biocUpdatePackages {BiocInstaller} | R Documentation |
Update previously installed Bioconductor or CRAN packages and their
dependencies.
Description
Update previously installed Bioconductor and CRAN packages and their
dependencies. Use biocLite
to install new packages or to
update all out-of-date packages. Upgrading to a new Bioconductor
release requires additional steps; see
https://bioconductor.org/install.
Usage
biocUpdatePackages(pkgs, dependencies = NA, repos=biocinstallRepos(), ...)
Arguments
pkgs |
character() of package names to install or update.
|
dependencies |
character() describing out-of-date
dependencies that are also updated. Defaults to c("Depends",
"Imports", "LinkingTo") but can be a subset of c("Depends",
"Imports", "LinkingTo", "Suggests", "Enhances") .
|
repos |
character() of named repositories in which to look
for package updates, in the style of biocinstallRepos() .
|
... |
Additional arguments, passed to
update.packages . For example, ask=FALSE to
avoid prompts to update individual packages.
|
Value
‘NULL’, invisibly.
Author(s)
Martin Morgan mtmorgan@fhcrc.org
See Also
biocLite
Examples
## Not run:
biocUpdatePackages("GenomicRanges", ask=FALSE)
## End(Not run)
[Package
BiocInstaller version 1.28.0
Index]