20-Apr-2000 ACCESSIONS I38032 REFERENCE I38031 !$#authors Buijs, A.; Sherr, S.; van Baal, S.; van Bezouw, S.; van der !1Plas, D.; Van Kessel, A.G.; Riegman, P.; Lekanne Deprez, R.; !1Zwarthoff, E.; Hagemeijer, A.; Grosveld, G. !$#journal Oncogene (1995) 10:1511-1519 !$#title Translocation (12;22) (p13;q11) in myeloproliferative !1disorders results in fusion of the ETS-like TEL gene on !112p13 to the MN1 gene on 22q11. !$#cross-references MUID:95249265; PMID:7731705 !$#accession I38032 !'##status translated from GB/EMBL/DDBJ !'##molecule_type mRNA !'##residues 1-15 ##label BUI !'##cross-references EMBL:X85025; NID:g971467; PIDN:CAA59398.1; !1PID:g971468 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene MN1/ETV6; MN1/TEL !$#map_position 22q11/12p13 KEYWORDS fusion protein SUMMARY #length 15 #checksum 9575 SEQUENCE /// ENTRY I38031 #type fragment TITLE hypothetical MN1/TEL mutant fusion protein type II - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 21-Feb-1997 #sequence_revision 21-Feb-1997 #text_change 20-Apr-2000 ACCESSIONS I38031 REFERENCE I38031 !$#authors Buijs, A.; Sherr, S.; van Baal, S.; van Bezouw, S.; van der !1Plas, D.; Van Kessel, A.G.; Riegman, P.; Lekanne Deprez, R.; !1Zwarthoff, E.; Hagemeijer, A.; Grosveld, G. !$#journal Oncogene (1995) 10:1511-1519 !$#title Translocation (12;22) (p13;q11) in myeloproliferative !1disorders results in fusion of the ETS-like TEL gene on !112p13 to the MN1 gene on 22q11. !$#cross-references MUID:95249265; PMID:7731705 !$#accession I38031 !'##status translated from GB/EMBL/DDBJ !'##molecule_type mRNA !'##residues 1-15 ##label BUI !'##cross-references EMBL:X85027; NID:g971465; PIDN:CAA59400.1; !1PID:g971466 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene MN1/ETV6; MN1/TEL !$#map_position 22q11/12p13 KEYWORDS fusion protein SUMMARY #length 15 #checksum 9182 SEQUENCE /// ENTRY I38335 #type fragment TITLE hypothetical TEL/MN1 mutant fusion protein type II - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 21-Feb-1997 #sequence_revision 21-Feb-1997 #text_change 20-Apr-2000 ACCESSIONS I38335 REFERENCE I38031 !$#authors Buijs, A.; Sherr, S.; van Baal, S.; van Bezouw, S.; van der !1Plas, D.; Van Kessel, A.G.; Riegman, P.; Lekanne Deprez, R.; !1Zwarthoff, E.; Hagemeijer, A.; Grosveld, G. !$#journal Oncogene (1995) 10:1511-1519 !$#title Translocation (12;22) (p13;q11) in myeloproliferative !1disorders results in fusion of the ETS-like TEL gene on !112p13 to the MN1 gene on 22q11. !$#cross-references MUID:95249265; PMID:7731705 !$#accession I38335 !'##status translated from GB/EMBL/DDBJ !'##molecule_type mRNA !'##residues 1-15 ##label BUI !'##cross-references EMBL:X85024; NID:g971471; PIDN:CAA59397.1; !1PID:g971472 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene ETV6/MN1; TEL/MN1 !$#map_position 22q11/12p13 KEYWORDS fusion protein SUMMARY #length 15 #checksum 8957 SEQUENCE /// ENTRY I51936 #type fragment TITLE hypothetical BCR/ABL mutant fusion protein, clone pV1-3 - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 01-Nov-1996 #sequence_revision 21-Feb-1997 #text_change 20-Apr-2000 ACCESSIONS I51936 REFERENCE I51936 !$#authors De Klein, A.; Hermans, A.; Bootsma, D.; Grosveld, G.; !1Heisterkamp, H.; Stam, K.; Groffen, J. !$#journal Ann. Clin. Res. (1986) 18:278-283 !$#title The role of the Philadelphia translocation in chronic !1myelocytic leukemia. !$#cross-references MUID:87183193; PMID:3471171 !$#accession I51936 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-144 ##label DEK !'##cross-references GB:M25949; NID:g179383; PIDN:AAA35593.1; !1PID:g179385 !'##experimental_source cell line K562, clone pV1-3 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene BCR/ABL !$#map_position 22q11/9q34 !$#introns 25/1; 83/1 KEYWORDS breakpoint cluster region; fusion protein; leukemia SUMMARY #length 144 #checksum 9382 SEQUENCE /// ENTRY I39436 #type fragment TITLE hypothetical BCR/ABL mutant fusion protein, clone A27 - human (fragment) ALTERNATE_NAMES P185-ALL-ABL protein ORGANISM #formal_name Homo sapiens #common_name man DATE 21-Feb-1997 #sequence_revision 21-Feb-1997 #text_change 20-Apr-2000 ACCESSIONS I39436 REFERENCE I39436 !$#authors Clark, S.S.; McLaughlin, J.; Timmons, M.; Pendergast, A.M.; !1Ben-Neriah, Y.; Dow, L.W.; Crist, W.; Rovera, G.; Smith, !1S.D.; Witte, O.N. !$#journal Science (1988) 239:775-777 !$#title Expression of a distinctive BCR-ABL oncogene in !1Ph-1-positive acute lymphocytic leukemia (ALL). !$#cross-references MUID:88127138; PMID:3422516 !$#accession I39436 !'##molecule_type mRNA !'##residues 1-163 ##label CLA !'##cross-references GB:M19730; NID:g178416; PIDN:AAA35520.1; !1PID:g553175 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene BCR/ABL !$#map_position 22q11/9q34 KEYWORDS acute lymphoblastic leukemia; breakpoint cluster region; !1fusion protein SUMMARY #length 163 #checksum 8381 SEQUENCE /// ENTRY I52794 #type fragment TITLE hypothetical BCR/ABL mutant fusion protein, clone D11 - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 21-Feb-1997 #sequence_revision 21-Feb-1997 #text_change 20-Apr-2000 ACCESSIONS I52794 REFERENCE I52794 !$#authors Hermans, A.; von Lindern, M.; van Baal, S.; Meijer, D.; van !1der Plas, D.; Wiedemann, L.M.; Groffen, J.; Bootsma, D.; !1Grosveld, G. !$#journal Cell (1987) 51:33-40 !$#title Unique fusion of bcr and c-abl genes in Philadelphial !1chromosome positive acute lymphoblastic leukemia. !$#cross-references MUID:88002326; PMID:2820585 !$#accession I52794 !'##status translated from GB/EMBL/DDBJ !'##molecule_type mRNA !'##residues 1-21 ##label HER !'##cross-references GB:M17541; NID:g179379; PIDN:AAA35592.1; !1PID:g179380 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene BCR/ABL !$#map_position 22q11/9q34 !$#introns 11/1 KEYWORDS acute lymphoblastic leukemia; breakpoint cluster region; !1fusion protein SUMMARY #length 21 #checksum 6990 SEQUENCE /// ENTRY I51887 #type fragment TITLE hypothetical EWSR1/FLI1 mutant fusion protein, type 1 - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 21-Feb-1997 #sequence_revision 21-Feb-1997 #text_change 20-Apr-2000 ACCESSIONS I51887 REFERENCE I51887 !$#authors Downing, J.R.; Head, D.R.; Parham, D.M.; Douglass, E.C.; !1Hulshof, M.G.; Link, M.P.; Motroni, T.A.; Grier, H.E.; !1Curcio-Brint, A.M.; Shapiro, D.N. !$#journal Am. J. Pathol. (1993) 143:1294-1300 !$#title Detection of the (11;22)(q24;q12) translocation of Ewing's !1sarcoma and peripheral neuroectodermal tumor by reverse !1transcription polymerase chain reaction. !$#cross-references MUID:94056652; PMID:8238248 !$#accession I51887 !'##status translated from GB/EMBL/DDBJ !'##molecule_type mRNA !'##residues 1-17 ##label DOW !'##cross-references GB:S66911; NID:g440935; PIDN:AAB28655.1; !1PID:g440936 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene EWSR1/FLI1; EWS/FLI-1 !$#map_position 22q12/11q24 KEYWORDS fusion protein SUMMARY #length 17 #checksum 1452 SEQUENCE /// ENTRY I52698 #type fragment TITLE hypothetical THRA1/BTR mutant fusion protein, cell line BT474 - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 21-Feb-1997 #sequence_revision 21-Feb-1997 #text_change 20-Apr-2000 ACCESSIONS I52698 REFERENCE I52698 !$#authors Futreal, P.A.; Cochran, C.; Marks, J.R.; Iglehart, J.D.; !1Zimmerman, W.; Barrett, J.C.; Wiseman, R.W. !$#journal Cancer Res. (1994) 54:1791-1794 !$#title Mutation analysis of the THRA1 gene in breast cancer: !1deletion/fusion of the gene to a novel sequence on 17q in !1the BT474 cell line. !$#cross-references MUID:94185019; PMID:7511052 !$#accession I52698 !'##status translated from GB/EMBL/DDBJ !'##molecule_type mRNA !'##residues 1-15 ##label FUT !'##cross-references GB:S71020; NID:g546111; PIDN:AAB30341.1; !1PID:g546112 COMMENT This sequence is the chimeric product of a deletion or !1translocation mutation. GENETICS !$#gene THRA1/BTR !$#map_position 17q11.2 KEYWORDS fusion protein SUMMARY #length 15 #checksum 9675 SEQUENCE /// ENTRY I52626 #type fragment TITLE hypothetical FUS/ERG mutant fusion protein - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 01-Nov-1996 #sequence_revision 22-May-1997 #text_change 20-Apr-2000 ACCESSIONS I52626 REFERENCE I52626 !$#authors Hiyoshi, M.; Yamane, T.; Hirai, M.; Tagawa, S.; Hattori, H.; !1Nakao, Y.; Yasui, Y.; Koh, K.R.; Hino, M.; Tatsumi, N. !$#journal Br. J. Haematol. (1995) 90:417-424 !$#title Establishment and characterization of IRTA17 and IRTA21, two !1novel acute non-lymphocytic leukaemia cell lines with t !1(16;21) translocation. !$#cross-references MUID:95315030; PMID:7794765 !$#accession I52626 !'##status translated from GB/EMBL/DDBJ !'##molecule_type mRNA !'##residues 1-70 ##label HIY !'##cross-references GB:S77574; NID:g957350; PIDN:AAB34715.1; !1PID:g957351 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene FUS/ERG !$#map_position 16p11/21q22 KEYWORDS fusion protein FEATURE !$1-30 #region RNA-binding protein FUS\ !$31-70 #region transforming protein erg-2 SUMMARY #length 70 #checksum 3015 SEQUENCE /// ENTRY S03158 #type fragment TITLE hypothetical BCR/ABL mutant fusion protein - human (fragment) ALTERNATE_NAMES chimeric breakpoint cluster region protein/kinase-related transforming protein ORGANISM #formal_name Homo sapiens #common_name man DATE 31-Dec-1991 #sequence_revision 01-Mar-1996 #text_change 20-Apr-2000 ACCESSIONS S03158; S00655 REFERENCE S03158 !$#authors Fainstein, E.; Marcelle, C.; Rosner, A.; Canaani, E.; Gale, !1R.P.; Dreazen, O.; Smith, S.D.; Croce, C.M. !$#journal Nature (1987) 330:386-388 !$#title A new fused transcript in Philadelphia chromosome positive !1acute lymphocytic leukaemia. !$#cross-references MUID:88065859; PMID:2825022 !$#accession S03158 !'##molecule_type mRNA !'##residues 1-386 ##label FAI !'##cross-references EMBL:X06418; NID:g28628; PIDN:CAA29726.1; !1PID:g28629 REFERENCE S00655 !$#authors ar-Rushdi, A.; Negrini, M.; Kurzrock, R.; Huebner, K.; !1Croce, C.M. !$#journal Oncogene (1988) 2:353-357 !$#title Fusion of the bcr and the c-abl genes in Ph'-positive acute !1lymphocytic leukemia with no rearrangement in the breakpoint !1cluster region. !$#cross-references MUID:88202926; PMID:3283653 !$#accession S00655 !'##status translation not shown !'##molecule_type mRNA !'##residues 357-382,'E',384-390 ##label ARR !'##cross-references EMBL:X07537; NID:g36673; PIDN:CAA30410.1; !1PID:g930105 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene BCR/ABL !$#map_position 9q34/22q11 KEYWORDS breakpoint cluster region; fusion protein; !1phosphotransferase; transforming protein FEATURE !$1-371 #region bcr protein (fragment)\ !$372-390 #region abl transforming protein (fragment) SUMMARY #length 390 #checksum 6458 SEQUENCE /// ENTRY I38491 #type complete TITLE nucleophosmin/anaplastic lymphoma kinase mutant fusion protein - human ORGANISM #formal_name Homo sapiens #common_name man DATE 15-Feb-1996 #sequence_revision 15-Feb-1996 #text_change 20-Apr-2000 ACCESSIONS I38491 REFERENCE A53182 !$#authors Morris, S.W.; Kirstein, M.N.; Valentine, M.B.; Dittmer, !1K.G.; Shapiro, D.N.; Saltman, D.L.; Look, A.T. !$#journal Science (1994) 263:1281-1284 !$#title Fusion of a kinase gene, ALK, to a nucleolar protein gene, !1NPM, in non-Hodgkin's lymphoma. !$#cross-references MUID:94167588; PMID:8122112 !$#accession I38491 !'##molecule_type mRNA !'##residues 1-680 ##label MOR !'##cross-references EMBL:U04946; NID:g609341; PIDN:AAA58698.1; !1PID:g609342 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene NPM1/ALK !$#map_position 5/2p23-2p23 KEYWORDS fusion protein SUMMARY #length 680 #molecular-weight 75314 #checksum 1614 SEQUENCE /// ENTRY B34734 #type complete TITLE transcription factor 3/homeotic protein prl mutant fusion protein I - human ALTERNATE_NAMES E2A/prl mutant fusion protein I ORGANISM #formal_name Homo sapiens #common_name man DATE 13-Jul-1990 #sequence_revision 17-Nov-1995 #text_change 20-Apr-2000 ACCESSIONS B34734; A34733 REFERENCE A34734 !$#authors Kamps, M.P.; Murre, C.; Sun, X.; Baltimore, D. !$#journal Cell (1990) 60:547-555 !$#title A new homeobox gene contributes the DNA binding domain of !1the t(1;19) translocation protein in pre-B ALL. !$#cross-references MUID:90150282; PMID:1967983 !$#accession B34734 !'##status not compared with conceptual translation !'##molecule_type mRNA !'##residues 1-825 ##label KAM !'##cross-references GB:M31522; NID:g339894; PIDN:AAA36764.1; !1PID:g339895 REFERENCE A34733 !$#authors Nourse, J.; Mellentin, J.D.; Galili, N.; Wilkinson, J.; !1Stanbridge, E.; Smith, S.D.; Cleary, M.L. !$#journal Cell (1990) 60:535-545 !$#title Chromosomal translocation t(1;19) results in synthesis of a !1homeobox fusion mRNA that codes for a potential chimeric !1transcription factor. !$#cross-references MUID:90150281; PMID:1967982 !$#accession A34733 !'##molecule_type mRNA !'##residues 7-579,'DE',582-825 ##label NOU !'##cross-references GB:M31170; NID:g190357; PIDN:AAA36484.1; !1PID:g190358 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene TCF3/PBX1 KEYWORDS fusion protein SUMMARY #length 825 #molecular-weight 85468 #checksum 4881 SEQUENCE /// ENTRY C40045 #type complete TITLE probable transcription factor PML/retinoic acid receptor alpha mutant fusion protein - human ORGANISM #formal_name Homo sapiens #common_name man DATE 05-Jun-1992 #sequence_revision 17-Nov-1995 #text_change 20-Apr-2000 ACCESSIONS C40045; B40044 REFERENCE A40045 !$#authors de The, H.; Lavau, C.; Marchio, A.; Chomienne, C.; Degos, !1L.; Dejean, A. !$#journal Cell (1991) 66:675-684 !$#title The PML-RARalpha fusion mRNA generated by the t(15;17) !1translocation in acute promyelocytic leukemia encodes a !1functionally altered RAR. !$#cross-references MUID:91347369; PMID:1652369 !$#accession C40045 !'##molecule_type mRNA !'##residues 1-955 ##label DET !'##cross-references GB:S50916; NID:g234248; PIDN:AAB19602.1; !1PID:g234249 REFERENCE A40044 !$#authors Kakizuka, A.; Miller Jr., W.H.; Umesono, K.; Warrell Jr., !1R.P.; Frankel, S.R.; Murty, V.V.V.S.; Dmitrovsky, E.; Evans, !1R.M. !$#journal Cell (1991) 66:663-674 !$#title Chromosomal translocation t(15;17) in human acute !1promyelocytic leukemia fuses RARalpha with a novel putative !1transcription factor, PML. !$#cross-references MUID:91347368; PMID:1652368 !$#accession B40044 !'##molecule_type mRNA !'##residues 1-394,553-955 ##label KAK !'##cross-references GB:M73779; NID:g190124; PIDN:AAA60126.1; !1PID:g190125 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene PML/RARA !$#map_position 15q22/17q12 KEYWORDS alternative splicing; fusion protein FEATURE !$57-227 #region cysteine-rich\ !$581-601 #region zinc finger motif\ !$617-641 #region zinc finger motif SUMMARY #length 955 #molecular-weight 105806 #checksum 1049 SEQUENCE /// ENTRY I38336 #type fragment TITLE hypothetical TEL/MN1 mutant fusion protein type I - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 21-Feb-1997 #sequence_revision 21-Feb-1997 #text_change 20-Apr-2000 ACCESSIONS I38336 REFERENCE I38031 !$#authors Buijs, A.; Sherr, S.; van Baal, S.; van Bezouw, S.; van der !1Plas, D.; Van Kessel, A.G.; Riegman, P.; Lekanne Deprez, R.; !1Zwarthoff, E.; Hagemeijer, A.; Grosveld, G. !$#journal Oncogene (1995) 10:1511-1519 !$#title Translocation (12;22) (p13;q11) in myeloproliferative !1disorders results in fusion of the ETS-like TEL gene on !112p13 to the MN1 gene on 22q11. !$#cross-references MUID:95249265; PMID:7731705 !$#accession I38336 !'##status translated from GB/EMBL/DDBJ !'##molecule_type mRNA !'##residues 1-15 ##label BUI !'##cross-references EMBL:X85026; NID:g971473; PIDN:CAA59399.1; !1PID:g971474 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene ETV6/MN1; TEL/MN1 !$#map_position 22q11/12p13 KEYWORDS fusion protein SUMMARY #length 15 #checksum 8900 SEQUENCE /// ENTRY A28755 #type fragment TITLE hypothetical gene cob intron 2 encoded protein - Neurospora crassa mitochondrion (fragment) ORGANISM #formal_name mitochondrion Neurospora crassa DATE 14-Aug-1998 #sequence_revision 14-Aug-1998 #text_change 20-Apr-2000 ACCESSIONS A28755 REFERENCE A28755 !$#authors Burke, J.M.; Breitenberger, C.; Heckman, J.E.; Dujon, B.; !1RajBhandary, U.L. !$#journal J. Biol. Chem. (1984) 259:504-511 !$#title Cytochrome b gene of Neurospora crassa mitochondria. !$#cross-references MUID:84161957; PMID:6231283 !$#accession A28755 !'##molecule_type DNA !'##residues 1-346 ##label BUR !'##cross-references GB:K01181; NID:g342694 !'##note this ORF is not translated in GenBank entry NEUMTCYB, release !1106.0 COMMENT See PIR:B28755 for the spliced cytochrome b. GENETICS !$#genome mitochondrion !$#genetic_code SGC3 KEYWORDS mitochondrion FEATURE !$1-32 #region cytochrome b exon encoded\ !$33-346 #region cytochrome b intron encoded SUMMARY #length 346 #checksum 959 SEQUENCE /// ENTRY I54372 #type complete TITLE collagen alpha 1(X) chain mutant - human ORGANISM #formal_name Homo sapiens #common_name man DATE 12-Nov-1999 #sequence_revision 12-Nov-1999 #text_change 20-Apr-2000 ACCESSIONS I54372 REFERENCE I54372 !$#authors Dharmavaram, R.M.; Elberson, M.A.; Peng, M.; Kirson, L.A.; !1Kelley, T.E.; Jimenez, S.A. !$#journal Hum. Mol. Genet. (1994) 3:507-509 !$#title Identification of a mutation in type X collagen in a family !1with Schmid metaphyseal chondrodysplasia. !$#cross-references MUID:94282047; PMID:8012364 !$#accession I54372 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-51 ##label DHA !'##cross-references GB:S73619; NID:g688346; PIDN:AAB31113.1; !1PID:g688347 GENETICS !$#gene GDB:COL10A1 !'##cross-references GDB:128635; OMIM:120110 !$#map_position 6q21-6q22 SUMMARY #length 51 #molecular-weight 5595 #checksum 4811 SEQUENCE /// ENTRY I55382 #type fragment TITLE hypothetical peptide PAI1 promoter region - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 16-Apr-1999 #sequence_revision 16-Apr-1999 #text_change 20-Apr-2000 ACCESSIONS I55382 REFERENCE I55382 !$#authors Dawson, S.J.; Wiman, B.; Hamsten, A.; Green, F.; Humphries, !1S.; Henney, A.M. !$#journal J. Biol. Chem. (1993) 268:10739-10745 !$#title The two allele sequences of a common polymorphism in the !1promoter of the plasminogen activator inhibitor-1 (PAI-1) !1gene respond differently to interleukin-1 in HepG2 cells. !$#cross-references MUID:93266509; PMID:8388372 !$#accession I55382 !'##status translation not shown; translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-7 ##label DAW !'##cross-references GB:M91557; NID:g190020; PIDN:AAA60110.1; !1PID:g190021 COMMENT This is the hypothetical translation of a sequence from the !1PAI1 gene promoter region and is not thought to be !1transcribed or translated. GENETICS !$#gene GDB:PAI1 !'##cross-references GDB:120297; OMIM:173360 !$#map_position 7q21.3-7q22 SUMMARY #length 7 #checksum 2083 SEQUENCE /// ENTRY JN0029 #type complete TITLE serum amyloid A3 pseudogene - human ORGANISM #formal_name Homo sapiens #common_name man DATE 20-Feb-1995 #sequence_revision 17-May-1996 #text_change 20-Apr-2000 ACCESSIONS JN0029 REFERENCE JN0029 !$#authors Sack Jr., G.H.; Talbot Jr., C.C. !$#journal Gene (1989) 84:509-515 !$#title The human serum amyloid A (SAA)-encoding gene GSAA1: !1nucleotide sequence and possible !1autocrine-collagenase-inducer function. !$#accession JN0029 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-122 ##label SAC !'##cross-references EMBL:X13895; NID:g36305; PIDN:CAA32096.1; !1PID:g36306 REFERENCE A38974 !$#authors Steel, D.M.; Sellar, G.C.; Uhlar, C.M.; Simon, S.; DeBeer, !1F.C.; Whitehead, A.S. !$#journal Genomics (1993) 16:447-454 !$#title A constitutively expressed serum amyloid A protein gene !1(SAA4) is closely linked to, and shares structural !1similarities with, an acute-phase serum amyloid A protein !1gene (SAA2). !$#cross-references MUID:93300520; PMID:7686132 !$#contents annotation !$#note references cited confirm a frameshift error between codons !130 and 32 that leads to an in-frame stop codon at 43 GENETICS !$#gene GDB:SAA3; GSAA1 !'##cross-references GDB:132593 !$#map_position 11p15.1-p14 !$#introns 31/1; 77/2 KEYWORDS pseudogene SUMMARY #length 122 #molecular-weight 13440 #checksum 2835 SEQUENCE /// ENTRY I59615 #type fragment TITLE protein C frame shift mutant - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 16-Apr-1999 #sequence_revision 16-Apr-1999 #text_change 20-Apr-2000 ACCESSIONS I59615 REFERENCE I59615 !$#authors Tokunaga, F.; Wakabayashi, S.; Sato, H.; Arakawa, M.; !1Tawaraya, H.; Koide, T. !$#journal Thromb. Res. (1992) 68:417-423 !$#title Identification of one base deletion in exon IX of the !1protein C gene that causes a type I deficiency. !$#cross-references MUID:93174420; PMID:1290170 !$#accession I59615 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-84 ##label TOK !'##cross-references GB:S55227; NID:g265667; PIDN:AAB25410.1; !1PID:g265668 COMMENT This protein arises from a frame shift mutation in protein C !1at residue 423 (see PIR:KXHU). GENETICS !$#gene GDB:PROC !'##cross-references GDB:120317; OMIM:176860 !$#map_position 2q13-2q21 SUMMARY #length 84 #checksum 4644 SEQUENCE /// ENTRY FOHUE1 #type complete TITLE retrovirus-related gag polyprotein (version 1) pseudogene - human ORGANISM #formal_name Homo sapiens #common_name man DATE 28-Dec-1987 #sequence_revision 04-Jan-1996 #text_change 20-Apr-2000 ACCESSIONS A24483 REFERENCE A93023 !$#authors Ono, M.; Yasunaga, T.; Miyata, T.; Ushikubo, H. !$#journal J. Virol. (1986) 60:589-598 !$#title Nucleotide sequence of human endogenous retrovirus genome !1related to the mouse mammary tumor virus genome. !$#cross-references MUID:87036922; PMID:3021993 !$#accession A24483 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-283 ##label ONO !'##cross-references GB:M14123; NID:g182227; PIDN:AAA88030.1; !1PID:g488473 GENETICS !$#gene gag KEYWORDS core protein; polyprotein; pseudogene SUMMARY #length 283 #molecular-weight 32385 #checksum 5772 SEQUENCE /// ENTRY PS0080 #type fragment TITLE probable naringenin-chalcone synthase L pseudogene - garden petunia (fragment) ORGANISM #formal_name Petunia x hybrida #common_name garden petunia DATE 17-Mar-2000 #sequence_revision 17-Mar-2000 #text_change 17-Mar-2000 ACCESSIONS PS0080 REFERENCE JS0308 !$#authors Koes, R.E.; Spelt, C.E.; van den Elzen, P.J.M.; Mol, J.N.M. !$#journal Gene (1989) 81:245-257 !$#title Cloning and molecular characterization of the chalcone !1synthase multigene family of Petunia hybrida. !$#cross-references MUID:90034197; PMID:2806915 !$#accession PS0080 !'##status conceptual translation of pseudogene !'##molecule_type mRNA !'##residues 1-59 ##label KOE !'##cross-references GB:X14598; NID:g20539; PIDN:CAA32738.1; PID:g20540 !'##experimental_source strain Violet 30, leaf !'##note the sequence is revised in GenBank entry PHCHSL, release 114, !1PIDN:CAA32738.1 GENETICS !$#gene chsL !$#map_position II !$#note chsL is a fragmented chs gene; only exon 1 is located, exon !12 probably does not exist KEYWORDS pseudogene SUMMARY #length 59 #checksum 5072 SEQUENCE /// ENTRY WJFF4I #type fragment TITLE hypothetical homeotic protein anti-engrailed - fruit fly (Drosophila melanogaster) (fragment) ORGANISM #formal_name Drosophila melanogaster DATE 03-Mar-2000 #sequence_revision 03-Mar-2000 #text_change 03-Mar-2000 ACCESSIONS A03323 REFERENCE A93354 !$#authors Fjose, A.; McGinnis, W.J.; Gehring, W.J. !$#journal Nature (1985) 313:284-289 !$#title Isolation of a homoeo box-containing gene from the engrailed !1region of Drosophila and the spatial distribution of its !1transcripts. !$#cross-references MUID:90114393; PMID:2481829 !$#accession A03323 !'##molecule_type DNA !'##residues 1-69 ##label FJO !'##cross-references GB:X01765; GB:K03059; NID:g8084 !'##note the authors translated the codon GGA for residue 12 as Glu; the !1translation is taken from Fig. 6 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. It !1was translated from the opposite strand of the engrailed !1locus. GENETICS !$#gene FlyBase:en !'##cross-references FlyBase:FBgn0000577 !$#map_position 2R,62.0 (48A1-4) KEYWORDS embryo; homeobox SUMMARY #length 69 #checksum 5343 SEQUENCE /// ENTRY I59183 #type fragment TITLE hypothetical serine-pyruvate transaminase precursor, mitochondrial - human (fragment) ALTERNATE_NAMES alanine-glyoxylate transaminase ORGANISM #formal_name Homo sapiens #common_name man DATE 03-Mar-2000 #sequence_revision 03-Mar-2000 #text_change 03-Mar-2000 ACCESSIONS I59183 REFERENCE I59183 !$#authors Purdue, P.E.; Allsop, J.; Isaya, G.; Rosenberg, L.E.; !1Danpure, C.J. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1991) 88:10900-10904 !$#title Mistargeting of peroxisomal L-alanine:glyoxylate !1aminotransferase to mitochondria in primary hyperoxaluria !1patients depends upon activation of a cryptic mitochondrial !1targeting sequence by a point mutation. !$#cross-references MUID:92073394; PMID:1961759 !$#accession I59183 !'##status translated from GB/EMBL/DDBJ !'##molecule_type mRNA !'##residues 1-26 ##label PUR !'##cross-references GB:S71388; NID:g239842; PIDN:AAB20488.1; !1PID:g239843 COMMENT This hypothetical translation initiates at an ATA codon 22 !1codons before the true initiator (see PIR:XNHUSP). This !1sequence probably represents a now unused alternative !1initiator encoding a mitochondrial transit peptide (see !1PIR:S24154). GENETICS !$#gene GDB:AGXT; SPAT !'##cross-references GDB:127113; OMIM:259900 !$#map_position 2q37.3-2q37.3 SUMMARY #length 26 #checksum 6566 SEQUENCE /// ENTRY I73804 #type fragment TITLE hypothetical E2 protein - human papillomavirus type 16 (fragment) ORGANISM #formal_name human papillomavirus type 16 DATE 18-Feb-2000 #sequence_revision 18-Feb-2000 #text_change 18-Feb-2000 ACCESSIONS I73804 REFERENCE I56695 !$#authors Schneider-Maunoury, S.; Croissant, O.; Orth, G. !$#journal J. Virol. (1987) 61:3295-3298 !$#title Integration of human papillomavirus type 16 DNA sequences: a !1possible early event in the progression of genital tumors. !$#cross-references MUID:87311896; PMID:3041049 !$#accession I73804 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-9 ##label SCH !'##cross-references GB:M31225; NID:g190254; PIDN:AAA65996.1; !1PID:g553617 COMMENT This is the hypothetical translation of a viral sequence !1integrated into the DNA of transformed cells. It is not !1thought to be either transcribed or translated. SUMMARY #length 9 #checksum 3413 SEQUENCE /// ENTRY I56695 #type fragment TITLE hypothetical L2 protein (mistranslated) - human papillomavirus type 16 (fragment) ORGANISM #formal_name human papillomavirus type 16 DATE 18-Feb-2000 #sequence_revision 18-Feb-2000 #text_change 18-Feb-2000 ACCESSIONS I56695 REFERENCE I56695 !$#authors Schneider-Maunoury, S.; Croissant, O.; Orth, G. !$#journal J. Virol. (1987) 61:3295-3298 !$#title Integration of human papillomavirus type 16 DNA sequences: a !1possible early event in the progression of genital tumors. !$#cross-references MUID:87311896; PMID:3041049 !$#accession I56695 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-7 ##label SCH !'##cross-references GB:M30709; NID:g190253; PIDN:AAA65995.1; !1PID:g553616 COMMENT This is the hypothetical translation of a viral sequence !1integrated into the DNA of transformed cells. It is not !1thought to be either transcribed or translated. COMMENT It is translated in an incorrect, -1, reading frame of the !1L2 protein. SUMMARY #length 7 #checksum 2251 SEQUENCE /// ENTRY I50632 #type complete TITLE hypothetical CPS1 pseudogene - chicken ORGANISM #formal_name Gallus gallus #common_name chicken DATE 18-Feb-2000 #sequence_revision 18-Feb-2000 #text_change 18-Feb-2000 ACCESSIONS I50632 REFERENCE I50632 !$#authors Alsip, G.R.; Konkel, D.A. !$#journal Nucleic Acids Res. (1986) 14:2123-2138 !$#title A processed chicken pseudogene (CPS1) related to the ras !1oncogene superfamily. !$#cross-references MUID:86176718; PMID:3083400 !$#accession I50632 !'##status translated from GB/EMBL/DDBJ; conceptual translation of !1pseudogene !'##molecule_type DNA !'##residues 1-175 ##label ALS !'##cross-references EMBL:X03682; NID:g63334; PIDN:CAA27317.1; !1PID:g63335 COMMENT This sequence is not thought to be translated. KEYWORDS pseudogene SUMMARY #length 175 #molecular-weight 20096 #checksum 3111 SEQUENCE /// ENTRY I79565 #type fragment TITLE hypothetical TCL3/TCRD (T-cell receptor delta chain) mutant fusion protein - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 28-Jan-2000 #sequence_revision 28-Jan-2000 #text_change 28-Jan-2000 ACCESSIONS I79565 REFERENCE I59162 !$#authors Zutter, M.; Hockett, R.D.; Roberts, C.W.; McGuire, E.A.; !1Bloomstone, J.; Morton, C.C.; Deaven, L.L.; Crist, W.M.; !1Carroll, A.J.; Korsmeyer, S.J. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1990) 87:3161-3165 !$#title The t(10;14)(q24;q11) of T-cell acute lymphoblastic leukemia !1juxtaposes the delta T-cell receptor with TCL3, a conserved !1and activated locus at 10q24. !$#cross-references MUID:90222189; PMID:2326274 !$#accession I79565 !'##status translation not shown; translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-16 ##label ZUT !'##cross-references GB:M33602; NID:g339907; PIDN:AAA66450.1; !1PID:g804786 COMMENT This sequence is the hypothetical translation of a chimeric !1translocation mutation. KEYWORDS fusion protein FEATURE !$1-5 #region TCL3 proto-oncogene derived\ !$10-16 #region T-cell receptor delta chain derived SUMMARY #length 16 #checksum 9919 SEQUENCE /// ENTRY I79564 #type fragment TITLE hypothetical TCL3 protein (mistranslated) - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 28-Jan-2000 #sequence_revision 28-Jan-2000 #text_change 28-Jan-2000 ACCESSIONS I79564 REFERENCE I59162 !$#authors Zutter, M.; Hockett, R.D.; Roberts, C.W.; McGuire, E.A.; !1Bloomstone, J.; Morton, C.C.; Deaven, L.L.; Crist, W.M.; !1Carroll, A.J.; Korsmeyer, S.J. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1990) 87:3161-3165 !$#title The t(10;14)(q24;q11) of T-cell acute lymphoblastic leukemia !1juxtaposes the delta T-cell receptor with TCL3, a conserved !1and activated locus at 10q24. !$#cross-references MUID:90222189; PMID:2326274 !$#accession I79564 !'##status translation not shown; translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-6 ##label ZUT !'##cross-references GB:M33602; NID:g339907; PIDN:AAA66449.1; !1PID:g807656 COMMENT This is the hypothetical translation of a sequence !1translated in an incorrect reading frame of HOX11 (TCL3). SUMMARY #length 6 #checksum 1470 SEQUENCE /// ENTRY I54017 #type fragment TITLE granulocyte-colony stimulating factor precursor - synthetic (fragment) ORGANISM #formal_name synthetic #note human gene engineered and expressed in Echerichia coli DATE 28-Jan-2000 #sequence_revision 28-Jan-2000 #text_change 28-Jan-2000 ACCESSIONS I54017 REFERENCE I54017 !$#authors Devlin, P.E.; Drummond, R.J.; Toy, P.; Mark, D.F.; Watt, !1K.W.; Devlin, J.J. !$#journal Gene (1988) 65:13-22 !$#title Alteration of amino-terminal codons of human !1granulocyte-colony-stimulating factor increases expression !1levels and allows efficient processing by methionine !1aminopeptidase in Escherichia coli. !$#cross-references MUID:88284374; PMID:2456256 !$#accession I54017 !'##status translated from GB/EMBL/DDBJ !'##molecule_type mRNA !'##residues 1-8 ##label DEV !'##cross-references GB:M20922; NID:g806638; PIDN:AAA66353.1; !1PID:g183043 SUMMARY #length 8 #checksum 2743 SEQUENCE /// ENTRY I55411 #type fragment TITLE hypothetical histone H2A.X (mistranslated) - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 28-Jan-2000 #sequence_revision 28-Jan-2000 #text_change 28-Jan-2000 ACCESSIONS I55411 REFERENCE I55411 !$#authors Ivanova, V.S.; Hatch, C.L.; Bonner, W.M. !$#journal J. Biol. Chem. (1994) 269:24189-24194 !$#title Characterization of the human histone H2A.X gene. Comparison !1of its promoter with other H2A gene promoters. !$#cross-references MUID:95014156; PMID:7929075 !$#accession I55411 !'##status translation not shown; translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-8 ##label IVA !'##cross-references GB:S73863; NID:g765295; PIDN:AAD14141.1; !1PID:g4261841 !'##note this is a hypothetical translation of a sequence from the !1promotor region preceeding the initiation codon GENETICS !$#gene H2A.X SUMMARY #length 8 #checksum 2629 SEQUENCE /// ENTRY TVHUT #type complete TITLE transforming protein C-myc, Burkitt lymphoma translocation mutant - human ORGANISM #formal_name Homo sapiens #common_name man DATE 24-Nov-1999 #sequence_revision 24-Nov-1999 #text_change 24-Nov-1999 ACCESSIONS A01350 REFERENCE A01350 !$#authors Rabbitts, T.H.; Hamlyn, P.H.; Baer, R. !$#journal Nature (1983) 306:760-765 !$#title Altered nucleotide sequences of a translocated c-myc gene in !1Burkitt lymphoma. !$#cross-references MUID:84093574; PMID:6419122 !$#accession A01350 !'##molecule_type DNA !'##residues 1-440 ##label RAB !'##cross-references GB:K02276; NID:g188927; PIDN:AAA36340.1; !1PID:g386966 COMMENT This sequence is the chimeric product of a translocation !1mutation from chromosome 8 to chromosome 14. There are 25 !1base changes from the normal MYC gene, probably due to !1somatic mutation during and after translocation. GENETICS !$#gene GDB:MYC !'##cross-references GDB:120208; OMIM:190080 !$#map_position 8q24.12-8q24.13 !$#introns 254/1 KEYWORDS DNA binding; leucine zipper; transcription regulation; !1transforming protein FEATURE !$14-438 #domain myc transforming protein homology #label MYC\ !$407-435 #region leucine zipper motif SUMMARY #length 440 #molecular-weight 48969 #checksum 2692 SEQUENCE /// ENTRY I59064 #type complete TITLE transforming protein C-myc, Burkitt lymphoma translocation double frame shift mutant - human ORGANISM #formal_name Homo sapiens #common_name man DATE 24-Nov-1999 #sequence_revision 24-Nov-1999 #text_change 24-Nov-1999 ACCESSIONS I59064 REFERENCE I59064 !$#authors Murphy, W.; Sarid, J.; Taub, R.; Vasicek, T.; Battey, J.; !1Lenoir, G.; Leder, P. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1986) 83:2939-2943 !$#title A translocated human c-myc oncogene is altered in a !1conserved coding sequence. !$#cross-references MUID:86206069; PMID:3517879 !$#accession I59064 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-248 ##label MUR !'##cross-references GB:M13211; NID:g188955; PIDN:AAA59884.1; !1PID:g553595 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene GDB:MYC !'##cross-references GDB:120208; OMIM:190080 !$#map_position 8q24.12-8q24.13 KEYWORDS DNA binding; leucine zipper; transcription regulation; !1transforming protein SUMMARY #length 248 #molecular-weight 27313 #checksum 7073 SEQUENCE /// ENTRY WZVZC1 #type complete TITLE 19K truncated HindIII-N protein - vaccinia virus (strain WR) ORGANISM #formal_name vaccinia virus DATE 24-Nov-1999 #sequence_revision 24-Nov-1999 #text_change 24-Nov-1999 ACCESSIONS D33349 REFERENCE A94385 !$#authors Kotwal, G.J.; Moss, B. !$#journal Virology (1988) 167:524-537 !$#title Analysis of a large cluster of nonessential genes deleted !1from a vaccinia virus terminal transposition mutant. !$#cross-references MUID:89073756; PMID:2849238 !$#accession D33349 !'##molecule_type DNA !'##residues 1-54 ##label KOT !'##cross-references GB:M23701; NID:g335690; PIDN:AAA69590.1; !1PID:g893299 !'##experimental_source transposition mutant 6/2 SUMMARY #length 54 #molecular-weight 6233 #checksum 4363 SEQUENCE /// ENTRY A33652 #type complete TITLE probable keratin 16, type I, pseudogene - human ORGANISM #formal_name Homo sapiens #common_name man DATE 12-Nov-1999 #sequence_revision 12-Nov-1999 #text_change 12-Nov-1999 ACCESSIONS A33652 REFERENCE A33652 !$#authors Rosenberg, M.; RayChaudhury, A.; Shows, T.B.; Le Beau, M.M.; !1Fuchs, E. !$#journal Mol. Cell. Biol. (1988) 8:722-736 !$#title A group of type I keratin genes on human chromosome 17: !1characterization and expression. !$#cross-references MUID:88174714; PMID:2451124 !$#accession A33652 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-473 ##label ROS !'##cross-references GB:M20336; GB:M21772; NID:g186717; GB:M21751; !1NID:g186718; GB:M21752; NID:g186719; GB:M21753; NID:g186720; !1GB:M21754; NID:g186721; GB:M21755; NID:g186722; GB:M21756; !1NID:g186723; GB:M21769; NID:g186724 GENETICS !$#map_position 17 KEYWORDS pseudogene SUMMARY #length 473 #molecular-weight 50912 #checksum 8319 SEQUENCE /// ENTRY S78720 #type complete TITLE TyA protein YER138w-a, truncated pseudogene - yeast (Saccharomyces cerevisiae) delta remnant ORGANISM #formal_name Saccharomyces cerevisiae DATE 05-Nov-1999 #sequence_revision 05-Nov-1999 #text_change 05-Nov-1999 ACCESSIONS S78720 REFERENCE S50428 !$#authors Dietrich, F.S. !$#submission submitted to the EMBL Data Library, December 1994 !$#description Saccharomyces cerevisiae chromosome V cosmids 9871, 8199, !19867, 9495 and lambda clones 6693 and 5898. !$#accession S78720 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-34 ##label DIE !'##cross-references EMBL:U18530; EMBL:U00092; NID:g602367 GENETICS !$#map_position 5L !$#mobile_element delta remnant KEYWORDS pseudogene SUMMARY #length 34 #molecular-weight 3954 #checksum 6911 SEQUENCE /// ENTRY S78704 #type complete TITLE TyA protein YBL107w-a, truncated pseudogene - yeast (Saccharomyces cerevisiae) delta remnant ORGANISM #formal_name Saccharomyces cerevisiae DATE 05-Nov-1999 #sequence_revision 05-Nov-1999 #text_change 05-Nov-1999 ACCESSIONS S78704 REFERENCE S45816 !$#authors Domdey, H.; Gassenhuber, H.; Obermaier, B.; Piravandi, E. !$#submission submitted to the Protein Sequence Database, August 1994 !$#accession S78704 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-34 ##label DOM !'##cross-references EMBL:Z35869; GB:Y13134; NID:g1870093 !'##experimental_source strain S288C GENETICS !$#map_position 2L !$#mobile_element delta remnant KEYWORDS pseudogene SUMMARY #length 34 #molecular-weight 4053 #checksum 6999 SEQUENCE /// ENTRY C26871 #type fragment TITLE hypothetical chl protein - Escherichia coli (fragment) ORGANISM #formal_name Escherichia coli DATE 22-Oct-1999 #sequence_revision 22-Oct-1999 #text_change 22-Oct-1999 ACCESSIONS C26871 REFERENCE A26871 !$#authors Johann, S.; Hinton, S.M. !$#journal J. Bacteriol. (1987) 169:1911-1916 !$#title Cloning and nucleotide sequence of the chlD locus. !$#cross-references MUID:87194564; PMID:3553151 !$#accession C26871 !'##molecule_type DNA !'##residues 1-32 ##label JOH !'##cross-references GB:M16182; NID:g145541; PIDN:AAA83841.1; !1PID:g1128946; GB:L34009; NID:g504497; PIDN:AAB00838.1; !1PID:g504501 !'##experimental_source strain K12 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. SUMMARY #length 32 #checksum 1440 SEQUENCE /// ENTRY D42959 #type fragment TITLE hypothetical protein dapE 3'-region - Escherichia coli (fragment) ORGANISM #formal_name Escherichia coli DATE 22-Oct-1999 #sequence_revision 22-Oct-1999 #text_change 22-Oct-1999 ACCESSIONS D42959; S27000 REFERENCE A42959 !$#authors Bouvier, J.; Richaud, C.; Higgins, W.; Bogler, O.; Stragier, !1P. !$#journal J. Bacteriol. (1992) 174:5265-5271 !$#title Cloning, characterization, and expression of the dapE gene !1of Escherichia coli. !$#cross-references MUID:92355499; PMID:1644752 !$#accession D42959 !'##molecule_type DNA !'##residues 1-31 ##label BOU !'##cross-references EMBL:X57403; NID:g41231; PIDN:CAA40666.1; !1PID:g41235 !'##note sequence extracted from NCBI backbone (NCBIN:110333, !1NCBIP:110337) COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. GENETICS !$#map_position 53 min SUMMARY #length 31 #checksum 8469 SEQUENCE /// ENTRY B34962 #type fragment TITLE hypothetical protein fruA 5'-region - Escherichia coli (fragment) ORGANISM #formal_name Escherichia coli DATE 22-Oct-1999 #sequence_revision 22-Oct-1999 #text_change 22-Oct-1999 ACCESSIONS B34962 REFERENCE A34962 !$#authors Prior, T.I.; Kornberg, H.L. !$#journal J. Gen. Microbiol. (1988) 134:2757-2768 !$#title Nucleotide sequence of fruA, the gene specifying enzyme II !1(fru) of the phosphoenolpyruvate-dependent sugar !1phosphotransferase system in Escherichia coli K12. !$#cross-references MUID:89341690; PMID:3076173 !$#accession B34962 !'##status not compared with conceptual translation !'##molecule_type DNA !'##residues 1-32 ##label PRI !'##cross-references GB:M23196; NID:g340830; PIDN:AAA62623.1; !1PID:g691760 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. SUMMARY #length 32 #checksum 805 SEQUENCE /// ENTRY A33171 #type fragment TITLE hypothetical protein lpxA 3'-region - Escherichia coli (fragment) ORGANISM #formal_name Escherichia coli DATE 22-Oct-1999 #sequence_revision 22-Oct-1999 #text_change 22-Oct-1999 ACCESSIONS A33171 REFERENCE A33171 !$#authors Coleman, J.; Raetz, C.R.H. !$#journal J. Bacteriol. (1988) 170:1268-1274 !$#title First committed step of lipid A biosynthesis in Escherichia !1coli: sequence of the lpxA gene. !$#cross-references MUID:88139188; PMID:3277952 !$#accession A33171 !'##molecule_type DNA !'##residues 1-16 ##label COL !'##cross-references GB:M19334; GB:M18265; GB:M18266; NID:g450760; !1DDBJ:D83536; NID:g1208942 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. SUMMARY #length 16 #checksum 996 SEQUENCE /// ENTRY S52252 #type fragment TITLE hypothetical protein pco 5'-region - Escherichia coli plasmid pRJ1004 (fragment) ORGANISM #formal_name Escherichia coli DATE 22-Oct-1999 #sequence_revision 22-Oct-1999 #text_change 22-Oct-1999 ACCESSIONS S70166; S52252 REFERENCE S70159 !$#authors Brown, N.L.; Barrett, S.R.; Camakaris, J.; Lee, B.T.O.; !1Rouch, D.A. !$#journal Mol. Microbiol. (1995) 17:1153-1166 !$#title Molecular genetics and transport analysis of the !1copper-resistance determinant (pco) from Escherichia coli !1plasmid pRJ1004. !$#cross-references MUID:96130847; PMID:8594334 !$#accession S70166 !'##status nucleic acid sequence not shown; translation not shown !'##molecule_type DNA !'##residues 1-11 ##label BRO !'##cross-references EMBL:X83541; NID:g619126; PIDN:CAA58524.1; !1PID:g619127 !'##note the nucleotide sequence was submitted to the EMBL Data Library, !1January 1995 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. GENETICS !$#genome plasmid pRJ1004 SUMMARY #length 11 #checksum 4961 SEQUENCE /// ENTRY S36250 #type fragment TITLE hypothetical protein 2 trkA 5'-region - Escherichia coli (fragment) ORGANISM #formal_name Escherichia coli DATE 22-Oct-1999 #sequence_revision 22-Oct-1999 #text_change 22-Oct-1999 ACCESSIONS S36250; S21885 REFERENCE S36250 !$#authors Schloesser, A.; Hamann, A.; Bossemeyer, D.; Schneider, E.; !1Bakker, E.P. !$#journal Mol. Microbiol. (1993) 9:533-543 !$#title NAD(+) binding to the Escherichia coli K(+)-uptake protein !1TrkA and sequence similarity between TrkA and domains of a !1family of dehydrogenases suggest a role for NAD(+) in !1bacterial transport. !$#cross-references MUID:94018648; PMID:8412700 !$#accession S36250 !'##molecule_type DNA !'##residues 1-42 ##label SCH !'##cross-references EMBL:X52114; NID:g43134; PIDN:CAA36357.1; !1PID:g43135 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. SUMMARY #length 42 #checksum 148 SEQUENCE /// ENTRY S00695 #type fragment TITLE hypothetical protein II - Escherichia coli (fragment) ORGANISM #formal_name Escherichia coli DATE 22-Oct-1999 #sequence_revision 22-Oct-1999 #text_change 22-Oct-1999 ACCESSIONS S00695 REFERENCE S00693 !$#authors Nakamura, H.; Murakami, H.; Yamato, I.; Anraku, Y. !$#journal Mol. Gen. Genet. (1988) 212:1-5 !$#title Nucleotide sequence of the cybB gene encoding cytochrome !1b561 in Escherichia coli K12. !$#cross-references MUID:88232416; PMID:2836696 !$#accession S00695 !'##molecule_type DNA !'##residues 1-73 ##label NAK !'##cross-references EMBL:X07569; NID:g41190; PIDN:CAA30456.1; !1PID:g41193 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. SUMMARY #length 73 #checksum 7449 SEQUENCE /// ENTRY PS0038 #type fragment TITLE hypothetical protein 63 fucR 3'-region - Escherichia coli (fragment) ORGANISM #formal_name Escherichia coli DATE 22-Oct-1999 #sequence_revision 22-Oct-1999 #text_change 22-Oct-1999 ACCESSIONS PS0038 REFERENCE S04702 !$#authors Lu, Z.; Lin, E.C.C. !$#journal Nucleic Acids Res. (1989) 17:4883-4884 !$#title The nucleotide sequence of Escherichia coli genes for !1L-fucose dissimilation. !$#cross-references MUID:89315234; PMID:2664711 !$#accession PS0038 !'##molecule_type DNA !'##residues 1-63 ##label LUZ !'##cross-references GB:X15025; NID:g41501; PIDN:CAA33131.1; PID:g41509 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. GENETICS !$#map_position 60 min SUMMARY #length 63 #checksum 9728 SEQUENCE /// ENTRY T11818 #type complete TITLE hypothetical Pdlec1 frame shift mutant - kidney bean ORGANISM #formal_name Phaseolus vulgaris #common_name kidney bean DATE 22-Oct-1999 #sequence_revision 22-Oct-1999 #text_change 22-Oct-1999 ACCESSIONS T11818 REFERENCE A25701 !$#authors Voelker, T.A.; Staswick, P.; Chrispeels, M.J. !$#journal EMBO J. (1986) 5:3075-3082 !$#title Molecular analysis of two phytohemagglutinin genes and their !1expression in Phaseolus vulgaris cv. Pinto, a !1lectin-deficient cultivar of the bean. !$#accession T11818 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-52 ##label VOE !'##cross-references EMBL:X04660; NID:g21020; PIDN:CAA28363.1; !1PID:g21021 SUMMARY #length 52 #molecular-weight 5290 #checksum 7085 SEQUENCE /// ENTRY C40499 #type fragment TITLE defensin alpha-3 precursor (mistranslated) - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 15-Oct-1999 #sequence_revision 15-Oct-1999 #text_change 15-Oct-1999 ACCESSIONS C40499 REFERENCE A40499 !$#authors Daher, K.A.; Lehrer, R.I.; Ganz, T.; Kronenberg, M. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1988) 85:7327-7331 !$#title Isolation and characterization of human defensin cDNA !1clones. !$#cross-references MUID:89017191; PMID:3174637 !$#accession C40499 !'##molecule_type mRNA !'##residues 1-65 ##label DAH !'##cross-references GB:M23281; NID:g181530; PIDN:AAA35753.1; !1PID:g553252 !'##note the sequence in GenBank entry HUMDEF3A, release 111.0, is !1translated in an incorrect reading frame COMMENT For translation in the correct reading frame, see !1PIR:B40499. GENETICS !$#gene GDB:DEFA3; DEF3; HNP-3 !'##cross-references GDB:136416 SUMMARY #length 65 #checksum 177 SEQUENCE /// ENTRY S40857 #type complete TITLE hypothetical protein o167 cpxA-pfkA intergenic region - Escherichia coli ORGANISM #formal_name Escherichia coli DATE 15-Oct-1999 #sequence_revision 15-Oct-1999 #text_change 15-Oct-1999 ACCESSIONS S40857 REFERENCE S40802 !$#authors Plunkett III, G.; Burland, V.; Daniels, D.L.; Blattner, F.R. !$#journal Nucleic Acids Res. (1993) 21:3391-3398 !$#title Analysis of the Escherichia coli genome. III. DNA sequence !1of the region from 87.2 to 89.2 minutes. !$#cross-references MUID:93347969; PMID:8346018 !$#accession S40857 !'##status nucleic acid sequence not shown; translation not shown !'##molecule_type DNA !'##residues 1-167 ##label PLU !'##cross-references EMBL:L19201; NID:g304961; PIDN:AAB03046.1; !1PID:g305017 !'##note the nucleotide sequence was submitted to the EMBL Data Library, !1October 1993 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. !1For reinterpreted translation products see PIR:D65197 and !1PIR:E65197. SUMMARY #length 167 #molecular-weight 19096 #checksum 4673 SEQUENCE /// ENTRY S19015 #type complete TITLE hypothetical protein 11 ruvC-yebC intergenic region - Escherichia coli ORGANISM #formal_name Escherichia coli DATE 15-Oct-1999 #sequence_revision 15-Oct-1999 #text_change 15-Oct-1999 ACCESSIONS S19015 REFERENCE S19013 !$#authors Sharples, G.J.; Lloyd, R.G. !$#journal J. Bacteriol. (1991) 173:7711-7715 !$#title Resolution of Holliday junctions in Escherichia coli: !1identification of the ruvC gene product as a 19-kilodalton !1protein. !$#cross-references MUID:92041688; PMID:1657895 !$#accession S19015 !'##molecule_type DNA !'##residues 1-11 ##label SHA !'##cross-references EMBL:X59551; NID:g42172; PIDN:CAA42127.1; !1PID:g42174 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. SUMMARY #length 11 #molecular-weight 1215 #checksum 4827 SEQUENCE /// ENTRY S00843 #type complete TITLE hypothetical protein ksgA 5'-region - Escherichia coli ORGANISM #formal_name Escherichia coli DATE 15-Oct-1999 #sequence_revision 15-Oct-1999 #text_change 15-Oct-1999 ACCESSIONS S00843 REFERENCE S00843 !$#authors van Gemen, B.; Koets, H.J.; Plooy, C.A.M.; Bodlaender, J.; !1van Knippenberg, P.H. !$#journal Biochimie (1987) 69:841-848 !$#title Characterization of the ksgA gene of Escherichia coli !1determining kasugamycin sensitivity. !$#cross-references MUID:88107880; PMID:3122846 !$#accession S00843 !'##molecule_type DNA !'##residues 1-14 ##label VAN !'##cross-references EMBL:X06536; NID:g41884; PIDN:CAA29785.1; !1PID:g41885 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. SUMMARY #length 14 #molecular-weight 1571 #checksum 8264 SEQUENCE /// ENTRY QQEC31 #type fragment TITLE hypothetical protein C-96 rspA 3'-region - Escherichia coli (fragment) ORGANISM #formal_name Escherichia coli DATE 29-Sep-1999 #sequence_revision 29-Sep-1999 #text_change 29-Sep-1999 ACCESSIONS A04448 REFERENCE A04448 !$#authors Schnier, J.; Isono, K. !$#journal Nucleic Acids Res. (1982) 10:1857-1865 !$#title The DNA sequence of the gene rspA of Escherichia coli coding !1for ribosomal protein S1. !$#cross-references MUID:82196866; PMID:6281725 !$#accession A04448 !'##molecule_type DNA !'##residues 1-96 ##label SCH !'##cross-references GB:V00352; GB:J01681; GB:J01682; NID:g42899 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. GENETICS !$#map_position 20 min SUMMARY #length 96 #checksum 7956 SEQUENCE /// ENTRY QQECW2 #type fragment TITLE hypothetical protein A-73 trpR 5'-region - Escherichia coli (fragment) ORGANISM #formal_name Escherichia coli DATE 29-Sep-1999 #sequence_revision 29-Sep-1999 #text_change 29-Sep-1999 ACCESSIONS C93698; B93867; A04436 REFERENCE A93698 !$#authors Singleton, C.K.; Roeder, W.D.; Bogosian, G.; Somerville, !1R.L.; Weith, H.L. !$#journal Nucleic Acids Res. (1980) 8:1551-1560 !$#title DNA sequence of the Escherichia coli trpR gene and !1prediction of the amino acid sequence of Trp repressor. !$#cross-references MUID:81053831; PMID:7001368 !$#accession C93698 !'##molecule_type DNA !'##residues 1-73 ##label SIN !'##cross-references GB:J01715; GB:V00369; NID:g148059 REFERENCE A93867 !$#authors Gunsalus, R.P.; Yanofsky, C. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1980) 77:7117-7121 !$#title Nucleotide sequence and expression of Escherichia coli trpR, !1the structural gene for the trp aporepressor. !$#cross-references MUID:81175101; PMID:7012834 !$#accession B93867 !'##molecule_type DNA !'##residues 1-33 ##label GUN !'##cross-references GB:J01715; GB:V00369; NID:g148059 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. GENETICS !$#map_position 100 min !$#start_codon GTG SUMMARY #length 73 #checksum 7611 SEQUENCE /// ENTRY A45689 #type fragments TITLE retrovirus-related pol polyprotein pseudogene - human (fragments) ORGANISM #formal_name Homo sapiens #common_name man DATE 10-Sep-1999 #sequence_revision 10-Sep-1999 #text_change 10-Sep-1999 ACCESSIONS A45689; B45689; C45689 REFERENCE A45689 !$#authors Wilkinson, D.A.; Goodchild, N.L.; Saxton, T.M.; Wood, S.; !1Mager, D.L. !$#journal J. Virol. (1993) 67:2981-2989 !$#title Evidence for a functional subclass of the RTVL-H family of !1human endogenous retrovirus-like sequences. !$#cross-references MUID:93267742; PMID:8388483 !$#accession A45689 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-80 ##label WIL1 !'##cross-references GB:S61069; NID:g300476; PIDN:AAB26732.1; !1PID:g300477 !'##experimental_source endogenous retroviral element RTVL-Hp3 !'##note sequence extracted from NCBI backbone (NCBIN:132353, !1NCBIN:132355, NCBIP:132356) !$#accession B45689 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 81-179 ##label WIL2 !'##cross-references GB:S61068; NID:g300475; PIDN:AAB26733.1; !1PID:g300478 !'##experimental_source endogenous retroviral element RTVL-Hp3 !'##note sequence extracted from NCBI backbone (NCBIP:132358); this !1translation is described but not annotated in GenBank entry !1S61068S2, release 111.0 !$#accession C45689 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 180-399 ##label WIL3 !'##cross-references GB:S61070; NID:g300481; PIDN:AAB26734.1; !1PID:g300482 !'##experimental_source endogenous retroviral element RTVL-Hp1 !'##note sequence extracted from NCBI backbone (NCBIN:132359, !1NCBIP:132360) COMMENT This sequence is not thought to be transcribed or !1translated. KEYWORDS pseudogene FEATURE !$139 #region plus-two translational frameshift SUMMARY #length 399 #checksum 6142 SEQUENCE /// ENTRY IMBP8 #type complete TITLE hypothetical immunity region protein 8 - Bacillus phage phi-105 ORGANISM #formal_name Bacillus phage phi-105 #note host Bacillus subtilis DATE 20-Aug-1999 #sequence_revision 20-Aug-1999 #text_change 20-Aug-1999 ACCESSIONS G24521 REFERENCE A91535 !$#authors Cully, D.F.; Garro, A.J. !$#journal Gene (1985) 38:153-164 !$#title Nucleotide sequence of the immunity region of Bacillus !1subtilis bacteriophage phi-105: identification of the !1repressor gene and its mRNA and protein products. !$#cross-references MUID:86056972; PMID:3934047 !$#accession G24521 !'##molecule_type DNA !'##residues 1-44 ##label CUL !'##cross-references GB:M11920; NID:g215477 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. SUMMARY #length 44 #molecular-weight 5574 #checksum 5280 SEQUENCE /// ENTRY IMBP9 #type complete TITLE hypothetical immunity region protein 9 - Bacillus phage phi-105 ORGANISM #formal_name Bacillus phage phi-105 #note host Bacillus subtilis DATE 20-Aug-1999 #sequence_revision 20-Aug-1999 #text_change 20-Aug-1999 ACCESSIONS H24521 REFERENCE A91535 !$#authors Cully, D.F.; Garro, A.J. !$#journal Gene (1985) 38:153-164 !$#title Nucleotide sequence of the immunity region of Bacillus !1subtilis bacteriophage phi-105: identification of the !1repressor gene and its mRNA and protein products. !$#cross-references MUID:86056972; PMID:3934047 !$#accession H24521 !'##molecule_type DNA !'##residues 1-49 ##label CUL !'##cross-references GB:M11920; NID:g215477 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. SUMMARY #length 49 #molecular-weight 5863 #checksum 2544 SEQUENCE /// ENTRY IMBP10 #type complete TITLE hypothetical immunity region protein 10 - Bacillus phage phi-105 ORGANISM #formal_name Bacillus phage phi-105 #note host Bacillus subtilis DATE 20-Aug-1999 #sequence_revision 20-Aug-1999 #text_change 20-Aug-1999 ACCESSIONS I24521 REFERENCE A91535 !$#authors Cully, D.F.; Garro, A.J. !$#journal Gene (1985) 38:153-164 !$#title Nucleotide sequence of the immunity region of Bacillus !1subtilis bacteriophage phi-105: identification of the !1repressor gene and its mRNA and protein products. !$#cross-references MUID:86056972; PMID:3934047 !$#accession I24521 !'##molecule_type DNA !'##residues 1-44 ##label CUL !'##cross-references GB:M11920; NID:g215477; PIDN:AAA88400.1; !1PID:g1196718 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. SUMMARY #length 44 #molecular-weight 5255 #checksum 5581 SEQUENCE /// ENTRY IMBP11 #type complete TITLE hypothetical immunity region protein 11 - Bacillus phage phi-105 ORGANISM #formal_name Bacillus phage phi-105 #note host Bacillus subtilis DATE 20-Aug-1999 #sequence_revision 20-Aug-1999 #text_change 20-Aug-1999 ACCESSIONS A27234 REFERENCE A91535 !$#authors Cully, D.F.; Garro, A.J. !$#journal Gene (1985) 38:153-164 !$#title Nucleotide sequence of the immunity region of Bacillus !1subtilis bacteriophage phi-105: identification of the !1repressor gene and its mRNA and protein products. !$#cross-references MUID:86056972; PMID:3934047 !$#accession A27234 !'##molecule_type DNA !'##residues 1-57 ##label CUL !'##cross-references GB:M11920; NID:g215477; PIDN:AAA88398.1; !1PID:g1196716 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. SUMMARY #length 57 #molecular-weight 6636 #checksum 7854 SEQUENCE /// ENTRY IMBP12 #type complete TITLE hypothetical immunity region protein 12 - Bacillus phage phi-105 ORGANISM #formal_name Bacillus phage phi-105 #note host Bacillus subtilis DATE 20-Aug-1999 #sequence_revision 20-Aug-1999 #text_change 20-Aug-1999 ACCESSIONS B27234 REFERENCE A91535 !$#authors Cully, D.F.; Garro, A.J. !$#journal Gene (1985) 38:153-164 !$#title Nucleotide sequence of the immunity region of Bacillus !1subtilis bacteriophage phi-105: identification of the !1repressor gene and its mRNA and protein products. !$#cross-references MUID:86056972; PMID:3934047 !$#accession B27234 !'##molecule_type DNA !'##residues 1-87 ##label CUL !'##cross-references GB:M11920; NID:g215477; PIDN:AAA88397.1; !1PID:g1196715 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. SUMMARY #length 87 #molecular-weight 9969 #checksum 3521 SEQUENCE /// ENTRY IMBP13 #type complete TITLE hypothetical immunity region protein 13 - Bacillus phage phi-105 ORGANISM #formal_name Bacillus phage phi-105 #note host Bacillus subtilis DATE 20-Aug-1999 #sequence_revision 20-Aug-1999 #text_change 20-Aug-1999 ACCESSIONS C27234 REFERENCE A91535 !$#authors Cully, D.F.; Garro, A.J. !$#journal Gene (1985) 38:153-164 !$#title Nucleotide sequence of the immunity region of Bacillus !1subtilis bacteriophage phi-105: identification of the !1repressor gene and its mRNA and protein products. !$#cross-references MUID:86056972; PMID:3934047 !$#accession C27234 !'##molecule_type DNA !'##residues 1-50 ##label CUL !'##cross-references GB:M11920; NID:g215477 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. SUMMARY #length 50 #molecular-weight 5515 #checksum 8662 SEQUENCE /// ENTRY IMBP14 #type complete TITLE hypothetical immunity region protein 14 - Bacillus phage phi-105 ORGANISM #formal_name Bacillus phage phi-105 #note host Bacillus subtilis DATE 20-Aug-1999 #sequence_revision 20-Aug-1999 #text_change 20-Aug-1999 ACCESSIONS D27234 REFERENCE A91535 !$#authors Cully, D.F.; Garro, A.J. !$#journal Gene (1985) 38:153-164 !$#title Nucleotide sequence of the immunity region of Bacillus !1subtilis bacteriophage phi-105: identification of the !1repressor gene and its mRNA and protein products. !$#cross-references MUID:86056972; PMID:3934047 !$#accession D27234 !'##molecule_type DNA !'##residues 1-65 ##label CUL !'##cross-references GB:M11920; NID:g215477; PIDN:AAA88395.1; !1PID:g1196713 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. SUMMARY #length 65 #molecular-weight 7332 #checksum 70 SEQUENCE /// ENTRY S15594 #type complete TITLE orf 1 rara 5'-region - human ORGANISM #formal_name Homo sapiens #common_name man DATE 04-Jun-1999 #sequence_revision 04-Jun-1999 #text_change 28-Jun-1999 ACCESSIONS S15594 REFERENCE S15594 !$#authors Brand, N.J.; Petkovich, M.; Chambon, P. !$#journal Nucleic Acids Res. (1990) 18:6799-6806 !$#title Characterization of a functional promoter for the human !1retinoic acid receptor-alpha (hRAR-alpha). !$#cross-references MUID:91088249; PMID:2175878 !$#accession S15594 !'##molecule_type DNA !'##residues 1-9 ##label BRA !'##cross-references EMBL:X56057; NID:g35875 !'##note this ORF from Fig. 2 is not annotated in GenBank entry HSRARA1, !1release 111.0 COMMENT This sequence is not thought to be translated. GENETICS !$#gene GDB:RARA !'##cross-references GDB:120337; OMIM:180240 !$#map_position 17q12-17q12 SUMMARY #length 9 #molecular-weight 897 #checksum 3353 SEQUENCE /// ENTRY JN0014 #type fragment TITLE GABA(A) receptor alpha-1 chain /glycine receptor alpha-1 chain engineered fusion protein - synthetic (fragment) ORGANISM #formal_name synthetic #note Rattus norvegicus (Norway rat) gene 5' region with engineered signal sequence derived from GABA(A) receptor DATE 31-Mar-1990 #sequence_revision 30-Apr-1998 #text_change 13-Aug-1999 ACCESSIONS JN0014 REFERENCE JN0014 !$#authors Sontheimer, H.; Becker, C.M.; Pritchett, D.B.; Schofield, !1P.R.; Grenningloh, G.; Kettenmann, H.; Betz, H.; Seeburg, !1P.H. !$#journal Neuron (1989) 2:1491-1497 !$#title Functional chloride channels by mammalian cell expression of !1rat glycine receptor subunit. !$#cross-references MUID:90180468; PMID:2483325 !$#accession JN0014 !'##molecule_type mRNA !'##residues 1-28 ##label SON COMMENT See PIR:S20662. FEATURE !$1-20 #region GABA(A) receptor alpha-1 chain-derived\ !$21-28 #region glycine receptor alpha-1 chain-derived SUMMARY #length 28 #checksum 6 SEQUENCE /// ENTRY A28516 #type complete TITLE probable cytochrome P450 2C6 pseudogene - rat ALTERNATE_NAMES cytochrome P450 PB-1(ps) ORGANISM #formal_name Rattus norvegicus #common_name Norway rat DATE 15-Dec-1988 #sequence_revision 17-Nov-1995 #text_change 13-Aug-1999 ACCESSIONS A28516 REFERENCE A28516 !$#authors Kimura, H.; Yoshioka, H.; Sogawa, K.; Sakai, Y.; !1Fujii-Kuriyama, Y. !$#journal J. Biol. Chem. (1988) 263:701-707 !$#title Complementary DNA cloning of cytochrome P-450s related to !1P-450(M-1) from the complementary DNA library of female rat !1livers. Predicted primary structures for P-450f, PB-1, and !1PB-1-related protein with a bizarre replacement block and !1their mode of transcriptional expression. !$#cross-references MUID:88087187; PMID:3335521 !$#accession A28516 !'##status conceptual translation of pseudogene !'##molecule_type mRNA !'##residues 1-445 ##label KIM !'##cross-references EMBL:M18336; GB:J03509; GB:M18774; NID:g203781 COMMENT The authors suggest this sequence may have resulted from !1either recombinant gene conversion or alternative splicing !1of a cryptic exon. It lacks a P450 heme binding region. KEYWORDS pseudogene SUMMARY #length 445 #molecular-weight 51117 #checksum 2882 SEQUENCE /// ENTRY QQHUPL #type complete TITLE hypothetical protein B-120 - human ORGANISM #formal_name Homo sapiens #common_name man DATE 17-Dec-1982 #sequence_revision 17-Aug-1995 #text_change 13-Aug-1999 ACCESSIONS A04523 REFERENCE A00649 !$#authors Watson, R.; Oskarsson, M.; Vande Woude, G.F. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1982) 79:4078-4082 !$#title Human DNA sequence homologous to the transforming gene (mos) !1of Moloney murine sarcoma virus. !$#cross-references MUID:82275068; PMID:6287464 !$#accession A04523 !'##molecule_type DNA !'##residues 1-120 ##label WAT !'##experimental_source placenta COMMENT This is the conceptual translation of an open reading frame !1beginning 104 nucleotide bases before the initiator codon of !1the MOS gene (see PIR:A00649). There is no evidence that !1this protein sequence is expressed. GENETICS !$#map_position 8q11 SUMMARY #length 120 #molecular-weight 13271 #checksum 6181 SEQUENCE /// ENTRY S15595 #type complete TITLE orf 2 rara 5'-region - human ORGANISM #formal_name Homo sapiens #common_name man DATE 04-Jun-1999 #sequence_revision 04-Jun-1999 #text_change 28-Jun-1999 ACCESSIONS S15595 REFERENCE S15594 !$#authors Brand, N.J.; Petkovich, M.; Chambon, P. !$#journal Nucleic Acids Res. (1990) 18:6799-6806 !$#title Characterization of a functional promoter for the human !1retinoic acid receptor-alpha (hRAR-alpha). !$#cross-references MUID:91088249; PMID:2175878 !$#accession S15595 !'##molecule_type DNA !'##residues 1-9 ##label BRA !'##cross-references EMBL:X56057; NID:g35875 !'##note this ORF from Fig. 2 is not annotated in GenBank entry HSRARA1, !1release 111.0 COMMENT This sequence is not thought to be translated. GENETICS !$#gene GDB:RARA !'##cross-references GDB:120337; OMIM:180240 !$#map_position 17q12-17q12 SUMMARY #length 9 #molecular-weight 903 #checksum 3464 SEQUENCE /// ENTRY EBRTMS #type complete TITLE IgE-binding protein - rodent (hybridoma) ORGANISM #formal_name Mus musculus x Rattus norvegicus #common_name house mouse x Norway rat #note this hybridoma was generated by fusion of rat lymphocytes with cells of the AKR mouse thyoma BW5147 DATE 13-Aug-1986 #sequence_revision 24-May-1996 #text_change 13-Aug-1999 ACCESSIONS A01858 REFERENCE A01858 !$#authors Martens, C.L.; Huff, T.F.; Jardieu, P.; Trounstine, M.L.; !1Coffman, R.L.; Ishizaka, K.; Moore, K.W. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1985) 82:2460-2464 !$#title cDNA clones encoding IgE-binding factors from a rat-mouse !1T-cell hybridoma. !$#cross-references MUID:85190515; PMID:3873067 !$#accession A01858 !'##molecule_type mRNA !'##residues 1-557 ##label MAR !'##cross-references GB:M10062; GB:M36709; GB:M36710; NID:g192166; !1PIDN:AAA37291.1; PID:g192167 !'##note rat IgE appears to bind with the protein as it is expressed and !1produced in yeast REFERENCE A30617 !$#authors Toh, H.; Ono, M.; Miyata, T. !$#journal Nature (1985) 318:388-389 !$#title Retroviral gag and DNA endonuclease coding sequences in !1IgE-binding factor gene. !$#cross-references MUID:86065463; PMID:3877875 !$#contents annotation; homologies COMMENT The amino end is highly homologous to retrovirus-related gag !1polyprotein (see PIR:FOMSIA) and the carboxyl end is highly !1homologous to retrovirus-related pol polyprotein (see !1PIR:GNMSIP) of mouse intracisternal A-particle. There is no !1evidence for other genetic elements and this sequence !1probably represents a fusion of these two retroviral genes. KEYWORDS fusion protein; glycoprotein; hybridoma FEATURE !$1-30 #domain signal sequence #status predicted #label SIG\ !$31-557 #product IgE-binding protein #status predicted #label !8MAT\ !$1-411 #region retrovirus-related gag polyprotein\ !$431-530 #region retrovirus-related pol polyprotein\ !$147,253 #binding_site carbohydrate (Asn) (covalent) #status !8predicted SUMMARY #length 557 #molecular-weight 62747 #checksum 5793 SEQUENCE /// ENTRY TVHURE #type complete TITLE transforming protein RFP/protein-tyrosine kinase RET mutant fusion protein - human ALTERNATE_NAMES ret oncogene protein CONTAINS protein-tyrosine kinase (EC 2.7.1.112) ret ORGANISM #formal_name Homo sapiens #common_name man DATE 31-Mar-1989 #sequence_revision 10-Sep-1997 #text_change 13-Aug-1999 ACCESSIONS A27203 REFERENCE A27203 !$#authors Takahashi, M.; Cooper, G.M. !$#journal Mol. Cell. Biol. (1987) 7:1378-1385 !$#title ret transforming gene encodes a fusion protein homologous to !1tyrosine kinases. !$#cross-references MUID:87257826; PMID:3037315 !$#accession A27203 !'##molecule_type mRNA !'##residues 'QAGA',1-801 ##label TAK !'##cross-references GB:M16029; NID:g340025 !'##note codons preceding the probable start codon were translated COMMENT The ret oncogene is the chimeric product of a translocation !1mutation between transforming protein rfp (see PIR:A28101) !1and protein-tyrosine kinase ret (see PIR:S05582). GENETICS !$#gene RFP/RET KEYWORDS ATP; fusion protein; oncogene; phosphotransferase; !1transforming protein; tyrosine-specific protein kinase; zinc !1finger FEATURE !$1-315 #region transforming protein rfp\ !$316-792 #region protein-tyrosine kinase ret\ !$459-467 #region protein kinase ATP-binding motif\ !$487 #active_site Lys #status predicted SUMMARY #length 801 #molecular-weight 91096 #checksum 6346 SEQUENCE /// ENTRY S15596 #type complete TITLE orf 3 rara 5'-region - human ORGANISM #formal_name Homo sapiens #common_name man DATE 04-Jun-1999 #sequence_revision 04-Jun-1999 #text_change 28-Jun-1999 ACCESSIONS S15596 REFERENCE S15594 !$#authors Brand, N.J.; Petkovich, M.; Chambon, P. !$#journal Nucleic Acids Res. (1990) 18:6799-6806 !$#title Characterization of a functional promoter for the human !1retinoic acid receptor-alpha (hRAR-alpha). !$#cross-references MUID:91088249; PMID:2175878 !$#accession S15596 !'##molecule_type DNA !'##residues 1-6 ##label BRA !'##cross-references EMBL:X56058; NID:g35876 !'##note this ORF from Fig. 2 is not annotated in GenBank entry HSRARA2, !1release 111.0 COMMENT This sequence is not thought to be translated. GENETICS !$#gene GDB:RARA !'##cross-references GDB:120337; OMIM:180240 !$#map_position 17q12-17q12 SUMMARY #length 6 #molecular-weight 577 #checksum 1608 SEQUENCE /// ENTRY S57933 #type complete TITLE AF-4 mutant fusion protein FelC - human ORGANISM #formal_name Homo sapiens #common_name man DATE 13-Jan-1996 #sequence_revision 24-Oct-1996 #text_change 13-Aug-1999 ACCESSIONS S57933 REFERENCE S57933 !$#authors Marschalek, R.; Nilson, I.; Brecevic, L.; Liehr, T.; !1Loechner, K.; Siegler, G.; Greil, J.; Beck, J.D.; Gebhart, !1E.; Fey, G.H. !$#submission submitted to the EMBL Data Library, December 1994 !$#description FelC, a novel transcript of the AF-4 gene, is elevated in !1acute lymphoblastic cells carrying a t(4;11) translocation. !$#accession S57933 !'##molecule_type DNA !'##residues 1-389 ##label MAR !'##cross-references EMBL:X83606; NID:g897755; PIDN:CAA58585.1; !1PID:g897756 COMMENT This sequence is the chimeric product of a translocation !1mutation. It does appear to be transcribed. GENETICS !$#gene MLLT2/unknown !$#map_position 4q21-4q21/11 KEYWORDS fusion protein FEATURE !$1-346 #region AF-4 protein\ !$347-389 #region unidentified locus SUMMARY #length 389 #molecular-weight 42812 #checksum 9191 SEQUENCE /// ENTRY S15597 #type complete TITLE orf 4 rara 5'-region - human ORGANISM #formal_name Homo sapiens #common_name man DATE 04-Jun-1999 #sequence_revision 04-Jun-1999 #text_change 28-Jun-1999 ACCESSIONS S15597 REFERENCE S15594 !$#authors Brand, N.J.; Petkovich, M.; Chambon, P. !$#journal Nucleic Acids Res. (1990) 18:6799-6806 !$#title Characterization of a functional promoter for the human !1retinoic acid receptor-alpha (hRAR-alpha). !$#cross-references MUID:91088249; PMID:2175878 !$#accession S15597 !'##molecule_type DNA !'##residues 1-7 ##label BRA !'##cross-references EMBL:X56058; NID:g35876 !'##note this ORF from Fig. 2 is not annotated in GenBank entry HSRARA2, !1release 111.0 COMMENT This sequence is not thought to be translated. GENETICS !$#gene GDB:RARA !'##cross-references GDB:120337; OMIM:180240 !$#map_position 17q12-17q12 SUMMARY #length 7 #molecular-weight 715 #checksum 2240 SEQUENCE /// ENTRY I54081 #type fragment TITLE retinoic acid receptor alpha, exon 3 (mistranslated) - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 04-Jun-1999 #sequence_revision 04-Jun-1999 #text_change 28-Jun-1999 ACCESSIONS I54081 REFERENCE I54081 !$#authors Dong, S.; Geng, J.P.; Tong, J.H.; Wu, Y.; Cai, J.R.; Sun, !1G.L.; Chen, S.R.; Wang, Z.Y.; Larsen, C.J.; Berger, R. !$#journal Genes Chromosomes Cancer (1993) 6:133-139 !$#title Breakpoint clusters of the PML gene in acute promyelocytic !1leukemia: primary structure of the reciprocal products of !1the PML-RARA gene in a patient with t(15;17). !$#cross-references MUID:93222087; PMID:7682097 !$#accession I54081 !'##status translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-11 ##label DON !'##cross-references GB:S57794; NID:g299073; PIDN:AAD13888.1; !1PID:g4261588 !'##note the translation is from an incorrect reading frame GENETICS !$#gene GDB:RARA !'##cross-references GDB:120337; OMIM:180240 !$#map_position 17q12-17q12 SUMMARY #length 11 #checksum 5077 SEQUENCE /// ENTRY A61181 #type complete TITLE homeotic protein HOX11-derived mutant fusion protein - human ORGANISM #formal_name Homo sapiens #common_name man DATE 10-Mar-1994 #sequence_revision 09-May-1996 #text_change 13-Aug-1999 ACCESSIONS A61181 REFERENCE A61181 !$#authors Dube, I.D.; Kamel-Reid, S.; Yuan, C.C.; Lu, M.; Wu, X.; !1Corpus, G.; Raimondi, S.C.; Crist, W.M.; Carroll, A.J.; !1Minowada, J.; Baker, J.B. !$#journal Blood (1991) 78:2996-3003 !$#title A novel human homeobox gene lies at the chromosome 10 !1breakpoint in lymphoid neoplasias with chromosomal !1translocation t(10;14). !$#cross-references MUID:92063028; PMID:1683261 !$#accession A61181 !'##status not compared with conceptual translation !'##molecule_type mRNA !'##residues 1-405 ##label DUB !'##cross-references GB:X16734; NID:g525225 GENETICS !$#gene HOX11/unknown !$#map_position 10q24/unknown KEYWORDS homeobox; fusion protein SUMMARY #length 405 #molecular-weight 43005 #checksum 9805 SEQUENCE /// ENTRY S34856 #type complete TITLE coat protein mutant - tobacco mosaic virus ORGANISM #formal_name tobacco mosaic virus, TMV DATE 04-Jun-1999 #sequence_revision 04-Jun-1999 #text_change 28-Jun-1999 ACCESSIONS S34856; S34857; S34858; S34859 REFERENCE S34856 !$#authors Kuhlmann, U.; Sarkar, S.; Rohde, W. !$#journal Nucleic Acids Res. (1993) 21:3325 !$#title Capsid protein gene sequences of four tobacco mosaic virus !1strains defective for virus assembly. !$#cross-references MUID:93341948; PMID:8341610 !$#accession S34856 !'##molecule_type mRNA !'##residues 1-159 ##label KUH1 !'##cross-references EMBL:X70882; NID:g313829; PIDN:CAA50227.1; !1PID:g313830 !$#accession S34857 !'##molecule_type mRNA !'##residues 1-103,'T',105-137,'R',139-159 ##label KUH2 !'##cross-references EMBL:X70883; NID:g313823; PIDN:CAA50228.1; !1PID:g313824 !$#accession S34858 !'##molecule_type mRNA !'##residues 1-78,'S',80-103,'T',105-137,'R',139-148,'Y',150-159 ##label !1KUH3 !'##cross-references EMBL:X70884; NID:g313827; PIDN:CAA50229.1; !1PID:g313828 !$#accession S34859 !'##molecule_type mRNA !'##residues 1-10,'S',12-13,'F',15-72 ##label KUH4 !'##cross-references EMBL:X70885; NID:g313825; PIDN:CAA50230.1; !1PID:g313826 COMMENT These sequences are from mutagenized strains. SUMMARY #length 159 #molecular-weight 17652 #checksum 6104 SEQUENCE /// ENTRY JX0315 #type fragment TITLE aminotransferase chimera DY18 - synthetic (fragment) ORGANISM #formal_name synthetic DATE 28-May-1999 #sequence_revision 28-May-1999 #text_change 28-May-1999 ACCESSIONS JX0315 REFERENCE JX0315 !$#authors Miyazawa, K.; Kawaguchi, S.; Okamoto, A.; Kato, R.; Ogawa, !1T.; Kuramitsu, S. !$#journal J. Biochem. (1994) 115:568-577 !$#title Construction of aminotransferase chimeras and analysis of !1their substrate specificity. !$#cross-references MUID:94334304; PMID:8056774 !$#accession JX0315 !'##molecule_type DNA !'##residues 1-12 ##label MIY COMMENT This enzyme is a chimeric enzyme of Escherichia coli !1aspartate aminotransferase (EC 2.6.1.1) and aromatic amino !1acid aminotransferase (EC 2.6.1.57). COMMENT The parental enzymes catalyze the reversible amino group !1transfer reaction between L-aspartate and L-glutamate, !1respectively. KEYWORDS aminotransferase SUMMARY #length 12 #checksum 5931 SEQUENCE /// ENTRY PC2122 #type fragment TITLE aminotransferase chimera DY237 - synthetic (fragment) ORGANISM #formal_name synthetic DATE 28-May-1999 #sequence_revision 28-May-1999 #text_change 28-May-1999 ACCESSIONS PC2122 REFERENCE JX0315 !$#authors Miyazawa, K.; Kawaguchi, S.; Okamoto, A.; Kato, R.; Ogawa, !1T.; Kuramitsu, S. !$#journal J. Biochem. (1994) 115:568-577 !$#title Construction of aminotransferase chimeras and analysis of !1their substrate specificity. !$#cross-references MUID:94334304; PMID:8056774 !$#accession PC2122 !'##molecule_type DNA !'##residues 1-12 ##label MIY COMMENT This is a chimeric enzyme of Escherichia coli aspartate !1aminotransferase (EC 2.6.1.1) and aromatic amino acid !1aminotransferase (EC 2.6.1.57). COMMENT The parental enzymes catalyze the reversible amino group !1transfer reaction between L-aspartate and L-glutamate, !1respectively. KEYWORDS aminotransferase SUMMARY #length 12 #checksum 5645 SEQUENCE /// ENTRY PC2124 #type fragment TITLE aminotransferase chimera DY376 - synthetic (fragment) ORGANISM #formal_name synthetic DATE 28-May-1999 #sequence_revision 28-May-1999 #text_change 28-May-1999 ACCESSIONS PC2124 REFERENCE JX0315 !$#authors Miyazawa, K.; Kawaguchi, S.; Okamoto, A.; Kato, R.; Ogawa, !1T.; Kuramitsu, S. !$#journal J. Biochem. (1994) 115:568-577 !$#title Construction of aminotransferase chimeras and analysis of !1their substrate specificity. !$#cross-references MUID:94334304; PMID:8056774 !$#accession PC2124 !'##molecule_type DNA !'##residues 1-11 ##label MIY COMMENT This is a chimeric enzyme of Escherichia coli aspartate !1aminotransferase (EC 2.6.1.1) and aromatic amino acid !1aminotransferase (EC 2.6.1.57). COMMENT The parental enzymes catalyze the reversible amino group !1transfer reaction between L-aspartate and L-glutamate, !1respectively. GENETICS !$#gene aspC; tyrB KEYWORDS aminotransferase SUMMARY #length 11 #checksum 5113 SEQUENCE /// ENTRY PC2123 #type fragment TITLE aminotransferase chimera DY392 - synthetic (fragment) ORGANISM #formal_name synthetic DATE 28-May-1999 #sequence_revision 28-May-1999 #text_change 28-May-1999 ACCESSIONS PC2123 REFERENCE JX0315 !$#authors Miyazawa, K.; Kawaguchi, S.; Okamoto, A.; Kato, R.; Ogawa, !1T.; Kuramitsu, S. !$#journal J. Biochem. (1994) 115:568-577 !$#title Construction of aminotransferase chimeras and analysis of !1their substrate specificity. !$#cross-references MUID:94334304; PMID:8056774 !$#accession PC2123 !'##molecule_type DNA !'##residues 1-12 ##label MIY COMMENT This is a chimeric enzyme of Escherichia coli aspartate !1aminotransferase (EC 2.6.1.1) and aromatic amino acid !1aminotransferase (EC 2.6.1.57). COMMENT The parental enzymes catalyze the reversible amino group !1transfer reaction between L-aspartate and L-glutamate, !1respectively. KEYWORDS aminotransferase SUMMARY #length 12 #checksum 6035 SEQUENCE /// ENTRY PC2121 #type fragment TITLE aminotransferase chimera DY90 - synthetic (fragment) ORGANISM #formal_name synthetic DATE 28-May-1999 #sequence_revision 28-May-1999 #text_change 28-May-1999 ACCESSIONS PC2121 REFERENCE JX0315 !$#authors Miyazawa, K.; Kawaguchi, S.; Okamoto, A.; Kato, R.; Ogawa, !1T.; Kuramitsu, S. !$#journal J. Biochem. (1994) 115:568-577 !$#title Construction of aminotransferase chimeras and analysis of !1their substrate specificity. !$#cross-references MUID:94334304; PMID:8056774 !$#accession PC2121 !'##molecule_type DNA !'##residues 1-12 ##label MIY COMMENT This is a chimeric enzyme of Escherichia coli aspartate !1aminotransferase (EC 2.6.1.1) and aromatic amino acid !1aminotransferase (EC 2.6.1.57). COMMENT The parental enzymes catalyze the reversible amino group !1transfer reaction between L-aspartate and L-glutamate, !1respectively. KEYWORDS aminotransferase SUMMARY #length 12 #checksum 5818 SEQUENCE /// ENTRY S58502 #type complete TITLE probable IAA15 pseudogene - Arabidopsis thaliana ORGANISM #formal_name Arabidopsis thaliana #common_name mouse-ear cress DATE 26-Feb-1999 #sequence_revision 26-Feb-1999 #text_change 14-May-1999 ACCESSIONS S58502; S71409 REFERENCE S58491 !$#authors Abel, S.; Nguyen, M.D.; Theologis, A. !$#journal J. Mol. Biol. (1995) 251:533-549 !$#title The PS-IAA4/5-like family of early auxin-inducible mRNAs in !1Arabidopsis thaliana. !$#cross-references MUID:95387393; PMID:7658471 !$#accession S58502 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-69 ##label ABE !'##cross-references EMBL:U18417; NID:g972932 REFERENCE S71406 !$#authors Theologis, A. !$#submission submitted to the EMBL Data Library, December 1994 !$#accession S71409 !'##molecule_type DNA !'##residues 1-56,58-69 ##label THE !'##cross-references EMBL:U18417 GENETICS !$#introns 52/1 KEYWORDS pseudogene SUMMARY #length 69 #molecular-weight 7941 #checksum 1926 SEQUENCE /// ENTRY A24030 #type complete TITLE phosphoglycerate kinase (EC 2.7.2.3) autosomal pseudogene - human ORGANISM #formal_name Homo sapiens #common_name man DATE 28-Sep-1987 #sequence_revision 03-Oct-1995 #text_change 14-May-1999 ACCESSIONS A24030 REFERENCE A24030 !$#authors Tani, K.; Singer-Sam, J.; Munns, M.; Yoshida, A. !$#journal Gene (1985) 35:11-18 !$#cross-references MUID:85286340; PMID:3839763 !$#accession A24030 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-415 ##label TAN !'##note homology and discontinuous numbering in the sequence figure !1show that the sequence is permuted GENETICS !$#gene GDB:PGK1P2 !$#map_position 6p21-cen !$#introns #status absent KEYWORDS phosphotransferase; pseudogene FEATURE !$341 #region amber stop codon SUMMARY #length 415 #molecular-weight 44683 #checksum 9011 SEQUENCE /// ENTRY GNHUL1 #type complete TITLE retrovirus-related reverse transcriptase pseudogene - human ORGANISM #formal_name Homo sapiens #common_name man DATE 31-Mar-1988 #sequence_revision 04-Jan-1996 #text_change 14-May-1999 ACCESSIONS A25313 REFERENCE A93381 !$#authors Hattori, M.; Kuhara, S.; Takenaka, O.; Sakaki, Y. !$#journal Nature (1986) 321:625-628 !$#title L1 family of repetitive DNA sequences in primates may be !1derived from a sequence encoding a reverse !1transcriptase-related protein. !$#cross-references MUID:86230917; PMID:2423883 !$#accession A25313 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-1259 ##label HAT !'##note this sequence was constructed from an alignment of published !1and unpublished sequences, determined in various !1laboratories, belonging to the LINE-1 family KEYWORDS reverse transcriptase; pseudogene SUMMARY #length 1259 #molecular-weight 147112 #checksum 7180 SEQUENCE /// ENTRY GNLRL1 #type complete TITLE retrovirus-related reverse transcriptase pseudogene - slow loris ORGANISM #formal_name Nycticebus coucang #common_name slow loris DATE 31-Mar-1988 #sequence_revision 04-Jan-1996 #text_change 14-May-1999 ACCESSIONS B25313 REFERENCE A93381 !$#authors Hattori, M.; Kuhara, S.; Takenaka, O.; Sakaki, Y. !$#journal Nature (1986) 321:625-628 !$#title L1 family of repetitive DNA sequences in primates may be !1derived from a sequence encoding a reverse !1transcriptase-related protein. !$#cross-references MUID:86230917; PMID:2423883 !$#accession B25313 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-1260 ##label HAT !'##note this sequence was constructed from an alignment of six !1sequences, determined by these authors but not shown, !1belonging to the LINE-1 family KEYWORDS reverse transcriptase; pseudogene SUMMARY #length 1260 #molecular-weight 147042 #checksum 3748 SEQUENCE /// ENTRY B44282 #type complete TITLE retrovirus-related env polyprotein pseudogene - human ALTERNATE_NAMES coat polyprotein CONTAINS coat protein gp70; coat protein p20E ORGANISM #formal_name Homo sapiens #common_name man DATE 17-Feb-1994 #sequence_revision 04-Jan-1996 #text_change 14-May-1999 ACCESSIONS B44282 REFERENCE A44282 !$#authors Hirose, Y.; Takamatsu, M.; Harada, F. !$#journal Virology (1993) 192:52-61 !$#title Presence of env genes in members of the RTVL-H family of !1human endogenous retrovirus-like elements. !$#cross-references MUID:93297138; PMID:8517031 !$#accession B44282 !'##status conceptual translation of pseudogene !'##molecule_type mRNA !'##residues 1-570 ##label HIR !'##cross-references GB:D10083 GENETICS !$#gene env KEYWORDS coat protein; polyprotein; pseudogene FEATURE !$1-372 #domain coat protein gp70 #label CGP\ !$370 #region opal stop codon\ !$373-569 #domain coat protein p20E #label CPP\ !$436-448 #region immunosuppressive peptide SUMMARY #length 570 #molecular-weight 62734 #checksum 2715 SEQUENCE /// ENTRY A26718 #type fragment TITLE retrovirus-related pol polyprotein pseudogene - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 31-Mar-1991 #sequence_revision 04-Jan-1996 #text_change 14-May-1999 ACCESSIONS A26718 REFERENCE A26718 !$#authors Fluegel, R.M.; Maurer, B.; Bannert, H.; Rethwilm, A.; !1Schnitzler, P.; Darai, G. !$#journal Mol. Cell. Biol. (1987) 7:231-236 !$#title Nucleotide sequence analysis of a cloned DNA fragment from !1human cells reveals homology to retrotransposons. !$#cross-references MUID:87172709; PMID:3031462 !$#accession A26718 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-335 ##label FLU COMMENT The DNA was isolated from human embryonic lung fibroblasts !1infected with human spumaretrovirus. KEYWORDS polyprotein; reverse transcriptase; pseudogene SUMMARY #length 335 #checksum 453 SEQUENCE /// ENTRY S23741 #type complete TITLE hypothetical TPR/TRK mutant fusion protein - human ORGANISM #formal_name Homo sapiens #common_name man DATE 25-Feb-1994 #sequence_revision 10-Sep-1997 #text_change 14-May-1999 ACCESSIONS S23741 REFERENCE S23741 !$#authors Greco, A.; Pierotti, M.A.; Bongarzone, I.; Pagliardini, S.; !1Lanzi, C.; Della Porta, G. !$#journal Oncogene (1992) 7:237-242 !$#title TRK-T1 is a novel oncogene formed by the fusion of TPR and !1TRK genes in human papillary thyroid carcinomas. !$#cross-references MUID:92195650; PMID:1532241 !$#accession S23741 !'##molecule_type mRNA !'##residues 1-503 ##label GRE !'##cross-references EMBL:X62947 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene TPR/TRK KEYWORDS fusion protein SUMMARY #length 503 #molecular-weight 58174 #checksum 9243 SEQUENCE /// ENTRY A31199 #type fragment TITLE beta-galactosidase/DNA-directed RNA polymerase II large chain fusion protein - human (fragment) ALTERNATE_NAMES 125K fusion protein ORGANISM #formal_name Homo sapiens #common_name man #note gene engineered and expressed in Escherichia coli DATE 31-Mar-1990 #sequence_revision 07-Mar-1996 #text_change 14-May-1999 ACCESSIONS A31199 REFERENCE A31199 !$#authors Rappaport, J.; Cho, K.; Saltzman, A.; Prenger, J.; Golomb, !1M.; Weinmann, R. !$#journal Mol. Cell. Biol. (1988) 8:3136-3142 !$#title Transcription elongation factor SII interacts with a domain !1of the large subunit of human RNA polymerase II. !$#cross-references MUID:89096900; PMID:3145407 !$#accession A31199 !'##molecule_type DNA !'##residues 1-113 ##label RAP KEYWORDS fusion protein FEATURE !$1-83 #region DNA-directed RNA polymerase II large chain\ !$84-113 #region translated intron SUMMARY #length 113 #checksum 7813 SEQUENCE /// ENTRY FOHUE2 #type complete TITLE retrovirus-related gag polyprotein (version 2) pseudogene - human ORGANISM #formal_name Homo sapiens #common_name man DATE 28-Dec-1987 #sequence_revision 04-Jan-1996 #text_change 14-May-1999 ACCESSIONS B24483 REFERENCE A93023 !$#authors Ono, M.; Yasunaga, T.; Miyata, T.; Ushikubo, H. !$#journal J. Virol. (1986) 60:589-598 !$#title Nucleotide sequence of human endogenous retrovirus genome !1related to the mouse mammary tumor virus genome. !$#cross-references MUID:87036922; PMID:3021993 !$#accession B24483 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-413 ##label ONO !'##cross-references GB:M14123; NID:g182227 GENETICS !$#gene gag KEYWORDS core protein; polyprotein; pseudogene SUMMARY #length 413 #molecular-weight 45517 #checksum 9112 SEQUENCE /// ENTRY GNHUER #type complete TITLE retrovirus-related pol polyprotein pseudogene - human CONTAINS endonuclease (EC 3.1.-.-); RNA-directed DNA polymerase (EC 2.7.7.49) ORGANISM #formal_name Homo sapiens #common_name man DATE 28-Dec-1987 #sequence_revision 04-Jan-1996 #text_change 14-May-1999 ACCESSIONS D24483 REFERENCE A93023 !$#authors Ono, M.; Yasunaga, T.; Miyata, T.; Ushikubo, H. !$#journal J. Virol. (1986) 60:589-598 !$#title Nucleotide sequence of human endogenous retrovirus genome !1related to the mouse mammary tumor virus genome. !$#cross-references MUID:87036922; PMID:3021993 !$#accession D24483 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-874 ##label ONO !'##cross-references GB:M14123; NID:g182227 GENETICS !$#gene pol KEYWORDS endonuclease; hydrolase; nucleotidyltransferase; !1polyprotein; pseudogene; reverse transcriptase FEATURE !$36-250 #domain RNA-directed DNA polymerase #label REV\ !$585-764 #domain endonuclease #label END SUMMARY #length 874 #molecular-weight 98936 #checksum 5433 SEQUENCE /// ENTRY VCHUER #type complete TITLE retrovirus-related env polyprotein pseudogene - human ORGANISM #formal_name Homo sapiens #common_name man DATE 28-Dec-1987 #sequence_revision 04-Jan-1996 #text_change 14-May-1999 ACCESSIONS E24483 REFERENCE A93023 !$#authors Ono, M.; Yasunaga, T.; Miyata, T.; Ushikubo, H. !$#journal J. Virol. (1986) 60:589-598 !$#title Nucleotide sequence of human endogenous retrovirus genome !1related to the mouse mammary tumor virus genome. !$#cross-references MUID:87036922; PMID:3021993 !$#accession E24483 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-584 ##label ONO !'##cross-references GB:M14123; NID:g182227 GENETICS !$#gene env KEYWORDS capsid protein; coat protein; polyprotein; pseudogene SUMMARY #length 584 #molecular-weight 66076 #checksum 2682 SEQUENCE /// ENTRY PRHUER #type complete TITLE retrovirus-related proteinase (EC 3.4.21.-) pseudogene - human ORGANISM #formal_name Homo sapiens #common_name man DATE 28-Dec-1987 #sequence_revision 04-Jan-1996 #text_change 14-May-1999 ACCESSIONS C24483 REFERENCE A93023 !$#authors Ono, M.; Yasunaga, T.; Miyata, T.; Ushikubo, H. !$#journal J. Virol. (1986) 60:589-598 !$#title Nucleotide sequence of human endogenous retrovirus genome !1related to the mouse mammary tumor virus genome. !$#cross-references MUID:87036922; PMID:3021993 !$#accession C24483 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-334 ##label ONO !'##cross-references GB:M14123; NID:g182227 !'##note only part of this open reading frame is translated in the !1GenBank entry with PID:g1196428 GENETICS !$#gene prt KEYWORDS hydrolase; proteinase; pseudogene; serine proteinase SUMMARY #length 334 #molecular-weight 35399 #checksum 2724 SEQUENCE /// ENTRY A24847 #type fragment TITLE hypothetical BCR/ABL mutant fusion protein, clone ba4.1 - human (fragment) ALTERNATE_NAMES chimeric breakpoint cluster region protein/kinase-related transforming protein ORGANISM #formal_name Homo sapiens #common_name man DATE 05-Oct-1988 #sequence_revision 01-Mar-1996 #text_change 14-May-1999 ACCESSIONS A24847 REFERENCE A93088 !$#authors Grosveld, G.; Verwoerd, T.; van Agthoven, T.; de Klein, A.; !1Ramachandran, K.L.; Heisterkamp, N.; Stam, K.; Groffen, J. !$#journal Mol. Cell. Biol. (1986) 6:607-616 !$#title The chronic myelocytic cell line K562 contains a breakpoint !1in bcr and produces a chimeric bcr/c-abl transcript. !$#cross-references MUID:87064346; PMID:3023859 !$#accession A24847 !'##molecule_type mRNA !'##residues 1-156 ##label GRO !'##cross-references GB:M13096; NID:g188566 !'##experimental_source cell line K562, clone ba4.1 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene BCR/ABL !$#map_position 22q11/9q34 !$#introns 12/1; 37/1; 95/1 KEYWORDS breakpoint cluster region; fusion protein; leukemia SUMMARY #length 156 #checksum 864 SEQUENCE /// ENTRY I67792 #type complete TITLE probable glucosylceramidase (EC 3.2.1.45) pseudogene, clone pGC12A - human ALTERNATE_NAMES glucocerebrosidase pseudogene ORGANISM #formal_name Homo sapiens #common_name man DATE 12-Aug-1996 #sequence_revision 21-Feb-1997 #text_change 14-May-1999 ACCESSIONS I67792 REFERENCE I53691 !$#authors Imai, K.; Nakamura, M.; Yamada, M.; Asano, A.; Yokoyama, S.; !1Tsuji, S.; Ginns, E.I. !$#journal Gene (1993) 136:365-368 !$#title A novel transcript from a pseudogene for human !1glucocerebrosidase in non-Gaucher disease cells. !$#cross-references MUID:94124033; PMID:8294033 !$#accession I67792 !'##status preliminary; translated from GB/EMBL/DDBJ; conceptual !1translation of pseudogene !'##molecule_type mRNA !'##residues 1-263 ##label RES !'##cross-references DDBJ:D13287; NID:g496370 KEYWORDS glycosidase; hydrolase; pseudogene SUMMARY #length 263 #molecular-weight 29992 #checksum 1759 SEQUENCE /// ENTRY S16048 #type complete TITLE probable pilin Ngr-27 pseudogene - Neisseria gonorrhoeae ORGANISM #formal_name Neisseria gonorrhoeae DATE 20-Feb-1995 #sequence_revision 17-Mar-1997 #text_change 14-May-1999 ACCESSIONS S16048 REFERENCE S19120 !$#authors Haas, R.; Veit, S.; Meyer, T.F. !$#journal Mol. Microbiol. (1992) 6:197-208 !$#title Silent pilin genes of Neisseria gonorrhoeae MS11 and the !1occurrence of related hypervariant sequences among other !1gonococcal isolates. !$#cross-references MUID:92186710; PMID:1347637 !$#accession S16048 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-53 ##label HAA !'##cross-references EMBL:X60751; NID:g44987 !'##note submitted to the EMBL Data Library, June 1991 KEYWORDS pseudogene SUMMARY #length 53 #molecular-weight 6125 #checksum 6186 SEQUENCE /// ENTRY TVHUBD #type complete TITLE transforming protein dbl mutant fusion protein - human ORGANISM #formal_name Homo sapiens #common_name man DATE 31-Dec-1989 #sequence_revision 15-Mar-1996 #text_change 14-May-1999 ACCESSIONS A28051 REFERENCE A28051 !$#authors Eva, A.; Vecchio, G.; Rao, C.D.; Tronick, S.R.; Aaronson, !1S.A. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1988) 85:2061-2065 !$#title The predicted DBL oncogene product defines a distinct class !1of transforming proteins. !$#cross-references MUID:88176886; PMID:3281159 !$#accession A28051 !'##molecule_type mRNA !'##residues 1-478 ##label EVA !'##cross-references EMBL:J03639 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene -/MCF2 !$#map_position -/Xq26.3-q27.1 KEYWORDS fusion protein; transforming protein FEATURE !$1-50 #region unidentified locus\ !$51-478 #region transforming protein dbl SUMMARY #length 478 #molecular-weight 55892 #checksum 4386 SEQUENCE /// ENTRY S07060 #type fragment TITLE opsin, red-sensitive/green-sensitive mutant fusion protein - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 30-Sep-1991 #sequence_revision 08-Nov-1996 #text_change 14-May-1999 ACCESSIONS S07060 REFERENCE S07060 !$#authors Neitz, J.; Neitz, M.; Jacobs, G.H. !$#journal Nature (1989) 342:679-682 !$#title Analysis of fusion gene and encoded photopigment of !1colour-blind humans. !$#cross-references MUID:90081838; PMID:2574415 !$#accession S07060 !'##status not compared with conceptual translation !'##molecule_type DNA !'##residues 1-290 ##label NEI !'##cross-references GB:X54675; NID:g35468 !'##note this is a mutant fusion sequence with exons 2 and 3 of the !1red-sensitive opsin gene and exons 4 and 5 of a !1green-sensitive opsin gene from a patient with red-green !1color blindness GENETICS !$#gene RCP/GCP !$#map_position Xq28-Xq28/Xq28-Xq28 KEYWORDS fusion protein; G protein-coupled receptor FEATURE !$1-155 #region opsin, red-sensitive (fragment)\ !$156-290 #region opsin, green-sensitive (fragment) SUMMARY #length 290 #checksum 7061 SEQUENCE /// ENTRY S09612 #type complete TITLE hypothetical XrepBE protein - human ORGANISM #formal_name Homo sapiens #common_name man DATE 12-Mar-1999 #sequence_revision 12-Mar-1999 #text_change 12-Mar-1999 ACCESSIONS S09612 REFERENCE S09612 !$#authors Riley, D.E. !$#journal Nucleic Acids Res. (1989) 17:2361 !$#title Nucleotide sequence of the plasmid stimulating portion of !1Xrep. !$#cross-references MUID:89202053; PMID:2704628 !$#accession S09612 !'##status translation not shown !'##molecule_type DNA !'##residues 1-139 ##label RIL !'##cross-references EMBL:X13896; NID:g37998 COMMENT This sequence is not thought to be translated. GENETICS !$#gene Xrep SUMMARY #length 139 #molecular-weight 14470 #checksum 4153 SEQUENCE /// ENTRY S10118 #type fragment TITLE hemoglobin beta-h2 pseudogene - mouse (fragment) ORGANISM #formal_name Mus musculus #common_name house mouse DATE 21-Nov-1993 #sequence_revision 12-Feb-1998 #text_change 14-May-1999 ACCESSIONS S10118 REFERENCE S10115 !$#authors Jahn, C.L.; Hutchison III, C.A.; Phillips, S.J.; Weaver, S.; !1Haigwood, N.L.; Voliva, C.F.; Edgell, M.H. !$#journal Cell (1980) 21:159-168 !$#title DNA sequence organization of the beta-globin complex in the !1BALB/c mouse. !$#cross-references MUID:81001851; PMID:6250710 !$#accession S10118 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-52 ##label JAH !'##cross-references EMBL:V00725; NID:g50161 KEYWORDS pseudogene SUMMARY #length 52 #checksum 4447 SEQUENCE /// ENTRY S34484 #type complete TITLE retropepsin (EC 3.4.23.16), recombinant with poly-His - synthetic ORGANISM #formal_name synthetic DATE 19-Mar-1997 #sequence_revision 05-Dec-1997 #text_change 14-May-1999 ACCESSIONS S34484 REFERENCE S34484 !$#authors Leuthardt, A.; Roesel, J.L. !$#journal FEBS Lett. (1993) 326:275-280 !$#title Cloning, expression and purification of a recombinant !1poly-histidine-linked HIV-1 protease. !$#cross-references MUID:93314803; PMID:8325379 !$#accession S34484 !'##molecule_type DNA !'##residues 1-113 ##label LEU KEYWORDS aspartic proteinase; hydrolase SUMMARY #length 113 #molecular-weight 12419 #checksum 6736 SEQUENCE /// ENTRY A42590 #type fragment TITLE glycophorin B/glycophorin A mutant fusion protein MiX - human (fragment) ALTERNATE_NAMES glycophorin, blood group Miltenberger class V ORGANISM #formal_name Homo sapiens #common_name man DATE 04-Mar-1993 #sequence_revision 04-Sep-1997 #text_change 14-May-1999 ACCESSIONS A42590; S06108 REFERENCE A42590 !$#authors Huang, C.H.; Kikuchi, M.; McCreary, J.; Blumenfeld, O.O. !$#journal J. Biol. Chem. (1992) 267:3336-3342 !$#title Gene conversion confined to a direct repeat of the acceptor !1splice site generates allelic diversity at human glycophorin !1(GYP) locus. !$#cross-references MUID:92147692; PMID:1737789 !$#accession A42590 !'##status not compared with conceptual translation !'##molecule_type DNA; mRNA !'##residues 1-71 ##label HUA !'##cross-references GB:M81079; NID:g183348 !'##experimental_source blood !'##note sequence extracted from NCBI backbone (NCBIP:81191); the !1translation in PID:g553307 is incomplete REFERENCE S06108 !$#authors Vignal, A.; Rahuel, C.; El Maliki, B.; London, J.; Le Van !1Kim, C.; Blanchard, D.; Andre, C.; d'Auriol, L.; Galibert, !1F.; Blajchman, M.A.; Cartron, J.P. !$#journal Eur. J. Biochem. (1989) 184:337-344 !$#title Molecular analysis of glycophorin A and B gene structure and !1expression in homozygous Miltenberger class V (Mi.V) human !1erythrocytes. !$#cross-references MUID:90005483; PMID:2792104 !$#accession S06108 !'##molecule_type DNA !'##residues 35-67 ##label VIG !'##cross-references EMBL:X15823 GENETICS !$#gene GYPB/GYPA/GYPB !$#map_position 4q28-4q31/4q28-4q31/4q28-4q31 !$#introns 59/1 KEYWORDS blood group; erythrocyte; fusion protein; glycoprotein; !1sialoglycoprotein; transmembrane protein SUMMARY #length 71 #checksum 7249 SEQUENCE /// ENTRY S00072 #type complete TITLE glycophorin B/glycophorin A mutant fusion protein Dantu - human ORGANISM #formal_name Homo sapiens #common_name man DATE 07-Sep-1990 #sequence_revision 04-Sep-1997 #text_change 14-May-1999 ACCESSIONS S00072 REFERENCE S00072 !$#authors Dahr, W.; Beyreuther, K.; Moulds, J.; Unger, P. !$#journal Eur. J. Biochem. (1987) 166:31-36 !$#title Hybrid glycophorins from human erythrocyte membranes. I. !1Isolation and complete structural analysis of the hybrid !1sialoglycoprotein from Dantu-positive red cells of the N.E. !1variety. !$#cross-references MUID:87246688; PMID:3595615 !$#accession S00072 !'##molecule_type protein !'##residues 1-99 ##label DAH GENETICS !$#gene GYPB/GYPA; Dantu KEYWORDS blood group; erythrocyte; fusion protein; glycoprotein; !1sialoglycoprotein; transmembrane protein FEATURE !$1-39 #region glycophorin B\ !$40-99 #region glycophorin A SUMMARY #length 99 #molecular-weight 10617 #checksum 7778 SEQUENCE /// ENTRY A33152 #type complete TITLE glycophorin A/glycophorin B mutant fusion proteins - human CONTAINS glycophorin mutant MiIII; glycophorin mutant MiVI ORGANISM #formal_name Homo sapiens #common_name man DATE 01-Feb-1991 #sequence_revision 21-Aug-1997 #text_change 14-May-1999 ACCESSIONS A33152; A39785 REFERENCE A33152 !$#authors Johe, K.K.; Smith, A.J.; Blumenfeld, O.O. !$#submission submitted to the Protein Sequence Database, January 1991 !$#accession A33152 !'##molecule_type protein !'##residues 1-103 ##label JOH !'##experimental_source glycophorin mutant MiIII !'##note the DNA sequence for this mutant was also determined and !1reported in reference A39785 REFERENCE A39785 !$#authors Huang, C.H.; Blumenfeld, O.O. !$#journal J. Biol. Chem. (1991) 266:7248-7255 !$#title Molecular genetics of human erythrocyte MiIII and MiVI !1glycophorins. Use of a pseudoexon in construction of two !1delta-alpha-delta hybrid genes resulting in antigenic !1diversification. !$#cross-references MUID:91201388; PMID:2016325 !$#accession A39785 !'##molecule_type DNA !'##residues 1-47,'T',49-70 ##label HUA !'##cross-references GB:M60710 !'##experimental_source glycophorin mutant MiVI !'##note the complete translation is not shown in this report !'##note the DNA sequence for mutant MiIII was also determined and !1reported in this reference but was not assigned an accession !1by GenBank GENETICS !$#gene GYPA/GYPB KEYWORDS blood group; erythrocyte; fusion protein; glycoprotein; !1sialoglycoprotein; transmembrane protein FEATURE !$1-26 #region glycophorin A\ !$27-57 #region glycophorin B pseudoexon\ !$58-103 #region glycophorin B SUMMARY #length 103 #molecular-weight 11285 #checksum 2119 SEQUENCE /// ENTRY S70252 #type fragment TITLE hypothetical protein nifD2 region - Anabaena variabilis (fragment) ORGANISM #formal_name Anabaena variabilis DATE 05-Mar-1999 #sequence_revision 05-Mar-1999 #text_change 05-Mar-1999 ACCESSIONS S70252 REFERENCE S70242 !$#authors Schrautemeier, B.; Neveling, U.; Schmitz, S. !$#journal Mol. Microbiol. (1995) 18:357-369 !$#title Distinct and differently regulated Mo-dependent !1nitrogen-fixing systems evolved for heterocysts and !1vegetative cells of Anabaena variabilis ATCC 29413: !1characterization of the fdxH1/2 gene regions as part of the !1nif1/2 gene clusters. !$#cross-references MUID:96296457; PMID:8709854 !$#accession S70252 !'##status nucleic acid sequence not shown; translation not shown !'##molecule_type DNA !'##residues 1-52 ##label SCH !'##cross-references EMBL:U25172; NID:1160349 !'##experimental_source ATCC 29413 !'##note the nucleotide sequence was submitted to the EMBL Data Library, !1April 1995 COMMENT This is the hypothetical translation of a sequence !1translated in an incorrect reading frame. For the correct !1translation see PIR:A58935. SUMMARY #length 52 #checksum 7526 SEQUENCE /// ENTRY JC5161 #type complete TITLE hypothetical orf5 pemK-region - Mycobacterium tuberculosis ORGANISM #formal_name Mycobacterium tuberculosis DATE 03-Dec-1998 #sequence_revision 03-Dec-1998 #text_change 03-Dec-1998 ACCESSIONS JC5161 REFERENCE JC5158 !$#authors Tyagi, J.S.; Das, T.K.; Kinger, A.K. !$#journal Gene (1996) 177:59-67 !$#title An M. tuberculosis DNA fragment contains genes encoding cell !1division proteins ftsX and ftsE, a basic protein and !1homologues of PemK and small protein B. !$#cross-references MUID:97080501; PMID:8921846 !$#accession JC5161 !'##status nucleic acid sequence not shown; translation not shown !'##molecule_type DNA !'##residues 1-102 ##label TYA !'##cross-references EMBL:X70031; NID:g1783345 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. SUMMARY #length 102 #molecular-weight 11241 #checksum 6866 SEQUENCE /// ENTRY PC4402 #type fragment TITLE pelB leader/Ig heavy chain anti-NP/linker type 205/alkaline phosphatase fusion protein - synthetic (fragment) ORGANISM #formal_name synthetic DATE 06-Nov-1998 #sequence_revision 06-Nov-1998 #text_change 06-Nov-1998 ACCESSIONS PC4402 REFERENCE PC4402 !$#authors Suzuki, C.; Ueda, H.; Suzuki, E.; Nagamune, T. !$#journal J. Biochem. (1997) 122:322-329 !$#title Construction, bacterial expression, and characterization of !1hapten-specific single-chain Fv and alkaline phosphatase !1fusion protein. !$#accession PC4402 !'##molecule_type DNA !'##residues 1-287 ##label SUZ KEYWORDS fusion protein SUMMARY #length 287 #checksum 2372 SEQUENCE /// ENTRY A61355 #type complete TITLE hypothetical protein - Euglena gracilis chloroplast ORGANISM #formal_name chloroplast Euglena gracilis DATE 06-Nov-1998 #sequence_revision 06-Nov-1998 #text_change 06-Nov-1998 ACCESSIONS A61355 REFERENCE A61355 !$#authors Orozco Jr., E.M.; Hallick, R.B. !$#journal J. Biol. Chem. (1982) 257:3265-3275 !$#title Euglena gracilis chloroplast transfer RNA transcription !1units. II. Nucleotide sequence analysis of a tRNA(Val)-tRNA !1(Asn)-tRNA(Arg)-tRNA(Leu) gene cluster. !$#cross-references MUID:82142472; PMID:6277930 !$#accession A61355 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-91 ##label ORO !'##cross-references GB:V00160; NID:g11527 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. GENETICS !$#genome chloroplast !$#introns 30/3 KEYWORDS chloroplast; pseudogene FEATURE !$31 #region opal stop codon SUMMARY #length 91 #molecular-weight 10206 #checksum 538 SEQUENCE /// ENTRY JC5655 #type complete TITLE UDP-galactose-4'-epimerase/NADH dehydrogenase chain 4 fusion protein - synthetic ORGANISM #formal_name synthetic #note gene engineered and expressed in Saccharomyces cerevisiae DATE 30-Oct-1998 #sequence_revision 30-Oct-1998 #text_change 30-Oct-1998 ACCESSIONS JC5655 REFERENCE JC5655 !$#authors Hogue, D.L.; Ellison, M.J.; Vickers, M.; Cass, C.E. !$#journal Biochem. Biophys. Res. Commun. (1997) 238:811-816 !$#title Functional complementation of a membrane transport !1deficiency in Saccharomyces cerevisiae by recombinant ND4 !1fusion protein. !$#cross-references MUID:97472293; PMID:9325173 !$#accession JC5655 !'##molecule_type mRNA !'##residues 1-139 ##label HOG KEYWORDS fusion protein SUMMARY #length 139 #molecular-weight 15043 #checksum 8868 SEQUENCE /// ENTRY S12902 #type fragment TITLE diphtheria toxin fusion protein - synthetic (fragment) ORGANISM #formal_name synthetic #note gene engineered and expressed in Escherichia coli DATE 30-Oct-1998 #sequence_revision 30-Oct-1998 #text_change 30-Oct-1998 ACCESSIONS S12902 REFERENCE S12902 !$#authors O'Hare, M.; Brown, A.N.; Hussain, K.; Gebhardt, A.; Watson, !1G.; Roberts, L.M.; Vitetta, E.S.; Thorpe, P.E.; Lord, J.M. !$#journal FEBS Lett. (1990) 273:200-204 !$#title Cytotoxicity of a recombinant ricin-A-chain fusion protein !1containing a proteolytically-cleavable spacer sequence. !$#cross-references MUID:91032180; PMID:2121540 !$#accession S12902 !'##molecule_type DNA !'##residues 1-30 ##label OHA KEYWORDS fusion protein SUMMARY #length 30 #checksum 5570 SEQUENCE /// ENTRY S60901 #type complete TITLE hypothetical protein copP 5'-region - Helicobacter pylori (strain NCTC 11639) ALTERNATE_NAMES hypothetical protein 3 ORGANISM #formal_name Helicobacter pylori DATE 15-Oct-1998 #sequence_revision 15-Oct-1998 #text_change 15-Oct-1998 ACCESSIONS S60901 REFERENCE S60899 !$#authors Ge, Z.; Hiratsuka, K.; Taylor, D.E. !$#journal Mol. Microbiol. (1995) 15:97-106 !$#title Nucleotide sequence and mutational analysis indicate that !1two Helicobacter pylori genes encode a P-type ATPase and a !1cation-binding protein associated with copper transport. !$#cross-references MUID:95272397; PMID:7752900 !$#accession S60901 !'##molecule_type DNA !'##residues 1-80 ##label GEZ !'##cross-references EMBL:L33259; NID:g1518875 !'##experimental_source strain NCTC 11639 !'##note this ORF is not annotated in GenBank entry HECCOPA, release !1106.0 COMMENT This is the hypothetical translation of a sequence that was !1not reported as a coding sequence in the complete genome. SUMMARY #length 80 #molecular-weight 9549 #checksum 7351 SEQUENCE /// ENTRY JC6530 #type complete TITLE laminin receptor processed pseudogene LAMRL5 - human ORGANISM #formal_name Homo sapiens #common_name man DATE 28-Aug-1998 #sequence_revision 28-Aug-1998 #text_change 28-Aug-1998 ACCESSIONS JC6530 REFERENCE JC6530 !$#authors Richardson, M.P.; Braybrook, C.; Tham, M.; Moore, G.E.; !1Stanier, P. !$#journal Gene (1998) 206:145-150 !$#title Molecular cloning and characterization of a highly conserved !1human 67-kDa laminin receptor pseudogene mapping to Xq21.3. !$#cross-references MUID:98121324; PMID:9461426 !$#accession JC6530 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-295 ##label RIC !'##experimental_source brain COMMENT No evidence could be found that this intronless gene !1sequence is expressed. GENETICS !$#gene LAMRL5 !$#map_position Xq21.3 !$#introns #status absent KEYWORDS brain; glycoprotein; laminin binding; pseudogene; receptor SUMMARY #length 295 #molecular-weight 33058 #checksum 5642 SEQUENCE /// ENTRY JS0104 #type complete TITLE probable 2.8K protein pseudogene - cucumber mosaic virus (strain Y) ORGANISM #formal_name cucumber mosaic virus, CMV #note host Nicotiana tabacum cv. Xanthi nc (tobacco) DATE 31-Mar-1992 #sequence_revision 28-May-1998 #text_change 28-May-1998 ACCESSIONS JS0104 REFERENCE JA0077 !$#authors Hidaka, S.; Ishikawa, K.; Takanami, Y.; Kubo, S.; Miura, K. !$#journal FEBS Lett. (1984) 174:38-42 !$#title Complete nucleotide sequence of RNA 5 from cucumber mosaic !1virus (strain Y). !$#accession JS0104 !'##status translation not shown; conceptual translation of pseudogene !'##molecule_type genomic RNA !'##residues 1-27 ##label HID COMMENT CMV is an icosahedral virus containing a tripartite, !1positive-stranded RNA genome composed of three !1single-stranded RNA's and a subgenomic RNA. Some strains !1contain an additional RNA component referred to as satellite !1RNA. GENETICS !$#map_position segment 5 KEYWORDS pseudogene SUMMARY #length 27 #molecular-weight 2839 #checksum 8384 SEQUENCE /// ENTRY JE0021 #type complete TITLE probable 4.8K protein pseudogene - cucumber mosaic virus (strain Indonesia, isolates X2cT2, X2ChT3, Ch4T2) ORGANISM #formal_name cucumber mosaic virus, CMV DATE 31-Dec-1991 #sequence_revision 28-May-1998 #text_change 28-May-1998 ACCESSIONS JE0021 REFERENCE JE0018 !$#authors Kaper, J.M.; Tousignant, M.E.; Steen, M.T. !$#journal Virology (1988) 163:284-292 !$#title Cucumber mosaic virus-associated RNA 5. XI. Comparison of 14 !1CARNA 5 variants relates ability to induce tomato necrosis !1to a conserved nucleotide sequence. !$#cross-references MUID:88179532; PMID:3354198 !$#accession JE0021 !'##status translation not shown; conceptual translation of pseudogene !'##molecule_type genomic RNA !'##residues 1-42 ##label KAP GENETICS !$#map_position segment 5 KEYWORDS pseudogene SUMMARY #length 42 #molecular-weight 4821 #checksum 857 SEQUENCE /// ENTRY JE0019 #type complete TITLE probable 4K protein pseudogene - cucumber mosaic virus (strain Indonesia, isolates X12 and X15) ORGANISM #formal_name cucumber mosaic virus, CMV DATE 31-Dec-1991 #sequence_revision 28-May-1998 #text_change 28-May-1998 ACCESSIONS JE0019 REFERENCE JE0018 !$#authors Kaper, J.M.; Tousignant, M.E.; Steen, M.T. !$#journal Virology (1988) 163:284-292 !$#title Cucumber mosaic virus-associated RNA 5. XI. Comparison of 14 !1CARNA 5 variants relates ability to induce tomato necrosis !1to a conserved nucleotide sequence. !$#cross-references MUID:88179532; PMID:3354198 !$#accession JE0019 !'##status translation not shown; conceptual translation of pseudogene !'##molecule_type genomic RNA !'##residues 1-37 ##label KAP GENETICS !$#map_position segment 5 KEYWORDS pseudogene SUMMARY #length 37 #molecular-weight 4105 #checksum 3314 SEQUENCE /// ENTRY JA0077 #type complete TITLE probable 6.7K protein pseudogene - cucumber mosaic virus (strain Y) ORGANISM #formal_name cucumber mosaic virus, CMV #note host Nicotiana tabacum cv. Xanthi nc (tobacco) DATE 31-Dec-1991 #sequence_revision 28-May-1998 #text_change 28-May-1998 ACCESSIONS JA0077 REFERENCE JA0076 !$#authors Masuta, C.; Kuwata, S.; Takanami, Y. !$#journal J. Biochem. (1988) 104:841-846 !$#title Effects of extra 5' non-viral bases on the infectivity of !1transcripts from a cDNA clone of satellite RNA (strain Y) of !1cucumber mosaic virus. !$#cross-references MUID:89174521; PMID:2853159 !$#accession JA0077 !'##status conceptual translation of pseudogene !'##molecule_type genomic RNA !'##residues 1-60 ##label MAS REFERENCE JA0077 !$#authors Hidaka, S.; Ishikawa, K.; Takanami, Y.; Kubo, S.; Miura, K. !$#journal FEBS Lett. (1984) 174:38-42 !$#title Complete nucleotide sequence of RNA 5 from cucumber mosaic !1virus (strain Y). !$#contents annotation !$#note this sequence has been revised in reference JA0076 COMMENT CMV is an icosahedral virus containing a tripartite, !1positive-stranded RNA genome composed of three !1single-stranded RNA's and a subgenomic RNA. Some strains !1contain an additional RNA component referred to as satellite !1RNA. GENETICS !$#map_position segment 5 KEYWORDS pseudogene SUMMARY #length 60 #molecular-weight 6685 #checksum 5508 SEQUENCE /// ENTRY A56840 #type fragment TITLE transcription factor CBF beta - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 23-Apr-1998 #sequence_revision 23-Apr-1998 #text_change 23-Apr-1998 ACCESSIONS A56840 REFERENCE A56840 !$#authors Hajra, A.; Collins, F.S. !$#journal Genomics (1995) 26:571-579 !$#title Structure of the leukemia-associated human CBFB gene. !$#cross-references MUID:95331794; PMID:7607682 !$#accession A56840 !'##status translation not shown !'##molecule_type DNA !'##residues 1-26 ##label HAJ !'##cross-references GB:U22149 COMMENT The publication containing this sequence was retracted by !1the senior author. The genomic map position may also be in !1question. See PIR:I59579. GENETICS !$#gene GDB:CBFB; PEBP2B !'##cross-references GDB:250571; OMIM:121360 !$#map_position 16q22.1-16q22.1 SUMMARY #length 26 #checksum 6163 SEQUENCE /// ENTRY A58728 #type complete TITLE serrawettin W2 - Serratia marcescens ORGANISM #formal_name Serratia marcescens DATE 10-Feb-1998 #sequence_revision 12-Feb-1998 #text_change 12-Feb-1998 ACCESSIONS A58728 REFERENCE A58728 !$#authors Matsuyama, T.; Kaneda, K.; Nakagawa, Y.; Isa, K.; !1Hara-Hotta, H.; Yano, I. !$#journal J. Bacteriol. (1992) 174:1769-1776 !$#title A novel extracellular cyclic lipopeptide which promotes !1flagellum-dependent and -independent spreading growth of !1Serratia marcescens. !$#cross-references MUID:92193260; PMID:1548227 !$#accession A58728 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-5 ##label MAT !'##experimental_source strain NS 25 COMMENT A surfactant lipopeptide promoting flagellum-independent !1surface translocation but not subsurface translocation. KEYWORDS blocked amino end; blocked carboxyl end; D-amino acid; !1lipoprotein; unencoded polypeptide FEATURE !$1 #modified_site D-leucine (Leu) #status experimental\ !$4 #modified_site D-phenylalanine (Phe) #status !8experimental\ !$1-5 #cross-link 3-hydroxydecanoyl amino end, ester !8carboxyl end (Leu-Ile) #status experimental SUMMARY #length 5 #molecular-weight 580 #checksum 1139 SEQUENCE /// ENTRY A29526 #type complete TITLE ubiquitin B processed pseudogene - human ORGANISM #formal_name Homo sapiens #common_name man DATE 05-Jun-1988 #sequence_revision 21-Jul-1995 #text_change 14-May-1999 ACCESSIONS A29526 REFERENCE A29526 !$#authors Baker, R.T.; Board, P.G. !$#journal Nucleic Acids Res. (1987) 15:4352 !$#title Nucleotide sequence of a human ubiquitin Ub B processed !1pseudogene. !$#cross-references MUID:87231012; PMID:3035490 !$#accession A29526 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-77 ##label BAK !'##cross-references GB:Y00332; NID:g37578 KEYWORDS pseudogene SUMMARY #length 77 #molecular-weight 8614 #checksum 771 SEQUENCE /// ENTRY PC2139 #type complete TITLE hypelcin B-I - fungus (Hypocrea peltata) ORGANISM #formal_name Hypocrea peltata DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 21-Jul-1995 ACCESSIONS PC2139 REFERENCE PC2139 !$#authors Matsuura, K.; Shima, O.; Takeda, Y.; Takaishi, Y.; Nagaoka, !1Y.; Fujita, T. !$#journal Chem. Pharm. Bull. (1994) 42:1063-1069 !$#title Fungal metabolites. XV. Primary structures of antibiotic !1peptides, hypelcins B-I, B-II, B-III, B-IV and B-V, from !1Hypocrea peltata. Application of electrospray mass !1spectrometry and electrospray mass spectrometry/mass !1spectrometry. !$#accession PC2139 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-20 ##label MAT COMMENT This protein is an antibiotic peptide that inhibits growth !1of various fungi and bacteria. KEYWORDS unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,3,5,6,8,10,12,13, !$16,17 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$20 #modified_site leucinol #status experimental SUMMARY #length 20 #molecular-weight 2150 #checksum 7411 SEQUENCE /// ENTRY PC2140 #type complete TITLE hypelcin B-II - fungus (Hypocrea peltata) ORGANISM #formal_name Hypocrea peltata DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 21-Jul-1995 ACCESSIONS PC2140 REFERENCE PC2139 !$#authors Matsuura, K.; Shima, O.; Takeda, Y.; Takaishi, Y.; Nagaoka, !1Y.; Fujita, T. !$#journal Chem. Pharm. Bull. (1994) 42:1063-1069 !$#title Fungal metabolites. XV. Primary structures of antibiotic !1peptides, hypelcins B-I, B-II, B-III, B-IV and B-V, from !1Hypocrea peltata. Application of electrospray mass !1spectrometry and electrospray mass spectrometry/mass !1spectrometry. !$#accession PC2140 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-20 ##label MAT COMMENT This protein is an antibiotic peptide that inhibits growth !1of various fungi and bacteria. KEYWORDS unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,3,5,8,10,12,13, !$16,17 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$20 #modified_site leucinol #status experimental SUMMARY #length 20 #molecular-weight 2111 #checksum 7273 SEQUENCE /// ENTRY PC2141 #type complete TITLE hypelcin B-III - fungus (Hypocrea peltata) ORGANISM #formal_name Hypocrea peltata DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 21-Jul-1995 ACCESSIONS PC2141 REFERENCE PC2139 !$#authors Matsuura, K.; Shima, O.; Takeda, Y.; Takaishi, Y.; Nagaoka, !1Y.; Fujita, T. !$#journal Chem. Pharm. Bull. (1994) 42:1063-1069 !$#title Fungal metabolites. XV. Primary structures of antibiotic !1peptides, hypelcins B-I, B-II, B-III, B-IV and B-V, from !1Hypocrea peltata. Application of electrospray mass !1spectrometry and electrospray mass spectrometry/mass !1spectrometry. !$#accession PC2141 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-20 ##label MAT COMMENT This protein is an antibiotic peptide that inhibits growth !1of various fungi and bacteria. KEYWORDS unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,3,5,6,8,10,12,13, !$16 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$17 #modified_site 2-amino-2-methylbutanoic acid #status !8experimental\ !$20 #modified_site leucinol #status experimental SUMMARY #length 20 #molecular-weight 2150 #checksum 7411 SEQUENCE /// ENTRY PC2142 #type complete TITLE hypelcin B-IV - fungus (Hypocrea peltata) ORGANISM #formal_name Hypocrea peltata DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 21-Jul-1995 ACCESSIONS PC2142 REFERENCE PC2139 !$#authors Matsuura, K.; Shima, O.; Takeda, Y.; Takaishi, Y.; Nagaoka, !1Y.; Fujita, T. !$#journal Chem. Pharm. Bull. (1994) 42:1063-1069 !$#title Fungal metabolites. XV. Primary structures of antibiotic !1peptides, hypelcins B-I, B-II, B-III, B-IV and B-V, from !1Hypocrea peltata. Application of electrospray mass !1spectrometry and electrospray mass spectrometry/mass !1spectrometry. !$#accession PC2142 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-20 ##label MAT COMMENT This protein is an antibiotic peptide that inhibits growth !1of various fungi and bacteria. KEYWORDS unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,3,5,6,8,10,12,13, !$16,17 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$20 #modified_site leucinol #status experimental SUMMARY #length 20 #molecular-weight 2150 #checksum 7384 SEQUENCE /// ENTRY PC2143 #type complete TITLE hypelcin B-V - fungus (Hypocrea peltata) ORGANISM #formal_name Hypocrea peltata DATE 21-Jul-1995 #sequence_revision 21-Jul-1995 #text_change 21-Jul-1995 ACCESSIONS PC2143 REFERENCE PC2139 !$#authors Matsuura, K.; Shima, O.; Takeda, Y.; Takaishi, Y.; Nagaoka, !1Y.; Fujita, T. !$#journal Chem. Pharm. Bull. (1994) 42:1063-1069 !$#title Fungal metabolites. XV. Primary structures of antibiotic !1peptides, hypelcins B-I, B-II, B-III, B-IV and B-V, from !1Hypocrea peltata. Application of electrospray mass !1spectrometry and electrospray mass spectrometry/mass !1spectrometry. !$#accession PC2143 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-20 ##label MAT COMMENT This protein is an antibiotic peptide that inhibits growth !1of various fungi and bacteria. KEYWORDS unencoded polypeptide FEATURE !$1 #modified_site acetylated amino end #status !8experimental\ !$1,3,5,6,8,10,12,13, !$16,17 #modified_site 2-amino-2-methylpropanoic acid #status !8experimental\ !$20 #modified_site isoleucinol #status experimental SUMMARY #length 20 #molecular-weight 2150 #checksum 7411 SEQUENCE /// ENTRY D55066 #type complete TITLE probable tyrosine decarboxylase (EC 4.1.1.25) 4 pseudogene - opium poppy ORGANISM #formal_name Papaver somniferum #common_name opium poppy DATE 08-Jul-1995 #sequence_revision 11-Aug-1995 #text_change 11-Aug-1995 ACCESSIONS D55066 REFERENCE A55066 !$#authors Facchini, P.J.; De Luca, V. !$#journal J. Biol. Chem. (1994) 269:26684-26690 !$#title Differential and tissue-specific expression of a gene family !1for tyrosine/dopa decarboxylase in opium poppy. !$#cross-references MUID:95014524; PMID:7929401 !$#accession D55066 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-523 ##label FAC !'##cross-references GB:U08600 GENETICS !$#gene TYDC4 KEYWORDS pseudogene FEATURE !$56 #region ochre stop codon SUMMARY #length 523 #molecular-weight 57715 #checksum 1326 SEQUENCE /// ENTRY A47271 #type fragment TITLE nitrophenyl phosphonate-specific antibody 48G7 heavy chain VDJ - synthetic (fragment) ORGANISM #formal_name synthetic #note Mus musculus (house mouse) gene engineered and expressed in Escherichia coli DATE 21-Sep-1993 #sequence_revision 11-Aug-1995 #text_change 11-Aug-1995 ACCESSIONS A47271 REFERENCE A47271 !$#authors Lesley, S.A.; Patten, P.A.; Schultz, P.G. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1993) 90:1160-1165 !$#title A genetic approach to the generation of antibodies with !1enhanced catalytic activities. !$#cross-references MUID:93165660; PMID:8094556 !$#accession A47271 !'##molecule_type DNA; protein !'##residues 1-114 ##label LES !'##note sequence extracted from NCBI backbone (NCBIN:124854, !1NCBIP:124855) !'##note parts of this sequence were determined by protein sequencing FEATURE !$22-96 #disulfide_bonds #status predicted SUMMARY #length 114 #checksum 7733 SEQUENCE /// ENTRY B47271 #type fragment TITLE nitrophenyl phosphonate-specific antibody 48G7 light chain VJ - synthetic (fragment) ORGANISM #formal_name synthetic #note Mus musculus (house mouse) gene engineered and expressed in Escherichia coli DATE 21-Sep-1993 #sequence_revision 11-Aug-1995 #text_change 11-Aug-1995 ACCESSIONS B47271 REFERENCE A47271 !$#authors Lesley, S.A.; Patten, P.A.; Schultz, P.G. !$#journal Proc. Natl. Acad. Sci. U.S.A. (1993) 90:1160-1165 !$#title A genetic approach to the generation of antibodies with !1enhanced catalytic activities. !$#cross-references MUID:93165660; PMID:8094556 !$#accession B47271 !'##molecule_type DNA; protein !'##residues 1-108 ##label LES !'##note sequence extracted from NCBI backbone (NCBIN:124856, !1NCBIP:124859) !'##note parts of this sequence were determined by protein sequencing FEATURE !$24-89 #disulfide_bonds #status predicted SUMMARY #length 108 #checksum 9036 SEQUENCE /// ENTRY S43173 #type complete TITLE probable serine proteinase (EC 3.4.21.-) pseudogene - mouse ORGANISM #formal_name Mus musculus #common_name house mouse DATE 06-Feb-1995 #sequence_revision 17-Aug-1995 #text_change 17-Aug-1995 ACCESSIONS S43173 REFERENCE S43172 !$#authors Huang, R.; Hellman, L.T. !$#submission submitted to the EMBL Data Library, March 1994 !$#description Genes for mast cell serine proteases and their molecular !1evolution. !$#accession S43173 !'##status conceptual translation of pseudogene !'##molecule_type mRNA !'##residues 1-44 ##label HUA !'##cross-references EMBL:X78543 !'##experimental_source strain Leaden A1 F1, cell line MTC (mast cell !1tumor) GENETICS !$#gene MCP-y; MMCP-Y1 KEYWORDS pseudogene SUMMARY #length 44 #molecular-weight 4664 #checksum 5055 SEQUENCE /// ENTRY JC2287 #type complete TITLE theonellapeptolide IId - marine sponge (Theonella swinhoei) ORGANISM #formal_name Theonella swinhoei DATE 12-Sep-1995 #sequence_revision 13-Sep-1995 #text_change 13-Sep-1995 ACCESSIONS JC2287 REFERENCE JC2287 !$#authors Kobayashi, M.; Kanzaki, K.; Katayama, S.; Ohashi, K.; Okada, !1H.; Ikegami, S.; Kitagawa, I. !$#journal Chem. Pharm. Bull. (1994) 42:1410-1415 !$#title Marine natural products. XXXIII. Theonellapeptolide IId, a !1new tridecapeptide lactone from the Okinawan marine sponge !1Theonella swinhoei. !$#accession JC2287 !'##status unencoded polypeptide !'##molecule_type protein !'##residues 1-13 ##label KOB KEYWORDS unencoded polypeptide FEATURE !$1 #modified_site 2-methoxyacetylated amino end (Val) !8#status experimental\ !$2 #modified_site N-methyl-D-leucine (Leu) #status !8experimental\ !$3-13 #cross-link ester carboxyl end (Thr-Ile) #status !8experimental\ !$4,7,11 #modified_site beta-alanine #status experimental\ !$5,12 #modified_site D-leucine (Leu) #status experimental\ !$6 #modified_site N-methyl-L-isoleucine (Ile) #status !8experimental\ !$8 #modified_site D-allo-isoleucine (Ile) #status !8experimental\ !$9 #modified_site N-methyl-L-valine (Val) #status !8experimental\ !$13 #modified_site N-methyl-D-allo-isoleucine (Ile) !8#status experimental SUMMARY #length 13 #molecular-weight 1398 #checksum 7113 SEQUENCE /// ENTRY B27292 #type complete TITLE probable ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain pseudogene - common tobacco ORGANISM #formal_name Nicotiana tabacum #common_name common tobacco DATE 12-Sep-1995 #sequence_revision 13-Sep-1995 #text_change 13-Sep-1995 ACCESSIONS B27292 REFERENCE A27292 !$#authors O'Neal, J.K.; Pokalsky, A.R.; Kiehne, K.L.; Shewmaker, C.K. !$#journal Nucleic Acids Res. (1987) 15:8661-8677 !$#title Isolation of tobacco SSU genes: characterization of a !1transcriptionally active pseudogene. !$#cross-references MUID:88067689; PMID:3684569 !$#accession B27292 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-167 ##label ONE !'##cross-references GB:M32420 !'##note this pseudogene contains introns and is transcriptionally !1active, but contains an ochre stop codon within the transit !1peptide GENETICS !$#introns 60/3; 105/3 KEYWORDS Calvin cycle; carbon dioxide fixation; carbon-carbon lyase; !1carboxy-lyase; chloroplast; monooxygenase; photorespiration; !1pseudogene FEATURE !$57 #region ochre stop codon SUMMARY #length 167 #molecular-weight 18537 #checksum 3371 SEQUENCE /// ENTRY A47498 #type complete TITLE seminal ribonuclease (EC 3.1.27.5) - synthetic ORGANISM #formal_name synthetic #note Bos primigenius taurus (cattle) gene engineered and expressed in Escherichia coli DATE 16-Feb-1994 #sequence_revision 30-Nov-1995 #text_change 30-Nov-1995 ACCESSIONS A47498 REFERENCE A47498 !$#authors Kim, J.S.; Raines, R.T. !$#journal J. Biol. Chem. (1993) 268:17392-17396 !$#title Bovine seminal ribonuclease produced from a synthetic gene. !$#cross-references MUID:93352527; PMID:7688724 !$#accession A47498 !'##molecule_type nucleic acid !'##residues 1-125 ##label KIM !'##note sequence extracted from NCBI backbone (NCBIN:136293, !1NCBIP:136294) !'##note part of this sequence, including the amino end of the mature !1protein, was determined by protein sequencing KEYWORDS hydrolase FEATURE !$27-85,41-96,59-111, !$66-73 #disulfide_bonds #status predicted\ !$32,33 #disulfide_bonds interchain #status predicted SUMMARY #length 125 #molecular-weight 13742 #checksum 7431 SEQUENCE /// ENTRY A44282 #type fragment TITLE retrovirus-related pol polyprotein pseudogene - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 31-Dec-1993 #sequence_revision 04-Jan-1996 #text_change 04-Jan-1996 ACCESSIONS A44282 REFERENCE A44282 !$#authors Hirose, Y.; Takamatsu, M.; Harada, F. !$#journal Virology (1993) 192:52-61 !$#title Presence of env genes in members of the RTVL-H family of !1human endogenous retrovirus-like elements. !$#cross-references MUID:93297138; PMID:8517031 !$#accession A44282 !'##status conceptual translation of pseudogene !'##molecule_type mRNA !'##residues 1-848 ##label HIR !'##cross-references GB:D10083 KEYWORDS pseudogene FEATURE !$45 #region opal stop codon\ !$485 #region opal stop codon\ !$694 #region ochre stop codon\ !$815 #region opal stop codon\ !$827 #region ochre stop codon\ !$835 #region opal stop codon SUMMARY #length 848 #checksum 3407 SEQUENCE /// ENTRY S26485 #type complete TITLE cytochrome P450 21A/B mutant fusion protein - human ALTERNATE_NAMES steroid 21-monooxygenase ORGANISM #formal_name Homo sapiens #common_name man DATE 06-Jan-1995 #sequence_revision 17-Aug-1995 #text_change 15-Feb-1996 ACCESSIONS S26485; S29672 REFERENCE S26484 !$#authors Helmberg, A.; Kofler, R. !$#submission submitted to the EMBL Data Library, March 1991 !$#accession S26485 !'##molecule_type DNA !'##residues 1-97 ##label HEL !'##cross-references EMBL:X58901 !'##experimental_source leukocyte clone AGS 8-23 !'##note an unequal cross-over mutation of the CYP21P pseudogene and !1CYP21 gene in a congenital hyperplasia patient !$#accession S29672 !'##molecule_type DNA !'##residues 1-97 ##label HE2 !'##cross-references EMBL:X58908 GENETICS !$#gene CYP21P/CYP21 !$#map_position 6p21.3 !$#introns 68/1 KEYWORDS fusion protein SUMMARY #length 97 #molecular-weight 11069 #checksum 8350 SEQUENCE /// ENTRY S43383 #type complete TITLE bactericidal/permeability-increasing protein - synthetic ORGANISM #formal_name synthetic #note Homo sapiens (man) gene engineered and expressed in Escherichia coli DATE 20-Oct-1994 #sequence_revision 15-Feb-1996 #text_change 15-Feb-1996 ACCESSIONS S43383 REFERENCE S43383 !$#authors Qi, S.Y.; Li, Y.; O'Connor, C.D. !$#journal Biochem. J. (1994) 298:711-718 !$#title The region around residue 115 of human bactericidal/ !1permeability-increasing protein is not involved in !1lipopolysaccharide binding or bactericidal activity. !1Chemical synthesis and expression of a gene coding for the !1active domain and characterization of recombinant proteins. !$#accession S43383 !'##molecule_type DNA !'##residues 1-250 ##label QIS SUMMARY #length 250 #molecular-weight 27548 #checksum 4657 SEQUENCE /// ENTRY S15793 #type complete TITLE pseudogene ZK637.6 - Caenorhabditis elegans ORGANISM #formal_name Caenorhabditis elegans DATE 06-Jan-1995 #sequence_revision 15-Feb-1996 #text_change 15-Feb-1996 ACCESSIONS S15793 REFERENCE S15786 !$#authors Craxton, M.; Ainscough, R.; Coulson, A.; Dear, S.; Du, Z.; !1Durbin, R.; Green, P.; Halloran, N.; Hawkins, T.; Hillier, !1L.; Kozono, Y.; Lee, C.; Lutterbach, B.; Metzstein, M.; Qiu, !1Q.; Shownkeen, R.; Staden, R.; Sulston, J.; Thierry-Mieg, !1J.; Thomas, K.; Waterston, R.; Wilson, R. !$#submission submitted to the EMBL Data Library, May 1991 !$#accession S15793 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-67 ##label CRA !'##cross-references EMBL:Z11115 GENETICS !$#map_position III !$#note cosmid ZK637 KEYWORDS pseudogene SUMMARY #length 67 #molecular-weight 7239 #checksum 104 SEQUENCE /// ENTRY S52305 #type complete TITLE heat shock transcription factor 33 pseudogene - soybean ORGANISM #formal_name Glycine max #common_name soybean DATE 08-May-1995 #sequence_revision 18-Jan-1996 #text_change 17-Mar-1996 ACCESSIONS S52305 REFERENCE S52303 !$#authors Czarnecka-Verner, E.; Yuan, C.X.; Fox, P.C.; Gurley, W.B. !$#submission submitted to the EMBL Data Library, December 1994 !$#description Isolation and characterization of six heat shock !1transcription factor cDNA clones from soybean. !$#accession S52305 !'##status conceptual translation of pseudogene !'##molecule_type mRNA !'##residues 1-142 ##label CZA !'##cross-references EMBL:Z46954 KEYWORDS pseudogene SUMMARY #length 142 #molecular-weight 15843 #checksum 2624 SEQUENCE /// ENTRY A32761 #type fragment TITLE hypothetical Alzheimer's disease amyloid beta protein, Alu-containing clone - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 29-Jan-1990 #sequence_revision 10-Apr-1996 #text_change 10-Apr-1996 ACCESSIONS A32761 REFERENCE A32761 !$#authors de Sauvage, F.; Octave, J.N. !$#journal Science (1989) 245:651-653 !$#title A novel mRNA of the A4 amyloid precursor gene coding for a !1possibly secreted protein. !$#cross-references MUID:89346754; PMID:2569763 !$#accession A32761 !'##molecule_type mRNA !'##residues 1-484 ##label DES !'##cross-references GB:M28373 !'##note the authors translated the codon ATG for residue 433 as Leu COMMENT This is the hypothetical translation of a sequence believed !1to contain cloning artifacts. KEYWORDS cloning artifact SUMMARY #length 484 #checksum 1587 SEQUENCE /// ENTRY S01442 #type fragment TITLE hypothetical Alzheimer's disease amyloid beta protein, inverted repeat-containing clone - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 18-Oct-1989 #sequence_revision 10-Apr-1996 #text_change 10-Apr-1996 ACCESSIONS S01442 REFERENCE S01442 !$#authors Mita, S.; Sadlock, J.; Herbert, J.; Schon, E.A. !$#journal Nucleic Acids Res. (1988) 16:9351 !$#title A cDNA specifying the human amyloid beta precursor protein !1(ABPP) encodes a 95-kDa polypeptide. !$#cross-references MUID:89016647; PMID:3140222 !$#accession S01442 !'##molecule_type mRNA !'##residues 1-83 ##label MIT !'##cross-references EMBL:M35675; EMBL:X12613 REFERENCE A57866 !$#authors Mita, S.; Sadlock, J.; Herbert, J.; Schon, E.A. !$#journal Nucleic Acids Res. (1988) 16:11402 !$#contents annotation; erratum !$#note what was originally thought to be an alternative initiation !1site was found to be in an inverted repeat cloning artifact COMMENT This is the hypothetical translation of a sequence believed !1to contain cloning artifacts. KEYWORDS cloning artifact SUMMARY #length 83 #checksum 49 SEQUENCE /// ENTRY G47070 #type complete TITLE hypothetical tyvelose epimerase homolog - Yersinia pseudotuberculosis ALTERNATE_NAMES rfb ORF 6.3; rfb ORF 6.8 ORGANISM #formal_name Yersinia pseudotuberculosis DATE 21-Sep-1993 #sequence_revision 03-May-1996 #text_change 03-May-1996 ACCESSIONS G47070 REFERENCE A47070 !$#authors Kessler, A.C.; Haase, A.; Reeves, P.R. !$#journal J. Bacteriol. (1993) 175:1412-1422 !$#title Molecular analysis of the 3,6-dideoxyhexose pathway genes of !1Yersinia pseudotuberculosis serogroup IIA. !$#cross-references MUID:93186709; PMID:8444803 !$#accession G47070 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-206 ##label KES !'##cross-references GB:L01777 !'##experimental_source serogroup IIA, M85 !'##note sequence extracted from NCBI backbone (NCBIN:126815, !1NCBIP:126835) GENETICS !$#gene rfbE KEYWORDS pseudogene SUMMARY #length 206 #molecular-weight 23493 #checksum 9131 SEQUENCE /// ENTRY B24847 #type fragment TITLE hypothetical bcr (breakpoint cluster region) mutant protein - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 05-Oct-1988 #sequence_revision 03-May-1996 #text_change 03-May-1996 ACCESSIONS B24847 REFERENCE A93088 !$#authors Grosveld, G.; Verwoerd, T.; van Agthoven, T.; de Klein, A.; !1Ramachandran, K.L.; Heisterkamp, N.; Stam, K.; Groffen, J. !$#journal Mol. Cell. Biol. (1986) 6:607-616 !$#title The chronic myelocytic cell line K562 contains a breakpoint !1in bcr and produces a chimeric bcr/c-abl transcript. !$#cross-references MUID:87064346; PMID:3023859 !$#accession B24847 !'##molecule_type mRNA !'##residues 1-85 ##label GRO !'##cross-references GB:M19695 COMMENT This sequence is the hypothetical translation of what is !1thought to be a nonfunctional, alternatively spliced, mutant !1sequence. GENETICS !$#gene GDB:BCR !$#map_position 22q11 KEYWORDS alternative splicing; breakpoint cluster region SUMMARY #length 85 #checksum 9854 SEQUENCE /// ENTRY I36946 #type fragment TITLE haptoglobin pseudogene Hpr - chimpanzee (fragment) ORGANISM #formal_name Pan troglodytes #common_name chimpanzee DATE 15-Feb-1996 #sequence_revision 15-Feb-1996 #text_change 31-May-1996 ACCESSIONS I36946 REFERENCE I36945 !$#authors McEvoy, S.; Maeda, N. !$#journal J. Biol. Chem. (1988) 263:15740-15747 !$#title Complex events in the evolution of the haptoglobin gene !1cluster in primates. !$#cross-references MUID:89008487; PMID:3170608 !$#accession I36946 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-42 ##label RES !'##cross-references GB:M20761; GB:J04045 GENETICS !$#gene Hpr KEYWORDS pseudogene SUMMARY #length 42 #checksum 9613 SEQUENCE /// ENTRY S58111 #type complete TITLE chloramphenicol O-acetyltransferase (EC 2.3.1.28) - synthetic ORGANISM #formal_name synthetic #note gene engineered and expressed in Escherichia coli K12 DATE 13-Jan-1996 #sequence_revision 22-Aug-1996 #text_change 22-Aug-1996 ACCESSIONS S58111 REFERENCE A57992 !$#authors Kahrs, A.F.; Odenbreit, S.; Schmitt, W.; Heuermann, D.; !1Meyer, T.F.; Haas, R. !$#journal Gene (1995) 167:53-57 !$#title An improved TnMax mini-transposon system suitable for !1sequencing, shuttle mutagenesis and gene fusions. !$#cross-references MUID:96144248; PMID:8566811 !$#accession S58111 !'##status not compared with conceptual translation !'##molecule_type DNA !'##residues 1-219 ##label HAA !'##cross-references EMBL:Z50122; NID:g938036 !'##note submitted to the EMBL Data Library, July 1995 KEYWORDS acyltransferase SUMMARY #length 219 #molecular-weight 25663 #checksum 7746 SEQUENCE /// ENTRY S12496 #type complete TITLE hypothetical protein RAD1 5' region - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 30-Jun-1991 #sequence_revision 05-Sep-1996 #text_change 05-Sep-1996 ACCESSIONS S12496 REFERENCE S05878 !$#authors Yang, E.; Friedberg, E.C. !$#journal Mol. Cell. Biol. (1984) 4:2161-2169 !$#title Molecular cloning and nucleotide sequence analysis of the !1Saccharomyces cerevisiae RAD1 gene. !$#cross-references MUID:85061207; PMID:6095044 !$#accession S12496 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-81 ##label YAN !'##cross-references EMBL:K02070; NID:g172317 !'##note the authors translated the codon GAT for residue 74 as Asn COMMENT This sequence is an open reading frame present from bp 130 !1to 375. There is no evidence that this sequence is !1expressed. GENETICS !$#map_position 16L KEYWORDS pseudogene SUMMARY #length 81 #molecular-weight 8590 #checksum 9996 SEQUENCE /// ENTRY S31567 #type complete TITLE hypothetical protein YGL029 - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 28-May-1993 #sequence_revision 05-Sep-1996 #text_change 05-Sep-1996 ACCESSIONS S31567 REFERENCE S15040 !$#authors Chen, W.; Balzi, E.; Capieaux, E.; Choder, M.; Goffeau, A. !$#journal Yeast (1991) 7:287-299 !$#title The DNA sequencing of the 17 kb HindIII fragment spanning !1the LEU1 and ATE1 loci on chromosome VII from Saccharomyces !1cerevisiae reveals the PDR6 gene, a new member of the !1genetic network controlling pleiotropic drug resistance. !$#cross-references MUID:91353083; PMID:1882553 !$#accession S31567 !'##status translation not shown; conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-88 ##label CHE !'##cross-references GB:S58126; NID:g234321 COMMENT There is no evidence that this sequence is expressed. KEYWORDS pseudogene SUMMARY #length 88 #molecular-weight 9881 #checksum 5253 SEQUENCE /// ENTRY S07693 #type complete TITLE hypothetical protein C - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 31-Mar-1991 #sequence_revision 05-Sep-1996 #text_change 05-Sep-1996 ACCESSIONS S07693 REFERENCE S07692 !$#authors Toh-e, A.; Sahashi, Y. !$#journal Yeast (1985) 1:159-171 !$#title The PET18 locus of Saccharomyces cerevisiae: a complex locus !1containing multiple genes. !$#cross-references MUID:89131254; PMID:3916862 !$#accession S07693 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-67 ##label TOH COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 3R KEYWORDS pseudogene SUMMARY #length 67 #molecular-weight 7502 #checksum 1434 SEQUENCE /// ENTRY S07696 #type complete TITLE hypothetical protein E (MAK31 5' region) - yeast (Saccharomyces cerevisiae) ORGANISM #formal_name Saccharomyces cerevisiae DATE 31-Mar-1991 #sequence_revision 05-Sep-1996 #text_change 05-Sep-1996 ACCESSIONS S07696 REFERENCE S07692 !$#authors Toh-e, A.; Sahashi, Y. !$#journal Yeast (1985) 1:159-171 !$#title The PET18 locus of Saccharomyces cerevisiae: a complex locus !1containing multiple genes. !$#cross-references MUID:89131254; PMID:3916862 !$#accession S07696 !'##status conceptual translation of pseudogene !'##molecule_type DNA !'##residues 1-78 ##label TOH COMMENT There is no evidence that this sequence is expressed. GENETICS !$#map_position 3R KEYWORDS pseudogene SUMMARY #length 78 #molecular-weight 9179 #checksum 4264 SEQUENCE /// ENTRY A27071 #type complete TITLE cytoplasmic male sterility-associated mutant fusion protein - garden petunia mitochondrion ALTERNATE_NAMES CMS-associated protein ORGANISM #formal_name mitochondrion Petunia x hybrida #common_name garden petunia DATE 19-Nov-1988 #sequence_revision 24-Oct-1996 #text_change 24-Oct-1996 ACCESSIONS A27071 REFERENCE A27071 !$#authors Young, E.G.; Hanson, M.R. !$#journal Cell (1987) 50:41-49 !$#title A fused mitochondrial gene associated with cytoplasmic male !1sterility is developmentally regulated. !$#cross-references MUID:87244322; PMID:2885095 !$#accession A27071 !'##molecule_type DNA !'##residues 1-354 ##label YOU !'##cross-references EMBL:M16770; NID:g1256946 !'##note the authors translated the codon CTT for residue 94 as Pro, GGA !1for residue 224 as Ala, and CTT for residue 234 as Val !'##note the authors confirm that mRNA editing in plant mitochondria !1changes the Arg codon CGG for residues 90, 200, 322, and 334 !1to the Trp codon UGG COMMENT This sequence is the chimeric product of a fusion mutation. GENETICS !$#genome mitochondrion KEYWORDS fusion protein; mitochondrion; tandem repeat FEATURE !$1-35 #region H+-transporting ATP synthase lipid-binding !8protein\ !$40-186 #region cytochrome-c oxidase chain II\ !$166-195 #region 10-residue repeats (P-S-L-G-V-K-G-D-A-V)\ !$243-314 #region 18-residue repeats (P-E-G-[ND] !8-P-Q-A-L-P-E-D-G-Q-F-H-A-[VI]-A) SUMMARY #length 354 #molecular-weight 37881 #checksum 1228 SEQUENCE /// ENTRY JQ0818 #type complete TITLE hypothetical bombyxin bbxC3 pseudogene - silkworm ORGANISM #formal_name Bombyx mori #common_name silkworm DATE 21-Nov-1993 #sequence_revision 31-Dec-1996 #text_change 31-Dec-1996 ACCESSIONS JQ0818 REFERENCE JQ0814 !$#authors Iwami, M. !$#submission submitted to JIPID, December 1990 !$#accession JQ0818 !'##status preliminary; conceptual translation of pseudogene !'##molecule_type nucleic acid !'##residues 1-26 ##label IWA KEYWORDS pseudogene SUMMARY #length 26 #molecular-weight 2778 #checksum 7519 SEQUENCE /// ENTRY JQ0819 #type complete TITLE hypothetical bombyxin bbxC4 pseudogene - silkworm ORGANISM #formal_name Bombyx mori #common_name silkworm DATE 21-Nov-1993 #sequence_revision 31-Dec-1996 #text_change 31-Dec-1996 ACCESSIONS JQ0819 REFERENCE JQ0814 !$#authors Iwami, M. !$#submission submitted to JIPID, December 1990 !$#accession JQ0819 !'##status preliminary; conceptual translation of pseudogene !'##molecule_type nucleic acid !'##residues 1-26 ##label IWA KEYWORDS pseudogene SUMMARY #length 26 #molecular-weight 2752 #checksum 7189 SEQUENCE /// ENTRY JQ0820 #type complete TITLE hypothetical bombesin bbxC5 pseudogene - silkworm ORGANISM #formal_name Bombyx mori #common_name silkworm DATE 21-Nov-1993 #sequence_revision 31-Dec-1996 #text_change 31-Dec-1996 ACCESSIONS JQ0820 REFERENCE JQ0814 !$#authors Iwami, M. !$#submission submitted to JIPID, December 1990 !$#accession JQ0820 !'##status preliminary; conceptual translation of pseudogene !'##molecule_type nucleic acid !'##residues 1-26 ##label IWA KEYWORDS pseudogene SUMMARY #length 26 #molecular-weight 2770 #checksum 7209 SEQUENCE /// ENTRY JQ0821 #type complete TITLE hypothetical bombesin bbxC6 pseudogene - silkworm ORGANISM #formal_name Bombyx mori #common_name silkworm DATE 21-Nov-1993 #sequence_revision 31-Dec-1996 #text_change 31-Dec-1996 ACCESSIONS JQ0821 REFERENCE JQ0814 !$#authors Iwami, M. !$#submission submitted to JIPID, December 1990 !$#accession JQ0821 !'##status preliminary; conceptual translation of pseudogene !'##molecule_type nucleic acid !'##residues 1-26 ##label IWA KEYWORDS pseudogene SUMMARY #length 26 #molecular-weight 2770 #checksum 7209 SEQUENCE /// ENTRY JS0486 #type complete TITLE hypothetical cytochrome-c oxidase (EC 1.9.3.1) chain IV pseudogene - chimpanzee ORGANISM #formal_name Pan troglodytes #common_name chimpanzee DATE 21-Nov-1993 #sequence_revision 31-Dec-1996 #text_change 31-Dec-1996 ACCESSIONS JS0486 REFERENCE JS0486 !$#authors Lomax, M.I.; Welch, M.D.; Darras, B.T.; Francke, U.; !1Grossman, L.I. !$#journal Gene (1990) 86:209-216 !$#title Novel use of a chimpanzee pseudogene for chromosomal mapping !1of human cytochrome c oxidase subunit IV. !$#cross-references MUID:90215300; PMID:2157630 !$#accession JS0486 !'##status preliminary; conceptual translation of pseudogene !'##molecule_type nucleic acid !'##residues 1-149 ##label LOM KEYWORDS pseudogene SUMMARY #length 149 #molecular-weight 17173 #checksum 1416 SEQUENCE /// ENTRY I52605 #type fragment TITLE hypothetical MLL/ELL mutant fusion protein - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 21-Feb-1997 #sequence_revision 21-Feb-1997 #text_change 21-Feb-1997 ACCESSIONS I52605 REFERENCE I52605 !$#authors Mitani, K.; Kanda, Y.; Ogawa, S.; Tanaka, T.; Inazawa, J.; !1Yazaki, Y.; Hirai, H. !$#journal Blood (1995) 85:2017-2024 !$#title Cloning of several species of MLL/MEN chimeric cDNAs in !1myeloid leukemia with t(11;19)(q23;p13.1) translocation. !$#cross-references MUID:95235023; PMID:7718874 !$#accession I52605 !'##status preliminary; translated from GB/EMBL/DDBJ !'##molecule_type mRNA !'##residues 1-30 ##label RES !'##cross-references GB:S77878; NID:g998550 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene MLL/ELL; MLL/MEN !$#map_position 11q23/19p13.1 KEYWORDS fusion protein; leukemia SUMMARY #length 30 #checksum 5860 SEQUENCE /// ENTRY I52725 #type fragment TITLE hypothetical BCL2/IGHV mutant fusion protein - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 21-Feb-1997 #sequence_revision 21-Feb-1997 #text_change 21-Feb-1997 ACCESSIONS I52725 REFERENCE I52725 !$#authors Ji, W.; Qu, G.Z.; Ye, P.; Zhang, X.Y.; Halabi, S.; Ehrlich, !1M. !$#journal Cancer Res. (1995) 55:2876-2882 !$#title Frequent detection of bcl-2/JH translocations in human blood !1and organ samples by a quantitative polymerase chain !1reaction assay. !$#cross-references MUID:95316863; PMID:7796416 !$#accession I52725 !'##status preliminary; translated from GB/EMBL/DDBJ !'##molecule_type DNA !'##residues 1-27 ##label RES !'##cross-references GB:S78520; NID:g1042092 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene BCL2/IGHV@; BCL2/JH !$#map_position 18q21.33 KEYWORDS fusion protein SUMMARY #length 27 #checksum 238 SEQUENCE /// ENTRY I54078 #type fragment TITLE hypothetical PML/RARA mutant fusion protein - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 21-Feb-1997 #sequence_revision 21-Feb-1997 #text_change 21-Feb-1997 ACCESSIONS I54078 REFERENCE I54078 !$#authors Yoshida, H.; Naoe, T.; Fukutani, H.; Kiyoi, H.; Kubo, K.; !1Ohno, R. !$#journal Genes Chromosomes Cancer (1995) 12:37-44 !$#title Analysis of the joining sequences of the t(15;17) !1translocation in human acute promyelocytic leukemia: !1sequence non-specific recombination between the PML and RARA !1genes within identical short stretches. !$#cross-references MUID:95194921; PMID:7534109 !$#accession I54078 !'##status preliminary; translated from GB/EMBL/DDBJ !'##molecule_type mRNA !'##residues 1-18 ##label RES !'##cross-references GB:S76369; NID:g913695 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene PML/RARA !$#map_position 15q22/17q12 KEYWORDS fusion protein; leukemia SUMMARY #length 18 #checksum 2708 SEQUENCE /// ENTRY S37162 #type complete TITLE phosphoribosylaminoimidazolesuccinocarboxamide synthase (EC 6.3.2.6) mutant - yeast (Candida maltosa) ORGANISM #formal_name Candida maltosa DATE 06-Jan-1994 #sequence_revision 17-Mar-1997 #text_change 24-Apr-1997 ACCESSIONS S37162; S55294 REFERENCE S55291 !$#authors Becher, D.; Schulze, S.; Kasueske, A.; Stoll, R.; Wedler, !1H.; Oliver, S.G. !$#journal Mol. Gen. Genet. (1995) 247:591-602 !$#title Chromosome polymorphisms close to the cm-ADE1 locus of !1Candida maltosa. !$#cross-references MUID:95327056; PMID:7603439 !$#accession S37162 !'##status translation not shown !'##molecule_type DNA !'##residues 1-82 ##label BEC !'##cross-references EMBL:X74787; NID:g455539 !'##note submitted to the EMBL Data Library, August 1993 KEYWORDS ligase SUMMARY #length 82 #molecular-weight 9334 #checksum 176 SEQUENCE /// ENTRY S36174 #type fragment TITLE RNA binding protein/transcription factor ATF-1 mutant fusion protein - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 07-Oct-1994 #sequence_revision 30-Nov-1995 #text_change 22-May-1997 ACCESSIONS S36174 REFERENCE S36174 !$#authors Zucman, J.; Delattre, O.; Desmaze, C.; Epstein, A.L.; !1Stenman, G.; Speleman, F.; Fletchers, C.D.M.; Aurias, A.; !1Thomas, G. !$#journal Nature Genet. (1993) 4:341-345 !$#title EWS and ATF-1 gene fusion induced by t(12;22) translocation !1in malignant melanoma of soft parts. !$#accession S36174 !'##molecule_type mRNA !'##residues 1-295 ##label ZUC COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene EWSR1/ATF1 !$#map_position 22q12.1/12q13 KEYWORDS fusion protein SUMMARY #length 295 #checksum 6570 SEQUENCE /// ENTRY C34734 #type complete TITLE transcription factor 3/homeotic protein prl mutant fusion protein II - human ALTERNATE_NAMES E2A/prl mutant fusion protein II; E2A-Prl mutant fusion protein clone KJ9 ORGANISM #formal_name Homo sapiens #common_name man DATE 13-Jul-1990 #sequence_revision 17-Nov-1995 #text_change 22-May-1997 ACCESSIONS C34734; B34733 REFERENCE A34734 !$#authors Kamps, M.P.; Murre, C.; Sun, X.; Baltimore, D. !$#journal Cell (1990) 60:547-555 !$#title A new homeobox gene contributes the DNA binding domain of !1the t(1;19) translocation protein in pre-B ALL. !$#cross-references MUID:90150282; PMID:1967983 !$#accession C34734 !'##status not compared with conceptual translation !'##molecule_type mRNA !'##residues 1-742 ##label KAM !'##cross-references GB:M31522; NID:g339894 REFERENCE A34733 !$#authors Nourse, J.; Mellentin, J.D.; Galili, N.; Wilkinson, J.; !1Stanbridge, E.; Smith, S.D.; Cleary, M.L. !$#journal Cell (1990) 60:535-545 !$#title Chromosomal translocation t(1;19) results in synthesis of a !1homeobox fusion mRNA that codes for a potential chimeric !1transcription factor. !$#cross-references MUID:90150281; PMID:1967982 !$#accession B34733 !'##molecule_type mRNA !'##residues 7-579,'DE',582-742 ##label NOU !'##cross-references GB:M31222; NID:g181905 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene TCF3/PBX1 KEYWORDS fusion protein SUMMARY #length 742 #molecular-weight 77270 #checksum 8037 SEQUENCE /// ENTRY B44264 #type fragment TITLE AF-4/ALL-1 clone 16 mutant fusion protein - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 10-Jun-1993 #sequence_revision 24-Oct-1996 #text_change 22-May-1997 ACCESSIONS B44264 REFERENCE A44264 !$#authors Gu, Y.; Nakamura, T.; Alder, H.; Prasad, R.; Canaani, O.; !1Cimino, G.; Croce, C.M.; Canaani, E. !$#journal Cell (1992) 71:701-708 !$#title The t(4;11) chromosome translocation of human acute !1leukemias fuses the ALL-1 gene, related to Drosophila !1trithorax, to the AF-4 gene. !$#cross-references MUID:93046668; PMID:1423625 !$#accession B44264 !'##status not compared with conceptual translation !'##molecule_type mRNA !'##residues 1-112 ##label GU1 !'##cross-references GB:L04731; NID:g339921 !'##experimental_source clone 16 !'##note sequence extracted from NCBI backbone (NCBIP:117781) COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene MLLT2/MLL; AF-4/ALL-1 !$#map_position 4q21-4q21/11q23-11q23 KEYWORDS fusion protein FEATURE !$1-63 #region AF-4 protein (fragment)\ !$64-112 #region ALL-1 protein (fragment) SUMMARY #length 112 #checksum 1137 SEQUENCE /// ENTRY C44264 #type fragment TITLE ALL-1/AF-4 clone 25 mutant fusion protein - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 10-Jun-1993 #sequence_revision 24-Oct-1996 #text_change 22-May-1997 ACCESSIONS C44264 REFERENCE A44264 !$#authors Gu, Y.; Nakamura, T.; Alder, H.; Prasad, R.; Canaani, O.; !1Cimino, G.; Croce, C.M.; Canaani, E. !$#journal Cell (1992) 71:701-708 !$#title The t(4;11) chromosome translocation of human acute !1leukemias fuses the ALL-1 gene, related to Drosophila !1trithorax, to the AF-4 gene. !$#cross-references MUID:93046668; PMID:1423625 !$#accession C44264 !'##status not compared with conceptual translation !'##molecule_type mRNA !'##residues 1-134 ##label GU1 !'##cross-references GB:L04731; NID:g339921 !'##experimental_source clone 25 !'##note sequence extracted from NCBI backbone (NCBIP:117783) COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene MLL/MLLT2; ALL-1/AF-4 !$#map_position 4q21-4q21/11q23-11q23 KEYWORDS fusion protein FEATURE !$1-44 #region ALL-1 protein (fragment)\ !$45-134 #region AF-4 protein (fragment) SUMMARY #length 134 #checksum 3493 SEQUENCE /// ENTRY I65366 #type fragment TITLE ALL-1/AF-4 mutant fusion protein - human (fragment) ORGANISM #formal_name Homo sapiens #common_name man DATE 04-Oct-1996 #sequence_revision 24-Oct-1996 #text_change 22-May-1997 ACCESSIONS I65366 REFERENCE I52578 !$#authors Biondi, A.; Rambaldi, A.; Rossi, V.; Elia, L.; Caslini, C.; !1Basso, G.; Battista, R.; Barbui, T.; Mandelli, F.; Masera, !1G. !$#journal Blood (1993) 82:2943-2947 !$#title Detection of ALL-1/AF4 fusion transcript by reverse !1transcription-polymerase chain reaction for diagnosis and !1monitoring of acute leukemias with the t(4;11) !1translocation. !$#cross-references MUID:94033501; PMID:8219184 !$#accession I65366 !'##status translated from GB/EMBL/DDBJ !'##molecule_type mRNA !'##residues 1-217 ##label RES !'##cross-references GB:S67825; NID:g460862 COMMENT This sequence is the chimeric product of a translocation !1mutation. GENETICS !$#gene MLL/MLLT2; ALL-1/AF-4 !$#map_position 4q21-4q21/11q23-11q23 KEYWORDS fusion protein FEATURE !$1-135 #region ALL-1 protein (fragment)\ !$136-217 #region AF-4 protein (fragment) SUMMARY #length 217 #checksum 4239 SEQUENCE /// ENTRY S49073 #type fragment TITLE frame shifted cytadherence accessory protein HMW3 - Mycoplasma pneumoniae (fragment) ALTERNATE_NAMES H+-transporting ATP synthase (EC 3.6.3.14) alpha chain (misidentification) ORGANISM #formal_name Mycoplasma pneumoniae DATE 28-Aug-1998 #sequence_revision 28-Aug-1998 #text_change 19-Apr-2002 ACCESSIONS S49073 REFERENCE S49059 !$#authors Proft, T.; Herrmann, R. !$#journal Mol. Microbiol. (1994) 13:337-348 !$#title Identification and characterization of hitherto unknown !1Mycoplasma pneumoniae proteins. !$#cross-references MUID:95075318; PMID:7984111 !$#accession S49073 !'##status nucleic acid sequence not shown; translation not shown !'##molecule_type DNA !'##residues 1-12 ##label PRO !'##cross-references EMBL:Z32665; NID:g474163; PIDN:CAA83583.1; !1PID:g581348 !'##experimental_source clone D2-16 !'##note the nucleotide sequence was submitted to the EMBL Data Library, !1April 1994 !'##note the GenBank entry MPDASA1, release 106.0, translates the ATC !1codon, 1 in this reading frame, as a Met initiation codon COMMENT The nucleotide sequence translated in an alternative reading !1frame is identical with cytadherence accessory protein HMW3 !1residues 217-227. See PIR:S73715. GENETICS !$#genetic_code SGC3 SUMMARY #length 12 #checksum 6162 SEQUENCE /// ENTRY A58725 #type complete TITLE virotoxin - destroying angel ORGANISM #formal_name Amanita virosa #common_name destroying angel DATE 20-Apr-2001 #sequence_revision 20-Apr-2001 #text_change 20-Apr-2001 ACCESSIONS A58725 REFERENCE A58725 !$#authors Faulstich, H.; Buku, A.; Bodenmueller, H.; Wieland, T. !$#journal Biochemistry (1980) 19:334-343 !$#title Virotoxins: actin-binding cyclic peptides of Amanita virosa !1mushrooms. !$#cross-references MUID:6893271; PMID:6893271 !$#accession A58725 !'##status preliminary !'##molecule_type protein !'##residues 1-7 ##label FAU KEYWORDS D-amino acid; hydroxyproline; toxin; unencoded polypeptide FEATURE !$1-7 #cross-link cyclopeptide (Val-Leu) #status !8experimental\ !$2 #modified_site D-threonine (Thr) #status !8experimental\ !$3 #modified_site D-serine (Ser) #status experimental\ !$4 #modified_site (3R,4S)-3,4-dihydroxyproline (Pro) !8#status experimental\ !$6 #modified_site 2'-methylsulfonyltryptophan (Trp) !8#status experimental\ !$7 #modified_site 4,5-dihydroxyleucine (Leu) #status !8experimental SUMMARY #length 7 #molecular-weight 773 #checksum 2202 SEQUENCE /// ENTRY S70439 #type complete TITLE pancreatic elastase I (allele HEL1-16) probable splice form I - human ORGANISM #formal_name Homo sapiens #common_name man DATE 03-Aug-1998 #sequence_revision 03-Aug-1998 #text_change 03-Feb-2003 ACCESSIONS S70439 REFERENCE A56615 !$#authors Kawashima, I.; Tani, T.; Mita-Honjo, K.; Shimoda-Takano, K.; !1Ohmine, T.; Furukawa, H.; Takiguchi, Y. !$#journal DNA Seq. (1992) 2:303-312 !$#title Genomic organization of the human homologue of the rat !1pancreatic elastase I gene. !$#cross-references MUID:92338395; PMID:1633328 !$#accession S70439 !'##status preliminary; not compared with conceptual translation !'##molecule_type DNA !'##residues 1-258 ##label KAW FEATURE !$19-251 #domain trypsin homology #label TRY SUMMARY #length 258 #molecular-weight 27870 #checksum 1151 SEQUENCE /// ENTRY A56615 #type complete TITLE probable pancreatic elastase (EC 3.4.21.36) pseudogene - human ALTERNATE_NAMES pancreatic elastase I homolog; pancreatic elastase I allele HEL1-16, splice form 2 ORGANISM #formal_name Homo sapiens #common_name man DATE 11-Aug-1995 #sequence_revision 17-Aug-1995 #text_change 14-Aug-1998 ACCESSIONS A56615; S70440 REFERENCE A56615 !$#authors Kawashima, I.; Tani, T.; Mita-Honjo, K.; Shimoda-Takano, K.; !1Ohmine, T.; Furukawa, H.; Takiguchi, Y. !$#journal DNA Seq. (1992) 2:303-312 !$#title Genomic organization of the human homologue of the rat !1pancreatic elastase I gene. !$#cross-references MUID:92338395; PMID:1633328 !$#accession A56615 !'##molecule_type DNA !'##residues 1-267 ##label KAW !'##cross-references EMBL:X62259; NID:g31246; EMBL:X62258; GB:S40923; !1NID:g31247; EMBL:X62252; GB:S40850; NID:g31248; EMBL:X62253; !1GB:S40852; NID:g31249; EMBL:X62254; GB:S40854; NID:g31250; !1EMBL:X62255; GB:S40856; NID:g31251; EMBL:X62256; GB:S40857; !1NID:g31252; EMBL:X62257; GB:S40859; NID:g31253 !'##note sequence extracted from NCBI backbone (NCBIN:109315, !1NCBIN:109317, NCBIN:109319, NCBIN:109321, NCBIN:109325, !1NCBIN:109328, NCBIN:109330, NCBIP:109335) COMMENT This apparently silent human homolog of pancreatic elastase !1I is a single-copy gene with eight putative exons. It has !1been shown not to be expressed in adult pancreas, but could !1encode a functional protein in some other tissue. GENETICS !$#gene GDB:ELA1 !$#map_position 12 KEYWORDS hydrolase; pseudogene; serine proteinase SUMMARY #length 267 #molecular-weight 28750 #checksum 6497 SEQUENCE ///