Package: SummarizedExperiment Title: SummarizedExperiment container Description: The SummarizedExperiment container contains one or more assays, each represented by a matrix-like object of numeric or other mode. The rows typically represent genomic ranges of interest and the columns represent samples. Version: 1.8.1 Encoding: UTF-8 Author: Martin Morgan, Valerie Obenchain, Jim Hester, Hervé Pagès Maintainer: Bioconductor Package Maintainer biocViews: Genetics, Infrastructure, Sequencing, Annotation, Coverage, GenomeAnnotation Depends: R (>= 3.2), methods, GenomicRanges (>= 1.29.14), Biobase, DelayedArray (>= 0.3.20) Imports: utils, stats, tools, Matrix, BiocGenerics (>= 0.15.3), S4Vectors (>= 0.13.13), IRanges (>= 2.11.17), GenomeInfoDb (>= 1.13.1) Suggests: annotate, AnnotationDbi, hgu95av2.db, GenomicFeatures, TxDb.Hsapiens.UCSC.hg19.knownGene, BiocStyle, knitr, rmarkdown, digest, jsonlite, rhdf5, HDF5Array (>= 1.5.8), airway, RUnit VignetteBuilder: knitr License: Artistic-2.0 Collate: Assays-class.R SummarizedExperiment-class.R RangedSummarizedExperiment-class.R intra-range-methods.R inter-range-methods.R coverage-methods.R findOverlaps-methods.R nearest-methods.R makeSummarizedExperimentFromExpressionSet.R makeSummarizedExperimentFromDataFrame.R readKallisto.R saveHDF5SummarizedExperiment.R zzz.R NeedsCompilation: no Packaged: 2017-12-19 01:04:03 UTC; biocbuild Built: R 3.5.0; ; 2018-08-29 13:48:32 UTC; unix