ACCNUM Descriptions of available values for 'columns' and 'keytypes'. ACYRTHOSIPHON_PISUM Descriptions of available values for 'columns' and 'keytypes' for inparanpoid packages. AnnDbObj-objects AnnDbObj objects AnnDbPkg-checker Check the SQL data contained in an SQLite-based annotation package AnnotationDb AnnotationDb objects and their progeny, methods etc. Bimap Bimap objects and the Bimap interface Bimap-direction Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys Bimap-envirAPI Environment-like API for Bimap objects Bimap-keys Methods for manipulating the keys of a Bimap object Bimap-toTable Methods for manipulating a Bimap object in a data-frame style BimapFormatting Formatting a Bimap as a list or character vector GOFrame GOFrame and GOAllFrame objects GOID Descriptions of available values for 'columns' and 'keytypes' for GO.db. GOTerms-class Class "GOTerms" KEGGFrame KEGGFrame objects createSimpleBimap Creates a simple Bimap from a SQLite database in an situation that is external to AnnotationDbi inpIDMapper Convenience functions for mapping IDs through an appropriate set of annotation packages makeGOGraph A convenience function to generate graphs based on the GO.db package make_eg_to_go_map Create GO to Entrez Gene maps for chip-based packages orgPackageName Org package contained in annotation object print.probetable Print method for probetable objects toSQLStringSet Convert a vector to a quoted string for use as a SQL value list toggleProbes Methods for getting/setting the filters on a Bimap object unlist2 A replacement for unlist() that does not mangle the names