Constraints             Enforcing constraints thru Constraint objects
DelegatingGenomicRanges-class
                        DelegatingGenomicRanges objects
GNCList-class           GNCList objects
GPos-class              Memory-efficient representation of genomic
                        positions
GRanges-class           GRanges objects
GRangesList-class       GRangesList objects
GenomicRanges-comparison
                        Comparing and ordering genomic ranges
GenomicRangesList-class
                        GenomicRangesList objects
absoluteRanges          Transform genomic ranges into "absolute" ranges
coverage-methods        Coverage of a GRanges or GRangesList object
findOverlaps-methods    Finding overlapping genomic ranges
genomic-range-squeezers
                        Squeeze the genomic ranges out of a range-based
                        object
genomicvars             Manipulating genomic variables
inter-range-methods     Inter range transformations of a GRanges or
                        GRangesList object
intra-range-methods     Intra range transformations of a GRanges or
                        GRangesList object
makeGRangesFromDataFrame
                        Make a GRanges object from a data.frame or
                        DataFrame
makeGRangesListFromDataFrame
                        Make a GRangesList object from a data.frame or
                        DataFrame
nearest-methods         Finding the nearest genomic range neighbor
phicoef                 Calculate the "phi coefficient" between two
                        binary variables
setops-methods          Set operations on genomic ranges
strand-utils            Strand utilities
tile-methods            Generate windows for a GenomicRanges
tileGenome              Put (virtual) tiles on a given genome