Bioconductor facilities for parallel evaluation


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Documentation for package ‘BiocParallel’ version 1.12.0

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B C D I M P R S

BiocParallel-package Bioconductor facilities for parallel evaluation

-- B --

BatchJobsParam Enable parallelization on batch systems
BatchJobsParam-class Enable parallelization on batch systems
BiocParallel Bioconductor facilities for parallel evaluation
BiocParallelParam BiocParallelParam objects
BiocParallelParam-class BiocParallelParam objects
bpaggregate Apply a function on subsets of data frames
bpaggregate-method Apply a function on subsets of data frames
bpbackend BiocParallelParam objects
bpbackend-method Enable parallelization on batch systems
bpbackend-method BiocParallelParam objects
bpbackend-method Enable parallel evaluation using registered dopar backend
bpbackend-method Enable simple network of workstations (SNOW)-style parallel evaluation
bpbackend<- BiocParallelParam objects
bpbackend<-,BatchJobsParam Enable parallelization on batch systems
bpbackend<--method BiocParallelParam objects
bpbackend<--method Enable parallel evaluation using registered dopar backend
bpbackend<--method Enable simple network of workstations (SNOW)-style parallel evaluation
bpcatchErrors BiocParallelParam objects
bpcatchErrors-method BiocParallelParam objects
bpcatchErrors<- BiocParallelParam objects
bpcatchErrors<--method BiocParallelParam objects
bpisup BiocParallelParam objects
bpisup-method Enable parallelization on batch systems
bpisup-method BiocParallelParam objects
bpisup-method Enable parallel evaluation using registered dopar backend
bpisup-method Enable multi-core parallel evaluation
bpisup-method Enable serial evaluation
bpisup-method Enable simple network of workstations (SNOW)-style parallel evaluation
bpiterate Parallel iteration over an indeterminate number of data chunks
bpiterate-method Parallel iteration over an indeterminate number of data chunks
bpjobname BiocParallelParam objects
bpjobname-method BiocParallelParam objects
bpjobname<- BiocParallelParam objects
bpjobname<--method BiocParallelParam objects
bplapply Parallel lapply-like functionality
bplapply-method Parallel lapply-like functionality
bplasterror Resume computation with partial results
bplog BiocParallelParam objects
bplog-method BiocParallelParam objects
bplog-method Enable serial evaluation
bplog-method Enable simple network of workstations (SNOW)-style parallel evaluation
bplog<- BiocParallelParam objects
bplog<--method Enable serial evaluation
bplog<--method Enable simple network of workstations (SNOW)-style parallel evaluation
bplogdir Enable simple network of workstations (SNOW)-style parallel evaluation
bplogdir-method Enable serial evaluation
bplogdir-method Enable simple network of workstations (SNOW)-style parallel evaluation
bplogdir<- Enable simple network of workstations (SNOW)-style parallel evaluation
bplogdir<--method Enable serial evaluation
bplogdir<--method Enable simple network of workstations (SNOW)-style parallel evaluation
bploop Internal Functions for SNOW-style Parallel Evaluation
bploop.iterate Internal Functions for SNOW-style Parallel Evaluation
bploop.lapply Internal Functions for SNOW-style Parallel Evaluation
bploop.MPInode Internal Functions for SNOW-style Parallel Evaluation
bploop.SOCK0node Internal Functions for SNOW-style Parallel Evaluation
bploop.SOCKnode Internal Functions for SNOW-style Parallel Evaluation
bpmapply Parallel mapply-like functionality
bpmapply-method Parallel mapply-like functionality
bpnworkers BiocParallelParam objects
bpok Resume computation with partial results
bpparam Maintain a global registry of available back-end Params
bpprogressbar BiocParallelParam objects
bpprogressbar-method BiocParallelParam objects
bpprogressbar<- BiocParallelParam objects
bpprogressbar<--method BiocParallelParam objects
bpresultdir Enable simple network of workstations (SNOW)-style parallel evaluation
bpresultdir-method Enable simple network of workstations (SNOW)-style parallel evaluation
bpresultdir<- Enable simple network of workstations (SNOW)-style parallel evaluation
bpresultdir<--method Enable simple network of workstations (SNOW)-style parallel evaluation
bpresume Resume computation with partial results
bpRNGseed Enable simple network of workstations (SNOW)-style parallel evaluation
bpRNGseed-method Enable simple network of workstations (SNOW)-style parallel evaluation
bpRNGseed<- Enable simple network of workstations (SNOW)-style parallel evaluation
bpRNGseed<--method Enable simple network of workstations (SNOW)-style parallel evaluation
bprunMPIslave Internal Functions for SNOW-style Parallel Evaluation
bpschedule Schedule back-end Params
bpschedule-method Enable parallelization on batch systems
bpschedule-method Enable multi-core parallel evaluation
bpschedule-method Schedule back-end Params
bpstart BiocParallelParam objects
bpstart-method Enable parallelization on batch systems
bpstart-method BiocParallelParam objects
bpstart-method Enable parallel evaluation using registered dopar backend
bpstart-method Enable simple network of workstations (SNOW)-style parallel evaluation
bpstop BiocParallelParam objects
bpstop-method Enable parallelization on batch systems
bpstop-method BiocParallelParam objects
bpstop-method Enable parallel evaluation using registered dopar backend
bpstop-method Enable simple network of workstations (SNOW)-style parallel evaluation
bpstopOnError BiocParallelParam objects
bpstopOnError-method BiocParallelParam objects
bpstopOnError<- BiocParallelParam objects
bpstopOnError<--method BiocParallelParam objects
bptasks BiocParallelParam objects
bptasks-method BiocParallelParam objects
bptasks<- BiocParallelParam objects
bptasks<--method BiocParallelParam objects
bpthreshold BiocParallelParam objects
bpthreshold-method BiocParallelParam objects
bpthreshold-method Enable simple network of workstations (SNOW)-style parallel evaluation
bpthreshold<- BiocParallelParam objects
bpthreshold<--method Enable serial evaluation
bpthreshold<--method Enable simple network of workstations (SNOW)-style parallel evaluation
bptimeout BiocParallelParam objects
bptimeout-method BiocParallelParam objects
bptimeout<- BiocParallelParam objects
bptimeout<--method BiocParallelParam objects
bptry Try expression evaluation, recovering from bperror signals
bpvalidate Tools for developing functions for parallel execution in distributed memory
bpvec Parallel, vectorized evaluation
bpvec-method Parallel, vectorized evaluation
bpvectorize Transform vectorized functions into parallelized, vectorized function
bpvectorize-method Transform vectorized functions into parallelized, vectorized function
bpworkers BiocParallelParam objects
bpworkers-method Enable parallelization on batch systems
bpworkers-method BiocParallelParam objects
bpworkers-method Enable parallel evaluation using registered dopar backend
bpworkers-method Enable serial evaluation
bpworkers-method Enable simple network of workstations (SNOW)-style parallel evaluation
bpworkers<- BiocParallelParam objects
bpworkers<--method Enable multi-core parallel evaluation
bpworkers<--method Enable simple network of workstations (SNOW)-style parallel evaluation

-- C --

coerce-method Enable parallel evaluation using registered dopar backend
coerce-method Enable simple network of workstations (SNOW)-style parallel evaluation

-- D --

DoparParam Enable parallel evaluation using registered dopar backend
DoparParam-class Enable parallel evaluation using registered dopar backend

-- I --

ipcid Inter-process locks and counters
ipclock Inter-process locks and counters
ipclocked Inter-process locks and counters
ipcremove Inter-process locks and counters
ipcreset Inter-process locks and counters
ipctrylock Inter-process locks and counters
ipcunlock Inter-process locks and counters
ipcvalue Inter-process locks and counters
ipcyield Inter-process locks and counters

-- M --

MulticoreParam Enable multi-core parallel evaluation
MulticoreParam-class Enable multi-core parallel evaluation
multicoreWorkers Enable multi-core parallel evaluation

-- P --

print.remote_error BiocParallelParam objects

-- R --

register Maintain a global registry of available back-end Params
registered Maintain a global registry of available back-end Params

-- S --

SerialParam Enable serial evaluation
SerialParam-class Enable serial evaluation
show-method Enable parallelization on batch systems
show-method BiocParallelParam objects
show-method Enable parallel evaluation using registered dopar backend
show-method Enable multi-core parallel evaluation
show-method Enable simple network of workstations (SNOW)-style parallel evaluation
SnowParam Enable simple network of workstations (SNOW)-style parallel evaluation
SnowParam-class Enable simple network of workstations (SNOW)-style parallel evaluation
snowWorkers Enable simple network of workstations (SNOW)-style parallel evaluation