Anova |
A filter function for Analysis of Variance |
area |
Class "rowROC" |
area-method |
Class "rowROC" |
AUC |
Class "rowROC" |
AUC-method |
Class "rowROC" |
colFtests |
t-tests and F-tests for rows or columns of a matrix |
colFtests-method |
t-tests and F-tests for rows or columns of a matrix |
colttests |
t-tests and F-tests for rows or columns of a matrix |
colttests-method |
t-tests and F-tests for rows or columns of a matrix |
coxfilter |
A filter function for univariate Cox regression. |
cv |
A filter function for the coefficient of variation. |
dist2 |
Calculate an n-by-n matrix by applying a function to all pairs of columns of an m-by-n matrix. |
eSetFilter |
A function to filter an eSet object |
fastT |
t-tests and F-tests for rows or columns of a matrix |
featureFilter |
Filtering of Features in an ExpressionSet |
filtered_p |
Compute and adjust p-values, with filtering |
filtered_R |
Compute and adjust p-values, with filtering |
filterfun |
Creates a first FALSE exiting function from the list of filter functions it is given. |
filter_volcano |
Volcano plot for overall variance filtering |
findLargest |
Find the Entrez Gene ID corresponding to the largest statistic |
gapFilter |
A filter to select genes based on there being a gap. |
genefilter |
A function to filter genes. |
genefinder |
Finds genes that have similar patterns of expression. |
genefinder-method |
Finds genes that have similar patterns of expression. |
genescale |
Scales a matrix or vector. |
getFilterNames |
A function to filter an eSet object |
getFuncDesc |
A function to filter an eSet object |
getRdAsText |
A function to filter an eSet object |
half.range.mode |
Mode estimation for continuous data |
isESet |
A function to filter an eSet object |
kappa_p |
Compute proportionality constant for fold change bound. |
kappa_t |
Compute proportionality constant for fold change bound. |
kOverA |
A filter function for k elements larger than A. |
maxA |
A filter function to filter according to the maximum. |
nsFilter |
Filtering of Features in an ExpressionSet |
nsFilter-method |
Filtering of Features in an ExpressionSet |
parseArgs |
A function to filter an eSet object |
parseDesc |
A function to filter an eSet object |
pAUC |
Class "rowROC" |
pAUC-method |
Class "rowROC" |
plot-method |
Class "rowROC" |
pOverA |
A filter function to filter according to the proportion of elements larger than A. |
rejection_plot |
Plot rejections vs. p-value cutoff |
rowFtests |
t-tests and F-tests for rows or columns of a matrix |
rowFtests-method |
t-tests and F-tests for rows or columns of a matrix |
rowpAUCs |
Rowwise ROC and pAUC computation |
rowpAUCs-method |
Rowwise ROC and pAUC computation |
rowpAUCs-methods |
Rowwise ROC and pAUC computation |
rowROC |
Class "rowROC" |
rowROC-class |
Class "rowROC" |
rowSds |
Row variance and standard deviation of a numeric array |
rowttests |
t-tests and F-tests for rows or columns of a matrix |
rowttests-method |
t-tests and F-tests for rows or columns of a matrix |
rowVars |
Row variance and standard deviation of a numeric array |
sens |
Class "rowROC" |
sens-method |
Class "rowROC" |
setESetArgs |
A function to filter an eSet object |
shorth |
A location estimator based on the shorth |
show-method |
Class "rowROC" |
showESet |
A function to filter an eSet object |
spec |
Class "rowROC" |
spec-method |
Class "rowROC" |
tdata |
A small test dataset of Affymetrix Expression data. |
ttest |
A filter function for a t.test |
varFilter |
Filtering of Features in an ExpressionSet |
[-method |
Class "rowROC" |