Binary alignment (BAM), FASTA, variant call (BCF), and tabix
file import
Martin Morgan, Herv\'e Pag\`es, Valerie Obenchain, Nathaniel
    Hayden
This package provides an interface to the 'samtools',
    'bcftools', and 'tabix' utilities (see 'LICENCE') for manipulating
    SAM (Sequence Alignment / Map), FASTA, binary variant call (BCF)
    and compressed indexed tab-delimited (tabix) files.
methods, GenomeInfoDb (>= 1.1.3), GenomicRanges (>= 1.21.6),
Biostrings (>= 2.37.1)
utils, BiocGenerics (>= 0.1.3), S4Vectors (>= 0.13.8), IRanges
(>= 2.3.7), XVector (>= 0.15.1), zlibbioc, bitops, BiocParallel
GenomicAlignments, ShortRead (>= 1.19.10), GenomicFeatures,
TxDb.Dmelanogaster.UCSC.dm3.ensGene, KEGG.db,
TxDb.Hsapiens.UCSC.hg18.knownGene, RNAseqData.HNRNPC.bam.chr14,
BSgenome.Hsapiens.UCSC.hg19, pasillaBamSubset, RUnit, BiocStyle
DataImport, Sequencing, Coverage, Alignment, QualityControl