BiocGenerics-package    S4 generic functions for Bioconductor
Extremes                Maxima and minima
IQR                     The Interquartile Range
Ontology                Generic Ontology getter
S3-classes-as-S4-classes
                        S3 classes as S4 classes
annotation              Accessing annotation information
append                  Append elements to a vector-like object
as.data.frame           Coerce an object into a data frame
as.vector               Coerce an object into a vector
boxplot                 Box plots
cbind                   Combine objects by rows or columns
clusterApply            Apply operations using clusters
combine                 Combining or merging different Bioconductor
                        data structures
conditions              Accessors and generic functions used in the
                        context of count datasets
dbconn                  Accessing SQLite DB information
density                 Kernel density estimation
do.call                 Execute a function call
duplicated              Determine duplicate elements
eval                    Evaluate an (unevaluated) expression
evalq                   Evaluate an (unevaluated) expression
fileName                Accessing the file name of an object
funprog                 Common higher-order functions in functional
                        programming languages
get                     Return the value of a named object
grep                    Pattern Matching and Replacement
image                   Display a color image
is.unsorted             Test if a vector-like object is not sorted
lapply                  Apply a function over a list-like or
                        vector-like object
lengths                 Lengths of the list elements of a list-like
                        object
mad                     Median Absolute Deviation
mapply                  Apply a function to multiple list-like or
                        vector-like arguments
match                   Value matching
mean                    Arithmetic Mean
normalize               Normalize an object
nrow                    The number of rows/columns of an array-like
                        object
order                   Ordering permutation
organism_species        Organism and species accessors
paste                   Concatenate strings
plotMA                  MA-plot: plot differences versus averages for
                        high-throughput data
plotPCA                 PCA-plot: Principal Component Analysis plot
rank                    Ranks the values in a vector-like object
relist                  Re-listing an unlist()ed object
rep.int                 Replicate elements of a vector-like object
residuals               Extract model residuals
row+colnames            Row and column names
rowSums                 Form Row and Column Sums and Means
score                   Score accessor
sets                    Set operations
sort                    Sorting a vector-like object
start                   Start, end, width generic getters and setters
strand                  Accessing strand information
subset                  Subsetting vector-like, matrix-like and
                        data-frame-like objects
t                       Matrix Transponse
table                   Cross tabulation and table creation
tapply                  Apply a function over a ragged array
testPackage             Run RUnit package unit tests
unique                  Extract unique elements
unlist                  Flatten list-like objects
unsplit                 Unsplit a list-like object
updateObject            Update an object to its current class
                        definition
var                     Variance and Standard Deviation
weights                 Extract model weights
which                   Subscript generators
xtabs                   Cross tabulation