Assays-class            Assays objects
RangedSummarizedExperiment-class
                        RangedSummarizedExperiment objects
SummarizedExperiment-class
                        SummarizedExperiment objects
coverage-methods        Coverage of a RangedSummarizedExperiment object
findOverlaps-methods    Finding overlapping ranges in
                        RangedSummarizedExperiment objects
inter-range-methods     Inter range transformations of a
                        RangedSummarizedExperiment object
intra-range-methods     Intra range transformations of a
                        RangedSummarizedExperiment object
makeSummarizedExperimentFromDataFrame
                        Make a RangedSummarizedExperiment from a
                        data.frame or DataFrame
makeSummarizedExperimentFromExpressionSet
                        Make a RangedSummarizedExperiment object from
                        an ExpressionSet and vice-versa
nearest-methods         Finding the nearest range neighbor in
                        RangedSummarizedExperiment objects
readKallisto            Input kallisto or kallisto bootstrap results.
saveHDF5SummarizedExperiment
                        Save/load a HDF5-based SummarizedExperiment
                        object