Data analysis, linear models and differential expression for microarray data.
Gordon Smyth [cre,aut], Yifang Hu [ctb], Matthew Ritchie [ctb], Jeremy Silver [ctb], James Wettenhall [ctb], Davis McCarthy [ctb], Di Wu [ctb], Wei Shi [ctb], Belinda Phipson [ctb], Aaron Lun [ctb], Natalie Thorne [ctb], Alicia Oshlack [ctb], Carolyn de Graaf [ctb], Yunshun Chen [ctb], Mette Langaas [ctb], Egil Ferkingstad [ctb], Marcus Davy [ctb], Francois Pepin [ctb], Dongseok Choi [ctb]
grDevices, graphics, stats, utils, methods
affy, AnnotationDbi, BiasedUrn, Biobase, ellipse, GO.db,
gplots, illuminaio, locfit, MASS, org.Hs.eg.db, splines,
statmod (>= 1.2.2), vsn
ExonArray, GeneExpression, Transcription,
AlternativeSplicing, DifferentialExpression,
DifferentialSplicing, GeneSetEnrichment, DataImport, Genetics,
Bayesian, Clustering, Regression, TimeCourse, Microarray,
microRNAArray, mRNAMicroarray, OneChannel,
ProprietaryPlatforms, TwoChannel, RNASeq, BatchEffect,
MultipleComparison, Normalization, Preprocessing,
QualityControl