A Simple Aggregation Mechanism.
Biobase Package Overview
Utility classes for length one (scalar) objects
Retrieve Meta-data from eSets and ExpressionSets.
Add Menu Items to an Existing/New Menu of Window
Methods for Function annotatedDataFrameFrom in Package 'Biobase'
Checks if there are any missing values in an object or not
Retrieve assay data from eSets and ExpressionSets.
Evaluate an expression if its value is not already cached.
Create a new ExpressionSet instance by selecting a specific channel
Retrieve and set channel names from object
Class Containing Measured Variables and Their Meta-Data Description.
Class "AssayData"
Class to Contain and Describe High-Throughput Expression Level Assays.
Class for Storing Microarray Experiment Information
MIAxE objects
Class to Contain and Describe High-Throughput Expression Level Assays.
Class to contain data from multiple channel array technologies
Class to Contain Objects Describing High-Throughput SNP Assays.
Class "Versioned"
Class "VersionedBiobase"
Class "Versions"
Class "VersionsNull"
A Simple Class for Aggregators
Class to Make Older Versions Compatible
A Lockable List Structure with Constraints on Content
Class to Contain High-Throughput Assays and Experimental Metadata
Retrieve information about versioned classes
Function to retrieve contents of environments
List-Environment interactions
Copy Between Connections or Files with Configure-Like Name-Value Substitution
Create a Package Directory from a Template
Dataset: Names and Characteristics of Amino Acids
Sample expression matrix and phenotype data.frames.
Example data.frame representing reporter information
Dataset of class 'ExpressionSet'
Data set of class 'MultiSet'
Biobase Deprecated and Defunct
Retrieve and set overall experimental information eSet-like classes.
Retrieve dimensions of all elements in a list or environment
Dump Textual Description of a Package
An apply-like function for ExpressionSet and related structures.
Retrieve expression data from eSets.
Retrieve information on features recorded in eSet-derived classes.
Retrieve feature and sample names from eSets.
List Vignette Files for a Package
Internals
Use version information to test whether class is current
Determine Unique Elements
Determine whether object or class contains versioning information
Compute the longest common prefix or suffix of a string
Lengths of list elements
Make an R package from a data object
Nearest neighbor search.
Assign Values to a Names
Informational Messages
Retrieve and set eSet notes.
Open PDF Files in a Standard Viewer
Open a Vignette or Show Vignette Selection Menu
Report Version of a Package
Retrieve information on experimental phenotypes recorded in eSet and ExpressionSet-derived classes.
Protocol Metadata
Read and write 'AnnotatedDataFrame'
Read MIAME Information into an Instance of Class 'MIAME'
Read 'ExpressionSet'
A function to reverse the role of names and values in a list.
Calculates the median for each row in a matrix
A function to compute empirical row quantiles.
Create a new NChannelSet instance by selecting specific channels
Extract elements of a vector for concise rendering
Get and retrieve SNP call and call probability data.
Retrieve or set storage mode for eSets.
Break Character Strings to Fit Width
Extract the same element from the sublists of a list
A function to check internet connectivity to Bioconductor
Update an object to the class definition of a template
Update previously created eSet object to current eSet structure
A function to query the user for input
Conditionally append result to validity message