filterGOByOntology {annotate} | R Documentation |
Given a character vector containing GO identifiers, return a logical vector indicating which GO IDs are in the specified ontology (BP, CC, or MF).
filterGOByOntology(goids, ontology = c("BP", "CC", "MF"))
goids |
a character vector of GO IDs |
ontology |
One of "BP", "CC", or "MF" |
A logical vector with length equal to goids
. A TRUE
indicates that the corresponding GO ID in goids
is a member
of the ontology specified by ontology
.
Seth Falcon
haveGO <- suppressWarnings(require("GO.db")) if (haveGO) { ids <- c("GO:0001838", "GO:0001839") stopifnot(all(filterGOByOntology(ids, "BP"))) stopifnot(!any(filterGOByOntology(ids, "MF"))) } else cat("Sorry, this example requires the GO package\n")