AtomicList Lists of Atomic Vectors in Natural and Rle Form AtomicList-utils Common operations on AtomicList objects CompressedHitsList-class CompressedHitsList objects CompressedList-class CompressedList objects DataFrame-utils Common operations on DataFrame objects DataFrameList-class List of DataFrames Grouping-class Grouping objects Hits-examples Examples of basic manipulation of Hits objects IPos-class Memory-efficient representation of integer positions IRanges-class IRanges and NormalIRanges objects IRanges-constructor The IRanges constructor and supporting functions IRanges-utils IRanges utility functions IRangesList-class List of IRanges and NormalIRanges MaskCollection-class MaskCollection objects NCList-class Nested Containment List objects RangedData-class Data on ranges RangedSelection-class Selection of ranges and columns Ranges-class Ranges objects Ranges-comparison Comparing and ordering ranges RangesList-class List of Ranges RleViews-class The RleViews class RleViewsList-class List of RleViews Views-class Views objects ViewsList-class List of Views coverage-methods Coverage of a set of ranges extractList Group elements of a vector-like object into a list-like object findOverlaps-methods Finding overlapping ranges inter-range-methods Inter range transformations of a Ranges, Views, RangesList, or MaskCollection object intra-range-methods Intra range transformations of a Ranges, Views, RangesList, or MaskCollection object multisplit Split elements belonging to multiple groups nearest-methods Finding the nearest range neighbor range-squeezers Squeeze the ranges out of a range-based object ranges,Rle-method Rle objects (old man page) read.Mask Read a mask from a file reverse reverse setops-methods Set operations on Ranges and RangesList objects slice-methods Slice a vector-like or list-like object stack,List-method List objects (old man page) unsplit,List-method 2 methods that should be documented somewhere else view-summarization-methods Summarize views on a vector-like object with numeric values window<-,Vector-method Vector objects (old man page)